Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold246
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1425817
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.34
File 1 of 8
Found at i:3094 original size:2 final size:2
Alignment explanation
Indices: 3087--3118 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
3077 TATATGAGAA
3087 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
3119 ACTGTATGCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:4969 original size:23 final size:22
Alignment explanation
Indices: 4943--4991 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 22
4933 TAAAATTTTT
* *
4943 TTAATTTATTTATAGAATTAAAA
1 TTAATTAATTT-TAAAATTAAAA
4966 TTAAATTAATTTTAAAATTAAAA
1 TT-AATTAATTTTAAAATTAAAA
4989 TTA
1 TTA
4992 TTATAAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 1 0.04
23 14 0.61
24 8 0.35
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (22 bp):
TTAATTAATTTTAAAATTAAAA
Found at i:4998 original size:17 final size:18
Alignment explanation
Indices: 4961--5005 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
4951 TTTATAGAAT
*
4961 TAAAATT-AAATTAATTT
1 TAAAATTAAAATTAATTA
4978 TAAAATTAAAATT-ATTA
1 TAAAATTAAAATTAATTA
*
4995 TAAAAATAAAA
1 TAAAATTAAAA
5006 AATTTATATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 20 0.80
18 5 0.20
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
TAAAATTAAAATTAATTA
Found at i:5056 original size:3 final size:3
Alignment explanation
Indices: 5048--5088 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
5038 TAAATTTAAA
5048 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
5089 ATAATTTGAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:10102 original size:27 final size:26
Alignment explanation
Indices: 10064--10176 Score: 79
Period size: 27 Copynumber: 4.1 Consensus size: 26
10054 TGAAAAGTAA
*
10064 ATTTA-ATAATTTAAATATTTATATCAT
1 ATTTATAT-ATTT-AATATTTATATTAT
*
10091 ATTTATATATTTTATTATATTATAATTAT
1 ATTTATATA-TTTAATAT-TTAT-ATTAT
* * *
10120 ATTTAAAATATTTTATATTTATA-TAA
1 ATTT-ATATATTTAATATTTATATTAT
10146 ATTT-TAATATATTAATAATTTATATTAT
1 ATTTAT-ATAT-TTAAT-ATTTATATTAT
10174 ATT
1 ATT
10177 AATTTTAAAA
Statistics
Matches: 68, Mismatches: 9, Indels: 17
0.72 0.10 0.18
Matches are distributed among these distances:
25 4 0.06
26 10 0.15
27 18 0.26
28 18 0.26
29 14 0.21
30 4 0.06
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.57
Consensus pattern (26 bp):
ATTTATATATTTAATATTTATATTAT
Found at i:10163 original size:18 final size:17
Alignment explanation
Indices: 10066--10179 Score: 54
Period size: 18 Copynumber: 6.3 Consensus size: 17
10056 AAAAGTAAAT
*
10066 TTAATAATTTAAATAT-
1 TTAATAATTTTAATATA
* *
10082 TTATATCATATTTATATATT
1 TTA-ATAAT-TTTA-ATATA
* *
10102 TTATTATATTATAATTATA
1 TTAATA-ATTTTAA-TATA
*
10121 TTTAA-AATATTTTATAT-
1 -TTAATAAT-TTTAATATA
10138 TTATATAAATTTTAATATA
1 TTA-AT-AATTTTAATATA
*
10157 TTAATAATTTATATTATA
1 TTAATAATTT-TAATATA
10175 TTAAT
1 TTAAT
10180 TTTAAAATAT
Statistics
Matches: 74, Mismatches: 11, Indels: 24
0.68 0.10 0.22
Matches are distributed among these distances:
16 6 0.08
17 10 0.14
18 29 0.39
19 21 0.28
20 8 0.11
ACGTcount: A:0.43, C:0.01, G:0.00, T:0.56
Consensus pattern (17 bp):
TTAATAATTTTAATATA
Found at i:10181 original size:32 final size:33
Alignment explanation
Indices: 10126--10191 Score: 98
Period size: 32 Copynumber: 2.0 Consensus size: 33
10116 TTATATTTAA
* *
10126 AATATTTTATATTTATATAAATTTTAATATATT
1 AATAATTTATATTTATATAAATTTTAAAATATT
*
10159 AATAATTTATA-TTATATTAATTTTAAAATATT
1 AATAATTTATATTTATATAAATTTTAAAATATT
10191 A
1 A
10192 TCGATGCAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 20 0.67
33 10 0.33
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (33 bp):
AATAATTTATATTTATATAAATTTTAAAATATT
Found at i:10191 original size:14 final size:14
Alignment explanation
Indices: 10139--10191 Score: 52
Period size: 14 Copynumber: 3.5 Consensus size: 14
10129 ATTTTATATT
*
10139 TATATAAATTTTAA
1 TATATTAATTTTAA
10153 TATATTAATAATTTATA
1 TATATTAAT--TTTA-A
10170 TTATATTAATTTTAA
1 -TATATTAATTTTAA
*
10185 AATATTA
1 TATATTA
10192 TCGATGCAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
14 14 0.42
15 1 0.03
16 8 0.24
17 1 0.03
18 9 0.27
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
TATATTAATTTTAA
Found at i:13956 original size:20 final size:20
Alignment explanation
Indices: 13933--13974 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
13923 AATATAATTT
*
13933 TATAAAAAATAATTAAAATA
1 TATAAAAAATAAATAAAATA
* *
13953 TATAAAATATAAATACAATA
1 TATAAAAAATAAATAAAATA
13973 TA
1 TA
13975 AATTTATGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (20 bp):
TATAAAAAATAAATAAAATA
Found at i:14802 original size:16 final size:16
Alignment explanation
Indices: 14781--14883 Score: 53
Period size: 15 Copynumber: 6.8 Consensus size: 16
14771 TCATGTATAA
14781 AATAAATTATTAATAT
1 AATAAATTATTAATAT
* *
14797 AATAAATTA-TATTTT
1 AATAAATTATTAATAT
* * *
14812 AA-ATATATAATAATTT
1 AATAAAT-TATTAATAT
14828 AAATATAATTA-TAATAT
1 -AATA-AATTATTAATAT
14845 -A-AAA-TATT-ATA-
1 AATAAATTATTAATAT
*
14856 AATAAAATATTAATAT
1 AATAAATTATTAATAT
*
14872 -ATTAATTATTAA
1 AATAAATTATTAA
14884 ATCTATTCGC
Statistics
Matches: 68, Mismatches: 8, Indels: 23
0.69 0.08 0.23
Matches are distributed among these distances:
12 6 0.09
13 6 0.09
14 8 0.12
15 22 0.32
16 14 0.21
17 7 0.10
18 3 0.04
19 2 0.03
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
AATAAATTATTAATAT
Found at i:14843 original size:27 final size:27
Alignment explanation
Indices: 14813--14882 Score: 72
Period size: 27 Copynumber: 2.5 Consensus size: 27
14803 TTATATTTTA
*
14813 AATATATAATAATT-TAAATATAAT-TAT
1 AATATATAAT-ATTATAAATAAAATAT-T
*
14840 AATATAAAATATTATAAATAAAATATT
1 AATATATAATATTATAAATAAAATATT
14867 AATATATTAATTATTA
1 AATATA-TAA-TATTA
14883 AATCTATTCG
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
26 3 0.08
27 25 0.69
28 3 0.08
29 5 0.14
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (27 bp):
AATATATAATATTATAAATAAAATATT
Found at i:14862 original size:14 final size:15
Alignment explanation
Indices: 14776--14867 Score: 71
Period size: 16 Copynumber: 5.8 Consensus size: 15
14766 TTCGATCATG
14776 TATAAAATAAATTATTAA
1 TATAAAAT--ATTA-TAA
*
14794 TATAATAA-ATTATAT
1 TATAA-AATATTATAA
* *
14809 TTTAAATATATAATAA
1 TATAAA-ATATTATAA
*
14825 TTTAAATATAATTATAA
1 TATAAA-AT-ATTATAA
14842 TATAAAATATTATAA
1 TATAAAATATTATAA
14857 -ATAAAATATTA
1 TATAAAATATTA
14868 ATATATTAAT
Statistics
Matches: 64, Mismatches: 6, Indels: 12
0.78 0.07 0.15
Matches are distributed among these distances:
14 12 0.19
15 14 0.22
16 20 0.31
17 11 0.17
18 5 0.08
19 2 0.03
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
TATAAAATATTATAA
Found at i:14864 original size:48 final size:47
Alignment explanation
Indices: 14780--14870 Score: 114
Period size: 48 Copynumber: 1.9 Consensus size: 47
14770 ATCATGTATA
** *
14780 AAATAAATTATTAATATAATAAATTATATTTTAAATATATAATAATTT
1 AAATAAATTATTAATATAATAAATTATAAATAAAATAT-TAATAATTT
14828 AAATATAATTA-TAATATAA-AATATTATAAATAAAATATTAATA
1 AAATA-AATTATTAATATAATAA-ATTATAAATAAAATATTAATA
14871 TATTAATTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
47 7 0.18
48 26 0.68
49 5 0.13
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (47 bp):
AAATAAATTATTAATATAATAAATTATAAATAAAATATTAATAATTT
Found at i:15144 original size:20 final size:20
Alignment explanation
Indices: 15121--15158 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
15111 TTATTTTTAA
