Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2440
Parameters: 2 7 7 80 10 50 1000
Length:  80513

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6261--6311
22
2.4
22
86
3
68
88
5
3
1
0.69
6264--6311
10
4.6
10
85
10
51
89
4
4
2
0.64
6263--6302
1
40.0
1
84
0
53
92
5
2
0
0.45
7503--8514
28
35.9
29
79
9
1017
29
30
16
24
1.96
8428--8513
31
2.8
32
80
11
92
26
27
20
24
1.99
9335--9409
20
3.8
19
78
7
87
41
12
13
33
1.81
9332--9409
40
2.0
39
89
2
120
41
12
12
33
1.82
9972--10998
29
35.9
29
84
4
1289
23
16
30
29
1.96
9972--10998
57
17.9
58
87
3
1289
23
16
30
29
1.96
12170--12223
22
2.7
20
79
20
60
1
7
7
83
0.88
26135--26209
20
3.8
20
76
3
71
42
12
12
33
1.79
26132--26209
40
2.0
39
87
2
111
42
12
11
33
1.79
27191--27305
42
2.7
39
78
15
113
35
11
13
39
1.81
31156--31197
2
21.0
2
100
0
84
50
0
0
50
1.00
31670--31709
11
3.7
12
78
21
52
37
0
7
55
1.29
31666--31740
22
3.5
22
78
12
75
42
1
4
52
1.28
31744--31826
12
7.5
11
70
15
55
49
4
2
43
1.37
32908--32932
10
2.5
10
100
0
50
72
0
28
0
0.86
34034--34388
120
3.0
114
74
19
290
42
2
1
53
1.23
34148--34236
45
2.0
46
82
4
110
41
1
1
56
1.14
34178--34206
14
2.0
15
93
6
51
31
0
0
68
0.89
34016--34387
118
3.2
116
79
10
358
43
2
1
52
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34016--34387
110
3.2
111
79
12
396
43
2
1
52
1.24
35119--35435
155
2.1
153
82
4
381
41
15
14
28
1.86
35512--35541
14
2.1
14
93
0
51
33
6
10
50
1.62
35620--35662
18
2.4
18
85
11
61
32
4
4
58
1.39
35739--35780
22
1.9
22
85
9
59
52
0
2
45
1.13
37811--37855
2
22.5
2
100
0
90
51
0
0
48
1.00
39094--39147
25
2.1
26
89
3
83
44
12
5
37
1.66
47117--47173
26
2.2
26
87
0
78
47
21
5
26
1.71
47347--47393
3
15.7
3
100
0
94
65
0
0
34
0.93
47526--47565
2
20.0
2
100
0
80
50
0
0
50
1.00
50144--50173
13
2.2
14
94
5
53
73
0
0
26
0.84
50147--50203
22
2.6
22
81
15
73
75
3
0
21
0.95
50147--50241
9
10.4
9
71
15
54
70
2
2
25
1.09
50161--50232
19
3.8
19
75
5
65
70
2
1
25
1.08
50244--50281
10
3.7
10
86
6
58
89
0
5
5
0.59
54106--54179
27
2.7
27
80
0
85
47
22
4
25
1.69
58675--58796
27
4.6
27
71
6
97
45
17
5
31
1.71
58652--58819
78
2.2
78
90
0
264
46
17
5
29
1.72
61714--61745
16
1.9
16
93
6
55
18
0
3
78
0.89
63889--63947
13
4.1
14
76
22
52
38
3
1
55
1.26
63898--63954
13
4.6
13
75
18
59
38
1
1
57
1.19
65251--65290
20
2.0
20
100
0
80
20
25
15
40
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68364--68399
16
2.1
18
90
10
58
61
0
0
38
0.96
68610--68676
20
3.5
19
72
12
57
59
0
2
37
1.13
70767--70798
2
16.0
2
93
0
55
53
0
0
46
1.00
71491--71539
19
2.5
19
81
12
55
30
0
2
67
1.02
71864--72067
103
2.0
102
88
6
306
47
5
4
42
1.49
73053--73077
10
2.5
10
100
0
50
68
0
0
32
0.90
73762--73804
22
2.0
22
85
0
59
53
2
4
39
1.34
74705--74756
16
3.1
16
78
10
59
48
0
3
48
1.20
74898--74955
12
4.8
12
77
12
64
34
0
0
65
0.93
75929--75959
3
10.3
3
100
0
62
0
32
0
67
0.91

Tables:   1

The End!