Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold246
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1425817
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.34
File 8 of 8
Found at i:1251786 original size:6 final size:6
Alignment explanation
Indices: 1251775--1251801 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
1251765 TAATCAAAAC
1251775 CAATTT CAATTT CAATTT CAATTT CAA
1 CAATTT CAATTT CAATTT CAATTT CAA
1251802 GCATTAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.37, C:0.19, G:0.00, T:0.44
Consensus pattern (6 bp):
CAATTT
Found at i:1252954 original size:21 final size:21
Alignment explanation
Indices: 1252929--1252979 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
1252919 TAAAAATTAA
*
1252929 TATTTAATAAAT-TTTAATTT
1 TATTTAATAAATCTATAATTT
*
1252949 TAATTTTA-AAATCTATAATTT
1 T-ATTTAATAAATCTATAATTT
1252970 T-TTTAATAAA
1 TATTTAATAAA
1252980 AAACTAATCT
Statistics
Matches: 25, Mismatches: 3, Indels: 6
0.74 0.09 0.18
Matches are distributed among these distances:
19 4 0.16
20 8 0.32
21 13 0.52
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (21 bp):
TATTTAATAAATCTATAATTT
Found at i:1253466 original size:18 final size:20
Alignment explanation
Indices: 1253438--1253485 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
1253428 AATCATATCA
* *
1253438 TAATCATTATTTTAA-TTTT
1 TAATAATTATTTTAACATTT
1253457 TAAT-ATTATTTTAACATTT
1 TAATAATTATTTTAACATTT
1253476 TAATAATTAT
1 TAATAATTAT
1253486 AATTGTATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 10 0.38
19 11 0.42
20 5 0.19
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (20 bp):
TAATAATTATTTTAACATTT
Found at i:1254468 original size:2 final size:2
Alignment explanation
Indices: 1254463--1254491 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
1254453 TGTGTGTGTG
1254463 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1254492 TGTAAAGTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1254709 original size:2 final size:2
Alignment explanation
Indices: 1254702--1254731 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
1254692 CAGACATGGA
1254702 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1254732 CAAGTCTGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:1255110 original size:1 final size:1
Alignment explanation
Indices: 1255104--1255128 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
1255094 CGAAACTCAA
1255104 CCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCC
1255129 TTTCAAATCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00
Consensus pattern (1 bp):
C
Found at i:1256272 original size:2 final size:2
Alignment explanation
Indices: 1256265--1256291 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1256255 ACCCTCGATG
1256265 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1256292 GTCGTGCCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1260685 original size:2 final size:2
Alignment explanation
Indices: 1260678--1260706 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
1260668 TAATATCTAT
1260678 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1260707 GAGATATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:1264313 original size:12 final size:12
Alignment explanation
Indices: 1264296--1264320 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1264286 TATCCATTCC
1264296 TTGAATCTATTT
1 TTGAATCTATTT
1264308 TTGAATCTATTT
1 TTGAATCTATTT
1264320 T
1 T
1264321 GTTACTCGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.08, T:0.60
Consensus pattern (12 bp):
TTGAATCTATTT
Found at i:1274810 original size:2 final size:2
Alignment explanation
Indices: 1274797--1274846 Score: 91
Period size: 2 Copynumber: 25.0 Consensus size: 2
1274787 AAAAGCACTC
*
1274797 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1274839 AT AT AT AT
1 AT AT AT AT
1274847 CAAAGAAAGC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1282973 original size:34 final size:33
Alignment explanation
Indices: 1282930--1283153 Score: 259
Period size: 34 Copynumber: 6.6 Consensus size: 33
1282920 CATTAAAATG
* *
1282930 TGTTGATTAAATGATGATTTGGTAGTTTACCTAT
1 TGTTGATTAAATGGTGATTTGGTAGCTTACC-AT
* * *
1282964 TGTTGATTAAATGGGTGATTTGGTGGTTTGCCAT
1 TGTTGATTAAAT-GGTGATTTGGTAGCTTACCAT
* * *
1282998 TGTTGACTAAATAGGAGATTTGATAGCTTACCAT
1 TGTTGATTAAAT-GGTGATTTGGTAGCTTACCAT
**
1283032 TGTTGATTAAATGAGAAATTTGGTAGCTTACCAT
1 TGTTGATTAAATG-GTGATTTGGTAGCTTACCAT
* *
1283066 TATTGATTAAATGGGTGATTTGGTGGCTTACCAT
1 TGTTGATTAAAT-GGTGATTTGGTAGCTTACCAT
* * *
1283100 TGTTGACTAAATGGTAGATTTGGTAGGTTGCCAT
1 TGTTGATTAAATGGT-GATTTGGTAGCTTACCAT
1283134 TGTTGATTAAATGGTGATTT
1 TGTTGATTAAATGGTGATTT
1283154 TTACCAAACC
Statistics
Matches: 163, Mismatches: 23, Indels: 9
0.84 0.12 0.05
Matches are distributed among these distances:
33 9 0.06
34 137 0.84
35 17 0.10
ACGTcount: A:0.26, C:0.08, G:0.25, T:0.42
Consensus pattern (33 bp):
TGTTGATTAAATGGTGATTTGGTAGCTTACCAT
Found at i:1283077 original size:102 final size:102
Alignment explanation
Indices: 1282930--1283153 Score: 328
Period size: 102 Copynumber: 2.2 Consensus size: 102
1282920 CATTAAAATG
* * * *
1282930 TGTTGATTAAATGATGATTTGGTAGTTTACCTATTGTTGATTAAATGGGTGATTTGGTGGTTTGC
1 TGTTGATTAAATGATGATTTGGTAGCTTACCTATTATTGATTAAATGGGTGATTTGGTGGCTTAC
1282995 CATTGTTGACTAAATAGG-AGATTTGATAGCTTACCAT
66 CATTGTTGACTAAAT-GGTAGATTTGATAGCTTACCAT
1283032 TGTTGATTAAATGA-GAAATTTGGTAGCTTACC-ATTATTGATTAAATGGGTGATTTGGTGGCTT
1 TGTTGATTAAATGATG--ATTTGGTAGCTTACCTATTATTGATTAAATGGGTGATTTGGTGGCTT
* * *
1283095 ACCATTGTTGACTAAATGGTAGATTTGGTAGGTTGCCAT
64 ACCATTGTTGACTAAATGGTAGATTTGATAGCTTACCAT
*
1283134 TGTTGATTAAATGGTGATTT
1 TGTTGATTAAATGATGATTT
1283154 TTACCAAACC
Statistics
Matches: 110, Mismatches: 8, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
101 7 0.06
102 88 0.80
103 15 0.14
ACGTcount: A:0.26, C:0.08, G:0.25, T:0.42
Consensus pattern (102 bp):
TGTTGATTAAATGATGATTTGGTAGCTTACCTATTATTGATTAAATGGGTGATTTGGTGGCTTAC
CATTGTTGACTAAATGGTAGATTTGATAGCTTACCAT
Found at i:1287612 original size:34 final size:34
Alignment explanation
Indices: 1287555--1287774 Score: 255
Period size: 34 Copynumber: 6.5 Consensus size: 34
1287545 AAGTGGGAGA
*
1287555 ATTGTTGATTAAAT-GGTGATTTGGTAGTTTACC
1 ATTGTTGATTAAATGGGTGATTTGGTAGCTTACC
* * * *
1287588 ATTGTTGACTAAATGGGTGATTTGGTGGTTTGCC
1 ATTGTTGATTAAATGGGTGATTTGGTAGCTTACC
* * *
1287622 ATTGTTGACTAAATAGGAGATTTGGTAGCTTACC
1 ATTGTTGATTAAATGGGTGATTTGGTAGCTTACC
* **
1287656 ATTGTTGATTAAATGAGAAATTTGGTAGCTTACC
1 ATTGTTGATTAAATGGGTGATTTGGTAGCTTACC
* * *
1287690 ATTATTAATTAAATGGGTGATTTGGTGGCTTACC
1 ATTGTTGATTAAATGGGTGATTTGGTAGCTTACC
* * *
1287724 ATTGTTGACTAAAT-GGTAGATTTGGTAGGTTGTCC
1 ATTGTTGATTAAATGGGT-GATTTGGTAGCTT-ACC
1287759 ATTGTTGATTAAATGG
1 ATTGTTGATTAAATGG
1287775 TGGTTTTTAC
Statistics
Matches: 158, Mismatches: 25, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
33 16 0.10
34 126 0.80
35 15 0.09
36 1 0.01
ACGTcount: A:0.26, C:0.08, G:0.25, T:0.40
Consensus pattern (34 bp):
ATTGTTGATTAAATGGGTGATTTGGTAGCTTACC
Found at i:1287703 original size:102 final size:102
Alignment explanation
Indices: 1287555--1287774 Score: 318
Period size: 102 Copynumber: 2.2 Consensus size: 102
1287545 AAGTGGGAGA
** * * * * *
1287555 ATTGTTGATTAAATGGTGATTTGGTAGTTTACCATTGTTGACTAAATGGGTGATTTGGTGGTTTG
1 ATTGTTGATTAAATGGAAATTTGGTAGCTTACCATTATTAACTAAATGGGTGATTTGGTGGCTTA
1287620 CCATTGTTGACTAAATAGG-AGATTTGGTAGCTT-ACC
66 CCATTGTTGACTAAAT-GGTAGATTTGGTAGCTTGACC
*
1287656 ATTGTTGATTAAATGAGAAATTTGGTAGCTTACCATTATTAATTAAATGGGTGATTTGGTGGCTT
1 ATTGTTGATTAAATG-GAAATTTGGTAGCTTACCATTATTAACTAAATGGGTGATTTGGTGGCTT
* *
1287721 ACCATTGTTGACTAAATGGTAGATTTGGTAGGTTGTCC
65 ACCATTGTTGACTAAATGGTAGATTTGGTAGCTTGACC
1287759 ATTGTTGATTAAATGG
1 ATTGTTGATTAAATGG
1287775 TGGTTTTTAC
Statistics
Matches: 106, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
101 17 0.16
102 72 0.68
103 17 0.16
ACGTcount: A:0.26, C:0.08, G:0.25, T:0.40
Consensus pattern (102 bp):
ATTGTTGATTAAATGGAAATTTGGTAGCTTACCATTATTAACTAAATGGGTGATTTGGTGGCTTA
CCATTGTTGACTAAATGGTAGATTTGGTAGCTTGACC
Found at i:1289494 original size:2 final size:2
Alignment explanation
Indices: 1289487--1289513 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1289477 CATGTTTCAA
1289487 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1289514 AGAGATTACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1294861 original size:13 final size:14
Alignment explanation
Indices: 1294845--1294877 Score: 59
Period size: 13 Copynumber: 2.4 Consensus size: 14
1294835 AAAAAAAAAA
1294845 AAATTTATAAG-TT
1 AAATTTATAAGTTT
1294858 AAATTTATAAGTTT
1 AAATTTATAAGTTT
1294872 AAATTT
1 AAATTT
1294878 TAAATTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.48
Consensus pattern (14 bp):
AAATTTATAAGTTT
Found at i:1297462 original size:18 final size:18
Alignment explanation
Indices: 1297439--1297480 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
1297429 TAATCGTTAA
1297439 TACTTGTTATAATGCTAT
1 TACTTGTTATAATGCTAT
*
1297457 TACTTGTTATACTGCTAT
1 TACTTGTTATAATGCTAT
*
1297475 TGCTTG
1 TACTTG
1297481 GCTACTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.21, C:0.14, G:0.14, T:0.50
Consensus pattern (18 bp):
TACTTGTTATAATGCTAT
Found at i:1303791 original size:4 final size:4
Alignment explanation
Indices: 1303784--1303821 Score: 67
Period size: 4 Copynumber: 9.2 Consensus size: 4
1303774 TTTTTTTTCC
1303784 TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TACTT T
1 TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT T-CTT T
1303822 GACTCAATCT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 29 0.88
5 4 0.12
ACGTcount: A:0.03, C:0.24, G:0.00, T:0.74
Consensus pattern (4 bp):
TCTT
Found at i:1306063 original size:2 final size:2
Alignment explanation
Indices: 1306058--1306090 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
1306048 TATCCTAGTA
1306058 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1306091 TACATTTCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:1308350 original size:2 final size:2
Alignment explanation
Indices: 1308343--1308369 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1308333 TTATTTAATA
1308343 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1308370 ATTACACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1308478 original size:3 final size:3
Alignment explanation
Indices: 1308470--1308510 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
1308460 TATTTACCAA
*
1308470 AAT AAT AAT AGT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1308511 AGGGCCTCTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:1309503 original size:2 final size:2
Alignment explanation
Indices: 1309496--1309530 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
1309486 CACCGCATCC
1309496 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1309531 AAAGAGAGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1316343 original size:7 final size:7
Alignment explanation
Indices: 1316325--1316355 Score: 53
Period size: 7 Copynumber: 4.3 Consensus size: 7
1316315 TTACCATCTT
1316325 ACAGGACC
1 ACAGG-CC
1316333 ACAGGCC
1 ACAGGCC
1316340 ACAGGCC
1 ACAGGCC
1316347 ACAGGCC
1 ACAGGCC
1316354 AC
1 AC
1316356 TCAAAGACCT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 18 0.78
8 5 0.22
ACGTcount: A:0.32, C:0.42, G:0.26, T:0.00
Consensus pattern (7 bp):
ACAGGCC
Found at i:1316510 original size:14 final size:14
Alignment explanation
Indices: 1316491--1316521 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
1316481 AGTAGCAAAG
1316491 GCAAGATAACAATA
1 GCAAGATAACAATA
1316505 GCAAGATAACAATA
1 GCAAGATAACAATA
1316519 GCA
1 GCA
1316522 GGAGTGATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.55, C:0.16, G:0.16, T:0.13
Consensus pattern (14 bp):
GCAAGATAACAATA
Found at i:1322892 original size:16 final size:18
Alignment explanation
Indices: 1322871--1322912 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
1322861 GAAAAACATA
1322871 TTTTTAA-AAAT-ATAAT
1 TTTTTAAGAAATAATAAT
*
1322887 TTTTTAAGAAATCAATAGT
1 TTTTTAAGAAAT-AATAAT
1322906 TTTTTAA
1 TTTTTAA
1322913 TTATATTCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 7 0.32
17 4 0.18
19 11 0.50
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (18 bp):
TTTTTAAGAAATAATAAT
Found at i:1325952 original size:14 final size:14
Alignment explanation
Indices: 1325933--1325987 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
1325923 ACTATTGAAC
1325933 ATAGGTATTTTGAT
1 ATAGGTATTTTGAT
1325947 ATAGGTA-TTT--T
1 ATAGGTATTTTGAT
*
1325958 -TA-GTATTTTTGAC
1 ATAGGTA-TTTTGAT
1325971 ATAGGTATTTTGAT
1 ATAGGTATTTTGAT
1325985 ATA
1 ATA
