genome.fa.s2447.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2447
Parameters: 2 7 7 80 10 50 1000
Length:  127182

Tables:   1   

This is table  1  of  1  ( 115 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9195--9238	18	2.4	18	80	0	52	59	4	6	29	1.44
9678--9722	2	22.5	2	100	0	90	48	0	0	51	1.00
10187--10271	34	2.5	34	98	0	161	18	22	20	38	1.93
10793--10896	32	3.4	32	65	22	87	55	5	0	38	1.24
10800--10924	59	2.1	59	95	1	223	55	6	0	38	1.26
10800--10940	59	2.4	59	89	4	178	56	6	0	36	1.25
11487--11521	16	2.1	17	94	5	63	5	5	0	88	0.63
11487--11534	22	2.2	22	85	7	62	8	4	2	85	0.80
11487--11529	16	2.7	15	82	10	50	9	4	0	86	0.71
12183--12233	18	2.8	18	79	8	68	66	5	5	21	1.35
12188--12233	17	2.6	17	82	3	65	69	6	4	19	1.28
12682--12725	23	1.9	23	85	0	61	75	6	0	18	1.02
16791--16844	16	3.2	17	80	17	60	72	9	12	5	1.27
18162--18753	27	21.7	27	92	1	932	23	33	13	28	1.93
18162--18753	164	3.6	163	92	1	952	23	33	13	28	1.93
18138--18753	191	3.2	190	92	2	1000	23	33	13	28	1.93
21447--21521	33	2.3	33	97	0	141	40	24	9	26	1.85
28820--28878	31	1.9	31	85	0	82	54	0	11	33	1.37
30132--30369	66	3.6	66	92	1	379	47	8	4	39	1.54
30392--30422	16	1.9	16	93	0	53	58	6	0	35	1.24
30692--30725	17	1.9	17	88	5	50	67	5	0	26	1.13
33896--34024	52	2.5	52	94	0	222	29	16	17	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33896--34044	52	2.9	51	88	4	210	30	16	18	34	1.92
34033--34057	13	1.9	13	100	0	50	36	16	16	32	1.90
34120--34144	13	1.9	13	100	0	50	32	16	16	36	1.90
34098--34164	33	2.0	33	85	0	89	40	16	11	31	1.85
36513--36545	16	1.9	18	88	11	52	15	6	0	78	0.93
38322--38384	3	21.0	3	90	0	99	61	0	3	34	1.12
40516--40573	30	2.0	29	82	3	71	29	15	3	51	1.60
41177--41251	13	5.5	13	73	19	55	56	0	0	44	0.99
41177--41237	27	2.2	29	82	5	81	55	0	0	44	0.99
42311--42368	11	5.7	10	78	10	64	1	15	0	82	0.74
42314--42368	19	2.6	22	86	13	73	1	16	0	81	0.77
42311--42366	15	3.5	16	79	11	62	1	16	0	82	0.76
42338--42374	19	1.9	19	88	0	56	2	16	2	78	0.98
42553--42604	24	2.2	24	86	3	70	61	1	5	30	1.30
42730--42790	23	2.7	23	85	12	81	63	0	0	36	0.94
42707--42772	18	3.6	16	73	25	51	63	1	0	34	1.04
42728--42794	24	2.8	25	80	17	79	64	0	0	35	0.94
43463--43489	13	2.1	13	100	0	54	77	0	0	22	0.76
43686--43764	27	2.9	27	75	7	72	50	0	2	46	1.14
44304--44358	28	2.0	28	85	7	76	45	3	1	49	1.30
46057--46093	16	2.3	17	86	9	51	70	0	0	29	0.88
49735--49764	13	2.2	14	94	5	53	30	23	6	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53718--53746	2	14.5	2	100	0	58	48	0	0	51	1.00
58362--58440	24	3.5	22	67	16	54	49	0	0	50	1.00
60205--60378	10	17.6	10	66	21	57	38	1	0	59	1.07
60205--60378	27	6.6	25	70	13	93	38	1	0	59	1.07
60223--60258	18	1.9	19	88	5	56	41	0	0	58	0.98
60251--60308	17	3.5	17	72	25	52	48	0	0	51	1.00
60262--60331	33	2.1	32	84	5	86	42	2	0	54	1.15
60332--60377	17	2.8	17	75	15	51	32	0	0	67	0.91
60270--60370	8	11.8	8	69	17	60	38	1	0	59	1.09
61777--61840	20	3.2	20	74	21	64	50	0	0	50	1.00
61831--61910	10	7.8	10	72	10	54	38	1	0	60	1.05
61777--61887	40	2.8	40	84	10	122	48	0	0	51	1.00
