genome.fa.s2445.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2445
Parameters: 2 7 7 80 10 50 1000
Length:  61034

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
574--1444	55	15.4	55	83	8	981	27	26	20	25	1.99
575--1444	116	7.7	110	82	7	1035	27	27	20	25	1.99
600--1445	171	5.0	171	93	3	1379	27	26	20	25	1.99
2014--2070	21	2.7	21	97	0	105	33	10	19	36	1.86
2126--2193	19	3.9	19	78	21	85	35	11	14	38	1.83
2147--2171	13	1.9	13	100	0	50	36	16	16	32	1.90
2128--2190	32	2.0	32	96	0	117	34	12	15	36	1.86
2233--2258	13	2.0	13	100	0	52	30	15	15	38	1.88
2213--2279	33	2.0	33	88	0	98	25	14	16	43	1.86
4661--4839	80	2.2	82	86	2	272	29	27	13	29	1.95
4800--4871	28	2.6	28	84	0	81	22	31	19	26	1.97
4905--4959	28	1.9	29	88	3	85	20	23	20	36	1.95
4825--5027	79	2.6	79	80	1	219	24	29	16	30	1.97
6000--6116	53	2.2	53	96	0	216	35	17	18	27	1.94
6160--6198	13	3.0	13	92	0	69	30	15	17	35	1.91
7847--7933	30	2.9	29	89	6	129	25	28	18	27	1.98
7936--8290	34	10.8	33	77	14	328	21	33	12	31	1.91
7909--8453	62	8.5	63	77	14	365	21	32	12	33	1.91
8204--8376	87	2.0	88	91	3	287	21	31	13	33	1.92
8299--8485	71	2.7	69	90	4	295	18	33	12	35	1.89
8061--8485	104	4.2	104	73	17	237	20	33	12	33	1.90
8299--8505	34	5.9	35	82	11	253	19	34	12	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8313--8538	104	2.2	101	80	10	260	21	34	12	30	1.91
8490--8556	33	2.0	34	97	2	127	26	35	17	19	1.94
8559--9071	49	10.7	49	84	8	641	24	26	18	30	1.98
8678--8744	21	3.1	21	62	26	50	25	29	17	26	1.98
8657--9027	43	8.1	43	81	11	409	24	26	18	30	1.98
8608--9080	92	5.0	92	91	4	714	24	26	18	30	1.98
8883--9119	49	4.6	53	83	6	224	24	25	16	32	1.96
11263--11349	30	2.9	29	88	6	120	26	28	17	27	1.97
11383--11595	34	7.0	27	72	19	138	22	35	14	28	1.92
11352--11595	62	4.0	62	90	3	334	22	35	13	28	1.93
11421--11533	34	3.5	34	75	14	139	22	32	13	31	1.92
11352--11595	123	2.0	122	85	4	330	22	35	13	28	1.93
11540--11611	34	2.1	34	97	0	135	22	38	12	26	1.89
11764--11830	33	2.0	33	88	0	98	34	13	11	40	1.81
11784--11808	13	1.9	13	100	0	50	36	16	16	32	1.90
11871--11895	13	1.9	13	100	0	50	32	16	16	36	1.90
11904--12023	52	2.3	52	95	0	213	35	19	17	28	1.94
17561--17590	3	10.0	3	92	0	51	33	36	0	30	1.58
19280--19304	13	1.9	13	100	0	50	32	16	16	36	1.90
26137--26192	19	2.8	19	83	5	67	41	10	17	30	1.84
39404--39503	19	5.9	19	72	25	98	36	12	14	38	1.83
39406--39500	32	3.0	32	95	0	172	35	12	14	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39425--39481	13	3.9	13	72	24	51	36	14	14	35	1.86
39523--39589	33	2.0	33	85	0	89	26	14	14	43	1.85
42047--42115	27	2.5	27	88	2	93	24	31	21	21	1.98
42102--42271	52	3.3	51	76	11	175	29	25	12	32	1.93
41935--42270	104	3.2	103	70	13	288	29	25	12	31	1.93
42255--42331	28	2.8	28	87	0	100	23	33	19	23	1.97
41933--42338	212	1.9	212	89	3	629	27	27	13	31	1.94
41993--42410	107	3.9	107	73	14	288	27	27	15	30	1.96
42285--42489	79	2.6	79	82	1	232	23	30	17	28	1.97
53449--53492	16	2.6	17	89	7	72	90	9	0	0	0.44
53448--53492	17	2.6	18	82	13	67	91	8	0	0	0.43
53449--53502	23	2.4	22	90	3	81	88	9	1	0	0.58
53450--53502	16	3.3	16	86	0	70	88	9	1	0	0.58
53448--53502	1	55.0	1	77	0	56	89	9	1	0	0.57
54516--54603	29	3.1	29	61	26	71	26	35	19	19	1.95
54486--55328	55	15.3	55	90	3	1256	28	30	20	20	1.97
55176--55256	26	2.9	29	70	17	80	27	32	18	22	1.97
55850--55917	19	3.9	19	78	21	85	35	11	14	38	1.83
55852--55914	32	2.0	32	96	0	117	34	12	15	36	1.86
55871--55895	13	1.9	13	100	0	50	36	16	16	32	1.90
55957--55982	13	2.0	13	100	0	52	30	15	15	38	1.88
55937--56003	33	2.0	33	88	0	98	25	14	16	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58342--58683	52	6.5	53	70	17	205	29	26	12	31	1.92
58459--58527	27	2.5	27	88	2	93	24	31	21	21	1.98
58405--58799	109	3.7	105	73	11	327	27	27	14	30	1.95
58347--58682	104	3.2	103	71	13	297	30	25	12	31	1.93
58345--58752	212	1.9	214	88	4	628	27	27	13	31	1.94
58697--58904	80	2.6	79	80	3	211	23	30	16	29	1.96

Tables:   1

The End!