Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2443
Parameters: 2 7 7 80 10 50 1000
Length:  54163

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2047--2130
32
2.6
32
96
0
150
35
21
14
28
1.92
2594--2622
13
2.2
13
100
0
58
41
17
13
27
1.87
5177--5223
23
2.0
24
84
12
62
61
19
4
14
1.49
6513--6570
21
2.8
21
100
0
116
48
10
15
25
1.77
6619--6644
13
2.0
13
100
0
52
38
15
15
30
1.88
10711--10741
15
2.1
15
93
0
53
48
16
22
12
1.80
12822--12847
13
2.0
13
100
0
52
30
15
15
38
1.88
12968--13013
21
2.2
20
81
11
58
32
19
4
43
1.71
15401--15426
13
2.0
13
100
0
52
38
15
15
30
1.88
20607--20702
38
2.5
38
87
0
138
31
11
14
42
1.81
21556--21600
21
2.2
21
92
4
74
44
8
20
26
1.80
22274--22330
22
2.5
23
82
5
71
64
7
0
28
1.19
22864--22889
13
2.0
13
100
0
52
38
15
15
30
1.88
22846--22909
32
2.0
33
87
3
94
40
17
14
28
1.88
26955--26985
15
2.1
15
93
0
53
48
16
22
12
1.80
29054--29092
13
3.0
13
88
0
60
33
17
12
35
1.88
29215--29257
20
2.2
19
84
16
52
32
18
4
44
1.71
31636--31661
13
2.0
13
100
0
52
38
15
15
30
1.88
31618--31681
32
2.0
33
87
3
94
40
17
14
28
1.88
40493--40538
9
5.1
9
87
10
67
86
0
13
0
0.56
40493--40527
10
3.6
10
96
3
63
91
0
8
0
0.42
40497--40543
9
5.2
9
87
10
51
82
0
17
0
0.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42241--42436
97
2.0
97
90
0
311
29
28
11
31
1.91
42416--42453
18
2.1
18
100
0
76
28
26
5
39
1.78
47399--47471
22
3.4
22
71
7
78
31
20
6
41
1.79
48731--48759
15
1.9
15
100
0
58
34
24
34
6
1.82
53035--53072
13
2.9
13
92
0
67
36
13
15
34
1.87

Tables:   1

The End!