Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2439
Parameters: 2 7 7 80 10 50 1000
Length:  27334

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
473--546
37
2.0
36
84
7
96
55
2
1
40
1.22
468--563
39
2.5
36
81
10
102
54
4
1
40
1.27
1235--1297
23
2.6
24
82
9
67
41
7
1
49
1.42
2512--2560
21
2.3
21
82
6
55
42
0
2
55
1.11
3783--3831
2
25.0
2
83
4
64
48
4
2
44
1.33
4711--4748
20
1.9
20
84
10
51
42
5
0
52
1.24
4849--4881
2
16.5
2
93
0
57
48
3
0
48
1.17
5589--5648
31
1.9
31
100
0
120
31
6
20
41
1.78
6999--7032
10
3.5
10
88
8
52
76
0
0
23
0.79
11905--11938
14
2.4
14
90
9
52
55
0
0
44
0.99
14116--14158
23
1.9
23
90
4
70
39
18
6
34
1.78
14152--14176
3
8.3
3
100
0
50
36
32
0
32
1.58
14764--14805
2
21.0
2
100
0
84
50
0
0
50
1.00
16938--16991
8
6.8
8
77
8
56
66
1
0
31
1.02
16928--16995
19
3.8
18
77
15
70
64
1
0
33
1.02
17317--17372
22
2.5
22
79
2
58
57
0
0
42
0.99
18593--18650
29
2.0
29
96
0
107
43
13
12
31
1.81
19321--19364
20
2.2
20
92
4
72
31
0
0
68
0.90
21039--21117
32
2.4
32
80
4
86
56
1
2
39
1.21
21052--21125
32
2.6
26
69
22
67
54
1
2
41
1.23
22081--22151
24
2.8
25
81
14
76
56
4
7
32
1.46
23784--23827
15
2.8
16
79
10
54
50
2
4
43
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24464--24504
2
20.5
2
100
0
82
51
0
0
48
1.00
24835--24884
25
2.0
26
92
4
84
58
6
14
22
1.58
26822--26861
12
3.4
12
89
3
55
37
0
0
62
0.95
27050--27084
18
1.9
18
88
11
54
20
0
0
80
0.72
27118--27151
18
1.9
17
88
5
50
11
2
5
79
1.02

Tables:   1

The End!