15121 ATTTATATAAT-TTTTAATAT
1 ATTTATA-AATATTTTAATAT
*
15141 ATTTTTAAATATTTTAAT
1 ATTTATAAATATTTTAAT
15159 TAATTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (20 bp):
ATTTATAAATATTTTAATAT
Found at i:15170 original size:13 final size:13
Alignment explanation
Indices: 15154--15215 Score: 54
Period size: 13 Copynumber: 4.5 Consensus size: 13
15144 TTTAAATATT
15154 TTAATTAATTTTA
1 TTAATTAATTTTA
15167 TTAATTAAGTTATTA
1 TTAATTAA-TT-TTA
15182 TTTTAATTAA-TTTA
1 --TTAATTAATTTTA
* *
15196 TGATATTAATTTAA
1 TTA-ATTAATTTTA
15210 TTAATT
1 TTAATT
15216 TTTTTAATAT
Statistics
Matches: 40, Mismatches: 3, Indels: 12
0.73 0.05 0.22
Matches are distributed among these distances:
12 2 0.05
13 16 0.40
14 10 0.25
15 4 0.10
17 8 0.20
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (13 bp):
TTAATTAATTTTA
Found at i:15187 original size:17 final size:16
Alignment explanation
Indices: 15150--15228 Score: 65
Period size: 17 Copynumber: 4.8 Consensus size: 16
15140 TATTTTTAAA
15150 TATTTTAATTAATT-T
1 TATTTTAATTAATTAT
15165 TA--TTAATTAAGTTAT
1 TATTTTAATTAA-TTAT
15180 TATTTTAATTAATTTAT
1 TATTTTAATTAA-TTAT
* *
15197 GATATTAATTTAATTAAT
1 TATTTTAA-TTAATT-AT
*
15215 TTTTTTAATATAAT
1 TATTTTAAT-TAAT
15229 ATATAATTTA
Statistics
Matches: 51, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
13 8 0.16
14 2 0.04
15 5 0.10
17 21 0.41
18 15 0.29
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (16 bp):
TATTTTAATTAATTAT
Found at i:15344 original size:4 final size:4
Alignment explanation
Indices: 15335--15369 Score: 52
Period size: 4 Copynumber: 8.8 Consensus size: 4
15325 GATGAGACAA
* *
15335 TTAT TTAT TTAT TTAG TTAT TTAT ATAT TTAT TTA
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTA
15370 ATAGGAGAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.69
Consensus pattern (4 bp):
TTAT
Found at i:15717 original size:8 final size:8
Alignment explanation
Indices: 15704--15794 Score: 50
Period size: 8 Copynumber: 11.4 Consensus size: 8
15694 AATGAATAGA
15704 ATATAATT
1 ATATAATT
15712 ATATAAATAT
1 ATAT-AAT-T
*
15722 ATAAAATTT
1 ATATAA-TT
15731 ATATAATAT
1 ATATAAT-T
*
15740 AAATAATT
1 ATATAATT
15748 A-ATATATT
1 ATATA-ATT
15756 A-A-AATTT
1 ATATAA-TT
*
15763 ATATAAAT
1 ATATAATT
*
15771 ATATAATA
1 ATATAATT
15779 AT-TAA--
1 ATATAATT
15784 ATATAATT
1 ATATAATT
15792 ATA
1 ATA
15795 ACTCATGAAA
Statistics
Matches: 66, Mismatches: 6, Indels: 22
0.70 0.06 0.23
Matches are distributed among these distances:
5 2 0.03
6 4 0.06
7 10 0.15
8 25 0.38
9 20 0.30
10 5 0.08
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (8 bp):
ATATAATT
Found at i:15728 original size:32 final size:32
Alignment explanation
Indices: 15692--15788 Score: 81
Period size: 32 Copynumber: 2.9 Consensus size: 32
15682 ATAAAAATTA
*
15692 AAAATGAATAGAATATAATTATATAAATATA-T
1 AAAATGAATAGAATATAAATA-ATAAATATATT
** * *
15724 AAAATTTATATAATATAAATAATTAATATATT
1 AAAATGAATAGAATATAAATAATAAATATATT
*
15756 AAAATTTATATA-AATATATAATAATTAAATATA
1 AAAA-TGA-ATAGAATATA-AATAA-TAAATATA
15789 ATTATAACTC
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
31 8 0.15
32 22 0.42
33 8 0.15
34 8 0.15
35 7 0.13
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (32 bp):
AAAATGAATAGAATATAAATAATAAATATATT
Found at i:15777 original size:31 final size:31
Alignment explanation
Indices: 15703--15789 Score: 113
Period size: 32 Copynumber: 2.7 Consensus size: 31
15693 AAATGAATAG
* *
15703 AATATAATTATATAAATATATAAAATTTATAT
1 AATATAAATA-ATTAATATATAAAATTTATAT
15735 AATATAAATAATTAATATATTAAAATTTATAT
1 AATATAAATAATTAATATA-TAAAATTTATAT
15767 AAATATATAATAATTAA-ATATAA
1 -AATATA-AATAATTAATATATAA
15790 TTATAACTCA
Statistics
Matches: 50, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
31 8 0.16
32 24 0.48
33 9 0.18
34 9 0.18
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (31 bp):
AATATAAATAATTAATATATAAAATTTATAT
Found at i:15794 original size:27 final size:28
Alignment explanation
Indices: 15703--15795 Score: 85
Period size: 27 Copynumber: 3.5 Consensus size: 28
15693 AAATGAATAG
15703 AATATAATTATATAAATATATAA-AATT-
1 AATATAA-TATATAAATATATAATAATTA
*
15730 TATAT-A-ATATAAATA-ATTAATATATTA
1 AATATAATATATAAATATA-TAATA-ATTA
*
15757 AA-AT-TTATATAAATATATAATAATTA
1 AATATAATATATAAATATATAATAATTA
15783 AATATAAT-TATAA
1 AATATAATATATAA
15796 CTCATGAAAA
Statistics
Matches: 54, Mismatches: 4, Indels: 16
0.73 0.05 0.22
Matches are distributed among these distances:
23 1 0.02
24 12 0.22
25 1 0.02
26 12 0.22
27 26 0.48
28 2 0.04
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (28 bp):
AATATAATATATAAATATATAATAATTA
Found at i:15969 original size:4 final size:4
Alignment explanation
Indices: 15960--15990 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
15950 TTTTTGTTTA
15960 TATG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TAT
15991 ATATTATTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:24107 original size:13 final size:13
Alignment explanation
Indices: 24077--24101 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24067 AAATTAAGCG
24077 TTTATATTTTTTA
1 TTTATATTTTTTA
24090 TTTATATTTTTT
1 TTTATATTTTTT
24102 TATTATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTATATTTTTTA
Found at i:24228 original size:24 final size:24
Alignment explanation
Indices: 24173--24228 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 24
24163 TATATCGTAT
* * *
24173 TTATTTTTTTATTTTATATTTAAA
1 TTATTTTTTAATATTATATTCAAA
* **
24197 TTAATTTTTAATATTATATTCATG
1 TTATTTTTTAATATTATATTCAAA
24221 TTATTTTT
1 TTATTTTT
24229 GTATATTTAA
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.68
Consensus pattern (24 bp):
TTATTTTTTAATATTATATTCAAA
Found at i:24702 original size:15 final size:14
Alignment explanation
Indices: 24681--24716 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
24671 AAGATAGGGG
24681 AAAAAAGAAAAAGTA
1 AAAAAAGAAAAA-TA
*
24696 AATAAAGAAAAATA
1 AAAAAAGAAAAATA
24710 AAAAAAG
1 AAAAAAG
24717 TTTATATATC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 8 0.42
15 11 0.58
ACGTcount: A:0.81, C:0.00, G:0.11, T:0.08
Consensus pattern (14 bp):
AAAAAAGAAAAATA
Found at i:24774 original size:12 final size:12
Alignment explanation
Indices: 24757--24781 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
24747 TTTAAAATAT
24757 TATATTTTTATA
1 TATATTTTTATA
24769 TATATTTTTATA
1 TATATTTTTATA
24781 T
1 T
24782 TGTAATAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TATATTTTTATA
Found at i:25708 original size:22 final size:20
Alignment explanation
Indices: 25681--25720 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
25671 ATATTCATAC
25681 TGTGTTTATATTATTTTTATGT
1 TGTGTTT-TATT-TTTTTATGT
25703 TGTGTTTTATTTTTTTAT
1 TGTGTTTTATTTTTTTAT
25721 ATATATATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 7 0.39
21 4 0.22
22 7 0.39
ACGTcount: A:0.15, C:0.00, G:0.12, T:0.72
Consensus pattern (20 bp):
TGTGTTTTATTTTTTTATGT
Found at i:26218 original size:59 final size:57
Alignment explanation
Indices: 26149--26262 Score: 129
Period size: 59 Copynumber: 2.0 Consensus size: 57
26139 TGTTATGTTC
* *
26149 GTATCGTATCTCAATGCATAATATATTTTACATAATTTGTCATAATAATTTAATTTAAA
1 GTATCATATCTCAATGCATAACAT-TTTTACATAATTTGT-ATAATAATTTAATTTAAA
* ** * * * *
26208 GTATCATATCTTAATTTATAACATTTTTTCATACTTTGTATAGTGATTTAATTTA
1 GTATCATATCTCAATGCATAACATTTTTACATAATTTGTATAATAATTTAATTTA
26263 GAAAAAAAAT
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
57 14 0.30
58 13 0.28
59 19 0.41
ACGTcount: A:0.35, C:0.10, G:0.07, T:0.48
Consensus pattern (57 bp):
