genome.fa.s2454.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2454
Parameters: 2 7 7 80 10 50 1000
Length:  50778

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38--78	21	2.0	20	85	4	55	41	4	29	24	1.75
466--625	84	1.9	84	83	7	209	54	3	16	25	1.57
1895--1924	13	2.3	13	94	0	51	43	13	13	30	1.82
4493--4519	13	2.1	13	100	0	54	40	14	14	29	1.86
7760--7832	20	3.6	20	79	3	92	36	13	17	31	1.89
7778--7853	21	3.7	21	76	3	91	43	11	15	28	1.83
7760--7853	41	2.3	41	96	0	170	40	12	17	29	1.86
7892--7917	13	2.0	13	100	0	52	38	15	15	30	1.88
11978--12008	15	2.1	15	93	0	53	48	16	22	12	1.80
14022--14100	20	3.7	21	75	15	72	26	13	15	44	1.84
14087--14125	13	3.0	13	96	0	69	30	17	15	35	1.91
16607--16679	20	3.6	20	81	3	101	35	13	19	31	1.91
16625--16700	21	3.7	21	80	3	100	42	11	17	28	1.84
16607--16700	41	2.3	41	98	0	179	39	12	18	29	1.88
16739--16764	13	2.0	13	100	0	52	38	15	15	30	1.88
18702--18739	20	1.9	20	100	0	76	31	13	10	44	1.77
18778--18816	20	1.9	21	94	5	71	20	17	20	41	1.91
19905--19933	9	3.2	9	100	0	58	31	20	34	13	1.92
21353--21377	13	1.9	13	100	0	50	36	16	16	32	1.90
21513--21547	15	2.3	15	95	0	61	62	28	0	8	1.24
27275--27335	19	3.1	19	76	15	70	39	16	9	34	1.82
28185--28302	49	2.4	48	84	1	155	32	19	23	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28234--28928	87	8.0	87	94	0	1192	27	19	26	26	1.99
28890--29672	87	9.0	87	96	0	1413	27	20	26	25	1.99
28183--29672	174	8.5	168	90	3	1069	27	19	26	25	1.99
28234--29538	261	5.0	261	86	7	1124	27	20	26	25	1.99
28494--29313	396	2.1	396	95	0	1487	27	20	26	25	1.99
29689--29758	30	2.4	29	88	4	97	17	17	30	35	1.92
29749--29871	35	3.6	34	86	6	151	40	11	28	19	1.86
29950--30056	28	3.8	28	84	9	144	16	16	31	34	1.92
29942--30071	58	2.3	57	86	2	197	23	16	30	30	1.96
31439--31505	8	7.9	8	78	8	62	0	4	13	82	0.82
31460--31506	22	2.1	22	84	7	60	0	6	10	82	0.82
45496--45558	19	3.6	19	72	24	75	34	17	12	34	1.88
45488--45558	32	2.2	32	97	0	133	35	18	12	33	1.89
49146--49170	13	1.9	13	100	0	50	40	16	12	32	1.84

Tables:   1

The End!