1325988 AATACTTTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
9 3 0.09
10 2 0.06
11 4 0.12
13 3 0.09
14 18 0.55
15 3 0.09
ACGTcount: A:0.29, C:0.02, G:0.18, T:0.51
Consensus pattern (14 bp):
ATAGGTATTTTGAT
Found at i:1326064 original size:14 final size:14
Alignment explanation
Indices: 1326022--1326140 Score: 58
Period size: 14 Copynumber: 8.3 Consensus size: 14
1326012 GCAAAAACAC
1326022 TTTGGCACAAATATT
1 TTTGGCACAAATA-T
* * *
1326037 TTTGGTATATATAT
1 TTTGGCACAAATAT
1326051 TTTGGCACAAATAT
1 TTTGGCACAAATAT
* * * *
1326065 TTTAGTAGAAGTAT
1 TTTGGCACAAATAT
* * **
1326079 TTTGGTAGAGGTACT
1 TTTGGCACAAATA-T
*
1326094 TTTAGCACAAATACT
1 TTTGGCACAAATA-T
* *
1326109 TTTAGCATAAATAT
1 TTTGGCACAAATAT
* * *
1326123 TTTGACATAAATAC
1 TTTGGCACAAATAT
1326137 TTTG
1 TTTG
1326141 ATATAAATAC
Statistics
Matches: 82, Mismatches: 21, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
14 49 0.60
15 33 0.40
ACGTcount: A:0.34, C:0.09, G:0.15, T:0.42
Consensus pattern (14 bp):
TTTGGCACAAATAT
Found at i:1326080 original size:28 final size:29
Alignment explanation
Indices: 1326022--1326083 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 29
1326012 GCAAAAACAC
* *
1326022 TTTGGCACAAATATTTTTGGTATATATAT
1 TTTGGCACAAATATTTTTAGTAGATATAT
1326051 TTTGGCACAAATA-TTTTAGTAGA-AGTAT
1 TTTGGCACAAATATTTTTAGTAGATA-TAT
1326079 TTTGG
1 TTTGG
1326084 TAGAGGTACT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
27 1 0.03
28 16 0.53
29 13 0.43
ACGTcount: A:0.31, C:0.06, G:0.18, T:0.45
Consensus pattern (29 bp):
TTTGGCACAAATATTTTTAGTAGATATAT
Found at i:1326108 original size:15 final size:15
Alignment explanation
Indices: 1326090--1326153 Score: 71
Period size: 14 Copynumber: 4.4 Consensus size: 15
1326080 TTGGTAGAGG
*
1326090 TACTTTTAGCACAAA
1 TACTTTTAGCATAAA
1326105 TACTTTTAGCATAAA
1 TACTTTTAGCATAAA
1326120 TA-TTTT-GACATAAA
1 TACTTTTAG-CATAAA
* *
1326134 TACTTTGA-TATAAA
1 TACTTTTAGCATAAA
1326148 TACTTT
1 TACTTT
1326154 GGCATAGGTA
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
13 1 0.02
14 23 0.53
15 19 0.44
ACGTcount: A:0.39, C:0.12, G:0.06, T:0.42
Consensus pattern (15 bp):
TACTTTTAGCATAAA
Found at i:1326141 original size:14 final size:14
Alignment explanation
Indices: 1326102--1326159 Score: 71
Period size: 14 Copynumber: 4.1 Consensus size: 14
1326092 CTTTTAGCAC
*
1326102 AAATACTTTTAGCAT
1 AAATACTTTGA-CAT
*
1326117 AAATATTTTGACAT
1 AAATACTTTGACAT
*
1326131 AAATACTTTGATAT
1 AAATACTTTGACAT
*
1326145 AAATACTTTGGCAT
1 AAATACTTTGACAT
1326159 A
1 A
1326160 GGTATTTTTT
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
14 28 0.76
15 9 0.24
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.40
Consensus pattern (14 bp):
AAATACTTTGACAT
Found at i:1326163 original size:72 final size:72
Alignment explanation
Indices: 1325976--1326168 Score: 172
Period size: 72 Copynumber: 2.7 Consensus size: 72
1325966 TTGACATAGG
* * *** * *
1325976 TATTTTGATATAAATACTTTTAATATAAGTACTCTGGCAAAAACAC-TTTGGCACAAATATTTTT
1 TATTTTGACATAAATAC-TTTAATATAAGTACTTTGGCAAAGGTACTTTTAGCACAAATACTTTT
* * *
1326040 GGTATATA
65 AGCATAAA
* * * * * * * *
1326048 TATTTTGGCACAAATATTTTAGTAGAAGTATTTTGGTAGAGGTACTTTTAGCACAAATACTTTTA
1 TATTTTGACATAAATACTTTAATATAAGTACTTTGGCAAAGGTACTTTTAGCACAAATACTTTTA
1326113 GCATAAA
66 GCATAAA
* * * *
1326120 TATTTTGACATAAATACTTTGATATAAATACTTTGGCATAGGTATTTTT
1 TATTTTGACATAAATACTTTAATATAAGTACTTTGGCAAAGGTACTTTT
1326169 TGTATAGGTA
Statistics
Matches: 91, Mismatches: 29, Indels: 2
0.75 0.24 0.02
Matches are distributed among these distances:
71 19 0.21
72 72 0.79
ACGTcount: A:0.35, C:0.10, G:0.13, T:0.41
Consensus pattern (72 bp):
TATTTTGACATAAATACTTTAATATAAGTACTTTGGCAAAGGTACTTTTAGCACAAATACTTTTA
GCATAAA
Found at i:1326932 original size:2 final size:2
Alignment explanation
Indices: 1326927--1326954 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
1326917 ACCACGTGTG
1326927 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1326955 GGATTTTCTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1327299 original size:2 final size:2
Alignment explanation
Indices: 1327292--1327320 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
1327282 GGTAATCGAT
1327292 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1327321 CGGAGATGTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:1329616 original size:19 final size:19
Alignment explanation
Indices: 1329579--1329617 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
1329569 GTTTTTTTTT
* *
1329579 TTAAATTTTTTTTAAAATA
1 TTAAATTATTTGTAAAATA
*
1329598 TTAAATTATTTGTATAATA
1 TTAAATTATTTGTAAAATA
1329617 T
1 T
1329618 AAGGTATATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (19 bp):
TTAAATTATTTGTAAAATA
Found at i:1331314 original size:2 final size:2
Alignment explanation
Indices: 1331307--1331336 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
1331297 ATCTCTAATT
1331307 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1331337 CTAAAAATCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:1335593 original size:2 final size:2
Alignment explanation
Indices: 1335586--1335612 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1335576 GAAGACGACT
1335586 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1335613 ATATATATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:1341612 original size:2 final size:2
Alignment explanation
Indices: 1341605--1341639 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
1341595 AAAGCTCTTT
* *
1341605 TA TA TA TA TA TA TA TA TA TA TA CA TA TG TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1341640 GTTGGCTTCT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:1341695 original size:6 final size:6
Alignment explanation
Indices: 1341684--1341708 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
1341674 GCATAGCAGT
1341684 AATTGC AATTGC AATTGC AATTGC A
1 AATTGC AATTGC AATTGC AATTGC A
1341709 TAGTTGAAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (6 bp):
AATTGC
Found at i:1342396 original size:3 final size:3
Alignment explanation
Indices: 1342390--1342420 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
1342380 ATCACAACAC
1342390 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1342421 ATTACAACCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:1342480 original size:9 final size:9
Alignment explanation
Indices: 1342466--1342490 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
1342456 CACAGTCATT
1342466 CCCTCCCTC
1 CCCTCCCTC
1342475 CCCTCCCTC
1 CCCTCCCTC
1342484 CCCTCCC
1 CCCTCCC
1342491 GCCCTGCTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.00, C:0.80, G:0.00, T:0.20
Consensus pattern (9 bp):
CCCTCCCTC
Found at i:1352514 original size:15 final size:15
Alignment explanation
Indices: 1352434--1352525 Score: 59
Period size: 14 Copynumber: 6.3 Consensus size: 15
1352424 AAATACTCTA
*
1352434 ACATAAATACTTTTG
1 ACATAAGTACTTTTG
** * *
1352449 ACGCATGTGCTTTTG
1 ACATAAGTACTTTTG
*
1352464 ATATAAGTA-TTTTG
1 ACATAAGTACTTTTG
*
1352478 ACATAAATA-TTTTAG
1 ACATAAGTACTTTT-G
1352493 A-A-AAGGTACTTTTG
1 ACATAA-GTACTTTTG
*
1352507 ACATAGGTAC-TTTG
1 ACATAAGTACTTTTG
1352521 ACATA
1 ACATA
1352526 TATATCTTTG
Statistics
Matches: 58, Mismatches: 14, Indels: 11
0.70 0.17 0.13
Matches are distributed among these distances:
13 2 0.03
14 30 0.52
15 25 0.43
16 1 0.02
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.39
Consensus pattern (15 bp):
ACATAAGTACTTTTG
Found at i:1353520 original size:15 final size:15
Alignment explanation
Indices: 1353497--1353526 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1353487 TAACGGGAGT
1353497 GGAAACACTTCTGTC
1 GGAAACACTTCTGTC
*
1353512 GGAATCACTTCTGTC
1 GGAAACACTTCTGTC
1353527 ACAAATGGCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (15 bp):
GGAAACACTTCTGTC
Found at i:1355927 original size:28 final size:28
Alignment explanation
Indices: 1355873--1355928 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
1355863 GCTTAAAGAA
* * * * *
1355873 TAACATGTTTCTCATGTTATATGCCAAG
1 TAACATGTTCCTCACGCTACATACCAAG
1355901 TAACATGTTCCTCACGCTACATACCAAG
1 TAACATGTTCCTCACGCTACATACCAAG
1355929 ACTTGTGTGT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.32
Consensus pattern (28 bp):
TAACATGTTCCTCACGCTACATACCAAG
Found at i:1356337 original size:16 final size:16
Alignment explanation
Indices: 1356316--1356356 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
1356306 ACGATAAAAA
*
1356316 AAATTATATATGTTTT
1 AAATTATATATCTTTT
1356332 AAATTA-ATAATCTTTT
1 AAATTATAT-ATCTTTT
1356348 AAA-TATATA
1 AAATTATATA
1356357 CATATTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
15 5 0.23
16 17 0.77
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (16 bp):
AAATTATATATCTTTT
Found at i:1356561 original size:14 final size:14
Alignment explanation
Indices: 1356542--1356583 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
1356532 TTATATCGCG
1356542 GATAATACCCTGCA
1 GATAATACCCTGCA
1356556 GATAATA-CCTCGCA
1 GATAATACCCT-GCA
* *
1356570 GGTAATACCTTGCA
1 GATAATACCCTGCA
1356584 AACAACACTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 3 0.12
14 19 0.79
15 2 0.08
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (14 bp):
GATAATACCCTGCA
Found at i:1356813 original size:4 final size:4
Alignment explanation
Indices: 1356804--1356837 Score: 59
Period size: 4 Copynumber: 8.5 Consensus size: 4
1356794 ATATTTCATT
*
1356804 TTTA TTTA TTTG TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
1356838 ATTATTATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:1359253 original size:2 final size:2
Alignment explanation
Indices: 1359246--1359282 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
1359236 TTAACCTAAC
1359246 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1359283 CCTAGTGTTC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1366691 original size:2 final size:2
Alignment explanation
Indices: 1366684--1366718 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
1366674 ACCGTACTTT
1366684 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1366719 TCTTCTAGTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1367776 original size:2 final size:2
Alignment explanation
Indices: 1367769--1367798 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
1367759 ACCCAATCTA
1367769 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1367799 GAACTCAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1369235 original size:3 final size:3
Alignment explanation
Indices: 1369227--1369253 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
1369217 CATATTGTTA
1369227 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1369254 ATTTTAGTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:1370978 original size:20 final size:21
Alignment explanation
Indices: 1370953--1371001 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
1370943 TAAGATTTAA
1370953 TAAAAAATTA-TTTTTTTAGT
1 TAAAAAATTACTTTTTTTAGT
1370973 TAAAAAATTACTTTTTTTAGT
1 TAAAAAATTACTTTTTTTAGT
*
1370994 TTAAAAAT
1 TAAAAAAT
1371002 ACTCATTTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
20 10 0.37
21 17 0.63
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (21 bp):
TAAAAAATTACTTTTTTTAGT
Found at i:1371197 original size:22 final size:23
Alignment explanation
Indices: 1371172--1371219 Score: 80
Period size: 22 Copynumber: 2.1 Consensus size: 23
1371162 ATAATAAAAA
*
1371172 TTAATTATTTTTAAAAT-AATTT
1 TTAATTATTATTAAAATAAATTT
1371194 TTAATTATTATTAAAATAAATTT
1 TTAATTATTATTAAAATAAATTT
1371217 TTA
1 TTA
1371220 TCAAATTATA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 16 0.67
23 8 0.33
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (23 bp):
TTAATTATTATTAAAATAAATTT
Found at i:1371364 original size:29 final size:31
Alignment explanation
Indices: 1371305--1371371 Score: 77
Period size: 30 Copynumber: 2.2 Consensus size: 31
1371295 AATAAATTTA
*
1371305 TAAAATATATTTAAAATTAATTAATTATTATT
1 TAAAA-ATATTTAAAATTAATAAATTATTATT
1371337 TAAAAAT-TTTAATAA-TAATAAATT-TTATT
1 TAAAAATATTTAA-AATTAATAAATTATTATT
*
1371366 AAAAAA
1 TAAAAA
1371372 GGAAGAGAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
29 10 0.31
30 13 0.41
31 4 0.12
32 5 0.16
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (31 bp):
TAAAAATATTTAAAATTAATAAATTATTATT
Found at i:1371680 original size:24 final size:25
Alignment explanation
Indices: 1371653--1371706 Score: 67
Period size: 23 Copynumber: 2.2 Consensus size: 25
1371643 TTCTCTCTAA
*
1371653 CTTTTTTTTTTTTAGATTT-ATTTT
1 CTTTTTGTTTTTTAGATTTGATTTT
**
1371677 C-TTTTGTTTTTTATTTTTGATTTT
1 CTTTTTGTTTTTTAGATTTGATTTT
1371701 CTTTTT
1 CTTTTT
1371707 ATTGATGTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