GTATCATATCTCAATGCATAACATTTTTACATAATTTGTATAATAATTTAATTTAAA
Found at i:26388 original size:21 final size:20
Alignment explanation
Indices: 26364--26403 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
26354 TTTTATATAA
26364 ATATTTATATATATTCTTATC
1 ATATTTATAT-TATTCTTATC
*
26385 ATATTTATATTATTTTTAT
1 ATATTTATATTATTCTTAT
26404 GTTGTATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (20 bp):
ATATTTATATTATTCTTATC
Found at i:26439 original size:28 final size:28
Alignment explanation
Indices: 26388--26480 Score: 81
Period size: 28 Copynumber: 3.5 Consensus size: 28
26378 TCTTATCATA
* *
26388 TTTATATTATTTTTATGTTGTATTATAT
1 TTTATATTATTTTTATTTTATATTATAT
26416 TTTA-ATTATTTTTTATTTTATATT-TA-
1 TTTATATTA-TTTTTATTTTATATTATAT
* * *
26442 --TATAATA-TCTTAATTTATATTATAT
1 TTTATATTATTTTTATTTTATATTATAT
*
26467 TTTATATAATTTTT
1 TTTATATTATTTTT
26481 TATATAATTA
Statistics
Matches: 50, Mismatches: 8, Indels: 14
0.69 0.11 0.19
Matches are distributed among these distances:
23 12 0.24
24 4 0.08
25 3 0.06
27 11 0.22
28 20 0.40
ACGTcount: A:0.30, C:0.01, G:0.02, T:0.67
Consensus pattern (28 bp):
TTTATATTATTTTTATTTTATATTATAT
Found at i:26470 original size:12 final size:12
Alignment explanation
Indices: 26352--26485 Score: 60
Period size: 12 Copynumber: 10.8 Consensus size: 12
26342 ATTAATAATT
26352 TATTTTATA-TA
1 TATTTTATATTA
*
26363 AATATTTATA-TA
1 TAT-TTTATATTA
* *
26375 TATTCT-TATCA
1 TATTTTATATTA
*
26386 TATTTATATTATTTT
1 TATTT-TA-TA-TTA
* *
26401 TATGTTGTATTA
1 TATTTTATATTA
26413 TATTTTA-ATTA
1 TATTTTATATTA
* *
26424 TTTTTTATTTTA
1 TATTTTATATTA
*
26436 TATTTATATAATATCT
1 TATTT-TAT-AT-T-A
*
26452 TAATTTATATTA
1 TATTTTATATTA
*
26464 TATTTTATATAA
1 TATTTTATATTA
*
26476 TTTTTTATAT
1 TATTTTATAT
26486 AATTAAATTT
Statistics
Matches: 90, Mismatches: 22, Indels: 21
0.68 0.17 0.16
Matches are distributed among these distances:
10 2 0.02
11 19 0.21
12 44 0.49
13 6 0.07
14 6 0.07
15 9 0.10
16 4 0.04
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.63
Consensus pattern (12 bp):
TATTTTATATTA
Found at i:26486 original size:12 final size:12
Alignment explanation
Indices: 26455--26489 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
26445 AATATCTTAA
* *
26455 TTTATATTATAT
1 TTTATATAATTT
26467 TTTATATAATTT
1 TTTATATAATTT
26479 TTTATATAATT
1 TTTATATAATT
26490 AAATTTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (12 bp):
TTTATATAATTT
Found at i:26541 original size:15 final size:15
Alignment explanation
Indices: 26478--26547 Score: 62
Period size: 15 Copynumber: 5.0 Consensus size: 15
26468 TTATATAATT
*
26478 TTTTATATAATTAAA
1 TTTTATTTAATTAAA
26493 TTTTA---AATTTAAA
1 TTTTATTTAA-TTAAA
*
26506 -TTTATTT-TTTAAA
1 TTTTATTTAATTAAA
*
26519 TATT-TTTAATTAAA
1 TTTTATTTAATTAAA
26533 TTTTATTTAATTAAA
1 TTTTATTTAATTAAA
26548 AATTTTATAA
Statistics
Matches: 44, Mismatches: 4, Indels: 14
0.71 0.06 0.23
Matches are distributed among these distances:
12 6 0.14
13 13 0.30
14 10 0.23
15 15 0.34
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
TTTTATTTAATTAAA
Found at i:26553 original size:28 final size:29
Alignment explanation
Indices: 26478--26554 Score: 74
Period size: 28 Copynumber: 2.8 Consensus size: 29
26468 TTATATAATT
*
26478 TTTTATATAATT--AAATTTTAAATTTAAA
1 TTTTATTTAATTAAAAATTTT-AATTTAAA
* *
26506 -TTTATTT-TTTAAATATTTTTAA-TTAAA
1 TTTTATTTAATTAAA-AATTTTAATTTAAA
26533 TTTTATTTAATTAAAAATTTTA
1 TTTTATTTAATTAAAAATTTTA
26555 TAAATATTAA
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
26 2 0.05
27 11 0.28
28 16 0.41
29 10 0.26
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (29 bp):
TTTTATTTAATTAAAAATTTTAATTTAAA
Found at i:28526 original size:24 final size:24
Alignment explanation
Indices: 28499--28550 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
28489 AATAAAAAAA
*
28499 TTAAAT-TAATATAATATAATTTAT
1 TTAAATATAAT-TAATATAATATAT
*
28523 TTAAATATAATTAATTTAATATAT
1 TTAAATATAATTAATATAATATAT
28547 TTAA
1 TTAA
28551 TACATATATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 21 0.84
25 4 0.16
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (24 bp):
TTAAATATAATTAATATAATATAT
Found at i:28531 original size:15 final size:14
Alignment explanation
Indices: 28510--28549 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 14
28500 TAAATTAATA
28510 TAATATAATTTATT
1 TAATATAATTTATT
*
28524 TAAATATAATTAATT
1 T-AATATAATTTATT
28539 TAATAT-ATTTA
1 TAATATAATTTA
28550 ATACATATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
13 4 0.17
14 6 0.26
15 13 0.57
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
TAATATAATTTATT
Found at i:28545 original size:14 final size:14
Alignment explanation
Indices: 28502--28551 Score: 64
Period size: 14 Copynumber: 3.5 Consensus size: 14
28492 AAAAAAATTA
*
28502 AATTAATATAATAT
1 AATTAATTTAATAT
*
28516 AATTTATTTAAATAT
1 AATTAATTT-AATAT
28531 AATTAATTTAATAT
1 AATTAATTTAATAT
*
28545 ATTTAAT
1 AATTAAT
28552 ACATATATTA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
14 18 0.58
15 13 0.42
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
AATTAATTTAATAT
Found at i:28559 original size:29 final size:29
Alignment explanation
Indices: 28502--28558 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
28492 AAAAAAATTA
*
28502 AATTAATATAATATAATTTATTTAAATAT
1 AATTAATATAATATAATTTATATAAATAT
* *
28531 AATTAATTTAATAT-ATTTA-ATACATAT
1 AATTAATATAATATAATTTATATAAATAT
28558 A
1 A
28559 TTATATTCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 7 0.28
28 5 0.20
29 13 0.52
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (29 bp):
AATTAATATAATATAATTTATATAAATAT
Found at i:31116 original size:16 final size:16
Alignment explanation
Indices: 31068--31126 Score: 52
Period size: 16 Copynumber: 3.7 Consensus size: 16
31058 TTTAATATTT
31068 AAAAT-AATTTAAATA
1 AAAATAAATTTAAATA
* *
31083 AAAATATTATGTT--TTA
1 AAAATA-AAT-TTAAATA
31099 AAAATAAATTTAAATA
1 AAAATAAATTTAAATA
31115 AAAATTAAATTT
1 AAAA-TAAATTT
31127 CATTTAAGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
14 2 0.06
15 7 0.21
16 14 0.41
17 9 0.26
18 2 0.06
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (16 bp):
AAAATAAATTTAAATA
Found at i:32042 original size:14 final size:14
Alignment explanation
Indices: 32000--32046 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
31990 AAATTATTAA
*
32000 AAATT-ATTAAAAGT
1 AAATTAATTAATA-T
*
32014 AAAATAATT-ATAT
1 AAATTAATTAATAT
32027 AAATTAATTAATAT
1 AAATTAATTAATAT
32041 AAATTA
1 AAATTA
32047 CGGTGAGCAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
13 9 0.32
14 16 0.57
15 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (14 bp):
AAATTAATTAATAT
Found at i:33900 original size:22 final size:20
Alignment explanation
Indices: 33874--33919 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
33864 TTATTTAATA
*
33874 AAATAATAATTTTAATATTTTT
1 AAATAATAA-TTTAA-ATTTAT
33896 AAATAATAATTTAAATTTAT
1 AAATAATAATTTAAATTTAT
33916 AAAT
1 AAAT
33920 TAAACCAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 9 0.39
21 5 0.22
22 9 0.39
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
AAATAATAATTTAAATTTAT
Found at i:34479 original size:26 final size:25
Alignment explanation
Indices: 34436--34484 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
34426 TTTGTCCAGT
*
34436 TTTAATTTGAGTTATAATTATATATA
1 TTTAATTTAAGTTATAATT-TATATA
* *
34462 TTTAATTTAATTTTTAATTTATA
1 TTTAATTTAAGTTATAATTTATA
34485 AAGTAAAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 4 0.20
26 16 0.80
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (25 bp):
