genome.fa.s2457.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2457
Parameters: 2 7 7 80 10 50 1000
Length:  59108

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5258--5377	52	2.3	52	95	0	213	35	19	17	28	1.94
9567--10009	79	5.6	78	77	6	374	36	12	22	27	1.91
9563--10009	158	2.8	158	81	4	472	36	12	22	27	1.91
15712--15850	67	2.0	69	95	2	255	37	13	15	33	1.87
16163--16265	48	2.2	46	81	8	118	22	19	21	36	1.95
20924--21272	154	2.2	156	78	5	350	42	14	15	27	1.86
21459--21492	18	2.0	18	88	11	54	35	0	0	64	0.94
22360--22411	27	1.9	26	81	14	61	57	9	1	30	1.42
24583--24651	27	2.5	27	86	6	86	21	21	31	24	1.98
27101--27167	33	2.0	33	85	0	89	41	16	16	25	1.88
27187--27254	19	3.9	18	76	23	83	38	14	11	35	1.83
27209--27233	13	1.9	13	100	0	50	32	16	16	36	1.90
27190--27252	32	2.0	32	96	0	117	36	15	12	34	1.86
27310--27366	21	2.7	21	91	0	96	36	17	10	35	1.84
28678--28768	7	12.7	7	73	17	53	76	0	23	0	0.78
28688--28765	16	4.5	17	76	12	61	74	0	25	0	0.82
28678--28768	31	3.0	30	81	12	96	76	0	23	0	0.78
28716--28768	17	3.1	17	78	7	63	79	0	20	0	0.74
28707--28768	14	4.5	14	80	8	65	77	0	22	0	0.77
31738--31842	18	5.8	18	81	6	131	41	12	10	35	1.77
31721--31848	37	3.6	36	83	11	165	44	12	10	32	1.76
31721--31848	36	3.6	36	83	8	163	44	12	10	32	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36681--36721	21	2.0	21	85	9	57	39	12	9	39	1.76
36908--36938	10	3.1	10	90	0	53	22	29	6	41	1.78
36926--36981	21	2.6	22	94	5	105	26	25	10	37	1.88
36948--37032	34	2.6	32	87	8	127	29	23	9	37	1.86
37044--37069	13	2.0	13	100	0	52	30	15	23	30	1.95
37548--37614	37	1.9	35	88	11	102	32	11	25	29	1.92
37952--38163	93	2.3	91	80	7	237	33	26	9	30	1.88
39433--39484	27	1.9	27	84	0	68	75	3	9	11	1.18
41138--41200	19	3.6	19	72	24	66	34	11	17	36	1.85
41157--41181	13	1.9	13	100	0	50	36	16	16	32	1.90
41138--41206	32	2.2	32	94	0	120	34	10	17	37	1.83
41252--41279	13	2.2	13	100	0	56	28	14	17	39	1.89
48255--48322	22	3.0	22	81	14	86	82	17	0	0	0.67
48271--48324	12	4.5	13	80	15	64	83	16	0	0	0.65
48257--48324	32	2.1	32	86	8	93	83	16	0	0	0.64
49510--49879	31	12.0	30	83	6	395	23	30	14	31	1.95
49510--49937	61	7.0	61	83	5	458	23	31	14	30	1.95
49513--49937	91	4.7	91	83	5	450	23	31	14	30	1.95
49513--49937	30	14.1	30	84	4	354	23	31	14	30	1.95
49943--50033	33	2.7	33	77	11	96	25	31	12	30	1.92
50009--50079	28	2.4	29	81	11	74	39	29	14	16	1.88
50093--51299	49	24.8	49	79	10	1145	24	25	17	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50093--51112	101	10.4	101	82	7	1221	24	25	17	32	1.97
50093--51111	290	3.5	290	89	3	1444	24	25	17	32	1.97
50583--50661	39	2.0	39	87	0	113	30	25	18	25	1.98
50622--51249	202	3.2	199	85	4	773	23	26	17	32	1.97
51074--51152	39	2.0	39	92	0	131	27	25	18	27	1.98
50144--51299	491	2.4	491	87	4	1553	24	25	17	32	1.97
52781--52806	13	2.0	13	100	0	52	30	15	15	38	1.88
52845--52920	21	3.7	21	80	3	100	28	17	11	42	1.84
52866--52938	20	3.6	20	79	3	92	31	17	13	36	1.89
52845--52938	41	2.3	41	96	0	170	29	17	12	40	1.86
55376--55414	13	3.0	13	96	0	69	35	15	17	30	1.91
55400--55478	20	3.7	20	78	18	79	46	15	13	24	1.82
57487--57517	15	2.1	15	93	0	53	12	22	16	48	1.80

Tables:   1

The End!