23 14 0.56
24 7 0.28
25 4 0.16
ACGTcount: A:0.09, C:0.06, G:0.06, T:0.80
Consensus pattern (25 bp):
CTTTTTGTTTTTTAGATTTGATTTT
Found at i:1371817 original size:28 final size:28
Alignment explanation
Indices: 1371744--1371852 Score: 107
Period size: 28 Copynumber: 3.9 Consensus size: 28
1371734 TTTTTTTGAT
* *
1371744 ATTTTTTATATGTTTTTAAAAGTTTTA-AG
1 ATTTTTTATAT-TTTTT-GAATTTTTATAG
*
1371773 ATATTTTTATAATTTTTGAATTTTTATAG
1 AT-TTTTTATATTTTTTGAATTTTTATAG
*
1371802 ATTTTTTATATTTTTTGAATTGTTAT--
1 ATTTTTTATATTTTTTGAATTTTTATAG
**
1371828 ATTTTTTCCATTTTATTGAATTTTT
1 ATTTTTTATATTTT-TTGAATTTTT
1371853 TTGAAAATTT
Statistics
Matches: 69, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
26 12 0.17
27 9 0.13
28 29 0.42
29 11 0.16
30 8 0.12
ACGTcount: A:0.27, C:0.02, G:0.07, T:0.64
Consensus pattern (28 bp):
ATTTTTTATATTTTTTGAATTTTTATAG
Found at i:1378133 original size:38 final size:38
Alignment explanation
Indices: 1378084--1378230 Score: 206
Period size: 38 Copynumber: 3.9 Consensus size: 38
1378074 AAATTGAATT
* * *
1378084 GGCTAACGGTTAGAGAATTCAATTTGAAATTGACTGAC
1 GGCTGACGATTAGAGAATTCAATTTGAAATTGGCTGAC
* *
1378122 GGCTGACGGTTAGAGAATTCAATTTGGAATTGGCT-AGC
1 GGCTGACGATTAGAGAATTCAATTTGAAATTGGCTGA-C
*
1378160 GGCTGACGATTAGAGAATTCAATTTGAAATTGGCTGGC
1 GGCTGACGATTAGAGAATTCAATTTGAAATTGGCTGAC
* *
1378198 GGCTGACGATTAGAGTATTCAATTTGGAATTGG
1 GGCTGACGATTAGAGAATTCAATTTGAAATTGG
1378231 ATGGTGGCTA
Statistics
Matches: 99, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
37 1 0.01
38 98 0.99
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.30
Consensus pattern (38 bp):
GGCTGACGATTAGAGAATTCAATTTGAAATTGGCTGAC
Found at i:1378219 original size:76 final size:76
Alignment explanation
Indices: 1378084--1378230 Score: 240
Period size: 76 Copynumber: 1.9 Consensus size: 76
1378074 AAATTGAATT
* *
1378084 GGCTAACGGTTAGAGAATTCAATTTGAAATTGACTGACGGCTGACGGTTAGAGAATTCAATTTGG
1 GGCTAACGATTAGAGAATTCAATTTGAAATTGACTGACGGCTGACGATTAGAGAATTCAATTTGG
1378149 AATTGGCTAGC
66 AATTGGCTAGC
* * * *
1378160 GGCTGACGATTAGAGAATTCAATTTGAAATTGGCTGGCGGCTGACGATTAGAGTATTCAATTTGG
1 GGCTAACGATTAGAGAATTCAATTTGAAATTGACTGACGGCTGACGATTAGAGAATTCAATTTGG
1378225 AATTGG
66 AATTGG
1378231 ATGGTGGCTA
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
76 65 1.00
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.30
Consensus pattern (76 bp):
GGCTAACGATTAGAGAATTCAATTTGAAATTGACTGACGGCTGACGATTAGAGAATTCAATTTGG
AATTGGCTAGC
Found at i:1381491 original size:247 final size:247
Alignment explanation
Indices: 1380960--1381697 Score: 1131
Period size: 247 Copynumber: 3.0 Consensus size: 247
1380950 TACTTTCATC
*
1380960 AAAAGTGCTAAGGATAATCTTGCAGCTAGG-CCATATGACCTAAAAAATGCCTAATTAGCGAAGC
1 AAAAGTGCTAAGGATAATCTTGCA-CTAGGCCCATATGACCTAAAAAATACCTAATTAGCGAAGC
* * *
1381024 CCAACCTCATTAACTAATGGATTTAATAGATTGTTGGGCCACATAGAGCTAAACTCATGGCTTG-
65 CCAATCTCATTAACTAATGGACTTAATAGATTGTTGGGCCACATAGAGCTAGACTCATGGCTTGA
* * * *
1381088 ATAAGAAGGCTTATCATCAAGGAGTTTGTTGGAATACACTAAATGATACTATATGGTACAATCAC
130 ATAAGAAGGCTTATCATCAAGGAGTTTGTTGGAATACACTAGATAATACTATGTGGCACAATCAC
* * * *
1381153 AATCATCTATTATTATATGTATACTTGAATTATTCATTCTTAACTCAAGCATG
195 AATCATCTATTATTGTATGTATACTAGAATTATTCATTCTTAACCCAAGCATA
* * *
1381206 AAAAGTGCTAAGGATAATCTTGCACTAAGCCTATATGACCTAAAAAATACCTAATTAGCAAAGCC
1 AAAAGTGCTAAGGATAATCTTGCACTAGGCCCATATGACCTAAAAAATACCTAATTAGCGAAGCC
* *
1381271 CAATCTCATTAACTAATGGACTTAATAGATTGTTGGGCCACATAAAGCCAGACTCATGGCTTGAA
66 CAATCTCATTAACTAATGGACTTAATAGATTGTTGGGCCACATAGAGCTAGACTCATGGCTTGAA
*
1381336 TAAGAAGGCTTATCATTAAGGAGTTTGTTGGAATACACTAGATAATACTATGTGGCACAATCACA
131 TAAGAAGGCTTATCATCAAGGAGTTTGTTGGAATACACTAGATAATACTATGTGGCACAATCACA
* *
1381401 ATCATCTATTATTGTATCTATACTAGAATTATTCATTCTTAACCCAGGCATA
196 ATCATCTATTATTGTATGTATACTAGAATTATTCATTCTTAACCCAAGCATA
* * * * * * *
1381453 AAAAATGCTAAAGATAATCTGGCACTAGGCCCATATGACCTAAAAAATTCCCAATCAACGAAGCC
1 AAAAGTGCTAAGGATAATCTTGCACTAGGCCCATATGACCTAAAAAATACCTAATTAGCGAAGCC
* * **
1381518 CAATCTCATTAACTAATGGACTTAATAGATTGTTGAGCCACGTAGAGCTAGACTCAAAGCTTGAA
66 CAATCTCATTAACTAATGGACTTAATAGATTGTTGGGCCACATAGAGCTAGACTCATGGCTTGAA
* *
1381583 TAA-AAGGGCTTATCATCGAGGAGTTTGTTGAAATACACTAGATAATACTATGTGGCACAATCAC
131 TAAGAA-GGCTTATCATCAAGGAGTTTGTTGGAATACACTAGATAATACTATGTGGCACAATCAC
*
1381647 AATCATCTATTATTGTATGTATACTAGAATTATTCATTCCTAACCCAAGCA
195 AATCATCTATTATTGTATGTATACTAGAATTATTCATTCTTAACCCAAGCA
1381698 GAACCATAAT
Statistics
Matches: 447, Mismatches: 42, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
245 4 0.01
246 116 0.26
247 327 0.73
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (247 bp):
AAAAGTGCTAAGGATAATCTTGCACTAGGCCCATATGACCTAAAAAATACCTAATTAGCGAAGCC
CAATCTCATTAACTAATGGACTTAATAGATTGTTGGGCCACATAGAGCTAGACTCATGGCTTGAA
TAAGAAGGCTTATCATCAAGGAGTTTGTTGGAATACACTAGATAATACTATGTGGCACAATCACA
ATCATCTATTATTGTATGTATACTAGAATTATTCATTCTTAACCCAAGCATA
Found at i:1383496 original size:41 final size:41
Alignment explanation
Indices: 1383408--1383500 Score: 109
Period size: 41 Copynumber: 2.3 Consensus size: 41
1383398 CTACTTTGTG
* * *
1383408 ATCTTTTCTATTTTAGTTTCCATGCGTAATGTGTAGAGGTA
1 ATCTTTTCTATTTTAGTCTCCATGCGAAATGAGTAGAGGTA
* * *
1383449 AT-TTTTCCTATTTTTGTCTCCATGGGAAATGAGTGGAGG-A
1 ATCTTTT-CTATTTTAGTCTCCATGCGAAATGAGTAGAGGTA
1383489 ATCTTTTCTATT
1 ATCTTTTCTATT
1383501 ATATTTTTGC
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
40 12 0.27
41 32 0.73
ACGTcount: A:0.22, C:0.13, G:0.19, T:0.46
Consensus pattern (41 bp):
ATCTTTTCTATTTTAGTCTCCATGCGAAATGAGTAGAGGTA
Found at i:1384664 original size:16 final size:18
Alignment explanation
Indices: 1384633--1384669 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
1384623 ATAATAATTT
*
1384633 TATTTGTTTAAATTTA-A
1 TATTTGGTTAAATTTATA
1384650 TATTTGGTT-AATTTATA
1 TATTTGGTTAAATTTATA
1384667 TAT
1 TAT
1384670 ATATATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 6 0.33
17 12 0.67
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.59
Consensus pattern (18 bp):
TATTTGGTTAAATTTATA
Found at i:1384670 original size:2 final size:2
Alignment explanation
Indices: 1384663--1384692 Score: 51
Period size: 2 Copynumber: 14.5 Consensus size: 2
1384653 TTGGTTAATT
1384663 TA TA TA TA TA TA TA TA TA TA TA TA TGA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T-A TA T
1384693 TAGTACTTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 25 0.93
3 2 0.07
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1385662 original size:15 final size:15
Alignment explanation
Indices: 1385630--1385673 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 15
1385620 AAGTTTTTAA
1385630 AATTAAATTATT-TT
1 AATTAAATTATTATT
1385644 --TTAAATTATTATT
1 AATTAAATTATTATT
1385657 AATT-AATTCATTATT
1 AATTAAATT-ATTATT
1385672 AA
1 AA
1385674 CATAAAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
12 10 0.38
13 2 0.08
14 4 0.15
15 10 0.38
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (15 bp):
AATTAAATTATTATT
Found at i:1391343 original size:28 final size:28
Alignment explanation
Indices: 1391303--1391356 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
1391293 ATTACGATAT
*
1391303 AGGTATAAGGATATAACCCTTTAAAGGC
1 AGGTATAAGGATATAACCCTCTAAAGGC
* *
1391331 AGGTATGAGGATATGACCCTCTAAAG
1 AGGTATAAGGATATAACCCTCTAAAG
1391357 ACCCTCCAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (28 bp):
AGGTATAAGGATATAACCCTCTAAAGGC
Found at i:1393769 original size:6 final size:6
Alignment explanation
Indices: 1393753--1393795 Score: 70
Period size: 6 Copynumber: 7.3 Consensus size: 6
1393743 TGAGTGCTTG
*
1393753 GTTTG- GTTTGT GTTTGT GTTTGT GTTTGT GTTTGA GTTTGT GT
1 GTTTGT GTTTGT GTTTGT GTTTGT GTTTGT GTTTGT GTTTGT GT
1393796 AGATCTTTTC
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
5 5 0.14
6 30 0.86
ACGTcount: A:0.02, C:0.00, G:0.35, T:0.63
Consensus pattern (6 bp):
GTTTGT
Found at i:1394738 original size:16 final size:16
Alignment explanation
Indices: 1394717--1394747 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1394707 GGTTTTTCTA
*
1394717 ATAAAAATATTATTAT
1 ATAAAAATATAATTAT
1394733 ATAAAAATATAATTA
1 ATAAAAATATAATTA
1394748 CTTTTATTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
ATAAAAATATAATTAT
Found at i:1395154 original size:8 final size:8
Alignment explanation
Indices: 1395135--1395223 Score: 65
Period size: 8 Copynumber: 10.8 Consensus size: 8
1395125 TATATTAAAA
1395135 ATATTT-T
1 ATATTTAT
1395142 ATATTTAT
1 ATATTTAT
1395150 ATATTTAT
1 ATATTTAT
*
1395158 ATATTAAT
1 ATATTTAT
1395166 A-ATTTAT
1 ATATTTAT
* *
1395173 ATTATATAA
1 A-TATTTAT
* *
1395182 ATTTTTAAA
1 ATATTT-AT
*
1395191 ATATTCAT
1 ATATTTAT
1395199 ATATTTTATT
1 ATA-TTTA-T
1395209 ATATTTAT
1 ATATTTAT
1395217 ATTATTT
1 A-TATTT
1395224 TTTATATAAT
Statistics
Matches: 65, Mismatches: 10, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
7 12 0.18
8 26 0.40
9 23 0.35
10 4 0.06
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (8 bp):
ATATTTAT
Found at i:1395155 original size:15 final size:15
Alignment explanation
Indices: 1395135--1395186 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
1395125 TATATTAAAA
1395135 ATATTTTATATTTAT
1 ATATTTTATATTTAT
1395150 ATA-TTTATATATTA-
1 ATATTTTATAT-TTAT
*
1395164 ATAATTTATATTATAT
1 ATATTTTATATT-TAT
*
1395180 AAATTTT
1 ATATTTT
1395187 TAAAATATTC
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
14 11 0.35
15 15 0.48
16 5 0.16
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
ATATTTTATATTTAT
Found at i:1395204 original size:49 final size:52
Alignment explanation
Indices: 1395142--1395238 Score: 123
Period size: 51 Copynumber: 1.9 Consensus size: 52
1395132 AAAATATTTT
*
1395142 ATATTTATATA-TTTA-TATA-TTA-ATAATTTATATTATATAA-ATTTTTAAA
1 ATATTCATATATTTTATTATATTTATATAATTT-T-TTATATAATATTTTTAAA
*
1395191 ATATTCATATATTTTATTATATTTATATTATTTTTTATATAATATTTT
1 ATATTCATATATTTTATTATATTTATATAATTTTTTATATAATATTTT
1395239 AATTATTTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
49 10 0.24
50 4 0.10
51 12 0.29
52 9 0.22
53 6 0.15
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (52 bp):
ATATTCATATATTTTATTATATTTATATAATTTTTTATATAATATTTTTAAA
Found at i:1395212 original size:18 final size:18
Alignment explanation
Indices: 1395140--1395250 Score: 71
Period size: 18 Copynumber: 6.6 Consensus size: 18
1395130 TAAAAATATT
1395140 TTATATTTATATA-TTTA
1 TTATATTTATATATTTTA
*
1395157 -TATATTAATA-ATTTATA
1 TTATATTTATATATTT-TA
*
1395174 TTATA--TAAAT-TTTTA
1 TTATATTTATATATTTTA
** *
1395189 AAATATTCATATATTTTA
1 TTATATTTATATATTTTA
1395207 TTATATTTATATTATTTT-
1 TTATATTTATA-TATTTTA
1395225 TTATA--TA-ATATTTTAA
1 TTATATTTATATATTTT-A
*
1395241 TTATTTTTAT
1 TTATATTTAT
1395251 CACAATCATG
Statistics
Matches: 70, Mismatches: 11, Indels: 24
0.67 0.10 0.23
Matches are distributed among these distances:
14 6 0.09
15 7 0.10
16 22 0.31
17 5 0.07
18 24 0.34
19 6 0.09
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61
Consensus pattern (18 bp):
TTATATTTATATATTTTA
Found at i:1396043 original size:9 final size:10
Alignment explanation
Indices: 1396025--1396053 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
1396015 GTATCAAACT
1396025 TTTTTCTTTC
1 TTTTTCTTTC
1396035 TTTTT-TTTC
1 TTTTTCTTTC
1396044 TTTTTCTTTC
1 TTTTTCTTTC
1396054 ATTCTTGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (10 bp):
TTTTTCTTTC
Found at i:1401068 original size:21 final size:21
Alignment explanation
Indices: 1401044--1401751 Score: 109
Period size: 21 Copynumber: 34.1 Consensus size: 21
1401034 TATAACTCCT
1401044 AACTTTAAACCTTAAACCCTA
1 AACTTTAAACCTTAAACCCTA
* * * *
1401065 AACTATAAAACCCTAATCCTTA
1 AACT-TTAAACCTTAAACCCTA
* * * **
1401087 ATCTTTAATCCCTAAACTTTA
1 AACTTTAAACCTTAAACCCTA
* * *
1401108 AATTTTAAACTTTAAACCCCA
1 AACTTTAAACCTTAAACCCTA
*
1401129 AACTTTAAAATCC-TAAATGCC-A
1 AACTTT-AAA-CCTTAAA-CCCTA
** * *
1401151 AACCCCTGAACCTTGAA-CCT-
1 AA-CTTTAAACCTTAAACCCTA
* *
1401171 AACTTTTAACGTTAAACCCT-
1 AACTTTAAACCTTAAACCCTA
** *
1401191 AAC-CCAAACCTCAAA-CCTA
1 AACTTTAAACCTTAAACCCTA
*
1401210 AAC-TTAAACCTTAAA-CCTT
1 AACTTTAAACCTTAAACCCTA
* * *
1401229 AACCTTAAACTTTAAAACCTAA
1 AACTTTAAACCTTAAACCCT-A
** * *
1401251 AACCCTAAACTTTAAACTC-A
1 AACTTTAAACCTTAAACCCTA
* * * *
1401271 AAATCCTAAACCTCAAACTCTA
1 AACT-TTAAACCTTAAACCCTA
* * *
1401293 AACTTTAAAAGCTTAAA-TCTT
1 AACTTT-AAACCTTAAACCCTA
*
1401314 AACCTTAAACC-TAAA-CCTA
1 AACTTTAAACCTTAAACCCTA
* * **
1401333 AACCTTAAACTTTAAACTTTA
1 AACTTTAAACCTTAAACCCTA
* * * **
1401354 ACCTCTTAACCCCTAAATCTTTA
1 AACT-TTAAACCTTAAA-CCCTA
* **
1401377 GACTTTAAATTTTAAA-CCTA
1 AACTTTAAACCTTAAACCCTA
* ** * *
1401397 AAATGCGAAACCTTAAATCTTA
1 AACT-TTAAACCTTAAACCCTA
* *
1401419 AACTTTAAACCCTAAA-CCTT
1 AACTTTAAACCTTAAACCCTA