TTTAATTTAAGTTATAATTTATATA
Found at i:38395 original size:24 final size:23
Alignment explanation
Indices: 38368--38420 Score: 54
Period size: 24 Copynumber: 2.2 Consensus size: 23
38358 AATTTTTTAA
38368 ATTTAAATT-TTTATATCATATTAT
1 ATTTAAATTATTT-T-TCATATTAT
* *
38392 ATTTTTAATTATTTTTTATATTAT
1 A-TTTAAATTATTTTTCATATTAT
38416 ATTTA
1 ATTTA
38421 TGTTTAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
23 3 0.12
24 10 0.42
25 8 0.33
26 3 0.12
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (23 bp):
ATTTAAATTATTTTTCATATTAT
Found at i:38414 original size:12 final size:13
Alignment explanation
Indices: 38385--38419 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
38375 TTTTTATATC
38385 ATATTATATTTTT
1 ATATTATATTTTT
38398 A-ATTAT-TTTTT
1 ATATTATATTTTT
38409 ATATTATATTT
1 ATATTATATTT
38420 ATGTTTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 6 0.30
12 10 0.50
13 4 0.20
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
ATATTATATTTTT
Found at i:40514 original size:16 final size:16
Alignment explanation
Indices: 40476--40524 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
40466 ATAAATTTAA
*
40476 AAATTTTAATA-AATAT
1 AAATTTAAATATAA-AT
40492 AAA-TTAAATATAAAT
1 AAATTTAAATATAAAT
*
40507 AAATTTAAAAATAAAT
1 AAATTTAAATATAAAT
40523 AA
1 AA
40525 CCAAATACAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
15 11 0.38
16 18 0.62
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AAATTTAAATATAAAT
Found at i:40515 original size:10 final size:10
Alignment explanation
Indices: 40460--40515 Score: 53
Period size: 10 Copynumber: 5.7 Consensus size: 10
40450 AATCATATAT
*
40460 ATTTATATAA
1 ATTTAAATAA
40470 ATTT-AA-AA
1 ATTTAAATAA
*
40478 ATTTTAATAA
1 ATTTAAATAA
*
40488 ATATAAATTAA
1 ATTTAAA-TAA
*
40499 ATATAAATAA
1 ATTTAAATAA
40509 ATTTAAA
1 ATTTAAA
40516 AATAAATAAC
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
8 6 0.15
9 3 0.08
10 20 0.51
11 10 0.26
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (10 bp):
ATTTAAATAA
Found at i:44502 original size:2 final size:2
Alignment explanation
Indices: 44495--44526 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
44485 CAATTTATTA
44495 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
44527 TTTTTTTGAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:44726 original size:22 final size:21
Alignment explanation
Indices: 44701--44745 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
44691 TTGATATAAG
44701 TATTT-AATATGTTGAATTTCAA
1 TATTTGAATAT-TTG-ATTTCAA
*
44723 TATTTGAATATTTGATTTTAA
1 TATTTGAATATTTGATTTCAA
44744 TA
1 TA
44746 AATTATTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 8 0.38
22 8 0.38
23 5 0.24
ACGTcount: A:0.36, C:0.02, G:0.09, T:0.53
Consensus pattern (21 bp):
TATTTGAATATTTGATTTCAA
Found at i:45038 original size:15 final size:15
Alignment explanation
Indices: 45010--45050 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
45000 ATATAATTTT
*
45010 TTAAATAAATAAAAA
1 TTAAATATATAAAAA
45025 -TAATATATATAAAAA
1 TTAA-ATATATAAAAA
45040 TTAAATATATA
1 TTAAATATATA
45051 TTTATATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 17 0.74
16 3 0.13
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (15 bp):
TTAAATATATAAAAA
Found at i:45048 original size:17 final size:17
Alignment explanation
Indices: 45010--45051 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 17
45000 ATATAATTTT
45010 TTAAATA-A-ATAAAAA
1 TTAAATATATATAAAAA
45025 -T-AATATATATAAAAA
1 TTAAATATATATAAAAA
45040 TTAAATATATAT
1 TTAAATATATAT
45052 TTATATTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
13 4 0.17
14 2 0.09
15 7 0.30
16 1 0.04
17 9 0.39
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
TTAAATATATATAAAAA
Found at i:45789 original size:34 final size:35
Alignment explanation
Indices: 45750--45817 Score: 95
Period size: 34 Copynumber: 2.0 Consensus size: 35
45740 TAGATACAAT
*
45750 TATATGTTTC-ACACGAATATATTTAA-TTTTTTTA
1 TATATG-TTCGACACAAATATATTTAACTTTTTTTA
*
45784 TATATGTTCGATACAAATATATTTAACTTTTTTT
1 TATATGTTCGACACAAATATATTTAACTTTTTTT
45818 TCAAATTTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
33 3 0.10
34 20 0.67
35 7 0.23
ACGTcount: A:0.32, C:0.09, G:0.06, T:0.53
Consensus pattern (35 bp):
TATATGTTCGACACAAATATATTTAACTTTTTTTA
Found at i:49307 original size:17 final size:17
Alignment explanation
Indices: 49285--49334 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
49275 TTTAAAATTA
49285 ATTTAATTTAAATTATT
1 ATTTAATTTAAATTATT
*
49302 ATTTAA-TTAAATATTTT
1 ATTTAATTTAAAT-TATT
49319 ATTTAAATTT-AATTAT
1 ATTT-AATTTAAATTAT
49335 AAAATAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
16 6 0.21
17 15 0.54
18 5 0.18
19 2 0.07
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
ATTTAATTTAAATTATT
Found at i:49357 original size:19 final size:20
Alignment explanation
Indices: 49333--49372 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
49323 AAATTTAATT
49333 ATAAAATAAATAT-TAAATA
1 ATAAAATAAATATATAAATA
* *
49352 ATAAAATTAATTTATAAATA
1 ATAAAATAAATATATAAATA
49372 A
1 A
49373 ATTCAAACCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (20 bp):
ATAAAATAAATATATAAATA
Found at i:50202 original size:23 final size:23
Alignment explanation
Indices: 50176--50263 Score: 61
Period size: 23 Copynumber: 3.7 Consensus size: 23
50166 TATTATAAAA
50176 TAATATATTTAAATATTTAAATT
1 TAATATATTTAAATATTTAAATT
* *
50199 TAATATTTATTTATATAATTAATATT
1 TAATA--TATTTAAATATTTAA-ATT
* * * *
50225 T-ATTTAATTTAAATGTTTTATTT
1 TAATAT-ATTTAAATATTTAAATT
* *
50248 TAATAAATTAAAATAT
1 TAATATATTTAAATAT
50264 CTAATAAATA
Statistics
Matches: 48, Mismatches: 12, Indels: 10
0.69 0.17 0.14
Matches are distributed among these distances:
23 17 0.35
24 12 0.25
25 15 0.31
26 4 0.08
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (23 bp):
TAATATATTTAAATATTTAAATT
Found at i:51322 original size:15 final size:16
Alignment explanation
Indices: 51302--51338 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
51292 AATATCAATT
51302 TTTATATATT-TATTA
1 TTTATATATTATATTA
51317 TTTATAT-TTATATTA
1 TTTATATATTATATTA
51332 TTT-TATA
1 TTTATATA
51339 AAAAATATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 5 0.25
15 15 0.75
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TTTATATATTATATTA
Found at i:52562 original size:31 final size:32
Alignment explanation
Indices: 52517--52603 Score: 83
Period size: 31 Copynumber: 2.8 Consensus size: 32
52507 TATTGTATAT
* *
52517 TATA-TTTTAAATAATATATAATATAGAT-GA
1 TATATTTTTATATAATATATAATATAGATAAA
* *
52547 TATATTTTTATATAAT-TTTAA-ATTATATAAA
1 TATATTTTTATATAATATATAATA-TAGATAAA
* *
52578 TATATTTTTATATTATATAAAATATA
1 TATATTTTTATATAATATATAATATA
52604 ATTAAAAATA
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
29 1 0.02
30 12 0.27
31 26 0.58
32 5 0.11
33 1 0.02
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (32 bp):
TATATTTTTATATAATATATAATATAGATAAA
Found at i:52586 original size:21 final size:22
Alignment explanation
Indices: 52556--52606 Score: 77
Period size: 21 Copynumber: 2.4 Consensus size: 22
52546 ATATATTTTT
52556 ATATAATTTTAAATTATAT-AA
1 ATATAATTTTAAATTATATAAA
* *
52577 ATATATTTTTATATTATATAAA
1 ATATAATTTTAAATTATATAAA
52599 ATATAATT
1 ATATAATT
52607 AAAAATAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 17 0.65
22 9 0.35
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
ATATAATTTTAAATTATATAAA
Found at i:52859 original size:2 final size:2
Alignment explanation
Indices: 52852--52885 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
