genome.fa.s2453.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2453
Parameters: 2 7 7 80 10 50 1000
Length:  44981

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
932--957	13	2.0	13	100	0	52	38	15	15	30	1.88
2694--2737	8	5.2	8	86	8	52	52	11	0	36	1.38
7979--8010	15	2.1	15	100	0	64	37	0	0	62	0.95
8012--8084	36	2.0	38	82	15	91	58	0	2	38	1.12
9478--9530	20	2.6	21	85	8	74	28	13	16	41	1.86
9478--9536	20	3.0	19	85	7	73	27	11	18	42	1.85
11613--11653	20	2.0	20	85	4	55	9	31	41	17	1.82
12096--12120	13	1.9	13	100	0	50	32	16	20	32	1.94
12638--12662	13	1.9	13	100	0	50	36	16	16	32	1.90
12726--12750	13	1.9	13	100	0	50	32	16	16	36	1.90
16284--16336	20	2.6	21	85	8	74	28	13	16	41	1.86
16284--16342	20	3.0	19	85	7	73	25	11	20	42	1.86
17558--17629	28	2.6	28	86	0	90	25	19	33	22	1.97
17618--17899	52	5.4	52	77	9	279	32	10	25	31	1.90
17622--17904	105	2.7	104	79	8	281	33	10	25	30	1.90
20261--20286	13	2.0	13	100	0	52	38	15	15	30	1.88
20240--20306	33	2.0	33	88	0	98	43	16	14	25	1.86
20417--20494	21	3.7	21	98	0	147	37	20	10	32	1.86
21194--22527	59	23.0	59	89	4	1687	25	20	27	25	1.99
21146--22471	407	3.3	404	87	6	1896	25	21	27	25	1.99
21194--22527	525	2.6	525	92	2	2178	25	20	27	25	1.99
22413--22498	27	3.1	27	62	15	68	23	18	30	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23542--23595	12	4.4	12	90	9	74	0	5	11	83	0.80
23532--23595	18	3.6	17	74	17	58	0	6	10	82	0.82
23517--23594	14	5.6	14	72	13	54	0	10	7	82	0.86
29955--29981	11	2.5	11	100	0	54	70	11	7	11	1.34
32399--32519	52	2.3	52	95	0	215	28	19	18	34	1.95
32399--32539	52	2.7	51	89	4	203	29	18	18	33	1.95
32528--32552	13	1.9	13	100	0	50	36	16	16	32	1.90
32616--32640	13	1.9	13	100	0	50	32	16	16	36	1.90
32594--32660	33	2.0	33	88	0	98	40	13	11	34	1.81
33603--33671	22	3.2	22	63	19	54	30	17	26	26	1.97
33537--34602	49	21.7	49	86	4	1470	30	17	27	24	1.97
33532--34602	295	3.6	295	94	1	1807	30	17	27	24	1.97
34606--34702	33	3.0	34	89	10	166	15	18	38	27	1.91
34606--34698	32	2.9	32	92	7	161	12	19	38	29	1.89
34688--35280	34	17.3	35	76	15	382	32	13	32	21	1.92
34765--35341	34	17.7	33	80	11	439	32	14	31	21	1.93
34767--35188	62	6.4	62	82	10	307	32	13	32	21	1.92
35035--35372	62	5.3	62	88	6	303	31	15	28	23	1.95
35177--35372	63	3.1	63	94	2	335	30	16	28	25	1.97
35195--35372	31	5.7	31	84	7	236	28	17	28	25	1.98
36329--36359	16	1.9	16	93	0	53	0	6	6	87	0.68
41125--41151	11	2.5	11	100	0	54	70	11	7	11	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43569--43689	52	2.3	52	95	0	215	28	19	18	34	1.95
43569--43709	52	2.7	51	89	4	203	29	18	18	33	1.95
43698--43722	13	1.9	13	100	0	50	36	16	16	32	1.90
43786--43810	13	1.9	13	100	0	50	32	16	16	36	1.90
43764--43830	33	2.0	33	88	0	98	40	13	11	34	1.81

Tables:   1

The End!