* *
1401439 AACCTTAAA-CTTGAAA-CTTAA
1 AACTTTAAACCTT-AAACCCT-A
* * *
1401460 AACCTTAAACTTTAAA-CTTCA
1 AACTTTAAACCTTAAACCCT-A
* * * *
1401481 AACCTTAAACCTGAAATCTTA
1 AACTTTAAACCTTAAACCCTA
* * *
1401502 AA-TCCTAACCCTT-AACCCTTT
1 AACT-TTAAACCTTAAACCC-TA
* *
1401523 AACTTTAAACATT-AACCTTA
1 AACTTTAAACCTTAAACCCTA
1401543 AA-TTCTAAACCTTAAA-CCTCA
1 AACTT-TAAACCTTAAACCCT-A
*
1401564 AACTTAAAACCTT-----C--
1 AACTTTAAACCTTAAACCCTA
* *
1401578 AACTTAAAACCTAAAACCCTA
1 AACTTTAAACCTTAAACCCTA
* * *
1401599 AA-TCTCAACCCTTAAACCTTA
1 AACT-TTAAACCTTAAACCCTA
* * * *
1401620 AACCTTAGACCCTAAACA-TCA
1 AACTTTAAACCTTAAACCCT-A
1401641 AACTTTTAAACC-TAAATCCCTA
1 AAC-TTTAAACCTTAAA-CCCTA
* *
1401663 ACCTTT-AATCTCTAAACCCCTA
1 AACTTTAAACCT-TAAA-CCCTA
* *
1401685 AACCCTTAAACTTTAAA-CCTA
1 AA-CTTTAAACCTTAAACCCTA
* * * *
1401706 AACCCTTAATCCCTAAACCTTA
1 AA-CTTTAAACCTTAAACCCTA
* * *
1401728 ACCTTTAAATCTTAAACCTTA
1 AACTTTAAACCTTAAACCCTA
1401749 AAC
1 AAC
1401752 CAAAGCTCGA
Statistics
Matches: 498, Mismatches: 139, Indels: 100
0.68 0.19 0.14
Matches are distributed among these distances:
14 12 0.02
17 1 0.00
18 3 0.01
19 55 0.11
20 71 0.14
21 219 0.44
22 114 0.23
23 20 0.04
24 3 0.01
ACGTcount: A:0.42, C:0.28, G:0.02, T:0.29
Consensus pattern (21 bp):
AACTTTAAACCTTAAACCCTA
Found at i:1401120 original size:28 final size:28
Alignment explanation
Indices: 1401084--1401137 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
1401074 ACCCTAATCC
* * *
1401084 TTAATCTTTAATCCCTAAACTTTAAATT
1 TTAAACTTTAAACCCCAAACTTTAAATT
1401112 TTAAACTTTAAACCCCAAACTTTAAA
1 TTAAACTTTAAACCCCAAACTTTAAA
1401138 ATCCTAAATG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.41, C:0.20, G:0.00, T:0.39
Consensus pattern (28 bp):
TTAAACTTTAAACCCCAAACTTTAAATT
Found at i:1401228 original size:7 final size:7
Alignment explanation
Indices: 1401196--1401752 Score: 260
Period size: 7 Copynumber: 79.7 Consensus size: 7
1401186 ACCCTAACCC
*
1401196 AAACCTC
1 AAACCTT
1401203 AAACC-T
1 AAACCTT
1401209 AAA-CTT
1 AAACCTT
1401215 AAACCTT
1 AAACCTT
1401222 AAACCTT
1 AAACCTT
1401229 -AACCTT
1 AAACCTT
*
1401235 AAACTTT
1 AAACCTT
*
1401242 AAAACCTA
1 -AAACCTT
*
1401250 AAACCCT
1 AAACCTT
*
1401257 AAACTTT
1 AAACCTT
*
1401264 AAA-CTCA
1 AAACCT-T
1401271 AAATCC-T
1 AAA-CCTT
*
1401278 AAACCTC
1 AAACCTT
1401285 AAA-CTCT
1 AAACCT-T
*
1401292 AAACTTT
1 AAACCTT
*
1401299 AAAAGCTT
1 -AAACCTT
*
1401307 AAATCTT
1 AAACCTT
1401314 -AACCTT
1 AAACCTT
1401320 AAACC-T
1 AAACCTT
1401326 AAACC-T
1 AAACCTT
1401332 AAACCTT
1 AAACCTT
*
1401339 AAACTTT
1 AAACCTT
*
1401346 AAACTTT
1 AAACCTT
*
1401353 AACCTCTT
1 AAAC-CTT
* *
1401361 AACCCCT
1 AAACCTT
*
1401368 AAATCTTT
1 AAA-CCTT
* *
1401376 AGACTTT
1 AAACCTT
**
1401383 AAATTTT
1 AAACCTT
*
1401390 AAACCTA
1 AAACCTT
* *
1401397 AAATGC-G
1 AAA-CCTT
1401404 AAACCTT
1 AAACCTT
*
1401411 AAATCTT
1 AAACCTT
*
1401418 AAACTTT
1 AAACCTT
*
1401425 AAACCCT
1 AAACCTT
1401432 AAACCTT
1 AAACCTT
1401439 -AACCTT
1 AAACCTT
1401445 AAA-CTT
1 AAACCTT
1401451 GAAA-CTT
1 -AAACCTT
1401458 AAAACCTT
1 -AAACCTT
*
1401466 AAACTTT
1 AAACCTT
1401473 AAA-CTT
1 AAACCTT
1401479 CAAACCTT
1 -AAACCTT
*
1401487 AAACCTG
1 AAACCTT
*
1401494 AAATCTT
1 AAACCTT
1401501 AAATCC-T
1 AAA-CCTT
*
1401508 AACCCTT
1 AAACCTT
*
1401515 AACCCTT
1 AAACCTT
* *
1401522 TAACTTT
1 AAACCTT
*
1401529 AAACATT
1 AAACCTT
1401536 -AACCTT
1 AAACCTT
*
1401542 AAA-TTCT
1 AAACCT-T
1401549 AAACCTT
1 AAACCTT
*
1401556 AAACCTC
1 AAACCTT
1401563 AAA-CTT
1 AAACCTT
1401569 AAAACCTT
1 -AAACCTT
*
1401577 CAA-CTT
1 AAACCTT
*
1401583 AAAACCTA
1 -AAACCTT
*
1401591 AAACCCT
1 AAACCTT
* *
1401598 AAATCTC
1 AAACCTT
*
1401605 AACCCTT
1 AAACCTT
1401612 AAACCTT
1 AAACCTT
1401619 AAACCTT
1 AAACCTT
* *
1401626 AGACCCT
1 AAACCTT
* *
1401633 AAACATC
1 AAACCTT
*
1401640 AAACTTTT
1 AAAC-CTT
1401648 AAACC-T
1 AAACCTT
*
1401654 AAATCCCT
1 AAA-CCTT
1401662 -AACCTT
1 AAACCTT
* *
1401668 TAATCTCT
1 AAACCT-T
*
1401676 AAACCCCT
1 AAA-CCTT
1401684 AAACCCTT
1 AAA-CCTT
*
1401692 AAACTTT
1 AAACCTT
1401699 AAACC-T
1 AAACCTT
1401705 AAACCCTT
1 AAA-CCTT
* *
1401713 AATCCCT
1 AAACCTT
1401720 AAACCTT
1 AAACCTT
1401727 -AACCTTT
1 AAACC-TT
*
1401734 AAATCTT
1 AAACCTT
1401741 AAACCTT
1 AAACCTT
1401748 AAACC
1 AAACC
1401753 AAAGCTCGAA
Statistics
Matches: 415, Mismatches: 94, Indels: 82
0.70 0.16 0.14
Matches are distributed among these distances:
5 1 0.00
6 75 0.18
7 276 0.67
8 61 0.15
9 2 0.00
ACGTcount: A:0.42, C:0.27, G:0.01, T:0.29
Consensus pattern (7 bp):
AAACCTT
Found at i:1401736 original size:29 final size:29
Alignment explanation
Indices: 1401645--1401736 Score: 75
Period size: 29 Copynumber: 3.2 Consensus size: 29
1401635 ACATCAAACT
* *
1401645 TTTAAA-CCTAAATCCCT-AACCTTTAATC
1 TTTAAACCCTTAATCCCTAAACC-TTAACC
* * * *
1401673 TCTAAACCCCTAAACCCTTAAACTTTAAACC
1 TTTAAACCCTTAATCCC-TAAACCTT-AACC
1401704 --TAAACCCTTAATCCCTAAACCTTAACC
1 TTTAAACCCTTAATCCCTAAACCTTAACC
1401731 TTTAAA
1 TTTAAA
1401737 TCTTAAACCT
Statistics
Matches: 49, Mismatches: 9, Indels: 11
0.71 0.13 0.16
Matches are distributed among these distances:
27 4 0.08
28 12 0.24
29 24 0.49
30 3 0.06
31 6 0.12
ACGTcount: A:0.38, C:0.32, G:0.00, T:0.30
Consensus pattern (29 bp):
TTTAAACCCTTAATCCCTAAACCTTAACC
Found at i:1415248 original size:20 final size:20
Alignment explanation
Indices: 1415220--1415271 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
1415210 GACAAATGAC
*
1415220 AAGCTTGAAAAAACAAT-GA
1 AAGCCTGAAAAAACAATGGA
*
1415239 AGAGCCTGAAAAAGCAATGGA
1 A-AGCCTGAAAAAACAATGGA
1415260 AAGCCT-AAAAAA
1 AAGCCTGAAAAAA
1415272 ATAAATACCA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
19 6 0.21
20 19 0.68
21 3 0.11
ACGTcount: A:0.56, C:0.13, G:0.19, T:0.12
Consensus pattern (20 bp):
AAGCCTGAAAAAACAATGGA
Found at i:1415680 original size:20 final size:20
Alignment explanation
Indices: 1415652--1415696 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
1415642 AAGGTGCTCG
1415652 AAAAA-GTAATAGAAAGCTT
1 AAAAAGGTAATAGAAAGCTT
1415671 AAAAAGGTAATAGAAAGCTT
1 AAAAAGGTAATAGAAAGCTT
1415691 AAAAAG
1 AAAAAG
1415697 CCAAGATGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.60, C:0.04, G:0.18, T:0.18
Consensus pattern (20 bp):
AAAAAGGTAATAGAAAGCTT
Found at i:1415713 original size:57 final size:57
Alignment explanation
Indices: 1415609--1415734 Score: 130
Period size: 57 Copynumber: 2.2 Consensus size: 57
1415599 GGCTTTGGCG
* * *
1415609 AGCTTAAAAAGGAAATAAAGAACCTAAAAAGACAAGGTGCTCGAAAAAGTAATAGAA
1 AGCTTAAAAAGGAAATAAAGAACCTAAAAAGACAAGATGCTCAAAAAAGCAATAGAA
* * * * * *
1415666 AGCTTAAAAAGGTAATAGAA-AGCTTAAAAAGCCAAGATGC-CTAAAAAAGCAATTGAG
1 AGCTTAAAAAGGAAATA-AAGAACCTAAAAAGACAAGATGCTC-AAAAAAGCAATAGAA
*
1415723 AGTTTAAAAAGG
1 AGCTTAAAAAGG
1415735 CTATAGCGAA
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
56 1 0.02
57 54 0.95
58 2 0.04
ACGTcount: A:0.53, C:0.10, G:0.20, T:0.17
Consensus pattern (57 bp):
AGCTTAAAAAGGAAATAAAGAACCTAAAAAGACAAGATGCTCAAAAAAGCAATAGAA
Found at i:1415766 original size:20 final size:20
Alignment explanation
Indices: 1415743--1415791 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
1415733 GGCTATAGCG
* *
1415743 AACCTAAAATGGCTATGGTA
1 AACCTAAAATGGCAATGGAA
*
1415763 AACCTAAAGTGGCAATGGAA
1 AACCTAAAATGGCAATGGAA
*
1415783 AAACTAAAA
1 AACCTAAAA
1415792 AGACTAAATA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.18
Consensus pattern (20 bp):
AACCTAAAATGGCAATGGAA
Found at i:1417340 original size:21 final size:21
Alignment explanation
Indices: 1417316--1417358 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
1417306 TAAAATTTAT
1417316 AAACCCAAAATTAAACCCTAA
1 AAACCCAAAATTAAACCCTAA
* * *
1417337 AAACCCTAATTTAAACCTTAA
1 AAACCCAAAATTAAACCCTAA
1417358 A
1 A
1417359 TCCCAATTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.53, C:0.26, G:0.00, T:0.21
Consensus pattern (21 bp):
AAACCCAAAATTAAACCCTAA
Found at i:1417589 original size:43 final size:42
Alignment explanation
Indices: 1417537--1417657 Score: 131
Period size: 43 Copynumber: 2.9 Consensus size: 42
1417527 CACCAAACCC
1417537 TAAACCCTAAA-CTCCAAACCCTAAACCTCAAACCCTAAAATCT
1 TAAACCCTAAACCT-CAAACCCTAAACCT-AAACCCTAAAATCT
* * * *
1417580 TAAACCCTAAACCTTAAACTCTAAACCTAAACCCT-AAACCC
1 TAAACCCTAAACCTCAAACCCTAAACCTAAACCCTAAAATCT
* * *
1417621 TAAA-CCTAAACCTTAAAACTTAAACCCTAAACCCTAA
1 TAAACCCTAAACCTCAAACCCTAAA-CCTAAACCCTAA
1417658 TGTTTTATGT
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
40 17 0.25
41 18 0.26
42 8 0.12
43 23 0.34
44 2 0.03
ACGTcount: A:0.45, C:0.35, G:0.00, T:0.20
Consensus pattern (42 bp):
TAAACCCTAAACCTCAAACCCTAAACCTAAACCCTAAAATCT
Found at i:1417592 original size:7 final size:7
Alignment explanation
Indices: 1417512--1417657 Score: 140
Period size: 7 Copynumber: 21.0 Consensus size: 7
1417502 AAAAGCTCTT
*
1417512 ACCCCAA
1 ACCCTAA
*
1417519 ACCCCAA
1 ACCCTAA
1417526 ACACC-AA
1 AC-CCTAA
1417533 ACCCTAA
1 ACCCTAA
1417540 ACCCTAA
1 ACCCTAA
1417547 ACTCC-AA
1 AC-CCTAA
1417554 ACCCTAA
1 ACCCTAA
1417561 A-CCTCAA
1 ACCCT-AA
1417568 ACCCTAAA
1 ACCCT-AA
* *
1417576 ATCTTAA
1 ACCCTAA
1417583 ACCCTAA
1 ACCCTAA
*
1417590 ACCTTAA
1 ACCCTAA
*
1417597 ACTCTAA
1 ACCCTAA
1417604 A-CCTAA
1 ACCCTAA
1417610 ACCCTAA
1 ACCCTAA
1417617 ACCCTAA
1 ACCCTAA
1417624 A-CCTAA
1 ACCCTAA
*
1417630 ACCTTAA
1 ACCCTAA
* *
1417637 AACTTAA
1 ACCCTAA
1417644 ACCCTAA
1 ACCCTAA
1417651 ACCCTAA
1 ACCCTAA
1417658 TGTTTTATGT
Statistics
Matches: 118, Mismatches: 13, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
6 18 0.15
7 88 0.75
8 12 0.10
ACGTcount: A:0.45, C:0.38, G:0.00, T:0.16
Consensus pattern (7 bp):
ACCCTAA
Found at i:1417610 original size:20 final size:20
Alignment explanation
Indices: 1417531--1417657 Score: 123
Period size: 20 Copynumber: 6.1 Consensus size: 20
1417521 CCCAAACACC
*
1417531 AAACCCTAAACCCTAAACTCC-
1 AAACTCTAAA-CCTAAAC-CCT
*
1417552 AAACCCTAAACCTCAAACCCT
1 AAACTCTAAACCT-AAACCCT
* *
1417573 AAAATCTTAAACCCTAAACCTT
1 AAACTC-TAAA-CCTAAACCCT
1417595 AAACTCTAAACCTAAACCCT
1 AAACTCTAAACCTAAACCCT
* *
1417615 AAACCCTAAACCTAAACCTT
1 AAACTCTAAACCTAAACCCT
1417635 AAAACT-TAAACCCTAAACCCT
1 -AAACTCTAAA-CCTAAACCCT
1417656 AA
1 AA
1417658 TGTTTTATGT
Statistics
Matches: 91, Mismatches: 9, Indels: 13
0.81 0.08 0.12
Matches are distributed among these distances:
20 38 0.42
21 35 0.38
22 15 0.16
23 3 0.03
ACGTcount: A:0.46, C:0.35, G:0.00, T:0.19
Consensus pattern (20 bp):
AAACTCTAAACCTAAACCCT
Found at i:1417755 original size:15 final size:15
Alignment explanation
Indices: 1417735--1417810 Score: 55
Period size: 15 Copynumber: 5.1 Consensus size: 15
1417725 AGATTTACAA
*
1417735 TTTAGGGTTTGAGGT
1 TTTAGGGGTTGAGGT
*
1417750 TTTAGGGGTTG-GGG
1 TTTAGGGGTTGAGGT
* * *
1417764 TTTGGGGGTTGGGGG
1 TTTAGGGGTTGAGGT
* * *
1417779 TTTAGGAGTTGGGGG
1 TTTAGGGGTTGAGGT
* *
1417794 TTTGGGGGTTGGGGT
1 TTTAGGGGTTGAGGT
1417809 TT
1 TT
1417811 GGGGTTTAAG
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
14 12 0.23
15 40 0.77
ACGTcount: A:0.07, C:0.00, G:0.54, T:0.39
Consensus pattern (15 bp):
TTTAGGGGTTGAGGT
Found at i:1417773 original size:14 final size:15
Alignment explanation
Indices: 1417754--1417814 Score: 90
Period size: 15 Copynumber: 4.2 Consensus size: 15
1417744 TGAGGTTTTA
1417754 GGGGTT-GGGGTTTG
1 GGGGTTGGGGGTTTG
*
1417768 GGGGTTGGGGGTTTA
1 GGGGTTGGGGGTTTG
*
1417783 GGAGTTGGGGGTTTG
1 GGGGTTGGGGGTTTG
1417798 GGGGTT-GGGGTTTG
1 GGGGTTGGGGGTTTG
1417812 GGG
1 GGG
1417815 TTTAAGATTT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
14 17 0.40
15 25 0.60
ACGTcount: A:0.03, C:0.00, G:0.64, T:0.33
Consensus pattern (15 bp):
GGGGTTGGGGGTTTG
Found at i:1417812 original size:22 final size:22
Alignment explanation
Indices: 1417739--1417814 Score: 84
Period size: 22 Copynumber: 3.5 Consensus size: 22
1417729 TTACAATTTA
* * *
1417739 GGGTTTGAGGTTTTAGGGGTTG
1 GGGTTTGGGGGTTTGGGGGTTG
1417761 GGGTTTGGGGG-TTGGGGGTTTAG
1 GGGTTTGGGGGTTTGGGGG-TT-G
*
1417784 GAG-TTGGGGGTTTGGGGGTTG
1 GGGTTTGGGGGTTTGGGGGTTG
1417805 GGGTTTGGGG
1 GGGTTTGGGG
1417815 TTTAAGATTT
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
21 9 0.20
22 26 0.58
23 10 0.22
ACGTcount: A:0.05, C:0.00, G:0.59, T:0.36
Consensus pattern (22 bp):
GGGTTTGGGGGTTTGGGGGTTG
Found at i:1418037 original size:22 final size:20
Alignment explanation
Indices: 1417887--1422765 Score: 2100
Period size: 22 Copynumber: 222.6 Consensus size: 20
1417877 GCAACCCGAA
*
1417887 AACCCGAATACCCG-ACCCCG
1 AACCCGAA-ACCCGAAACCCG
*
1417907 CAACCCCGAAACCTGAAACCCG
1 -AA-CCCGAAACCCGAAACCCG
1417929 AAACCCGAAACCCGAATAACTCCG
1 -AACCCGAAACCCG-A-AAC-CCG
*
1417953 AAACCGAGAACGCCGAAATCCCG
1 AACCCGA-AAC-CCGAAA-CCCG
1417976 ATCACCCG-AACCTCGGGAAAACCCG
1 A--ACCCGAAACC-C--G-AAACCCG
*