52842 TTTTGTGCAA
*
52852 AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
52886 CGTAGATTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:54232 original size:12 final size:12
Alignment explanation
Indices: 54215--54245 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
54205 GATCTTCCAC
54215 CTGCAACCGCAA
1 CTGCAACCGCAA
*
54227 CTGCAACCGGAA
1 CTGCAACCGCAA
54239 CTGCAAC
1 CTGCAAC
54246 ATCCTTTGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.32, C:0.39, G:0.19, T:0.10
Consensus pattern (12 bp):
CTGCAACCGCAA
Found at i:54869 original size:29 final size:29
Alignment explanation
Indices: 54837--54922 Score: 84
Period size: 29 Copynumber: 2.9 Consensus size: 29
54827 TAAAATATAA
*
54837 ATATAAATTATTAAATTTATTAATATTTT
1 ATATAAATTATTAAATTTATTAATATATT
* * *
54866 ATATAAA-TATGATATATATTAAATATATT
1 ATATAAATTATTAAATTTATT-AATATATT
*
54895 ATATTAATTATATATAAATTTATTAATA
1 ATA-TAAAT-TAT-TAAATTTATTAATA
54923 ATGTCATATT
Statistics
Matches: 44, Mismatches: 8, Indels: 7
0.75 0.14 0.12
Matches are distributed among these distances:
28 10 0.23
29 17 0.39
30 3 0.07
32 7 0.16
33 7 0.16
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (29 bp):
ATATAAATTATTAAATTTATTAATATATT
Found at i:54890 original size:16 final size:15
Alignment explanation
Indices: 54816--54910 Score: 67
Period size: 14 Copynumber: 6.5 Consensus size: 15
54806 TTGGTGTTTT
*
54816 TATATATATAGTAAA
1 TATATATATATTAAA
*
54831 -ATATAAATA-TAAA
1 TATATATATATTAAA
* *
54844 TTATTAAATTTATT-AA
1 -TA-TATATATATTAAA
*
54860 TAT-TTTATA-TAAA
1 TATATATATATTAAA
54873 TATGATATATATTAAA
1 TAT-ATATATATTAAA
*
54889 TATAT-TATATTAAT
1 TATATATATATTAAA
54903 TATATATA
1 TATATATA
54911 AATTTATTAA
Statistics
Matches: 62, Mismatches: 9, Indels: 18
0.70 0.10 0.20
Matches are distributed among these distances:
12 1 0.02
13 12 0.19
14 22 0.35
15 12 0.19
16 14 0.23
17 1 0.02
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (15 bp):
TATATATATATTAAA
Found at i:54909 original size:40 final size:35
Alignment explanation
Indices: 54831--54920 Score: 96
Period size: 35 Copynumber: 2.6 Consensus size: 35
54821 ATATAGTAAA
* *
54831 ATATAAATATAAATTATTAAATTTATTAATATTTT
1 ATATAAATATAAATTATTAAATATATTAATATTAT
*
54866 ATATAAATATGATATATATTAAATATATT-ATATTA-
1 ATATAAATAT-AAAT-TATTAAATATATTAATATTAT
*
54901 AT-TATATATAAATTTATTAA
1 ATATAAATATAAA-TTATTAA
54921 TAATGTCATA
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
33 8 0.17
34 7 0.15
35 12 0.26
36 8 0.17
37 12 0.26
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (35 bp):
ATATAAATATAAATTATTAAATATATTAATATTAT
Found at i:55312 original size:22 final size:22
Alignment explanation
Indices: 55280--55327 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
55270 AATAAAATAT
55280 TATATTATTAT-ATTAATATTTA
1 TATATTATTATAATTAA-ATTTA
*
55302 TATATTTTTATAATTAAATTTA
1 TATATTATTATAATTAAATTTA
55324 TATA
1 TATA
55328 AAAATAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (22 bp):
TATATTATTATAATTAAATTTA
Found at i:56357 original size:13 final size:13
Alignment explanation
Indices: 56341--56383 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
56331 TTAATTAATT
56341 ATAATAAATATTA
1 ATAATAAATATTA
56354 ATAATAAATA-T-
1 ATAATAAATATTA
*
56365 ATAAAAAATATTCA
1 ATAATAAATATT-A
56379 ATAAT
1 ATAAT
56384 TATTATAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
11 9 0.36
12 2 0.08
13 10 0.40
14 4 0.16
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (13 bp):
ATAATAAATATTA
Found at i:56678 original size:21 final size:23
Alignment explanation
Indices: 56636--56682 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
56626 TAAAATTTAA
*
56636 ATAACATATATTTTGATATAAAT
1 ATAACATATAATTTGATATAAAT
*
56659 ATAAGATATAATTT-AT-TAAAT
1 ATAACATATAATTTGATATAAAT
56680 ATA
1 ATA
56683 TAAAAAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 8 0.36
22 2 0.09
23 12 0.55
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.43
Consensus pattern (23 bp):
ATAACATATAATTTGATATAAAT
Found at i:59369 original size:18 final size:16
Alignment explanation
Indices: 59348--59414 Score: 57
Period size: 18 Copynumber: 4.0 Consensus size: 16
59338 TATAATATAA
59348 TTTATTAATATATCAAAT
1 TTTATTAA-ATAT-AAAT
59366 TTTATATAAATATAAAAT
1 TTTAT-TAAATAT-AAAT
*
59384 ATT-TTAAATAT-AAT
1 TTTATTAAATATAAAT
*
59398 TTTATTATAATAAAAAT
1 TTTATTA-AATATAAAT
59415 ATAATATGTA
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
14 5 0.12
15 3 0.07
16 11 0.27
17 4 0.10
18 15 0.37
19 3 0.07
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (16 bp):
TTTATTAAATATAAAT
Found at i:59409 original size:16 final size:17
Alignment explanation
Indices: 59338--59436 Score: 52
Period size: 18 Copynumber: 5.9 Consensus size: 17
59328 TTAAAATTAA
59338 TATAATAT-AA-TTTAT
1 TATAATATAAATTTTAT
59353 TA-ATATATCAAATTTTA-
1 TATA-ATAT-AAATTTTAT
*
59370 TATAAATATAAAATATT-T
1 TAT-AATAT-AAATTTTAT
59388 TA-AATAT-AATTTTAT
1 TATAATATAAATTTTAT
* *
59403 TATAATAAAAATATAATAT
1 TATAATATAAAT-T-TTAT
59422 GTAT-ATATAAATTTT
1 -TATAATATAAATTTT
59437 TAATTTTTTT
Statistics
Matches: 64, Mismatches: 7, Indels: 24
0.67 0.07 0.25
Matches are distributed among these distances:
14 6 0.09
15 9 0.14
16 9 0.14
17 8 0.12
18 18 0.28
19 11 0.17
20 3 0.05
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (17 bp):
TATAATATAAATTTTAT
Found at i:59428 original size:22 final size:21
Alignment explanation
Indices: 59389--59432 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
59379 AAAATATTTT
*
59389 AAATATAATTTTATTATAATAA
1 AAATATAATTGTATTAT-ATAA
59411 AAATATAATATGTA-TATATAA
1 AAATATAAT-TGTATTATATAA
59432 A
1 A
59433 TTTTTAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 5 0.25
22 12 0.60
23 3 0.15
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (21 bp):
AAATATAATTGTATTATATAA
Found at i:59707 original size:14 final size:14
Alignment explanation
Indices: 59688--59717 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
59678 TATATTTATC
*
59688 AAAATAATTTTTAA
1 AAAATAAATTTTAA
59702 AAAATAAATTTTAA
1 AAAATAAATTTTAA
59716 AA
1 AA
59718 TTTCTTCTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
AAAATAAATTTTAA
Found at i:60545 original size:14 final size:16
Alignment explanation
Indices: 60528--60559 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
60518 TTAAATAAAA
60528 TTAATATA-A-TATTT
1 TTAATATATATTATTT
60542 TTAATATATATTATTT
1 TTAATATATATTATTT
60558 TT
1 TT
60560 GTATTTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 1 0.06
16 7 0.44
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TTAATATATATTATTT
Found at i:66354 original size:16 final size:16
Alignment explanation
Indices: 66333--66379 Score: 71
Period size: 16 Copynumber: 3.1 Consensus size: 16
66323 AGTTTAGTCA
66333 TATTTTAAATTTAAAT
1 TATTTTAAATTTAAAT
66349 TATTTTAAATTTAAAT
1 TATTTTAAATTTAAAT
*
66365 TA-ATT-AATTTAAAT
1 TATTTTAAATTTAAAT
66379 T
1 T
66380 TTTATTTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
14 10 0.33
15 2 0.07
16 18 0.60
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
TATTTTAAATTTAAAT
Found at i:66375 original size:20 final size:22
Alignment explanation
Indices: 66336--66380 Score: 67
Period size: 20 Copynumber: 2.1 Consensus size: 22
66326 TTAGTCATAT
*
66336 TTTAAATTTAAATTATTTTAAA
1 TTTAAATTTAAATTAATTTAAA
66358 TTTAAA-TT-AATTAATTTAAA
1 TTTAAATTTAAATTAATTTAAA
66378 TTT
1 TTT
66381 TTATTTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 14 0.64
21 2 0.09
22 6 0.27
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (22 bp):
