Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold2450

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10260
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33


Found at i:8034 original size:18 final size:17

Alignment explanation


    Indices: 8011--8044  Score: 50
    Period size: 17  Copynumber: 1.9  Consensus size: 17

       8001 AAATATATTT

                              
       8011 AAAAATTAAATTAAAATA
          1 AAAAATT-AATTAAAATA

                   *        
       8029 AAAAATTTATTAAAAT
          1 AAAAATTAATTAAAAT

       8045 TATAATATAA


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  17    8  0.53
  18    7  0.47

ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32


Consensus pattern (17 bp):   
AAAAATTAATTAAAATA

Found at i:9855 original size:2 final size:2

Alignment explanation


    Indices: 9848--9886  Score: 78
    Period size: 2  Copynumber: 19.5  Consensus size: 2

       9838 AGGGAATGAA

                                                                      
       9848 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       9887 GCGATGCAAA


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   37  1.00

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT

Done.