1418001 AA-CCG-AACCC-CAACCCG
1 AACCCGAAACCCGAAACCCG
1418018 AACCTTCGAAACCCGAAACCCG
1 AACC--CGAAACCCGAAACCCG
*
1418040 ACACCCGAAAATCCGAAACCCG
1 A-ACCCG-AAACCCGAAACCCG
1418062 AAAACCCGAAACCCGAAACCCG
1 --AACCCGAAACCCGAAACCCG
1418084 AAAACCCGAAA-CCG-AACCCG
1 --AACCCGAAACCCGAAACCCG
1418104 AAACCCGAAAACCCTGAATAACCCG
1 -AACCCG-AAACCC-G-A-AACCCG
*
1418129 AACCCGACTACCCGGAATA-CCG
1 AACCCGA-AACCC-GAA-ACCCG
1418151 AAACCCGGAAACTCCGAAACCCG
1 -AACCC-GAAAC-CCGAAACCCG
**
1418174 AAACCCTCAA-CCGAAAAACCCGG
1 -AACCCGAAACCCG--AAACCC-G
* *
1418197 AAACCCGAACCCCGAAACCCA
1 -AACCCGAAACCCGAAACCCG
* *
1418218 AACCCGACA-CCG-AACCCTA
1 AACCCGAAACCCGAAACCC-G
1418237 AACCCGAAACCCCGAAACCCG
1 AACCCGAAA-CCCGAAACCCG
* *
1418258 AAACCCGAAACCGGAAACCTG
1 -AACCCGAAACCCGAAACCCG
1418279 AA-CCGAAACCCGGAAACCCG
1 AACCCGAAACCC-GAAACCCG
*
1418299 AAACCCGAAATCCGAAACCCG
1 -AACCCGAAACCCGAAACCCG
**
1418320 AAACCC-AAACCCAGGAAA--AA
1 -AACCCGAAACCC--GAAACCCG
1418340 AACCCGTAAA-CCGAAACCCGACG
1 AACCCG-AAACCCGAAA-CC--CG
* *
1418363 AAACCCGAAAACTCCGCACCCCG
1 -AACCCG-AAAC-CCGAAACCCG
1418386 AACCCGAAAACCCGAAA-CCG
1 AACCCG-AAACCCGAAACCCG
1418406 TAACAACCCGAAAACCCGAACCCACCC-
1 ----AACCCG-AAACCCGAA---ACCCG
* *
1418433 ACCCCAAAAACTCCGAAACCCG
1 AACCC-GAAAC-CCGAAACCCG
1418455 AAAACCCGAGAACCCGAAACCCG
1 --AACCCGA-AACCCGAAACCCG
1418478 AAACCCGAAACCCGCGAATACCCG
1 -AACCCGAAA-CC-CGAA-ACCCG
1418502 AAACCCGAAACCCGAAACCCG
1 -AACCCGAAACCCGAAACCCG
1418523 AAAACCCCG-AACCCGAAA-CCG
1 --AA-CCCGAAACCCGAAACCCG
1418544 ACACCCGAAAACCCGAAACCCG
1 A-ACCCG-AAACCCGAAACCCG
1418566 AACCCCGAAACCACGGAAA-CCG
1 AA-CCCGAAACC-C-GAAACCCG
1418588 AAAATCCCGAAAACCCGAAACCCG
1 --AA-CCCG-AAACCCGAAACCCG
*
1418612 ACAACCCGAAAACCCGAACCCCG
1 --AACCCG-AAACCCGAAACCCG
*
1418635 AAATCCGAAA-CCGAAACCCG
1 -AACCCGAAACCCGAAACCCG
1418655 AACCCGTAAATCCCGAAACTCCG
1 AACCCG-AAA-CCCGAAAC-CCG
*
1418678 ACCATCCTCGCAAAAACCCGAACCCCG
1 A--A-CC-CG---AAACCCGAAACCCG
1418705 AAACCCGAAA-CCGAAACCCTG
1 -AACCCGAAACCCGAAACCC-G
* *
1418726 AAACCCGAAACCGGAACACCCTA
1 -AACCCGAAACCCGAA-ACCC-G
*
1418749 AACCCGAAAACCCGAATACCCT
1 AACCCG-AAACCCGAA-ACCCG
*
1418771 AA--TGAAACCCGGAAACCCG
1 AACCCGAAACCC-GAAACCCG
1418790 AAACCCGAAACCCGAAACCTCG
1 -AACCCGAAACCCGAAACC-CG
*
1418812 AACACCCGAAA-CCG--ACAC-
1 -A-ACCCGAAACCCGAAACCCG
1418830 AA-CCGAAAACCCGAAAACCCG
1 AACCCG-AAACCCG-AAACCCG
1418851 AAACCCGGAAACCCGAACAACCCG
1 -AACCC-GAAACCCG-A-AACCCG
1418875 AACCCGAAACCCGAAACCCG
1 AACCCGAAACCCGAAACCCG
* *
1418895 AAACCATGAACAACCGAAAAACCCG
1 -AACC-CGAA-ACCCG--AAACCCG
1418920 AAACCCGAATACCCGGAAACCCG
1 -AACCCGAA-ACCC-GAAACCCG
*
1418943 AAACCCG-AACCTGAAACCCG
1 -AACCCGAAACCCGAAACCCG
*
1418963 ATAAACCCGAAAGCCGAAA-CCG
1 ---AACCCGAAACCCGAAACCCG
1418985 AAATCCCGAAACCCGAAACCCG
1 -AA-CCCGAAACCCGAAACCCG
*
1419007 AACCCGCAACCCGAAA-CCG
1 AACCCGAAACCCGAAACCCG
1419026 AAACCCGAAACCCGAAACCCG
1 -AACCCGAAACCCGAAACCCG
1419047 AACCCGAAACCCGAAACCCG
1 AACCCGAAACCCGAAACCCG
*
1419067 AA---TAAA-CCGAAACCCG
1 AACCCGAAACCCGAAACCCG
*
1419083 AAAACCGAAGACCCGAAACTCCCG
1 -AACCCGAA-ACCCGAAA--CCCG
1419107 AACCCGAAATCCCGAAACCCG
1 AACCCGAAA-CCCGAAACCCG
1419128 AAACCCGAAAACCCGAAA----
1 -AACCCG-AAACCCGAAACCCG
1419146 AACCCGAACTACCCGAAAACCCG
1 AACCCGAA--ACCCG-AAACCCG
*
1419169 ACAACCCGAAAAGCCGAAACCCG
1 --AACCCG-AAACCCGAAACCCG
*
1419192 AACCCCCGAAACCCG----CGG
1 AA--CCCGAAACCCGAAACCCG
*
1419210 AAGCCGAAACCCGAAACCCTG
1 AACCCGAAACCCGAAACCC-G
1419231 AAACCCGAAAACCCGAAACCCG
1 -AACCCG-AAACCCGAAACCCG
1419253 ACACCGCGAAACCCGAAACCCG
1 A-ACC-CGAAACCCGAAACCCG
*
1419275 AAACCGGAAACCCG-AACCCG
1 -AACCCGAAACCCGAAACCCG
1419295 AAACCCGAAAACCCCGAAACCCG
1 -AACCCG-AAA-CCCGAAACCCG
*
1419318 AACCCG-AACCCGGAACCCG
1 AACCCGAAACCCGAAACCCG
**
1419337 AAACCCGAAA-AAG-AACTCCG
1 -AACCCGAAACCCGAAAC-CCG
1419357 AAACCCGAAA-CCGAAACCCG
1 -AACCCGAAACCCGAAACCCG
1419377 AAACCCGAAACCTCGAAAACCTCG
1 -AACCCGAAACC-CG-AAACC-CG
*
1419401 AAACCGGAAATCCCGAAAAACCCG
1 -AACCCGAAA-CCCG--AAACCCG
*
1419425 AAACCCGAAAACCCTAAACCCTGAG
1 -AACCCG-AAACCCGAAACCC---G
* *
1419450 AAACCTAATACCCGAAACCCG
1 AACCCGAA-ACCCGAAACCCG
* * *
1419471 CACCCCGCAACCCTAAACCCG
1 -AACCCGAAACCCGAAACCCG
*
1419492 ACACCCGAAACCCGAACCCCG
1 A-ACCCGAAACCCGAAACCCG
1419513 AAACCCGGAAACCCGAAAACCCG
1 -AACCC-GAAACCCG-AAACCCG
*
1419536 AATACCCTGAAACCAG-AACCCGG
1 -A-ACCC-GAAACCCGAAACCC-G
*
1419559 AACCCCG-ACCCCGAAACCCG
1 AA-CCCGAAACCCGAAACCCG
* * *
1419579 ACCCCCTATAACCCGAAA--CA
1 A-ACCCGA-AACCCGAAACCCG
1419599 AACCCGAACACCCGAAACCCGG
1 AACCCGAA-ACCCGAAACCC-G
*
1419621 ATAACCCGAAAACCCGAAACCCCTAA
1 --AACCCG-AAACCCGAAA-CCC--G
1419647 AACCCGAAA-CCGAAACCCG
1 AACCCGAAACCCGAAACCCG
*
1419666 AACCCGACACCCGAATCACCCG
1 AACCCGAAACCCGAA--ACCCG
*
1419688 AAACCGAAAAACCCGAAACCCG
1 AACCCG--AAACCCGAAACCCG
*
1419710 AAAACTCGAAACCCGAAACCCG
1 --AACCCGAAACCCGAAACCCG
1419732 AACCCCG-AACCCGGAAACCCG
1 AA-CCCGAAACCC-GAAACCCG
*
1419753 AA-CCGTTAAAACCG-AACCCG
1 AACCCG--AAACCCGAAACCCG
1419773 CAAACCCCGAAACCCGAAAAACCTCG
1 --AA-CCCGAAACCCG--AAACC-CG
*
1419799 ACCCCCGAAACCCGAAACCCG
1 A-ACCCGAAACCCGAAACCCG
1419820 AAAACCCGAAACCCGGAAACCCG
1 --AACCCGAAACCC-GAAACCCG
* *
1419843 AAACCGAAA-CCGAAAACCG
1 AACCCGAAACCCGAAACCCG
*
1419862 AAACCGAAACCCTGAAACCCG
1 AACCCGAAACCC-GAAACCCG
1419883 AAACCCGAAACCCTGAAACCCG
1 -AACCCGAAACCC-GAAACCCG
* *
1419905 AAACCCG-AACCCGACACCCTA
1 -AACCCGAAACCCGAAACCC-G
1419926 AACCTCTGTAAACCCG-AA--C-
1 AACC-C-G-AAACCCGAAACCCG
*
1419945 AACCCGAAACCCGACACCCG
1 AACCCGAAACCCGAAACCCG
*
1419965 AAACCGAAAAACCCGAAACCCG
1 AACCCG--AAACCCGAAACCCG
*
1419987 CAACCCGAAAACCC-AAACCTG
1 -AACCCG-AAACCCGAAACCCG
1420008 AAACCCTAAGAAACCTCGATAACCCG
1 -AACCC---GAAACC-CGA-AACCCG
*
1420034 AAACCCGAAAACCCGAACCTCCGGCG
1 -AACCCG-AAACCCGAA--ACC--CG
*
1420060 AAAACCGAAACCCGAAACCCG
1 -AACCCGAAACCCGAAACCCG
* * *
1420081 AAACCGAAACCCTAACTCCCG
1 AACCCGAAACCCGAA-ACCCG
*
1420102 AAACCGAAAACCCGAAAACCCG
1 AACCCG-AAACCCG-AAACCCG
1420124 AAACCCG-AACCCGTGAAACCCG
1 -AACCCGAAACCC--GAAACCCG
1420146 AAACCCGGGGAAACCCGAAAACTCCG
1 -AACCC---GAAACCCG-AAAC-CCG
*
1420172 AACACCCGAAACCCGAAACTCG
1 -A-ACCCGAAACCCGAAACCCG
1420194 AAAAACCCGGAAAAACCCGGAAACCTCGG
1 ---AACCC-G--AAACCC-GAAACC-C-G
*
1420223 ACACCCGAAAACCCTAAACCCG
1 A-ACCCG-AAACCCGAAACCCG
1420245 AAACCCCGAGAAACCCGTAAAACTCCG
1 -AA-CCC--GAAACCCG--AAAC-CCG
1420272 AACCCGTAAA-CCGAAACCCGG
1 AACCCG-AAACCCGAAACCC-G
1420293 AAAACCCGAAACCCGAAA-CCG
1 --AACCCGAAACCCGAAACCCG
1420314 AAACCCG-AACCCGAAA-CCG
1 -AACCCGAAACCCGAAACCCG
* *
1420333 AAAACCGAAA-CCGAAAACCCTA
1 -AACCCGAAACCCG-AAACCC-G
1420355 AACCCGAAA-CCGAAACCCG
1 AACCCGAAACCCGAAACCCG
*
1420374 AATAACCCGAAAACCGAAAAACCCG
1 ---AACCCGAAACCCG--AAACCCG
1420399 AA-CCGAAAACCCCGAAACCCG
1 AACCCG-AAA-CCCGAAACCCG
* *
1420420 -A-CGGAAACCCGTAACACCG
1 AACCCGAAACCCGAAAC-CCG
1420439 CAACCCGAAACCCGAAAACCCTG
1 -AACCCGAAACCCG-AAACCC-G
1420462 TAAACCCGAAAACCCCGAAACCCG
1 --AACCCG-AAA-CCCGAAACCCG
*
1420486 AAACCCGCAACCCTGAAACTCCG
1 -AACCCGAAACCC-GAAAC-CCG
1420509 AAACCCGATAACCCGAAACCCGG
1 -AACCCGA-AACCCGAAACCC-G
1420532 AA----AAACCCGAAACCCG
1 AACCCGAAACCCGAAACCCG
1420548 AAACCCGAAACCCGAAAAACCCG
1 -AACCCGAAACCCG--AAACCCG
1420571 AAACCCGAACACCCTGATAACCCG
1 -AACCCGAA-ACCC-GA-AACCCG
1420595 AAACCCGAAACCCGAATAACCCCG
1 -AACCCGAAACCCG-A-AA-CCCG
*
1420619 AAACCCTGAAAACCCGGAGAAACCG
1 -AACCC-G-AAACCC-GA-AACCCG
*
1420644 AA--CGCAA-CCGAATCACCCG
1 AACCCGAAACCCGAA--ACCCG
*
1420663 AAACCCGGAATCCCCGAAACCCTCG
1 -AACCC-GAA-ACCCGAAA-CC-CG
*
1420688 CACCCGAAAACCCCGAAACCCG
1 AACCCG-AAA-CCCGAAACCCG
1420710 AAACCCGAAA-CCG--A--C-
1 -AACCCGAAACCCGAAACCCG
**
1420725 AACCCGATAA-CCGAAACTGG
1 AACCCGA-AACCCGAAACCCG
*
1420745 AACCCCGAAACCGGAAACCCG
1 AA-CCCGAAACCCGAAACCCG
1420766 AA-CCGAAA-CCGAAAACCCG
1 AACCCGAAACCCG-AAACCCG
1420785 ATAAACCCGAAACCCGTAAACCCG
1 ---AACCCGAAACCCG-AAACCCG
* *
1420809 AAAACCCGAAACCCAAAAACCG
1 --AACCCGAAACCCGAAACCCG
* *
1420831 AACCCTATAACCCGGAAACTCG
1 AACCCGA-AACCC-GAAACCCG
*
1420853 AAACCCGAAACCCGAAACCCTA
1 -AACCCGAAACCCGAAACCC-G
1420875 AACCCGAAACCCGAAAACCCG
1 AACCCGAAACCCG-AAACCCG
*
1420896 AAACCCGGGAAACCCGCAAACCAGG
1 -AACCC--GAAACCCG-AAACC-CG
*
1420921 ATAACCCGAAACCCGTACACCC-
1 --AACCCGAAACCCG-AAACCCG
1420943 AACCCG-AACCCGGATAA-CC-
1 AACCCGAAACCC-GA-AACCCG
1420962 ACACCCG-AACCCGAAA-CCG
1 A-ACCCGAAACCCGAAACCCG
1420981 AATACCCCGAAATCCCGAAAACCCG
1 -A-A-CCCGAAA-CCCG-AAACCCG
1421006 AAACCCGAAAACCCGAATACCCG
1 -AACCCG-AAACCCGAA-ACCCG
1421029 ACACCTCCGAAACCCGAAACCCCG
1 A-A-C-CCGAAACCCGAAA-CCCG
*
1421053 AAACCCGAAACCCGAAACCCT
1 -AACCCGAAACCCGAAACCCG
1421074 AACTCCAGAAAACTCCGAACACCCGAG
1 AAC-CC-G-AAAC-CCGAA-ACCC--G
*
1421101 AAACCC-TAACCCGGAAACCCG
1 -AACCCGAAACCC-GAAACCCG
1421122 TCAA-CCGAAAAACCCG-AACCCG
1 --AACCCG--AAACCCGAAACCCG
**
1421144 AAACCCGAAACCCGAAAACCTA
1 -AACCCGAAACCCG-AAACCCG
* *
1421166 AACACG-AACCTGAAAAACCCG
1 AACCCGAAACCCG--AAACCCG
*
1421187 ACACCCGAAACCCTAAACCCG
1 A-ACCCGAAACCCGAAACCCG
**
1421208 AAACCCGAAACCCGTAAAAAC-
1 -AACCCGAAACCCG-AAACCCG
*
1421229 -ACGCC-AAACTCCGAAAATACCG
1 AAC-CCGAAAC-CCG-AAA-CCCG
1421251 AACACCGAAACCCCTGAAACCCG
1 AAC-CCGAAA-CCC-GAAACCCG
1421274 AAACCCG-AA--CGAAACCCG
1 -AACCCGAAACCCGAAACCCG
*
1421292 ATAACCCGAAACCCGAATTACCAG
1 --AACCCGAAACCCGAA--ACCCG
1421316 AAACCCGAAACCCGAAACCCG
1 -AACCCGAAACCCGAAACCCG
1421337 AAACCCGCAATACCCGAAACCCG
1 -AACCCG-AA-ACCCGAAACCCG
* *
1421360 AAACCCTAAAACCCGACACCCG
1 -AACCC-GAAACCCGAAACCCG
* *
1421382 AAACCCTAATACCCGAAAACCG
1 -AACCCGAA-ACCCGAAACCCG
***
1421404 AAAACCCGAAACCCGAAACTTT
1 --AACCCGAAACCCGAAACCCG
**
1421426 AA----AATACCCGGCACCCTG
1 AACCCGAA-ACCCGAAACCC-G
1421444 ACACCCGAAAACCCGGAAAACCC-
1 A-ACCCG-AAACCC-G-AAACCCG
*
1421467 AACCCGAAACCAGAAA----
1 AACCCGAAACCCGAAACCCG
*
1421483 ACCCCGAAACCGCGAAACCCG
1 AACCCGAAACC-CGAAACCCG
*
1421504 CCAACCCGAAACCCGAACCCCG
1 --AACCCGAAACCCGAAACCCG
* *
1421526 AAAACCGAAACCGGATAACCCG
1 -AACCCGAAACCCGA-AACCCG
*
1421548 AA--TGAAA-CCG-AACCCG
1 AACCCGAAACCCGAAACCCG
1421564 AAACCCGTCTTAAACCCGAAAACCCAG
1 -AACCCG----AAACCCG-AAACCC-G
1421591 AAACCCGAAACCCGAAACCCTG
1 -AACCCGAAACCCGAAACCC-G
* *
1421613 AAAACAGAAACCCGAAATAACCCG
1 -AACCCGAAACCCG--A-AACCCG
1421637 AAACCCTTGTAAACCCGAAACCCG
1 -AACCC--G-AAACCCGAAACCCG
1421661 AAAACCCGGAAACCCGCAAAACCCG
1 --AACCC-GAAACCCG--AAACCCG
*
1421686 AAACCCGAAACCCCGACACCCG
1 -AACCCGAAA-CCCGAAACCCG
*
1421708 -ACCCGTAAATCTCCGATAAATCCGG
1 AACCCG-AAA-C-CCG--AAA-CCCG
*
1421733 CAACCTCGAAACCTCGGAACCCG
1 -AACC-CGAAACC-CGAAACCCG
1421756 CAACCCGAAACCCGAAACCCG
1 -AACCCGAAACCCGAAACCCG
1421777 ACACCTCGAAAACCCTGGAAACCCG
1 A-ACC-CG-AAACCC--GAAACCCG
1421802 TAAAACCCTGAAATACTCCTGCAAACCCCG
1 ---AACCC-G-AA-AC-CC-G-AAA-CCCG
1421832 AAATAACCCGAAA-CCGAAACCCG
1 ----AACCCGAAACCCGAAACCCG
* *
1421855 CCACCCGAGTATACCCGTGAACCCCG
1 -AACCCGA--A-ACCC--GAAACCCG
1421881 AAACCCGAAATCCCGAAACCCG
1 -AACCCGAAA-CCCGAAACCCG
1421903 AAACCCGAAACCCGAAACCCG
1 -AACCCGAAACCCGAAACCCG
1421924 AAACCTCGAAACCCGAAACCCG
1 -AACC-CGAAACCCGAAACCCG
*
1421946 AAACCAGATAACCCCGAAAACCCGG
1 -AACCCGA-AA-CCCG-AAACCC-G
*
1421971 AAAAACCCGGAACCCGAAACCCG
1 ---AACCCGAAACCCGAAACCCG
*
1421994 CAACCCTATAACCCTCGAAACCCG
1 -AACCCGA-AA-CC-CGAAACCCG
1422018 ACACCCGAAAACCCGCAAACCCGG
1 A-ACCCG-AAACCCG-AAACCC-G
**
1422042 AAACCCG--A-TGGAAACCCG
1 -AACCCGAAACCCGAAACCCG
*
1422060 AACCGAAGAAACCCGAAAACCCG
1 AACC--CGAAACCCG-AAACCCG
* *
1422083 AAACCGAAAACACCGATACCCG
1 AACCCG-AAAC-CCGAAACCCG
*
1422105 CAACCCGAAACCGGAAACCCG
1 -AACCCGAAACCCGAAACCCG
*
1422126 AAACCCGAAACCCGCAACCCG
1 -AACCCGAAACCCGAAACCCG
1422147 AACCCGAAACCCGAAACCCG
1 AACCCGAAACCCGAAACCCG
1422167 AACCCGAAACCCGAAACCCCG
1 AACCCGAAACCCGAAA-CCCG
1422188 AAACCCGGAATACCCGAAAACTCCG
1 -AACCC-GAA-ACCCG-AAAC-CCG
* *
1422213 ATAAACCCGAAACCCGCACCCCTG
1 ---AACCCGAAACCCGAAACCC-G
*****
1422237 AGGGAAAAACCCGAAAACCCG
1 AACCCGAAACCCG-AAACCCG
1422258 AATACCCCGAAAACCCGAAAACCCG
1 -A-A-CCCG-AAACCCG-AAACCCG
1422283 ACACCCGAAACCCGAAACCCG
1 A-ACCCGAAACCCGAAACCCG
1422304 AAACCCGAAATCCCGAAACCCG
1 -AACCCGAAA-CCCGAAACCCG
1422326 AACCCGAAACCCGGAAA--CG
1 AACCCGAAACCC-GAAACCCG
1422345 --CCCGGAAACCCG-AA-CCG
1 AACCC-GAAACCCGAAACCCG
*
1422362 AAACCCGAAACCTGAAACCCG
1 -AACCCGAAACCCGAAACCCG
1422383 AACCCGAAACTCCGAAACCCG
1 AACCCGAAAC-CCGAAACCCG
*
1422404 AAACCCGACAAACCCGTAAAAACCG
1 -AACCCG--AAACCCG--AAACCCG
*
1422429 AAAACCTCTAAACCCGAAACCCG
1 --AACC-CGAAACCCGAAACCCG
* **
1422452 AAACCCGGAAACCAGAAACCTAA
1 -AACCC-GAAACCCGAAACC-CG
1422475 AACCCGAAA-CCGAAACCCG
1 AACCCGAAACCCGAAACCCG
1422494 AAACCCGGAAATCCCGAAA--CG
1 -AACCC-GAAA-CCCGAAACCCG
1422515 AAACCCGAAACCCGTAAAAACCCG
1 -AACCCGAAACCCG---AAACCCG
* * *
1422539 AACCCGAAA-ACTACACCCTG
1 AACCCGAAACCCGAAACCC-G
** * *
1422559 AA--AAAAACCCTAAAACCAGG
1 AACCCGAAACCC-GAAACC-CG
1422579 AAACCCGAAAACCCGGACAACCCG
1 -AACCCG-AAACCC-GA-AACCCG
1422603 AATAACCCTGAAACCCGAAA-CCG
1 ---AACCC-GAAACCCGAAACCCG
*