TTTAAATTTAAATTAATTTAAA
Found at i:69711 original size:2 final size:2
Alignment explanation
Indices: 69704--69733 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
69694 GAGGAGAGTT
69704 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
69734 ACTGTTGCCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:73198 original size:30 final size:30
Alignment explanation
Indices: 73155--73238 Score: 91
Period size: 30 Copynumber: 2.8 Consensus size: 30
73145 TTAAAAAAAT
* *
73155 TTTAAGTATAAATTAAAAATTATACTTTTA
1 TTTAAGTAAAAATTAAAAATTAAACTTTTA
*
73185 TTTGAA-TAAAAATT-AAAGTTAAAACTTTTA
1 TTT-AAGTAAAAATTAAAAATT-AAACTTTTA
* *
73215 TTTAAGTATAAACTAAAAATTAAA
1 TTTAAGTAAAAATTAAAAATTAAA
73239 AACTTATTTA
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
29 7 0.16
30 30 0.68
31 7 0.16
ACGTcount: A:0.51, C:0.04, G:0.05, T:0.40
Consensus pattern (30 bp):
TTTAAGTAAAAATTAAAAATTAAACTTTTA
Found at i:73479 original size:42 final size:43
Alignment explanation
Indices: 73408--73491 Score: 143
Period size: 43 Copynumber: 2.0 Consensus size: 43
73398 TTGCAATTTT
*
73408 TTAATAATTCGTTTTAAACAAATTAATTTGACAAAACCATGAA
1 TTAATAATTCGTTTAAAACAAATTAATTTGACAAAACCATGAA
*
73451 TTAATTATTCGTTTAAAACAAA-TAATTTGACAAAACCATGA
1 TTAATAATTCGTTTAAAACAAATTAATTTGACAAAACCATGA
73492 TTCACATTAC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
42 19 0.49
43 20 0.51
ACGTcount: A:0.46, C:0.12, G:0.07, T:0.35
Consensus pattern (43 bp):
TTAATAATTCGTTTAAAACAAATTAATTTGACAAAACCATGAA
Found at i:73809 original size:24 final size:21
Alignment explanation
Indices: 73788--73832 Score: 58
Period size: 19 Copynumber: 2.2 Consensus size: 21
73778 TTTAATTTTG
73788 AATTTTTATAATAATTATATTT
1 AATTTTT-TAATAATTATATTT
*
73810 AATTTTTTATTAATT-T-TTT
1 AATTTTTTAATAATTATATTT
73829 AATT
1 AATT
73833 AAATTAATGT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 7 0.32
20 1 0.05
21 7 0.32
22 7 0.32
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (21 bp):
AATTTTTTAATAATTATATTT
Found at i:74702 original size:12 final size:12
Alignment explanation
Indices: 74663--74703 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
74653 TTATTTTATT
*
74663 ATTTAAAATTAA
1 ATTTATAATTAA
* *
74675 ATTAATATTTAA
1 ATTTATAATTAA
74687 ATTTATAATTAA
1 ATTTATAATTAA
74699 ATTTA
1 ATTTA
74704 AATAAAAAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (12 bp):
ATTTATAATTAA
Found at i:74706 original size:18 final size:18
Alignment explanation
Indices: 74662--74706 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
74652 TTTATTTTAT
*
74662 TATTTAAAATTAAATTAA
1 TATTTAAATTTAAATTAA
74680 TATTTAAATTTATAATTAA
1 TATTTAAATTTA-AATTAA
74699 -ATTTAAAT
1 TATTTAAAT
74707 AAAAAATTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 19 0.76
19 6 0.24
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TATTTAAATTTAAATTAA
Found at i:74714 original size:18 final size:19
Alignment explanation
Indices: 74673--74714 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
74663 ATTTAAAATT
**
74673 AAATTAATATTTAAATTTA
1 AAATTAATATTTAAATAAA
*
74692 TAATTAA-ATTTAAATAAA
1 AAATTAATATTTAAATAAA
74710 AAATT
1 AAATT
74715 TATTAACACC
Statistics
Matches: 19, Mismatches: 4, Indels: 1
0.79 0.17 0.04
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (19 bp):
AAATTAATATTTAAATAAA
Found at i:75409 original size:18 final size:17
Alignment explanation
Indices: 75376--75412 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
75366 CACCTTGGTG
75376 TATGTATACTAAAAATT
1 TATGTATACTAAAAATT
* *
75393 TATGTATATTAAAAAAT
1 TATGTATACTAAAAATT
75410 TAT
1 TAT
75413 ATTCATAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.49, C:0.03, G:0.05, T:0.43
Consensus pattern (17 bp):
TATGTATACTAAAAATT
Found at i:76950 original size:23 final size:23
Alignment explanation
Indices: 76920--76965 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
76910 TTATTATAAT
*
76920 TAATTATAATAATATTAAATATA
1 TAATTATAATAATAATAAATATA
*
76943 TAATTATAATCATAATAAATATA
1 TAATTATAATAATAATAAATATA
76966 ATATGATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (23 bp):
TAATTATAATAATAATAAATATA
Found at i:76957 original size:29 final size:31
Alignment explanation
Indices: 76920--76979 Score: 81
Period size: 29 Copynumber: 2.0 Consensus size: 31
76910 TTATTATAAT
*
76920 TAATTATAAT-AATATTAA-AT-ATATAATTA
1 TAATCATAATAAATA-TAATATGATATAATTA
76949 TAATCATAATAAATATAATATGATATAATTA
1 TAATCATAATAAATATAATATGATATAATTA
76980 AAAATACGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
29 12 0.44
30 6 0.22
31 9 0.33
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (31 bp):
TAATCATAATAAATATAATATGATATAATTA
Found at i:78051 original size:22 final size:23
Alignment explanation
Indices: 77998--78064 Score: 91
Period size: 22 Copynumber: 2.9 Consensus size: 23
77988 AAAAACTTAA
* *
77998 ATATTATTAATTTATTTTATTATT
1 ATATTTTTAATTTAATTTA-TATT
*
78022 ATAATTTTAATTTAATTTATA-T
1 ATATTTTTAATTTAATTTATATT
78044 ATATTTTTAATTTAATTTATA
1 ATATTTTTAATTTAATTTATA
78065 AATAAAGATA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
22 21 0.54
23 2 0.05
24 16 0.41
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (23 bp):
ATATTTTTAATTTAATTTATATT
Found at i:78509 original size:16 final size:16
Alignment explanation
Indices: 78488--78522 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
78478 ATAATATATC
78488 ATATTTAATATTTAAT
1 ATATTTAATATTTAAT
* *
78504 ATATTTATTATTTTAT
1 ATATTTAATATTTAAT
78520 ATA
1 ATA
78523 ATATTTATAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
ATATTTAATATTTAAT
Found at i:78693 original size:15 final size:15
Alignment explanation
Indices: 78647--78700 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
78637 TATATATGTG
*
78647 ATAATT-TATGTATTT
1 ATAATTATAT-TATAT
78662 AT-ATTATATT-TAT
1 ATAATTATATTATAT
78675 ATAATT-TATTATAT
1 ATAATTATATTATAT
78689 CATAATTATATT
1 -ATAATTATATT
78701 TAAAATATTT
Statistics
Matches: 33, Mismatches: 1, Indels: 9
0.77 0.02 0.21
Matches are distributed among these distances:
13 8 0.24
14 10 0.30
15 11 0.33
16 4 0.12
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (15 bp):
ATAATTATATTATAT
Found at i:79319 original size:20 final size:21
Alignment explanation
Indices: 79277--79320 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
79267 GAGGGGAAAG
**
79277 TATTTTTTAAAAAATATGTAAA
1 TATTTTTT-AAAAATATAAAAA
79299 TATTTTTT-AAAATATAAAAA
1 TATTTTTTAAAAATATAAAAA
79319 TA
1 TA
79321 ATAATTATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 12 0.60
22 8 0.40
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (21 bp):
TATTTTTTAAAAATATAAAAA
Found at i:79833 original size:12 final size:14
Alignment explanation
Indices: 79823--79866 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 14
79813 TTAATAATTT
79823 TAAATATAATTATA
1 TAAATATAATTATA
79837 TAAATATAATATATA
1 TAAATATAAT-TATA
79852 TATAA-AGTAATTATA
1 TA-AATA-TAATTATA
79867 ATATAATACG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 10 0.37
15 11 0.41
16 6 0.22
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (14 bp):
TAAATATAATTATA
Found at i:80321 original size:22 final size:22
Alignment explanation
Indices: 80295--80336 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
80285 AAATACGATT
80295 ATAATAT-AATAAAATATAAAAA
1 ATAATATGAA-AAAATATAAAAA
*
80317 ATAATATGAAAATATATAAA
1 ATAATATGAAAAAATATAAA
80337 TTATGAAATC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (22 bp):
ATAATATGAAAAAATATAAAAA
Found at i:80323 original size:49 final size:49
Alignment explanation
Indices: 80227--80323 Score: 110