61776--61856	20	3.8	21	72	21	62	48	0	0	51	1.00
61777--61887	41	2.7	40	78	12	120	48	0	0	51	1.00
62290--62335	2	23.5	2	91	4	76	52	0	0	47	1.00
63332--63371	19	2.1	19	86	9	55	50	0	0	50	1.00
67139--67194	26	2.2	26	96	0	103	16	32	8	42	1.79
71378--71417	3	13.3	3	100	0	80	32	0	0	67	0.91
71815--71839	13	1.9	13	100	0	50	68	0	0	32	0.90
72384--72433	23	2.3	21	86	6	64	64	0	0	36	0.94
72396--72441	23	2.0	22	91	4	74	67	0	0	32	0.91
72569--72608	8	5.0	8	100	0	80	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77358--77404	13	3.4	13	83	16	67	38	0	0	61	0.96
77350--77414	29	2.3	29	86	5	98	50	0	0	49	1.00
77607--77661	8	6.9	8	78	14	51	38	0	1	60	1.08
78734--78762	2	14.5	2	100	0	58	51	48	0	0	1.00
79564--79624	12	5.0	12	71	11	52	39	0	1	59	1.08
79749--79773	12	2.1	12	100	0	50	48	16	8	28	1.74
80053--80089	19	2.0	18	89	5	56	35	10	2	51	1.51
86365--86406	13	3.2	13	83	6	57	23	0	4	71	1.05
88651--88685	18	1.9	18	100	0	70	17	40	14	28	1.88
89275--89336	30	2.0	31	84	3	81	48	9	14	27	1.75
89399--89431	15	2.1	16	88	5	50	54	6	6	33	1.50
91093--91153	31	2.0	31	93	0	104	24	21	14	39	1.91
94521--94546	2	13.0	2	100	0	52	50	0	0	50	1.00
95102--95143	22	1.9	22	85	0	57	26	4	2	66	1.23
95980--96019	16	2.4	17	83	4	55	32	0	7	60	1.25
96091--96149	15	4.0	15	77	16	52	66	0	0	33	0.92
96088--96148	23	2.7	22	82	17	72	63	0	0	36	0.94
96444--96478	17	2.1	16	89	5	52	62	0	8	28	1.24
96450--96499	17	2.9	18	82	14	52	60	6	6	28	1.44
100580--100635	18	3.0	18	76	16	60	53	0	0	46	1.00
100833--100905	22	3.4	21	75	5	74	41	1	0	57	1.07
100826--100907	22	3.7	22	73	4	69	41	1	0	57	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100829--100948	55	2.2	55	85	8	156	41	0	1	55	1.15
100966--101016	27	1.9	27	84	11	70	56	0	0	43	0.99
101258--101291	3	11.3	3	100	0	68	0	35	32	32	1.58
107382--107438	27	2.1	27	96	0	105	22	12	28	36	1.90
107599--107716	35	3.5	33	75	13	105	55	1	2	40	1.24
107697--107773	41	1.9	40	84	7	102	61	0	0	38	0.96
107712--107763	17	3.1	17	76	18	56	65	0	0	34	0.93
108050--108143	19	5.1	19	67	21	56	41	3	1	54	1.23
108056--108160	55	1.9	55	80	7	124	41	3	1	52	1.30
108325--108515	34	5.7	33	81	4	220	27	8	23	40	1.83
108325--108508	102	1.8	101	88	3	280	27	8	23	40	1.84
108828--108870	19	2.3	19	88	8	61	30	18	16	34	1.93
112935--113119	34	5.5	34	87	0	255	25	7	26	40	1.81
112935--113118	102	1.8	101	92	1	314	26	7	26	40	1.81
114617--114681	24	2.6	24	76	9	60	47	23	4	24	1.70
114640--114709	28	2.6	26	78	12	79	48	22	4	24	1.68
114655--114716	28	2.2	28	88	5	90	53	20	6	19	1.67
114663--114717	28	2.0	28	96	0	101	49	21	9	20	1.76
119167--119206	21	1.9	21	89	0	62	42	25	5	27	1.75
120070--120132	11	6.0	11	80	9	78	65	0	3	31	1.09
120080--120132	20	2.6	20	96	3	97	66	0	3	30	1.10
120070--120134	31	2.1	30	85	2	85	66	0	3	30	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121378--121489	58	1.9	58	94	0	197	53	8	6	32	1.55
122394--122468	20	3.8	20	76	0	78	36	13	10	40	1.79
122394--122471	40	2.0	39	84	2	102	35	12	11	39	1.80
123379--123433	21	2.5	23	88	11	96	18	10	9	61	1.54
123387--123440	21	2.6	21	91	2	65	20	9	9	61	1.54

Tables:   1

The End!