1422626 AAAACCCGAAACCCGCAACCCG
1 --AACCCGAAACCCGAAACCCG
*
1422648 TAAACCCTAAACCCGAAAACCCG
1 --AACCCGAAACCCG-AAACCCG
*
1422671 AAAAAACCCTGACACCCGAAACCCG
1 ----AACCC-GAAACCCGAAACCCG
* **
1422696 AA-CCGAAACCCTAAACCTA
1 AACCCGAAACCCGAAACCCG
* * *
1422715 AAACCTAAACCC-AAACCCTC
1 AACCCGAAACCCGAAACCC-G
* * *
1422735 AACCCCAAACCCTAAAACCG
1 AACCCGAAACCCGAAACCCG
*
1422755 AACCCGCAACC
1 AACCCGAAACC
1422766 TAAACCCTAA
Statistics
Matches: 3915, Mismatches: 363, Indels: 1161
0.72 0.07 0.21
Matches are distributed among these distances:
14 7 0.00
15 8 0.00
16 55 0.01
17 64 0.02
18 60 0.02
19 239 0.06
20 460 0.12
21 589 0.15
22 825 0.21
23 631 0.16
24 500 0.13
25 240 0.06
26 127 0.03
27 67 0.02
28 21 0.01
29 11 0.00
30 5 0.00
31 6 0.00
ACGTcount: A:0.41, C:0.40, G:0.14, T:0.04
Consensus pattern (20 bp):
AACCCGAAACCCGAAACCCG
Found at i:1418658 original size:6 final size:7
Alignment explanation
Indices: 1417879--1425716 Score: 3344
Period size: 7 Copynumber: 1068.6 Consensus size: 7
1417869 TACCGAACGC
1417879 AACCCGAA
1 AACCCG-A
1417887 AACCCGA
1 AACCCGA
1417894 ATACCCG-
1 A-ACCCGA
*
1417901 ACCCCGCA
1 AACCCG-A
*
1417909 ACCCCGA
1 AACCCGA
*
1417916 AACCTGA
1 AACCCGA
1417923 AACCCGA
1 AACCCGA
1417930 AACCCGA
1 AACCCGA
1417937 AACCCGAA
1 AACCCG-A
1417945 TAACTCCGA
1 -AAC-CCGA
1417954 AA-CCGA
1 AACCCGA
1417960 GAACGCCGA
1 -AAC-CCGA
1417969 AATCCCGA
1 AA-CCCGA
*
1417977 TCACCCG-
1 -AACCCGA
1417984 AACCTCGGGAA
1 AACC-C--G-A
1417995 AACCCG-
1 AACCCGA
1418001 AA-CCG-
1 AACCCGA
*
1418006 AACCC-C
1 AACCCGA
1418012 AACCCG-
1 AACCCGA
1418018 AACCTTCGA
1 AACC--CGA
1418027 AACCCGA
1 AACCCGA
1418034 AACCCGA
1 AACCCGA
*
1418041 CACCCGAA
1 AACCCG-A
*
1418049 AATCCGA
1 AACCCGA
1418056 AACCCGAA
1 AACCCG-A
1418064 AACCCGA
1 AACCCGA
1418071 AACCCGA
1 AACCCGA
1418078 AACCCGAA
1 AACCCG-A
1418086 AACCCGA
1 AACCCGA
1418093 AA-CCG-
1 AACCCGA
1418098 AACCCGA
1 AACCCGA
1418105 AACCCGAA
1 AACCCG-A
1418113 AACCCTGAA
1 AACCC-G-A
1418122 TAACCCG-
1 -AACCCGA
1418129 AACCCGA
1 AACCCGA
*
1418136 CTACCCGGA
1 -AACCC-GA
1418145 ATA-CCGA
1 A-ACCCGA
1418152 AACCCGGA
1 AACCC-GA
1418160 AACTCCGA
1 AAC-CCGA
1418168 AACCCGA
1 AACCCGA
**
1418175 AACCCTC
1 AACCCGA
1418182 AA-CCGAAA
1 AACCCG--A
1418190 AACCCGGA
1 AACCC-GA
1418198 AACCCGA
1 AACCCGA
*
1418205 ACCCCGA
1 AACCCGA
1418212 AACCC-A
1 AACCCGA
1418218 AACCCGA
1 AACCCGA
*
1418225 CA-CCG-
1 AACCCGA
*
1418230 AACCCTA
1 AACCCGA
1418237 AACCCGA
1 AACCCGA
1418244 AACCCCGA
1 AA-CCCGA
1418252 AACCCGA
1 AACCCGA
1418259 AACCCGA
1 AACCCGA
*
1418266 AACCGGA
1 AACCCGA
*
1418273 AACCTG-
1 AACCCGA
1418279 AA-CCGA
1 AACCCGA
1418285 AACCCGGA
1 AACCC-GA
1418293 AACCCGA
1 AACCCGA
1418300 AACCCGA
1 AACCCGA
*
1418307 AATCCGA
1 AACCCGA
1418314 AACCCGA
1 AACCCGA
1418321 AACCC-A
1 AACCCGA
1418327 AACCCAGGA
1 AACCC--GA
*
1418336 AA---AA
1 AACCCGA
1418340 AACCCGTA
1 AACCCG-A
1418348 AA-CCGA
1 AACCCGA
1418354 AACCCGACGA
1 AA-CC--CGA
1418364 AACCCGAA
1 AACCCG-A
*
1418372 AACTCCGC
1 AAC-CCGA
*
1418380 ACCCCG-
1 AACCCGA
1418386 AACCCGAA
1 AACCCG-A
1418394 AACCCGA
1 AACCCGA
1418401 AA-CCGTAA
1 AACCCG--A
1418409 CAACCCGAA
1 -AACCCG-A
1418418 AACCCGA
1 AACCCGA
* **
1418425 ACCCACCC
1 AACC-CGA
* *
1418433 ACCCCAAA
1 AACCC-GA
1418441 AACTCCGA
1 AAC-CCGA
1418449 AACCCGAA
1 AACCCG-A
1418457 AACCCGA
1 AACCCGA
1418464 GAACCCGA
1 -AACCCGA
1418472 AACCCGA
1 AACCCGA
1418479 AACCCGA
1 AACCCGA
1418486 AACCCGCGA
1 AA-CC-CGA
1418495 ATACCCGA
1 A-ACCCGA
1418503 AACCCGA
1 AACCCGA
1418510 AACCCGA
1 AACCCGA
1418517 AACCCGAA
1 AACCCG-A
1418525 AACCCCG-
1 AA-CCCGA
1418532 AACCCGA
1 AACCCGA
1418539 AA-CCGA
1 AACCCGA
*
1418545 CACCCGAA
1 AACCCG-A
1418553 AACCCGA
1 AACCCGA
1418560 AACCCGA
1 AACCCGA
*
1418567 ACCCCGA
1 AACCCGA
1418574 AACCACGGA
1 AACC-C-GA
1418583 AA-CCGAA
1 AACCCG-A
1418590 AATCCCGAA
1 AA-CCCG-A
1418599 AACCCGA
1 AACCCGA
1418606 AACCCGA
1 AACCCGA
1418613 CAACCCGAA
1 -AACCCG-A
1418622 AACCCGA
1 AACCCGA
*
1418629 ACCCCGA
1 AACCCGA
*
1418636 AATCCGA
1 AACCCGA
1418643 AA-CCGA
1 AACCCGA
1418649 AACCCG-
1 AACCCGA
1418655 AACCCGTA
1 AACCCG-A
1418663 AATCCCGA
1 AA-CCCGA
1418671 AACTCCGA
1 AAC-CCGA
*
1418679 CCATCCTCGCAAA
1 --AACC-CG---A
1418692 AACCCGA
1 AACCCGA
*
1418699 ACCCCGA
1 AACCCGA
1418706 AACCCGA
1 AACCCGA
1418713 AA-CCGA
1 AACCCGA
1418719 AACCCTGA
1 AACCC-GA
1418727 AACCCGA
1 AACCCGA
*
1418734 AACCGGA
1 AACCCGA
*
1418741 ACACCCTA
1 A-ACCCGA
1418749 AACCCGAA
1 AACCCG-A
1418757 AACCCGA
1 AACCCGA
1418764 ATACCCTAATGA
1 A-ACCC----GA
1418776 AACCCGGA
1 AACCC-GA
1418784 AACCCGA
1 AACCCGA
1418791 AACCCGA
1 AACCCGA
1418798 AACCCGA
1 AACCCGA
1418805 AACCTCGA
1 AACC-CGA
1418813 ACACCCGA
1 A-ACCCGA
1418821 AA-CCGA
1 AACCCGA
*
1418827 CACAACCGAA
1 -A-ACCCG-A
1418837 AACCCGAA
1 AACCCG-A
1418845 AACCCGA
1 AACCCGA
1418852 AACCCGGA
1 AACCC-GA
1418860 AACCCGAA
1 AACCCG-A
1418868 CAACCCG-
1 -AACCCGA
1418875 AACCCGA
1 AACCCGA
1418882 AACCCGA
1 AACCCGA
1418889 AACCCGA
1 AACCCGA
*
1418896 AACCATGA
1 AACC-CGA
*
1418904 ACAACCGAAA
1 A-ACCCG--A
1418914 AACCCGA
1 AACCCGA
1418921 AACCCGA
1 AACCCGA
1418928 ATACCCGGA
1 A-ACCC-GA
1418937 AACCCGA
1 AACCCGA
1418944 AACCCG-
1 AACCCGA
*
1418950 AACCTGA
1 AACCCGA
1418957 AACCCGATA
1 AACCCG--A
1418966 AACCCGA
1 AACCCGA
*
1418973 AAGCCGA
1 AACCCGA
1418980 AA-CCGA
1 AACCCGA
1418986 AATCCCGA
1 AA-CCCGA
1418994 AACCCGA
1 AACCCGA
1419001 AACCCG-
1 AACCCGA
*
1419007 AACCCGC
1 AACCCGA
1419014 AACCCGA
1 AACCCGA
1419021 AA-CCGA
1 AACCCGA
1419027 AACCCGA
1 AACCCGA
1419034 AACCCGA
1 AACCCGA
1419041 AACCCG-
1 AACCCGA
1419047 AACCCGA
1 AACCCGA
1419054 AACCCGA
1 AACCCGA
1419061 AACCCGAA
1 AACCCG-A
*
1419069 TAAACCGA
1 -AACCCGA
1419077 AACCCGA
1 AACCCGA
*
1419084 AAACCGA
1 AACCCGA
1419091 AGACCCGA
1 A-ACCCGA
1419099 AACTCCCG-
1 AA--CCCGA
1419107 AACCCGA
1 AACCCGA
1419114 AATCCCGA
1 AA-CCCGA
1419122 AACCCGA
1 AACCCGA
1419129 AACCCGAA
1 AACCCG-A
1419137 AACCCGAAA
1 AACCCG--A
1419146 AACCCGA
1 AACCCGA
1419153 ACTACCCGAA
1 A--ACCCG-A
1419163 AACCCGA
1 AACCCGA
1419170 CAACCCGAA
1 -AACCCG-A
*
1419179 AAGCCGA
1 AACCCGA
1419186 AACCCGA
1 AACCCGA
*
1419193 ACCCCCGA
1 A-ACCCGA
*
1419201 AACCCGCGG
1 AA-CC-CGA
*
1419210 AAGCCGA
1 AACCCGA
1419217 AACCCGA
1 AACCCGA
1419224 AACCCTGA
1 AACCC-GA
1419232 AACCCGAA
1 AACCCG-A
1419240 AACCCGA
1 AACCCGA
1419247 AACCCGA
1 AACCCGA
*
1419254 CACCGCGA
1 AACC-CGA
1419262 AACCCGA
1 AACCCGA
1419269 AACCCGA
1 AACCCGA
*
1419276 AACCGGA
1 AACCCGA
1419283 AACCCG-
1 AACCCGA
1419289 AACCCGA
1 AACCCGA
1419296 AACCCGAA
1 AACCCG-A
1419304 AACCCCGA
1 AA-CCCGA
1419312 AACCCG-
1 AACCCGA
1419318 AACCCG-
1 AACCCGA
*
1419324 AACCCGG
1 AACCCGA
1419331 AACCCGA
1 AACCCGA
1419338 AACCCGA
1 AACCCGA
**
1419345 AA-AAG-
1 AACCCGA
1419350 AACTCCGA
1 AAC-CCGA
1419358 AACCCGA
1 AACCCGA
1419365 AA-CCGA
1 AACCCGA
1419371 AACCCGA
1 AACCCGA
1419378 AACCCGA
1 AACCCGA
1419385 AACCTCGAA
1 AACC-CG-A
1419394 AACCTCGA
1 AACC-CGA
*
1419402 AACCGGA
1 AACCCGA
1419409 AATCCCGAAA
1 AA-CCCG--A
1419419 AACCCGA
1 AACCCGA
1419426 AACCCGAA
1 AACCCG-A
*
1419434 AACCCTA
1 AACCCGA
1419441 AACCCTGA
1 AACCC-GA
* *
1419449 GAAACCTA
1 -AACCCGA
1419457 ATACCCGA
1 A-ACCCGA
*
1419465 AACCCGC
1 AACCCGA
* *
1419472 ACCCCGC
1 AACCCGA
*
1419479 AACCCTA
1 AACCCGA
1419486 AACCCGA
1 AACCCGA
*
1419493 CACCCGA
1 AACCCGA
1419500 AACCCGA
1 AACCCGA
*
1419507 ACCCCGA
1 AACCCGA
1419514 AACCCGGA
1 AACCC-GA
1419522 AACCCGAA
1 AACCCG-A
1419530 AACCCGA
1 AACCCGA
1419537 ATACCCTGA
1 A-ACCC-GA
*
1419546 AACCAG-
1 AACCCGA
1419552 AACCCGGA
1 AACCC-GA
*
1419560 ACCCCG-
1 AACCCGA
*
1419566 ACCCCGA
1 AACCCGA
1419573 AACCCGA
1 AACCCGA
** *
1419580 CCCCCTA
1 AACCCGA
1419587 TAACCCGA
1 -AACCCGA
1419595 AA--C-A
1 AACCCGA
1419599 AACCCGA
1 AACCCGA
1419606 ACACCCGA
1 A-ACCCGA
1419614 AACCCGGA
1 AACCC-GA
1419622 TAACCCGAA
1 -AACCCG-A
1419631 AACCCGA
1 AACCCGA
*
1419638 AACCCCTAA
1 AA-CCC-GA
1419647 AACCCGA
1 AACCCGA
1419654 AA-CCGA
1 AACCCGA
1419660 AACCCG-
1 AACCCGA
1419666 AACCCGA
1 AACCCGA
*
1419673 CACCCGA
1 AACCCGA
1419680 ATCACCCGA
1 A--ACCCGA
1419689 AA-CCGAAA
1 AACCCG--A
1419697 AACCCGA
1 AACCCGA
1419704 AACCCGAA
1 AACCCG-A
*
1419712 AACTCGA
1 AACCCGA
1419719 AACCCGA
1 AACCCGA
1419726 AACCCGA
1 AACCCGA
*
1419733 ACCCCG-
1 AACCCGA
1419739 AACCCGGA
1 AACCC-GA
1419747 AACCCG-
1 AACCCGA
1419753 AA-CCGTTA
1 AACCCG--A
*
1419761 AAACCG-
1 AACCCGA
1419767 AACCCGCA
1 AACCCG-A
1419775 AACCCCGA
1 AA-CCCGA
1419783 AACCCGAAA
1 AACCCG--A
1419792 AACCTCGA
1 AACC-CGA
**
1419800 CCCCCGA
1 AACCCGA
1419807 AACCCGA
1 AACCCGA
1419814 AACCCGAA
1 AACCCG-A
1419822 AACCCGA
1 AACCCGA
1419829 AACCCGGA
1 AACCC-GA
1419837 AACCCGA
1 AACCCGA
1419844 AA-CCGA
1 AACCCGA
1419850 AA-CCGA
1 AACCCGA
*
1419856 AAACCGA
1 AACCCGA
1419863 AA-CCGA
1 AACCCGA
1419869 AACCCTGA
1 AACCC-GA
1419877 AACCCGA
1 AACCCGA
1419884 AACCCGA
1 AACCCGA
1419891 AACCCTGA
1 AACCC-GA
1419899 AACCCGA
1 AACCCGA
1419906 AACCCG-
1 AACCCGA
1419912 AACCCGA
1 AACCCGA
* *
1419919 CACCCTA
1 AACCCGA
1419926 AACCTCTGTA
1 AACC-C-G-A
1419936 AACCCGAA
1 AACCCG-A
1419944 CAACCCGA
1 -AACCCGA
1419952 AACCCGA
1 AACCCGA
*
1419959 CACCCGA
1 AACCCGA
1419966 AA-CCGAAA
1 AACCCG--A
1419974 AACCCGA
1 AACCCGA
*
1419981 AACCCGC
1 AACCCGA
1419988 AACCCGAA
1 AACCCG-A
1419996 AACCC-A
1 AACCCGA
*
1420002 AACCTGA
1 AACCCGA
1420009 AACCCTAAGA
1 AACCC---GA
1420019 AACCTCGA
1 AACC-CGA
1420027 TAACCCGA
1 -AACCCGA
1420035 AACCCGAA
1 AACCCG-A
1420043 AACCCGA
1 AACCCGA
*
1420050 ACCTCCGGCGA
1 A--ACC--CGA
*
1420061 AAACCGA
1 AACCCGA
1420068 AACCCGA
1 AACCCGA
1420075 AACCCGA
1 AACCCGA
1420082 AA-CCGA
1 AACCCGA
*
1420088 AACCCTA
1 AACCCGA
*
1420095 ACTCCCGA
1 A-ACCCGA
1420103 AA-CCGAA
1 AACCCG-A
1420110 AACCCGAA
1 AACCCG-A
1420118 AACCCGA
1 AACCCGA
1420125 AACCCG-
1 AACCCGA
1420131 AACCCGTGA
1 AACCC--GA
1420140 AACCCGA
1 AACCCGA
1420147 AACCCGGGGA
1 AACCC---GA
1420157 AACCCGAA
1 AACCCG-A
1420165 AACTCCGA
1 AAC-CCGA
1420173 ACACCCGA
1 A-ACCCGA
1420181 AACCCGA
1 AACCCGA
*
1420188 AACTCGAAA
1 AACCCG--A
1420197 AACCCGGAAA
1 AACCC-G--A
1420207 AACCCGGA
1 AACCC-GA
1420215 AACCTCGGA
1 AACC-C-GA
*
1420224 CACCCGAA
1 AACCCG-A
*
1420232 AACCCTA
1 AACCCGA
1420239 AACCCGA
1 AACCCGA
1420246 AACCCCGAGA
1 AA-CCC--GA
1420256 AACCCGTAA
1 AACCCG--A
1420265 AACTCCG-
1 AAC-CCGA
1420272 AACCCGTA
1 AACCCG-A
1420280 AA-CCGA
1 AACCCGA
1420286 AACCCGGAA
1 AACCC-G-A
1420295 AACCCGA
1 AACCCGA
1420302 AACCCGA
1 AACCCGA
1420309 AA-CCGA
1 AACCCGA
1420315 AACCCG-
1 AACCCGA
1420321 AACCCGA
1 AACCCGA
1420328 AA-CCGA
1 AACCCGA
*
1420334 AAACCGA
1 AACCCGA
1420341 AA-CCGAA
1 AACCCG-A
*
1420348 AACCCTA
1 AACCCGA
1420355 AACCCGA
1 AACCCGA
1420362 AA-CCGA
1 AACCCGA
1420368 AACCCGAA
1 AACCCG-A
1420376 TAACCCGA
1 -AACCCGA
*
1420384 AAACCGAAA
1 AACCCG--A
1420393 AACCCG-
1 AACCCGA
1420399 AA-CCGAA
1 AACCCG-A
1420406 AACCCCGA
1 AA-CCCGA
1420414 AACCCG-
1 AACCCGA
*
1420420 -A-CGGA
1 AACCCGA
*
1420425 AACCCGT
1 AACCCGA
*
1420432 AACACCGC
1 AAC-CCGA
1420440 AACCCGA
1 AACCCGA
1420447 AACCCGAA
1 AACCCG-A
1420455 AACCCTGTA
1 AACCC-G-A
1420464 AACCCGAA
1 AACCCG-A
1420472 AACCCCGA
1 AA-CCCGA
1420480 AACCCGA
1 AACCCGA
*
1420487 AACCCGC
1 AACCCGA
1420494 AACCCTGA
1 AACCC-GA
1420502 AACTCCGA
1 AAC-CCGA
1420510 AACCCGA
1 AACCCGA
1420517 TAACCCGA
1 -AACCCGA
1420525 AACCCGGAAA
1 AACCC-G--A
1420535 AACCCGA
1 AACCCGA
1420542 AACCCGA
1 AACCCGA
1420549 AACCCGA
1 AACCCGA
1420556 AACCCGAAA
1 AACCCG--A
1420565 AACCCGA
1 AACCCGA
1420572 AACCCGA
1 AACCCGA
1420579 ACACCCTGA
1 A-ACCC-GA
1420588 TAACCCGA
1 -AACCCGA
1420596 AACCCGA
1 AACCCGA
1420603 AACCCGAA
1 AACCCG-A
1420611 TAACCCCGA
1 -AA-CCCGA
1420620 AACCCTGAA
1 AACCC-G-A
1420629 AACCCGGA
1 AACCC-GA
*
1420637 GAAACCGA
1 -AACCCGA
*
1420645 ACGCAACCGA
1 A---ACCCGA
1420655 ATCACCCGA
1 A--ACCCGA
1420664 AACCCGGA
1 AACCC-GA
*
1420672 ATCCCCGA
1 A-ACCCGA
1420680 AACCCTCG-
1 AA-CC-CGA
*
1420688 CACCCGAA
1 AACCCG-A
1420696 AACCCCGA
1 AA-CCCGA
1420704 AACCCGA
1 AACCCGA
1420711 AACCCGA
1 AACCCGA
1420718 AA-CCGA
1 AACCCGA
1420724 CAACCCGA
1 -AACCCGA
1420732 TAA-CCGA
1 -AACCCGA
**
1420739 AACTGGA
1 AACCCGA
*
1420746 ACCCCGA
1 AACCCGA
*
1420753 AACCGGA
1 AACCCGA
1420760 AACCCG-
1 AACCCGA
1420766 AA-CCGA
1 AACCCGA
1420772 AA-CCGAA
1 AACCCG-A
1420779 AACCCGATA
1 AACCCG--A
1420788 AACCCGA
1 AACCCGA
1420795 AACCCGTA
1 AACCCG-A
1420803 AACCCGAA
1 AACCCG-A
1420811 AACCCGA
1 AACCCGA
*
1420818 AACCCAA
1 AACCCGA
*
1420825 AAACCG-
1 AACCCGA
*
1420831 AACCCTA
1 AACCCGA
1420838 TAACCCGGA
1 -AACCC-GA
*
1420847 AACTCGA
1 AACCCGA
1420854 AACCCGA
1 AACCCGA
1420861 AACCCGA
1 AACCCGA
*
1420868 AACCCTA
1 AACCCGA
1420875 AACCCGA
1 AACCCGA
1420882 AACCCGAA
1 AACCCG-A
1420890 AACCCGA
1 AACCCGA
1420897 AACCCGGGA
1 AACCC--GA
1420906 AACCCGCA
1 AACCCG-A
*
1420914 AACCAGGA
1 AACC-CGA