Period size: 49 Copynumber: 2.0 Consensus size: 49
80217 GTATGTATCA
* * * *
80227 AAATATTTTTAATATGATTATTAACATATAAAAAATTAATATAAATATT
1 AAATATTTTAAATACGATTATTAACATATAAAAAATTAAAAAAAATATT
80276 AAATATTTTAAATACGATTA-T-A-ATATAATAAAATATAAAAAATAATAT
1 AAATATTTTAAATACGATTATTAACATATAA-AAAAT-TAAAAAA-AATAT
80324 GAAAATATAT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
46 6 0.15
47 6 0.15
48 6 0.15
49 23 0.56
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (49 bp):
AAATATTTTAAATACGATTATTAACATATAAAAAATTAAAAAAAATATT
Found at i:80916 original size:2 final size:2
Alignment explanation
Indices: 80909--80935 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
80899 GAGATTGTTC
80909 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
80936 GAGAGAGAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:80940 original size:2 final size:2
Alignment explanation
Indices: 80935--80962 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
80925 ATATATATAT
80935 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
80963 CAACATTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:81986 original size:22 final size:23
Alignment explanation
Indices: 81945--81987 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
81935 TACATTCATA
* *
81945 TTTTTATCTCAAAATTATAATCT
1 TTTTTATATCAAAATAATAATCT
81968 TTTTTATATCAAAA-AATAAT
1 TTTTTATATCAAAATAATAAT
81988 ATATAAACAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.49
Consensus pattern (23 bp):
TTTTTATATCAAAATAATAATCT
Found at i:83816 original size:24 final size:23
Alignment explanation
Indices: 83764--83818 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 23
83754 ATATTTTATC
83764 AATAAATT-ATATCATAAATAAT
1 AATAAATTAATATCATAAATAAT
*
83786 AAAAAATTAATATTCATAAATACA-
1 AATAAATTAATA-TCATAAATA-AT
83810 AATAAATTA
1 AATAAATTA
83819 TAATTAATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 7 0.25
23 3 0.11
24 17 0.61
25 1 0.04
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (23 bp):
AATAAATTAATATCATAAATAAT
Found at i:84169 original size:5 final size:5
Alignment explanation
Indices: 84159--84191 Score: 57
Period size: 5 Copynumber: 6.4 Consensus size: 5
84149 ACTGTTATAA
84159 TTATT TTATT TTATT TTAATT TTATT TTATT TT
1 TTATT TTATT TTATT TT-ATT TTATT TTATT TT
84192 TAAAATAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 22 0.81
6 5 0.19
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTATT
Found at i:84180 original size:11 final size:11
Alignment explanation
Indices: 84159--84260 Score: 73
Period size: 11 Copynumber: 8.9 Consensus size: 11
84149 ACTGTTATAA
84159 TTATTTT-ATT
1 TTATTTTAATT
84169 TTATTTTAATT
1 TTATTTTAATT
*
84180 TTATTTTATTT
1 TTATTTTAATT
**
84191 TTAAAATAATAATT
1 TT---ATTTTAATT
*
84205 TTATTATAATT
1 TTATTTTAATT
*
84216 TTATTTTATTT
1 TTATTTTAATT
*
84227 TTAAATAATT-ATT
1 TT--AT-TTTAATT
*
84240 TTATTATAATT
1 TTATTTTAATT
84251 TTATTTTAAT
1 TTATTTTAAT
84261 AAATCAAATT
Statistics
Matches: 72, Mismatches: 12, Indels: 15
0.73 0.12 0.15
Matches are distributed among these distances:
10 8 0.11
11 48 0.67
13 6 0.08
14 10 0.14
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (11 bp):
TTATTTTAATT
Found at i:84241 original size:35 final size:36
Alignment explanation
Indices: 84164--84258 Score: 165
Period size: 35 Copynumber: 2.7 Consensus size: 36
84154 TATAATTATT
*
84164 TTATTTTATTTTAATTTTATTTTATTTTTAAAATAA
1 TTATTTTATTATAATTTTATTTTATTTTTAAAATAA
*
84200 TAATTTTATTATAATTTTATTTTATTTTT-AAATAA
1 TTATTTTATTATAATTTTATTTTATTTTTAAAATAA
84235 TTATTTTATTATAATTTTATTTTA
1 TTATTTTATTATAATTTTATTTTA
84259 ATAAATCAAA
Statistics
Matches: 56, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
35 29 0.52
36 27 0.48
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (36 bp):
TTATTTTATTATAATTTTATTTTATTTTTAAAATAA
Found at i:84274 original size:35 final size:33
Alignment explanation
Indices: 84164--84281 Score: 114
Period size: 35 Copynumber: 3.4 Consensus size: 33
84154 TATAATTATT
* *
84164 TTATTTTATTTTAATTTTATTTTATTTTTAAAATAA
1 TTATTTTATTATAATTTTATTTTA--TAT-AAATAA
* *
84200 TAATTTTATTATAATTTTATTTTATTTTTAAATAA
1 TTATTTTATTATAATTTTATTTTA--TATAAATAA
84235 TTATTTTATTATAATTTTATTTTA-ATAAATCAAA
1 TTATTTTATTATAATTTTATTTTATATAAAT--AA
*
84269 TT-TATTATTATAA
1 TTATTTTATTATAA
84282 ATATTAAAAT
Statistics
Matches: 75, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
32 5 0.07
33 10 0.13
34 4 0.05
35 29 0.39
36 27 0.36
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.62
Consensus pattern (33 bp):
TTATTTTATTATAATTTTATTTTATATAAATAA
Found at i:86772 original size:13 final size:13
Alignment explanation
Indices: 86754--86781 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
86744 ATAAAATTAT
86754 TTTTTTAATTTAC
1 TTTTTTAATTTAC
86767 TTTTTTAATTTAC
1 TTTTTTAATTTAC
86780 TT
1 TT
86782 CATAGTCGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.07, G:0.00, T:0.71
Consensus pattern (13 bp):
TTTTTTAATTTAC
Found at i:86857 original size:28 final size:26
Alignment explanation
Indices: 86819--86872 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 26
86809 TTTTAATGTG
86819 TAAATTTTTTAAAACATAT-AAATAAA
1 TAAATTTTTTAAAA-ATATAAAATAAA
*
86845 TAAATATTATTTATAAATATAAAATAAA
1 TAAAT-TT-TTTAAAAATATAAAATAAA
86873 AATTATAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 5 0.21
27 6 0.25
28 13 0.54
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (26 bp):
TAAATTTTTTAAAAATATAAAATAAA
Found at i:88232 original size:10 final size:10
Alignment explanation
Indices: 88219--88264 Score: 83
Period size: 10 Copynumber: 4.5 Consensus size: 10
88209 TTTCGTTAAA
88219 TTTAATATAT
1 TTTAATATAT
88229 TTTAATATAT
1 TTTAATATAT
88239 TTTAATAATAT
1 TTTAAT-ATAT
88250 TTTAATATAT
1 TTTAATATAT
88260 TTTAA
1 TTTAA
88265 ATAATAATTC
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
10 25 0.71
11 10 0.29
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (10 bp):
TTTAATATAT
Found at i:88251 original size:21 final size:21
Alignment explanation
Indices: 88219--88270 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
88209 TTTCGTTAAA
88219 TTTAAT-ATATTTTAATATAT
1 TTTAATAATATTTTAATATAT
88239 TTTAATAATATTTTAATATAT
1 TTTAATAATATTTTAATATAT
88260 TTTAAATAATA
1 TTT-AATAATA
88271 ATTCAAGTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 6 0.20
21 17 0.57
22 7 0.23
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
TTTAATAATATTTTAATATAT
Found at i:89037 original size:2 final size:2
Alignment explanation
Indices: 89030--89063 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
89020 ACATACATAC
*
89030 AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
89064 TGCTTATGAC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:90643 original size:2 final size:2
Alignment explanation
Indices: 90602--90627 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
90592 AATTATTTAA
90602 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
90628 TTTAGCAGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:91224 original size:18 final size:18
Alignment explanation
Indices: 91184--91225 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
91174 ATCACATTCG
91184 TATTTAAAATTTTTAATA
1 TATTTAAAATTTTTAATA
* *
91202 AATTTAATAA-TTTTATTA
1 TATTTAA-AATTTTTAATA
91220 TATTTA
1 TATTTA
91226 CATTCGCATG
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 18 0.90
19 2 0.10
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
TATTTAAAATTTTTAATA
Found at i:93049 original size:18 final size:17
Alignment explanation
