genome.fa.s2451.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2451
Parameters: 2 7 7 80 10 50 1000
Length:  93489

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
837--967	50	2.6	50	86	2	183	41	15	15	27	1.87
5605--5642	20	1.9	20	100	0	76	36	10	15	36	1.82
9906--10081	67	2.6	67	80	1	210	44	12	19	23	1.85
12288--12340	26	2.0	26	89	7	81	30	28	9	32	1.88
12246--12655	80	5.1	80	78	3	351	27	27	11	33	1.91
15837--15864	13	2.2	13	100	0	56	39	14	14	32	1.86
15814--15882	33	2.1	33	88	0	102	34	20	11	33	1.89
15911--15957	20	2.4	20	89	3	78	34	14	19	31	1.92
23141--23175	3	11.7	3	87	0	52	28	31	0	40	1.57
23139--23177	9	4.3	9	81	12	53	25	30	0	43	1.55
26962--27004	18	2.4	18	84	0	59	32	18	13	34	1.90
32890--32927	13	2.9	13	88	0	58	39	18	7	34	1.80
35357--35383	13	2.1	13	100	0	54	29	14	14	40	1.86
35338--35402	33	2.0	32	88	8	96	26	16	15	41	1.88
35368--35442	19	3.9	19	91	1	105	29	16	14	40	1.88
36242--36267	13	2.0	13	100	0	52	30	15	15	38	1.88
36327--36399	20	3.6	20	81	3	101	31	17	13	36	1.89
36306--36382	21	3.7	21	77	6	86	28	16	11	42	1.84
36306--36399	41	2.3	41	94	3	163	29	18	12	39	1.88
38840--38878	13	3.0	13	96	0	69	35	15	17	30	1.91
40957--40987	15	2.1	15	93	0	53	12	22	16	48	1.80
45050--45075	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45135--45207	20	3.6	20	81	3	101	31	17	13	36	1.89
45114--45190	21	3.7	21	77	6	86	28	16	11	42	1.84
45114--45207	41	2.3	41	94	3	163	29	18	12	39	1.88
45498--45579	33	2.5	32	86	9	112	39	12	15	32	1.85
45529--45559	13	2.4	13	94	0	53	35	16	12	35	1.87
49431--49550	20	5.7	20	73	11	87	32	10	12	44	1.77
51703--51929	97	2.3	96	88	4	330	29	28	11	30	1.92
53180--53575	197	2.0	197	94	1	686	29	10	20	39	1.86
57972--58117	20	6.8	20	75	16	139	42	11	15	30	1.83
57921--58117	91	2.2	92	88	2	290	41	12	16	29	1.84
58883--59957	28	37.0	28	83	6	1015	22	18	28	29	1.97
59962--60391	27	15.7	27	84	5	490	28	13	32	25	1.93
59962--60392	82	5.3	82	86	3	539	28	13	32	25	1.93
59962--60392	55	7.9	54	83	4	503	28	13	32	25	1.93
60938--61051	49	2.3	50	90	1	176	28	17	13	40	1.87
63430--63547	51	2.3	51	85	0	173	30	22	11	34	1.90
63370--63620	130	1.9	130	84	4	337	29	20	11	37	1.89
63501--63863	79	4.6	79	81	6	414	28	25	13	33	1.93
64453--64496	20	2.1	21	91	4	72	40	13	6	38	1.71
64457--64520	33	1.9	33	87	6	94	35	15	7	40	1.76
83729--83799	22	3.2	22	71	16	67	8	12	8	70	1.34
88599--88668	20	3.5	20	73	11	54	35	12	11	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90869--91117	97	2.6	98	87	7	382	24	30	14	29	1.95

Tables:   1

The End!