genome.fa.s2444.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2444
Parameters: 2 7 7 80 10 50 1000
Length:  67110

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
804--846	3	14.3	3	85	0	59	39	0	30	30	1.57
3858--3882	13	1.9	13	100	0	50	36	16	16	32	1.90
3945--3969	13	1.9	13	100	0	50	32	16	16	36	1.90
10894--10943	24	2.0	25	84	3	66	72	16	6	6	1.25
12039--12068	8	3.6	8	91	8	51	50	23	0	26	1.50
12157--12318	32	5.2	30	85	8	182	22	30	15	30	1.95
12165--12312	62	2.4	63	86	4	219	24	30	16	28	1.97
12293--12982	27	21.3	33	75	15	518	20	34	12	32	1.90
12258--12982	61	11.2	67	84	8	486	20	34	12	32	1.90
12672--12960	61	4.7	61	95	0	524	22	34	13	30	1.92
13003--13697	49	14.7	49	81	9	829	24	25	17	32	1.97
13003--13697	92	7.4	92	87	5	720	24	25	17	32	1.97
12998--13653	141	4.7	135	87	6	775	24	25	17	32	1.97
13607--13819	52	3.7	55	77	12	173	24	23	14	36	1.93
14646--14670	13	1.9	13	100	0	50	36	16	16	32	1.90
14712--14736	13	1.9	13	100	0	50	32	16	16	36	1.90
14745--14873	52	2.5	52	97	0	240	34	17	17	29	1.94
19831--19869	13	3.0	13	88	0	60	30	12	17	38	1.88
21706--21810	53	2.0	53	96	0	192	42	5	19	32	1.74
22450--22498	13	4.2	13	71	28	56	30	12	18	38	1.87
25719--25786	20	3.5	20	83	2	93	27	20	13	38	1.90
26952--27018	33	2.0	33	88	0	98	34	11	13	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26972--26996	13	1.9	13	100	0	50	36	16	16	32	1.90
27062--27086	13	1.9	13	100	0	50	32	16	16	36	1.90
27095--27215	52	2.3	52	97	0	224	34	18	18	28	1.94
35453--36487	61	16.0	61	72	18	582	20	34	13	31	1.91
35430--36523	34	33.7	32	75	15	696	20	34	13	32	1.91
35549--35638	27	3.1	27	79	16	99	20	32	14	33	1.92
35716--35805	27	3.1	27	75	20	90	22	35	15	26	1.94
35645--36003	98	3.7	98	87	8	486	20	34	13	30	1.92
36067--36120	27	2.0	27	92	0	90	22	40	14	22	1.90
35811--36193	95	4.1	95	81	11	364	20	35	13	31	1.91
36334--36523	70	2.7	70	89	4	285	18	32	12	36	1.88
36355--36573	105	2.1	102	83	8	264	21	34	13	30	1.92
36530--36622	33	2.9	32	92	6	152	27	36	20	15	1.92
36648--37371	49	14.8	49	86	2	1010	24	26	17	32	1.97
36644--37437	98	8.1	98	93	3	1294	24	26	17	32	1.96
37285--37433	52	2.8	54	80	3	176	26	22	16	34	1.95
37285--37679	171	2.3	171	94	1	682	24	24	14	36	1.93
38488--38554	33	2.0	33	88	0	98	34	11	13	40	1.81
38508--38532	13	1.9	13	100	0	50	36	16	16	32	1.90
38598--38622	13	1.9	13	100	0	50	32	16	16	36	1.90
38631--38751	52	2.3	52	97	0	224	34	18	18	28	1.94
42703--42754	8	5.9	8	77	18	50	7	11	1	78	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43211--43240	16	1.9	15	93	6	51	30	16	0	53	1.44
49009--49063	19	2.8	20	80	5	67	40	14	12	32	1.84
55367--55409	2	21.5	2	90	0	68	48	0	0	51	1.00
65067--65240	34	5.1	34	81	2	188	25	6	25	42	1.78
65065--65240	68	2.6	68	89	0	262	26	6	25	42	1.78

Tables:   1

The End!