Indices: 93016--93049 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
93006 ATGACAAGAT
*
93016 AAAATGAACATGAAATC
1 AAAATGAACATAAAATC
93033 AAAATGAAACATAAAAT
1 AAAATG-AACATAAAAT
93050 TTAAATGCGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.65, C:0.09, G:0.09, T:0.18
Consensus pattern (17 bp):
AAAATGAACATAAAATC
Found at i:96133 original size:23 final size:24
Alignment explanation
Indices: 96099--96148 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
96089 TGTAATTAAA
*
96099 TAAAAATTTA-TTTATATTGAAAT
1 TAAAAATATATTTTATATTGAAAT
* *
96122 TAAAAATATATTTTATTTTTAAAT
1 TAAAAATATATTTTATATTGAAAT
96146 TAA
1 TAA
96149 TTAATTTCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 9 0.39
24 14 0.61
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (24 bp):
TAAAAATATATTTTATATTGAAAT
Found at i:96223 original size:24 final size:25
Alignment explanation
Indices: 96174--96235 Score: 67
Period size: 23 Copynumber: 2.6 Consensus size: 25
96164 CATATTAAAA
*
96174 AAATAA-AATAAATAAAAAATTATT
1 AAATAATATTAAATAAAAAATTATT
*
96198 -AATAATATTAAAT-AAAATTTATTT
1 AAATAATATTAAATAAAAAATTA-TT
*
96222 AAATGATATTAAAT
1 AAATAATATTAAAT
96236 TTATAAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
23 12 0.38
24 8 0.25
25 12 0.38
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (25 bp):
AAATAATATTAAATAAAAAATTATT
Found at i:97250 original size:21 final size:19
Alignment explanation
Indices: 97224--97263 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
97214 ATTTAAATTG
97224 ATTTAATCAACTTAAATTATT
1 ATTTAATCAA--TAAATTATT
*
97245 ATTTAATTAATAAATTATT
1 ATTTAATCAATAAATTATT
97264 TAAACTTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
21 9 0.50
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (19 bp):
ATTTAATCAATAAATTATT
Found at i:97289 original size:22 final size:22
Alignment explanation
Indices: 97247--97289 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
97237 AAATTATTAT
* *
97247 TTAATTAATAAATTATTTAAAC
1 TTAATTAATAAATCATATAAAC
97269 TTAATT-ATATAATCATATAAA
1 TTAATTAATA-AATCATATAAA
97290 TATTAACTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (22 bp):
TTAATTAATAAATCATATAAAC
Found at i:97734 original size:22 final size:23
Alignment explanation
Indices: 97691--97736 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
97681 GTTTAACTTC
* * *
97691 TTAAATATATAATATTTTAAATT
1 TTAAATATAGAATATCTCAAATT
97714 TTAAATAT-GAATATCTCAAATT
1 TTAAATATAGAATATCTCAAATT
97736 T
1 T
97737 GGATTTGAGT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (23 bp):
TTAAATATAGAATATCTCAAATT
Found at i:98037 original size:19 final size:18
Alignment explanation
Indices: 98010--98076 Score: 50
Period size: 19 Copynumber: 3.6 Consensus size: 18
98000 AATTATATTC
98010 AATATATTATATAAATTTT
1 AATA-ATTATATAAATTTT
*
98029 AATACATTA-ATTAATAATTT
1 AATA-ATTATA-TAA-ATTTT
98049 -AT-ATTATATAAATTTT
1 AATAATTATATAAATTTT
98065 AACATAATTATA
1 -A-ATAATTATA
98077 ATTTCGTTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 13
0.70 0.06 0.24
Matches are distributed among these distances:
16 4 0.11
17 7 0.18
18 2 0.05
19 15 0.39
20 10 0.26
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (18 bp):
AATAATTATATAAATTTT
Found at i:98053 original size:36 final size:32
Alignment explanation
Indices: 98012--98080 Score: 102
Period size: 36 Copynumber: 2.0 Consensus size: 32
98002 TTATATTCAA
98012 TATATTATATAAATTTTAATACATTAATTAATAATT
1 TATATTATATAAATTTT-A-ACA-TAATT-ATAATT
98048 TATATTATATAAATTTTAACATAATTATAATT
1 TATATTATATAAATTTTAACATAATTATAATT
98080 T
1 T
98081 CGTTTTGTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
32 7 0.21
33 5 0.15
34 3 0.09
35 1 0.03
36 17 0.52
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (32 bp):
TATATTATATAAATTTTAACATAATTATAATT
Found at i:98103 original size:15 final size:16
Alignment explanation
Indices: 98083--98117 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
98073 TATAATTTCG
98083 TTTTGTATTCTTTT-T
1 TTTTGTATTCTTTTAT
*
98098 TTTTGTATTGTTTTAT
1 TTTTGTATTCTTTTAT
98114 TTTT
1 TTTT
98118 ATATATTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 13 0.72
16 5 0.28
ACGTcount: A:0.09, C:0.03, G:0.09, T:0.80
Consensus pattern (16 bp):
TTTTGTATTCTTTTAT
Found at i:98153 original size:11 final size:11
Alignment explanation
Indices: 98111--98159 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
98101 TGTATTGTTT
98111 TATTTTTAT-A
1 TATTTTTATCA
* *
98121 TATTTTAATTA
1 TATTTTTATCA
*
98132 TTTTTTATATCA
1 TATTTT-TATCA
98144 TATTTTTATCA
1 TATTTTTATCA
98155 TATTT
1 TATTT
98160 AAAATTATTT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
10 8 0.25
11 16 0.50
12 8 0.25
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (11 bp):
TATTTTTATCA
Found at i:101285 original size:2 final size:2
Alignment explanation
Indices: 101278--101309 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
101268 AGATTCCAGC
*
101278 AT AT AT AT AT CT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
101310 TTTAAAAAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:101603 original size:22 final size:22
Alignment explanation
Indices: 101576--101626 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 22
101566 AAAAAAATTT
101576 TAATAAAT-TTAATTATAA-AAA
1 TAATAAATATTAA-TATAATAAA
101597 TATATAAATATTAATATAATAAA
1 TA-ATAAATATTAATATAATAAA
101620 TAATAAA
1 TAATAAA
101627 ACATGTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
21 2 0.07
22 16 0.59
23 9 0.33
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (22 bp):
TAATAAATATTAATATAATAAA
Found at i:107636 original size:21 final size:20
Alignment explanation
Indices: 107588--107663 Score: 64
Period size: 21 Copynumber: 3.7 Consensus size: 20
107578 TTTTGGTTAT
*
107588 AAAAATTATATTTTTT-ATCTA
1 AAAAA-TATATTTTTTCATC-C
107609 AAAAATATATTTTTTCATCC
1 AAAAATATATTTTTTCATCC
* ** *
107629 AAACAATACATCGTTTCATTC
1 AAA-AATATATTTTTTCATCC
*
107650 AAAAATATCTTTTT
1 AAAAATATATTTTT
107664 ATAAAAGATG
Statistics
Matches: 44, Mismatches: 9, Indels: 5
0.76 0.16 0.09
Matches are distributed among these distances:
20 20 0.45
21 24 0.55
ACGTcount: A:0.41, C:0.13, G:0.01, T:0.45
Consensus pattern (20 bp):
AAAAATATATTTTTTCATCC
Found at i:108015 original size:22 final size:22
Alignment explanation
Indices: 107959--108016 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 22
107949 TAATATTAAG
107959 AATAAATTAATAAATTTAATTAT
1 AATAAA-TAATAAATTTAATTAT
*
107982 AA-AAAAATATAAATATTAA-TAT
1 AATAAATA-ATAAAT-TTAATTAT
108004 AATAAATAATAAA
1 AATAAATAATAAA
108017 ACAAACTCTT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
21 1 0.03
22 19 0.63
23 10 0.33
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (22 bp):
AATAAATAATAAATTTAATTAT
Found at i:111303 original size:13 final size:14
Alignment explanation
Indices: 111280--111308 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
111270 AAAAAGTAAA
111280 AAAATTAAAATTTT
1 AAAATTAAAATTTT
111294 AAAA-TAAAATTTT
1 AAAATTAAAATTTT
111307 AA
1 AA
111309 TTTATTGATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
AAAATTAAAATTTT
Found at i:111394 original size:18 final size:19
Alignment explanation
Indices: 111353--111394 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
111343 TAATTAAATT
*
111353 AATTAAAATAATTTTGGTTT
1 AATTAAAATAATTTT-GTTA
*
111373 AATTAATATAATTTT-TTA
1 AATTAAAATAATTTTGTTA
111391 AATT
1 AATT
111395 TGATTCAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 6 0.30
20 14 0.70
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (19 bp):
AATTAAAATAATTTTGTTA
Done.