1420922 TAACCCGA
1 -AACCCGA
1420930 AACCCGTA
1 AACCCG-A
*
1420938 CACCC--
1 AACCCGA
1420943 AACCCG-
1 AACCCGA
1420949 AACCCGGA
1 AACCC-GA
1420957 TAA-CC-A
1 -AACCCGA
*
1420963 CACCCG-
1 AACCCGA
1420969 AACCCGA
1 AACCCGA
1420976 AA-CCGA
1 AACCCGA
1420982 ATACCCCGA
1 A-A-CCCGA
1420991 AATCCCGAA
1 AA-CCCG-A
1421000 AACCCGA
1 AACCCGA
1421007 AACCCGAA
1 AACCCG-A
1421015 AACCCGA
1 AACCCGA
1421022 ATACCCGA
1 A-ACCCGA
*
1421030 CACCTCCGA
1 -AAC-CCGA
1421039 AACCCGA
1 AACCCGA
1421046 AACCCCGA
1 AA-CCCGA
1421054 AACCCGA
1 AACCCGA
1421061 AACCCGA
1 AACCCGA
*
1421068 AACCC-T
1 AACCCGA
1421074 AACTCCAGAA
1 AAC-CC-G-A
1421084 AACTCCGA
1 AAC-CCGA
1421092 ACACCCGAGA
1 A-ACCC--GA
*
1421102 AACCC-T
1 AACCCGA
1421108 AACCCGGA
1 AACCC-GA
*
1421116 AACCCGTC
1 AACCCG-A
1421124 AA-CCGAAA
1 AACCCG--A
1421132 AACCCG-
1 AACCCGA
1421138 AACCCGA
1 AACCCGA
1421145 AACCCGA
1 AACCCGA
1421152 AACCCGA
1 AACCCGA
* *
1421159 AAACCTA
1 AACCCGA
*
1421166 AACACG-
1 AACCCGA
*
1421172 AACCTGAAA
1 AACCCG--A
1421181 AACCCGA
1 AACCCGA
*
1421188 CACCCGA
1 AACCCGA
*
1421195 AACCCTA
1 AACCCGA
1421202 AACCCGA
1 AACCCGA
1421209 AACCCGA
1 AACCCGA
1421216 AACCCGTAAA
1 AACCCG---A
*
1421226 AACACGCCA
1 AAC-C-CGA
1421235 AACTCCGAA
1 AAC-CCG-A
*
1421244 AATACCG-
1 AA-CCCGA
1421251 AACACCGA
1 AAC-CCGA
1421259 AACCCCTGA
1 AA-CCC-GA
1421268 AACCCGA
1 AACCCGA
1421275 AACCCG-
1 AACCCGA
1421281 AA--CGA
1 AACCCGA
1421286 AACCCGA
1 AACCCGA
1421293 TAACCCGA
1 -AACCCGA
1421301 AACCCGA
1 AACCCGA
*
1421308 ATTACCAGA
1 A--ACCCGA
1421317 AACCCGA
1 AACCCGA
1421324 AACCCGA
1 AACCCGA
1421331 AACCCGA
1 AACCCGA
1421338 AACCCGCA
1 AACCCG-A
1421346 ATACCCGA
1 A-ACCCGA
1421354 AACCCGA
1 AACCCGA
*
1421361 AACCCTAA
1 AACCC-GA
1421369 AACCCGA
1 AACCCGA
*
1421376 CACCCGA
1 AACCCGA
*
1421383 AACCCTA
1 AACCCGA
1421390 ATACCCGA
1 A-ACCCGA
*
1421398 AAACCGAA
1 AACCCG-A
1421406 AACCCGA
1 AACCCGA
1421413 AACCCGA
1 AACCCGA
***
1421420 AACTTTAAA
1 AAC--CCGA
*
1421429 ATACCCGG
1 A-ACCCGA
*
1421437 CACCCTGA
1 AACCC-GA
*
1421445 CACCCGAA
1 AACCCG-A
1421453 AACCCGGAA
1 AACCC-G-A
1421462 AACCC--
1 AACCCGA
1421467 AACCCGA
1 AACCCGA
*
1421474 AACCAGAA
1 AACCCG-A
1421482 AACCCCGA
1 AA-CCCGA
1421490 AACCGCGA
1 AACC-CGA
*
1421498 AACCCGCC
1 AACCCG-A
1421506 AACCCGA
1 AACCCGA
1421513 AACCCGA
1 AACCCGA
*
1421520 ACCCCGA
1 AACCCGA
*
1421527 AAACCGA
1 AACCCGA
*
1421534 AACCGGA
1 AACCCGA
1421541 TAACCCGAA
1 -AACCCG-A
*
1421550 TGAAACCG-
1 --AACCCGA
1421558 AACCCGA
1 AACCCGA
1421565 AACCCGTCTTA
1 AACCCG----A
1421576 AACCCGAA
1 AACCCG-A
1421584 AACCCAGA
1 AACCC-GA
1421592 AACCCGA
1 AACCCGA
1421599 AACCCGA
1 AACCCGA
1421606 AACCCTGA
1 AACCC-GA
* *
1421614 AAACAGA
1 AACCCGA
1421621 AACCCGAAA
1 AACCCG--A
1421630 TAACCCGA
1 -AACCCGA
1421638 AACCCTTGTA
1 AACCC--G-A
1421648 AACCCGA
1 AACCCGA
1421655 AACCCGAA
1 AACCCG-A
1421663 AACCCGGA
1 AACCC-GA
1421671 AACCCGCAA
1 AACCCG--A
1421680 AACCCGA
1 AACCCGA
1421687 AACCCGA
1 AACCCGA
1421694 AACCCCGA
1 AA-CCCGA
*
1421702 CACCCG-
1 AACCCGA
1421708 -ACCCGTA
1 AACCCG-A
1421715 AATCTCCGATA
1 AA-C-CCG--A
* *
1421726 AATCCGGC
1 AA-CCCGA
1421734 AACCTCGA
1 AACC-CGA
*
1421742 AACCTCGG
1 AACC-CGA
*
1421750 AACCCGC
1 AACCCGA
1421757 AACCCGA
1 AACCCGA
1421764 AACCCGA
1 AACCCGA
1421771 AACCCGA
1 AACCCGA
*
1421778 CACCTCGAA
1 AACC-CG-A
1421787 AACCCTGGA
1 AACCC--GA
1421796 AACCCGTAA
1 AACCCG--A
1421805 AACCCTGAA
1 AACCC-G-A
1421814 ATACTCCTGCA
1 A-AC-CC-G-A
1421825 AACCCCGAAA
1 AA-CCCG--A
1421835 TAACCCGA
1 -AACCCGA
1421843 AA-CCGA
1 AACCCGA
*
1421849 AACCCGC
1 AACCCGA
*
1421856 CACCCGA
1 AACCCGA
1421863 GTATACCCGTGA
1 --A-ACCC--GA
*
1421875 ACCCCGA
1 AACCCGA
1421882 AACCCGA
1 AACCCGA
1421889 AATCCCGA
1 AA-CCCGA
1421897 AACCCGA
1 AACCCGA
1421904 AACCCGA
1 AACCCGA
1421911 AACCCGA
1 AACCCGA
1421918 AACCCGA
1 AACCCGA
1421925 AACCTCGA
1 AACC-CGA
1421933 AACCCGA
1 AACCCGA
1421940 AACCCGA
1 AACCCGA
*
1421947 AACCAGA
1 AACCCGA
1421954 TAACCCCGAA
1 -AA-CCCG-A
1421964 AACCCGGAAA
1 AACCC-G--A
*
1421974 AACCCGG
1 AACCCGA
1421981 AACCCGA
1 AACCCGA
*
1421988 AACCCGC
1 AACCCGA
*
1421995 AACCCTA
1 AACCCGA
1422002 TAACCCTCGA
1 -AA-CC-CGA
1422012 AACCCGA
1 AACCCGA
*
1422019 CACCCGAA
1 AACCCG-A
1422027 AACCCGCA
1 AACCCG-A
1422035 AACCCGGA
1 AACCC-GA
1422043 AACCCGATGGA
1 AACCC----GA
1422054 AACCCG-
1 AACCCGA
*
1422060 AACCGAAGA
1 AACC--CGA
1422069 AACCCGAA
1 AACCCG-A
1422077 AACCCGA
1 AACCCGA
1422084 AA-CCGAA
1 AACCCG-A
1422091 AACACCGA
1 AAC-CCGA
* *
1422099 TACCCGC
1 AACCCGA
1422106 AACCCGA
1 AACCCGA
*
1422113 AACCGGA
1 AACCCGA
1422120 AACCCGA
1 AACCCGA
1422127 AACCCGA
1 AACCCGA
*
1422134 AACCCGC
1 AACCCGA
1422141 AACCCG-
1 AACCCGA
1422147 AACCCGA
1 AACCCGA
1422154 AACCCGA
1 AACCCGA
1422161 AACCCG-
1 AACCCGA
1422167 AACCCGA
1 AACCCGA
1422174 AACCCGA
1 AACCCGA
1422181 AACCCCGA
1 AA-CCCGA
1422189 AACCCGGA
1 AACCC-GA
1422197 ATACCCGAA
1 A-ACCCG-A
1422206 AACTCCGATA
1 AAC-CCG--A
1422216 AACCCGA
1 AACCCGA
*
1422223 AACCCGC
1 AACCCGA
*
1422230 ACCCCTG-
1 AACCC-GA
*****
1422237 AGGGAAA
1 AACCCGA
1422244 AACCCGAA
1 AACCCG-A
1422252 AACCCGA
1 AACCCGA
1422259 ATACCCCGAA
1 A-A-CCCG-A
1422269 AACCCGAA
1 AACCCG-A
1422277 AACCCGA
1 AACCCGA
*
1422284 CACCCGA
1 AACCCGA
1422291 AACCCGA
1 AACCCGA
1422298 AACCCGA
1 AACCCGA
1422305 AACCCGA
1 AACCCGA
1422312 AATCCCGA
1 AA-CCCGA
1422320 AACCCG-
1 AACCCGA
1422326 AACCCGA
1 AACCCGA
1422333 AACCCGGA
1 AACCC-GA
1422341 AACGCCCGGA
1 AA--CCC-GA
1422351 AACCCG-
1 AACCCGA
1422357 AA-CCGA
1 AACCCGA
1422363 AACCCGA
1 AACCCGA
*
1422370 AACCTGA
1 AACCCGA
1422377 AACCCG-
1 AACCCGA
1422383 AACCCGA
1 AACCCGA
1422390 AACTCCGA
1 AAC-CCGA
1422398 AACCCGA
1 AACCCGA
1422405 AACCCGACA
1 AACCCG--A
1422414 AACCCGTAA
1 AACCCG--A
*
1422423 AAACCGAA
1 AACCCG-A
*
1422431 AACCTCTA
1 AACC-CGA
1422439 AACCCGA
1 AACCCGA
1422446 AACCCGA
1 AACCCGA
1422453 AACCCGGA
1 AACCC-GA
*
1422461 AACCAGA
1 AACCCGA
**
1422468 AACCTAA
1 AACCCGA
1422475 AACCCGA
1 AACCCGA
1422482 AA-CCGA
1 AACCCGA
1422488 AACCCGA
1 AACCCGA
1422495 AACCCGGA
1 AACCC-GA
1422503 AATCCCGA
1 AA-CCCGA
1422511 AA--CGA
1 AACCCGA
1422516 AACCCGA
1 AACCCGA
1422523 AACCCGTAAA
1 AACCCG---A
1422533 AACCCG-
1 AACCCGA
1422539 AACCCGA
1 AACCCGA
* *
1422546 AA-ACTA
1 AACCCGA
*
1422552 CACCCTGA
1 AACCC-GA
*
1422560 AA---AA
1 AACCCGA
*
1422564 AACCCTAA
1 AACCC-GA
*
1422572 AACCAGGA
1 AACC-CGA
1422580 AACCCGAA
1 AACCCG-A
1422588 AACCCGGA
1 AACCC-GA
1422596 CAACCCGAA
1 -AACCCG-A
1422605 TAACCCTGA
1 -AACCC-GA
1422614 AACCCGA
1 AACCCGA
1422621 AA-CCGAA
1 AACCCG-A
1422628 AACCCGA
1 AACCCGA
*
1422635 AACCCGC
1 AACCCGA
1422642 AACCCGTA
1 AACCCG-A
*
1422650 AACCCTA
1 AACCCGA
1422657 AACCCGAA
1 AACCCG-A
1422665 AACCCGAAAA
1 AACCCG---A
1422675 AACCCTGA
1 AACCC-GA
*
1422683 CACCCGA
1 AACCCGA
1422690 AACCCG-
1 AACCCGA
1422696 AA-CCGA
1 AACCCGA
*
1422702 AACCCTA
1 AACCCGA
*
1422709 AA-CCTA
1 AACCCGA
* *
1422715 AAACCTA
1 AACCCGA
1422722 AACCC-A
1 AACCCGA
**
1422728 AACCCTC
1 AACCCGA
*
1422735 AACCCCA
1 AACCCGA
*
1422742 AACCCTA
1 AACCCGA
*
1422749 AAACCG-
1 AACCCGA
*
1422755 AACCCGC
1 AACCCGA
*
1422762 AA-CCTA
1 AACCCGA
*
1422768 AACCCTA
1 AACCCGA
1422775 AA-CCGTA
1 AACCCG-A
*
1422782 CACCCTGA
1 AACCC-GA
*
1422790 AACCCTAA
1 AACCC-GA
*
1422798 AACCCTA
1 AACCCGA
*
1422805 AACCCTA
1 AACCCGA
*
1422812 AA-CCTA
1 AACCCGA
* *
1422818 AAACCTA
1 AACCCGA
*
1422825 AATCCCTAA
1 AA-CCC-GA
*
1422834 AACCCTA
1 AACCCGA
*
1422841 AACCCTA
1 AACCCGA
*
1422848 AACCCTA
1 AACCCGA
*
1422855 AA-CCTA
1 AACCCGA
1422861 AACCC-A
1 AACCCGA
1422867 AACCCGA
1 AACCCGA
*
1422874 AACCCTA
1 AACCCGA
*
1422881 AA-CCTA
1 AACCCGA
1422887 AA-CCGA
1 AACCCGA
**
1422893 AACTCCTC
1 AAC-CCGA
*
1422901 AACCC-T
1 AACCCGA
1422907 AACCCGAAA
1 AACCCG--A
*
1422916 AACCCTTA
1 AACCC-GA
*
1422924 AACCCTA
1 AACCCGA
*
1422931 AACCCTA
1 AACCCGA
*
1422938 AACCCTA
1 AACCCGA
*
1422945 AACCCTA
1 AACCCGA
1422952 AACTCC--
1 AAC-CCGA
*
1422958 AA-CCTA
1 AACCCGA
*
1422964 AACCC-T
1 AACCCGA
*
1422970 AACCCTA
1 AACCCGA
**
1422977 AACCTAA
1 AACCCGA
*
1422984 AACCTAACCA
1 AACC---CGA
* *
1422994 ACCCCTA
1 AACCCGA
1423001 AACCCGTA
1 AACCCG-A
**
1423009 AACTCTAAA
1 AAC-C-CGA
* *
1423018 AAACCTA
1 AACCCGA
*
1423025 CAA-CC-T
1 -AACCCGA
**
1423031 AACCTAA
1 AACCCGA
* **
1423038 AAACCTT
1 AACCCGA
* *
1423045 AACACTA
1 AACCCGA
*
1423052 AA-CCTA
1 AACCCGA
*
1423058 AACCCTATA
1 AACCC--GA
*
1423067 AACCCTAA
1 AACCC-GA
*
1423075 AACCCTA
1 AACCCGA
*
1423082 AACCCTA
1 AACCCGA
*
1423089 AACCCTAA
1 AACCC-GA
* *
1423097 TAAACCTA
1 -AACCCGA
*
1423105 AACCCTA
1 AACCCGA
*
1423112 AACCCTAA
1 AACCC-GA
* *
1423120 AAACC-T
1 AACCCGA
*
1423126 AACCCTTA
1 AACCC-GA
*
1423134 AACCC-T
1 AACCCGA
*
1423140 AACCCTA
1 AACCCGA
**
1423147 ATACCCTC
1 A-ACCCGA
*
1423155 AACCCTAA
1 AACCC-GA
*
1423163 AACCCTA
1 AACCCGA
**
1423170 AACCATA
1 AACCCGA
**
1423177 AACCATA
1 AACCCGA
*
1423184 AACCCTA
1 AACCCGA
* *
1423191 ACCCCTAA
1 AACCC-GA
*
1423199 AACCCTA
1 AACCCGA
*
1423206 AACCCTA
1 AACCCGA
* *
1423213 ACCCTCAAA
1 AACC-C-GA
1423222 TAACCCTGA
1 -AACCC-GA
*
1423231 CAACTCCTA
1 -AAC-CCGA
1423240 CAA-CC-A
1 -AACCCGA
*
1423246 AA-CCTA
1 AACCCGA
**
1423252 AA-CCTT
1 AACCCGA
* *
1423258 AA-TCTA
1 AACCCGA
*
1423264 AACCCTA
1 AACCCGA
* *
1423271 ACCCCTA
1 AACCCGA
*
1423278 AACCC-T
1 AACCCGA
*
1423284 AA--CTA
1 AACCCGA
*
1423289 AACCCTA
1 AACCCGA
*
1423296 AACCACTA
1 AACC-CGA
*
1423304 AACCCTA
1 AACCCGA
1423311 AA-CCGA
1 AACCCGA
*
1423317 AACCCTA
1 AACCCGA
1423324 AA-CCGATA
1 AACCCG--A
* *
1423332 AAACCTA
1 AACCCGA
*
1423339 AACACCGT
1 AAC-CCGA
*
1423347 AACCCTA
1 AACCCGA
*
1423354 ACACCCTA
1 A-ACCCGA
*
1423362 AACCCTA
1 AACCCGA
1423369 AACCCTGA
1 AACCC-GA
*
1423377 AACCTC-T
1 AACC-CGA
*
1423384 AACCCTA
1 AACCCGA
*
1423391 AACCCTAA
1 AACCC-GA
*
1423399 AACCC-T
1 AACCCGA
*
1423405 AACCCTA
1 AACCCGA
*
1423412 AACCCTA
1 AACCCGA
*
1423419 AACCCTA
1 AACCCGA
*
1423426 AACCCTA
1 AACCCGA
**
1423433 AACCCTT
1 AACCCGA
**
1423440 AACCCCT
1 AACCCGA
* *
1423447 AACACTA
1 AACCCGA
*
1423454 AACCCTA
1 AACCCGA
*
1423461 AACCCTACTA
1 AA-CC--CGA
*
1423471 AACCC-T
1 AACCCGA
*
1423477 AACCCTA
1 AACCCGA
*
1423484 CAACCCTA
1 -AACCCGA
*
1423492 AACCC-T
1 AACCCGA
*
1423498 AACCCTA
1 AACCCGA
*
1423505 AACCCTA
1 AACCCGA
*
1423512 AACCCTAA
1 AACCC-GA
*
1423520 AACCCTA
1 AACCCGA
*
1423527 CAACCCTAA
1 -AACCC-GA
*
1423536 AACCC-T
1 AACCCGA
*
1423542 AA-CCTA
1 AACCCGA
*
1423548 AACCCTA
1 AACCCGA
*
1423555 AACCCTA
1 AACCCGA
**
1423562 AACCTTA
1 AACCCGA
*
1423569 AA-CCTA
1 AACCCGA
1423575 AACCC-A
1 AACCCGA
*
1423581 AACCCTA
1 AACCCGA
1423588 AA-CC--
1 AACCCGA
*
1423592 AACCCTTA
1 AACCC-GA
*
1423600 AACCCTA
1 AACCCGA
**
1423607 CCTAACCCTCT
1 ---AACCC-GA
*
1423618 AACCCTA
1 AACCCGA
1423625 AATCTACCGCTA
1 AA-C--CCG--A
*
1423637 AACCCTCCCA
1 AA--C-CCGA
*
1423647 AACCCTA
1 AACCCGA
*
1423654 AACCGCTA
1 AACC-CGA
*
1423662 AACCCTA
1 AACCCGA
*
1423669 AACCCTA
1 AACCCGA
*
1423676 AA-CCTA
1 AACCCGA
*
1423682 AACCCTAA
1 AACCC-GA
*
1423690 AACCCTA
1 AACCCGA
*
1423697 AACCCCTAA
1 AA-CCC-GA
*
1423706 AACCC-T
1 AACCCGA
*
1423712 AACCC-T
1 AACCCGA
*
1423718 AACCCTA
1 AACCCGA
*
1423725 AACCCTA
1 AACCCGA
* *
1423732 AAACCTA
1 AACCCGA
1423739 AACCC-A
1 AACCCGA
*
1423745 AACCCTAA
1 AACCC-GA
*
1423753 AACCCTAA
1 AACCC-GA
*
1423761 AACCCTTA
1 AACCC-GA
*
1423769 AACCCTA
1 AACCCGA
*
1423776 ACACCCTA
1 A-ACCCGA
*
1423784 AACCCTA
1 AACCCGA
* *
1423791 TAAACCTA
1 -AACCCGA
*
1423799 AACCCTA
1 AACCCGA
*
1423806 AA-CCTA
1 AACCCGA
**
1423812 AACCTAA
1 AACCCGA
*
1423819 AACCCCATA
1 AA-CCC-GA
*
1423828 ACACCCTA
1 A-ACCCGA
*
1423836 AACCCTCTA
1 AA-CC-CGA
*
1423845 AACCCTA
1 AACCCGA
*
1423852 AACCCTTAA
1 AACCC--GA
*
1423861 AACCCTA
1 AACCCGA
*
1423868 AACCCTA
1 AACCCGA
* *
1423875 ACCCCTA
1 AACCCGA
*
1423882 TAACCCTA
1 -AACCCGA
*
1423890 AACCCTA
1 AACCCGA
*
1423897 AACCCTA
1 AACCCGA
**
1423904 AACCCTT
1 AACCCGA
1423911 AA-CC-A
1 AACCCGA
* *
1423916 ACCCTCAA
1 AACC-CGA
*
1423924 CAACCCTA
1 -AACCCGA
1423932 AA--C-A
1 AACCCGA
*
1423936 AACCC-T
1 AACCCGA
*
1423942 AA-CCTA
1 AACCCGA
*
1423948 AA-CC-T
1 AACCCGA
*
1423953 AACCCTTAA
1 AACCC--GA
**
1423962 AACCTTA
1 AACCCGA
*
1423969 AA-CCTA
1 AACCCGA
*
1423975 AACCCTAA
1 AACCC-GA
1423983 AACCCTGA
1 AACCC-GA
*
1423991 AA-CCTA
1 AACCCGA
**
1423997 AACCCTT
1 AACCCGA
1424004 AACCC-A
1 AACCCGA
* *
1424010 CACCCTA
1 AACCCGA
*
1424017 AACCCTTA
1 AACCC-GA
*
1424025 AACCCTA
1 AACCCGA
*
1424032 AACCCTA
1 AACCCGA
*
1424039 AACCACTA
1 AACC-CGA
*
1424047 AACCCTAAA
1 AACCC--GA
*
1424056 AACCCTA
1 AACCCGA
*
1424063 AA-CCTA
1 AACCCGA
*
1424069 AACCCTA
1 AACCCGA
*
1424076 ATACCCTA
1 A-ACCCGA
1424084 AACCTC-A
1 AACC-CGA
*
1424091 AACCCTA
1 AACCCGA
*
1424098 AACCCTA
1 AACCCGA
*
1424105 AACCCTTA
1 AACCC-GA
*
1424113 AACCCTTA
1 AACCC-GA
*
1424121 AACCCTA
1 AACCCGA
*
1424128 AACCCTA
1 AACCCGA
*
1424135 ACACCCTA
1 A-ACCCGA
1424143 AACCC--
1 AACCCGA
* *
1424148 ACCCCTAAA
1 AACCC--GA
*
1424157 AACCCCTAA
1 AA-CCC-GA
*
1424166 AACCCTA
1 AACCCGA
*
1424173 AACCCTA
1 AACCCGA
*
1424180 AACCCTA
1 AACCCGA
*
1424187 AACCC-T
1 AACCCGA
*
1424193 AACCCTA
1 AACCCGA
*
1424200 AACCCTA
1 AACCCGA
*
1424207 AACCCTA
1 AACCCGA
*
1424214 CAACCCTA
1 -AACCCGA
*
1424222 AACCCTA
1 AACCCGA
*
1424229 AACCC-T
1 AACCCGA
*
1424235 AACACCTA
1 AAC-CCGA
*
1424243 AA-CC-T
1 AACCCGA
*
1424248 AACCCTAA
1 AACCC-GA
*
1424256 AACCC-T
1 AACCCGA
**
1424262 AACCTAA
1 AACCCGA
*
1424269 AACCCTA
1 AACCCGA
*
1424276 AACCCTA
1 AACCCGA
*
1424283 AACCCCTA
1 AA-CCCGA
*
1424291 AACCCTA
1 AACCCGA
*
1424298 AACCCTTA
1 AACCC-GA
*
1424306 AACCCTTA
1 AACCC-GA
**
1424314 AACCCCT
1 AACCCGA
*
1424321 AACCCTA
1 AACCCGA
*
1424328 AACCCTA
1 AACCCGA
1424335 AACCC-A
1 AACCCGA
*
1424341 AACCCTA
1 AACCCGA
*
1424348 AACCCCTTA
1 AA-CCC-GA
1424357 AACCC-A
1 AACCCGA
*
1424363 AACCCTA
1 AACCCGA
*
1424370 AACCCTA
1 AACCCGA
*
1424377 AACCCTA
1 AACCCGA
*
1424384 AACCCTA
1 AACCCGA
*
1424391 AACCCTA
1 AACCCGA
**
1424398 AACCTAA
1 AACCCGA
**
1424405 AACCCTC
1 AACCCGA
*
1424412 AACCC-T
1 AACCCGA
*
1424418 AACCCTA
1 AACCCGA
*
1424425 AACCCTA
1 AACCCGA
*
1424432 AACCCTA
1 AACCCGA
*
1424439 AA-CCTA
1 AACCCGA
*
1424445 AACCCTA
1 AACCCGA
*
1424452 AA-CCTA
1 AACCCGA
*
1424458 AACCCTA
1 AACCCGA
*
1424465 AACCCTA
1 AACCCGA
*
1424472 AACCCTA
1 AACCCGA
*
1424479 AACCCTTAA
1 AACCC--GA
**
1424488 AACCTAAA
1 AACC-CGA
*
1424496 AACCCTA
1 AACCCGA
* *
1424503 AAACCTA
1 AACCCGA
*
1424510 AACCCTA
1 AACCCGA
*
1424517 AACCCTA
1 AACCCGA
*
1424524 AACCCTA
1 AACCCGA
1424531 AACCTC--
1 AACC-CGA
*
1424537 AACCCTA
1 AACCCGA
1424544 AACCC-A
1 AACCCGA
*
1424550 AACCCTA
1 AACCCGA
*
1424557 AACCCTA
1 AACCCGA
*
1424564 AACCCTA
1 AACCCGA
*
1424571 AACCCTAA
1 AACCC-GA
*
1424579 AACCC-T
1 AACCCGA
*
1424585 AACCC-T
1 AACCCGA
*
1424591 AA-CCTA
1 AACCCGA
*
1424597 AACCCTA
1 AACCCGA
*
1424604 AACCC-T
1 AACCCGA
*
1424610 AACCC-T
1 AACCCGA
*
1424616 AACCCTA
1 AACCCGA
*
1424623 AACCCTTA
1 AACCC-GA
1424631 AACCC-A
1 AACCCGA
1424637 AACCCTG-
1 AACCC-GA
*
1424644 AACCCTAA
1 AACCC-GA
*
1424652 CAACCTG-
1 -AACCCGA
1424659 AACCCTGA
1 AACCC-GA
1424667 AACCCGA
1 AACCCGA
*
1424674 ACCCCG-
1 AACCCGA
1424680 AACCCG-
1 AACCCGA
1424686 AACCCGA
1 AACCCGA
*
1424693 ACCCCGA
1 AACCCGA
*
1424700 ACCCCG-
1 AACCCGA
1424706 AACCCGA
1 AACCCGA
1424713 AACCCCGA
1 AA-CCCGA
*
1424721 ACCCCGA
1 AACCCGA
1424728 AACCCCGA
1 AA-CCCGA
*
1424736 ACCCCGA
1 AACCCGA
*
1424743 ACCCCGA
1 AACCCGA
1424750 ACACCCCCGA
1 A-A--CCCGA
*
1424760 ACCCCGA
1 AACCCGA
*
1424767 ACCCCGGA
1 AACCC-GA
*
1424775 ACCCCGA
1 AACCCGA
*
1424782 ACCCCGAA
1 AACCCG-A
1424790 AACCCCGA
1 AA-CCCGA
1424798 AACCCG-
1 AACCCGA
1424804 -ACCCG-
1 AACCCGA
*
1424809 ACCCCGA
1 AACCCGA
*
1424816 ACCCCGA
1 AACCCGA
*
1424823 ACCCCGA
1 AACCCGA
*
1424830 ACCCCGA
1 AACCCGA
*
1424837 CACCCCGA
1 -AACCCGA
*
1424845 ACCCCGA
1 AACCCGA
*
1424852 ACCCCG-
1 AACCCGA
1424858 AACCCGA
1 AACCCGA
**
1424865 CCCCCGGA
1 AACCC-GA
*
1424873 ACCCCGA
1 AACCCGA
1424880 AACCCCGA
1 AA-CCCGA
*
1424888 ACCCCG-
1 AACCCGA
1424894 AACCCGA
1 AACCCGA
*
1424901 ACCCCGA
1 AACCCGA
*
1424908 ACCCCGGA
1 AACCC-GA
*
1424916 ACCCCGA
1 AACCCGA
*
1424923 ACCCCGA
1 AACCCGA
1424930 AACCCCGA
1 AA-CCCGA
*
1424938 ACCCCGA
1 AACCCGA
*
1424945 ACCCCGA
1 AACCCGA
*
1424952 ACCCCG-
1 AACCCGA
*
1424958 ACCCCGA
1 AACCCGA
*
1424965 ACCCCGA
1 AACCCGA
*
1424972 ACCCCGA
1 AACCCGA
*
1424979 ACCCCG-
1 AACCCGA
1424985 AACCCGA
1 AACCCGA
1424992 AACCCCGA
1 AA-CCCGA
*
1425000 ACCCCGA
1 AACCCGA
*
1425007 ACCCCG-
1 AACCCGA
*
1425013 ACCCCG-
1 AACCCGA
1425019 AACCCGA
1 AACCCGA
1425026 AACCCCCG-
1 AA--CCCGA
1425034 AACCCGA
1 AACCCGA
*
1425041 ACCCCGA
1 AACCCGA
*
1425048 ACCCCGA
1 AACCCGA
*
1425055 ACCCCGA
1 AACCCGA
*
1425062 ACCCCGA
1 AACCCGA
1425069 AACCACCGA
1 AA-C-CCGA
1425078 AACCCCG-
1 AA-CCCGA
1425085 AACCCGA
1 AACCCGA
*
1425092 ACCCCG-
1 AACCCGA
*
1425098 ACCCCGA
1 AACCCGA
*
1425105 ACCCCGA
1 AACCCGA
*
1425112 ACCCCG-
1 AACCCGA
1425118 AACCCGA
1 AACCCGA
*
1425125 ACCCCGAA
1 AACCCG-A
1425133 AACCCCGA
1 AA-CCCGA
*
1425141 ACCCCGA
1 AACCCGA
*
1425148 ACCCCGAA
1 AACCCG-A
1425156 AACCCCG-
1 AA-CCCGA
1425163 AACCCGA
1 AACCCGA
*
1425170 ACCCCGA
1 AACCCGA
*
1425177 ACCCCGA
1 AACCCGA
*
1425184 ACCACCCCA
1 A--ACCCGA
*
1425193 ACCCCGA
1 AACCCGA
*
1425200 ACCCCGA
1 AACCCGA
*
1425207 ACCCCG-
1 AACCCGA
1425213 AACCCG-
1 AACCCGA
1425219 AACCCGA
1 AACCCGA
*
1425226 ACCCCGA
1 AACCCGA
*
1425233 ACCCCGA
1 AACCCGA
*
1425240 ACCCCGA
1 AACCCGA
*
1425247 ACCCCGA
1 AACCCGA
1425254 AACCCG-
1 AACCCGA
1425260 AACCCGACA
1 AACCCG--A
1425269 AACCCCGA
1 AA-CCCGA
*
1425277 ACCCCGA
1 AACCCGA
*
1425284 ACCCCGA
1 AACCCGA
*
1425291 ACCCCGA
1 AACCCGA
1425298 CAACCCCGA
1 -AA-CCCGA
*
1425307 ACCCCGAA
1 AACCCG-A
1425315 AACCCCG-
1 AA-CCCGA
1425322 AACCCGA
1 AACCCGA
*
1425329 ACCCCGA
1 AACCCGA
*
1425336 ACCCCGA
1 AACCCGA
*
1425343 ACCCCCGA
1 A-ACCCGA
*
1425351 ACCCCGA
1 AACCCGA
1425358 AA-CCG-
1 AACCCGA
*
1425363 ACCCCGA
1 AACCCGA
1425370 AACCCG-
1 AACCCGA
1425376 AACCCGA
1 AACCCGA
*
1425383 ACCCCGA
1 AACCCGA
*
1425390 ACCCCGA
1 AACCCGA
*
1425397 ACCCCG-
1 AACCCGA
*
1425403 AACCCCA
1 AACCCGA
*
1425410 AACCCCA
1 AACCCGA
* *
1425417 ATCCCCA
1 AACCCGA
*
1425424 ATACCCCA
1 A-ACCCGA
*
1425432 AACCCCA
1 AACCCGA
*
1425439 AACCCCA
1 AACCCGA
* *
1425446 ATCCCCA
1 AACCCGA
* **
1425453 ATCCCCC
1 AACCCGA
* *
1425460 ATCCCCA
1 AACCCGA
* *
1425467 ATCCCCA
1 AACCCGA
*
1425474 AACCCCA
1 AACCCGA
*
1425481 AACCCCA
1 AACCCGA
*
1425488 AACCCCA
1 AACCCGA
*
1425495 AACCCCA
1 AACCCGA
*
1425502 AACCCCA
1 AACCCGA
*
1425509 AACCCACA
1 AACCC-GA
*
1425517 AACCCCA
1 AACCCGA
*
1425524 AAACC-A
1 AACCCGA
1425530 AACCCG-
1 AACCCGA
1425536 AACCCGA
1 AACCCGA
*
1425543 AACCCCCA
1 AA-CCCGA
*
1425551 AACCCCAA
1 AA-CCCGA
*
1425559 AACCCCAA
1 AA-CCCGA
1425567 AACCC-A
1 AACCCGA
*
1425573 AACCCCAAA
1 AA-CCC-GA
*
1425582 AACCCAA
1 AACCCGA
*
1425589 AACCCCA
1 AACCCGA
*
1425596 AACCCCA
1 AACCCGA
1425603 AACCC-A
1 AACCCGA
*
1425609 AACCCCA
1 AACCCGA
1425616 AACCC-A
1 AACCCGA
*
1425622 AACCCCA
1 AACCCGA
*
1425629 AACCCTA
1 AACCCGA
*
1425636 AACCCCA
1 AACCCGA
*
1425643 AACCCTA
1 AACCCGA
*
1425650 AACCCCAA
1 AA-CCCGA
*
1425658 AACCCCA
1 AACCCGA
1425665 AACCCCGA
1 AA-CCCGA
*
1425673 ACCCCG-
1 AACCCGA
1425679 AACCCG-
1 AACCCGA
1425685 AACCCGA
1 AACCCGA
* *
1425692 ACCCCCA
1 AACCCGA
*
1425699 AACCCTA
1 AACCCGA
*
1425706 AACCCCA
1 AACCCGA
1425713 AACC
1 AACC
1425717 TCAAATCCTA
Statistics
Matches: 6437, Mismatches: 634, Indels: 1519
0.75 0.07 0.18
Matches are distributed among these distances:
4 21 0.00
5 84 0.01
6 842 0.13
7 3099 0.48
8 1484 0.23
9 626 0.10
10 220 0.03
11 48 0.01
12 11 0.00
13 2 0.00
ACGTcount: A:0.41, C:0.42, G:0.11, T:0.06
Consensus pattern (7 bp):
AACCCGA
Found at i:1420358 original size:40 final size:43
Alignment explanation
Indices: 1417879--1422673 Score: 2497
Period size: 46 Copynumber: 107.0 Consensus size: 43
1417869 TACCGAACGC
* * *
1417879 AACCCGAAAACCCGAATACCCG--ACCCCGCAACCCCGAAACCTGA
1 AACCCGAAAA-CCGAA-ACCCGAAAACCCG-AAACCCGAAACCCGA
*
1417923 AACCCGAAACCCGAAACCCGAATAACTCCGAAA-CCGAGAACGCCGA
1 AACCCGAAAACCGAAACCCGAA-AAC-CCGAAACCCGA-AAC-CCGA
* * *
1417969 AATCCCGATCACCCG-AACCTCGGGAAAACCCG-AA-CCG-AACCC-C
1 AA-CCCGA-AAACCGAAACC-C--GAAAACCCGAAACCCGAAACCCGA
* * *
1418012 AACCCG-AACCTTCGAAACCCG-AAACCCGACACCCGAAAATCCGA
1 AACCCGAAAAC--CGAAACCCGAAAACCCGAAACCCG-AAACCCGA
1418056 AACCCGAAAACCCGAAACCCG-AAACCCGAAAACCCGAAA-CCG-
1 AACCCGAAAA-CCGAAACCCGAAAACCCG-AAACCCGAAACCCGA
* *
1418098 AACCCGAAACCCGAAAACCCTGAATAACCCG-AACCCGACTACCCGGA
1 AACCCGAAAACCG-AAACCC-GAA-AACCCGAAACCCGA-AACCC-GA
* **
1418145 ATA-CCGAAACCCGGAAACTCCG-AAACCCGAAACCCTCAA-CCGAAA
1 A-ACCCGAAAACC-GAAAC-CCGAAAACCCGAAACCCGAAACCCG--A
* * *
1418190 AACCCGGAAACCCGAACCCCG-AAACCC-AAACCCGACA-CCG-
1 AACCC-GAAAACCGAAACCCGAAAACCCGAAACCCGAAACCCGA
* * *
1418230 AACCCTAAACCCGAAACCCCG-AAACCCGAAACCCGAAACCGGA
1 AACCCGAAAACCGAAA-CCCGAAAACCCGAAACCCGAAACCCGA
* * *
1418273 AACCTG--AACCGAAACCCGGAAACCCGAAACCCGAAATCCGA
1 AACCCGAAAACCGAAACCCGAAAACCCGAAACCCGAAACCCGA
*
1418314 AACCCG-AAACCCAAACCCAGGAAAAAAACCCGTAAA-CCGAAACCCGACGA
1 AACCCGAAAACCGAAACCC--G---AAAACCCG-AAACCCGAAA-CC--CGA
* *
1418364 AACCCGAAAACTCCGCACCCCG--AACCCGAAAACCCGAAA-CCGTAA
1 AACCCGAAAA--CCGAAACCCGAAAACCCG-AAACCCGAAACCCG--A
* * *
1418409 CAACCCGAAAACCCG-AACCC-ACCCACCCCAAAAACTCCGAAACCCGAA
1 -AACCCGAAAA-CCGAAACCCGA--AAACCC-GAAAC-CCGAAACCCG-A
*
1418457 AACCCGAGAACCCGAAACCCG-AAACCCGAAACCCGCGAATACCCGA
1 AACCCGA-AAACCGAAACCCGAAAACCCGAAA-CC-CGAA-ACCCGA
*
1418503 AACCCGAAACCCGAAACCCGAAAACCCCG-AACCCGAAA-CCGA
1 AACCCGAAAACCGAAACCCGAAAA-CCCGAAACCCGAAACCCGA
* *
1418545 CACCCGAAAACCCGAAACCCG-AACCCCGAAACCACGGAAA-CCGAA
1 AACCCGAAAA-CCGAAACCCGAAAACCCGAAACC-C-GAAACCCG-A
* *
1418590 AATCCCGAAAACCCGAAACCCGACAACCCGAAAACCCGAACCCCGA
1 AA-CCCGAAAA-CCGAAACCCGAAAACCCG-AAACCCGAAACCCGA
*
1418636 AATCCG-AAACCGAAACCCG--AACCCGTAAATCCCGAAACTCCGA
1 AACCCGAAAACCGAAACCCGAAAACCCG-AAA-CCCGAAAC-CCGA
* *
1418679 CCATCCTCGCAAAAACCCGAACCCCG-AAACCCGAAA-CCGAAACCCTGA
1 --AACC-CG--AAAA-CCGAAACCCGAAAACCCGAAACCCGAAACCC-GA
* *
1418727 AACCCG-AAACCGGAACACCC-TAAACCCGAAAACCCGAATACCC-T
1 AACCCGAAAACC-GAA-ACCCGAAAACCCG-AAACCCGAA-ACCCGA
* *
1418771 AA--TGAAACCCGGAAACCCG-AAACCCGAAACCCGAAACCTCGA
1 AACCCGAAAACC-GAAACCCGAAAACCCGAAACCCGAAACC-CGA
*
1418813 ACACCCG-AAACCGACACAACCGAAAACCCGAAAACCCGAAACCCGGA
1 A-ACCCGAAAACCGA-A-ACCCGAAAACCCG-AAACCCGAAACCC-GA
*
1418860 AACCCGAACAACCCG-AACCCG-AAACCCGAAACCCGAAACCATGA
1 AACCCGAA-AA-CCGAAACCCGAAAACCCGAAACCCGAAACC-CGA
* *
1418904 ACAACCGAAAAACCCGAAACCCGAATACCCGGAAACCCGAAACCCG-
1 A-ACCCG-AAAA-CCGAAACCCGAAAACCC-GAAACCCGAAACCCGA
* * *
1418950 AACCTGAAACCCGATAAACCCG-AAAGCCGAAA-CCGAAATCCCGA
1 AACCCGAAAACCG--AAACCCGAAAACCCGAAACCCGAAA-CCCGA
* *
1418994 AACCCGAAACCCG-AACCCG-CAACCCGAAA-CCGAAACCCGA
1 AACCCGAAAACCGAAACCCGAAAACCCGAAACCCGAAACCCGA
* *
1419034 AACCCGAAACCCG-AACCCG-AAACCCGAAACCCGAATAAACCGA
1 AACCCGAAAACCGAAACCCGAAAACCCGAAACCCG-A-AACCCGA
*
1419077 AACCCGAAAACCGAAGACCCGAAACTCCCG-AACCCGAAATCCCGA
1 AACCCGAAAACCGAA-ACCCGAAA-ACCCGAAACCCGAAA-CCCGA
*
1419122 AACCCGAAACCCGAAAACCCGAAAAACCCGAACTACCCGAAAACCCGA
1 AACCCGAAAACCG-AAACCCG-AAAACCCGAA--ACCCG-AAACCCGA
** * *
1419170 CAACCCGAAAAGCCGAAACCCGAACCCCCGAAACCCGCGGAAGCCGA
1 -AACCCGAAAA-CCGAAACCCGAAAACCCGAAA-CC-CGAAACCCGA
* *
1419217 AACCCGAAACCCTGAAACCCGAAAACCCGAAACCCGACACCGCGA
1 AACCCGAAAACC-GAAACCCGAAAACCCGAAACCCGAAACC-CGA
* *
1419262 AACCCGAAACCCGAAA-CCGGAAACCCG-AACCCGAAACCCGAA
1 AACCCGAAAACCGAAACCCGAAAACCCGAAACCCGAAACCCG-A
* *
1419304 AACCCCGAAACCCG-AACCCG--AACCCGGAACCCGAAACCCGA
1 AA-CCCGAAAACCGAAACCCGAAAACCCGAAACCCGAAACCCGA
** **
1419345 AA-AAGAACTCCGAAACCCG-AAA-CCGAAACCCGAAACCCGA
1 AACCCGAAAACCGAAACCCGAAAACCCGAAACCCGAAACCCGA
* *
1419385 AACCTCGAAAACCTCGAAACCGGAAATCCCGAAAAACCCGAAACCCGAA
1 AACC-CGAAAA-C-CGAAACCCGAAAACCCG--AAACCCGAAACCCG-A
* * * * * * * *
1419434 AACCCTAAACCCTGAGAAACCTAATACCCGAAACCCGCACCCCGC
1 AACCCGAAAACC-GA-AACCCGAAAACCCGAAACCCGAAACCCGA
* * * *
1419479 AACCCTAAACCCGACACCCG-AAACCCGAACCCCGAAACCCGGA
1 AACCCGAAAACCGAAACCCGAAAACCCGAAACCCGAAACCC-GA
* *
1419522 AACCCGAAAACCCGAATACCCTG-AAACCAG-AACCCGGAACCCCG-
1 AACCCGAAAA-CCGAA-ACCC-GAAAACCCGAAACCC-GAAACCCGA
* * ** * *
1419566 ACCCCGAAACCCGACCCCCTATAACCCGAAACAAACCCGAACACCCGA
1 AACCCGAAAACCGAAACCCGAAAACCCG----AAACCCGAA-ACCCGA
* * *
1419614 AACCCGGATAACCCGAAAACCCGAAACCCCTAAAACCCGAAA-CCGA
1 AACCC-GA-AAACCG-AAACCCGAAAACCC-GAAACCCGAAACCCGA
* * *
1419660 AACCCG-AACCCGACACCCGAATCACCCGAAA-CCGAAAAACCCGA
1 AACCCGAAAACCGAAACCCGAA-AACCCGAAACCCG--AAACCCGA
*
1419704 AACCCGAAAACTCGAAACCCG-AAACCCGAACCCCG-AACCCGGA
1 AACCCGAAAAC-CGAAACCCGAAAACCCGAAACCCGAAACCC-GA
*
1419747 AACCCG--AACCGTTAAAACCG--AACCCGCAAACCCCGAAACCCGAAA
1 AACCCGAAAACCG--AAACCCGAAAACCCG-AAA-CCCGAAACCCG--A
***
1419792 AACCTCGACCCCCGAAACCCG-AAACCCGAAAACCCGAAACCCGGA
1 AACC-CGAAAACCGAAACCCGAAAACCCG-AAACCCGAAACCC-GA
1419837 AACCCG-AAACCGAAA-CCGAAAA-CCGAAA-CCGAAACCCTGA
1 AACCCGAAAACCGAAACCCGAAAACCCGAAACCCGAAACCC-GA
*
1419877 AACCCGAAACCCGAAACCCTG-AAACCCGAAACCCG-AACCCGA
1 AACCCGAAAACCGAAACCC-GAAAACCCGAAACCCGAAACCCGA
* * * *
1419919 CACCCTAAACCTCTGTAAACCCGAACAACCCGAAACCCGACACCCGA
1 AACCCGAAAAC-C-G-AAACCCGAA-AACCCGAAACCCGAAACCCGA
* *
1419966 AA-CCGAAAAACCCGAAACCCG-CAACCCGAAAACCC-AAACCTGA
1 AACCCG-AAAA-CCGAAACCCGAAAACCCG-AAACCCGAAACCCGA
* *
1420009 AACCC--TAA--GAAACCTCGATAACCCGAAACCCGAAAACCCGA
1 AACCCGAAAACCGAAACC-CGAAAACCCGAAACCCG-AAACCCGA
* *
1420050 ACCTCCGGCGAAAACCGAAACCCG-AAACCCGAAA-CCGAAACCCTA
1 A--ACC--CGAAAACCGAAACCCGAAAACCCGAAACCCGAAACCCGA
*
1420095 ACTCCCG-AAACCGAAAACCCGAAAACCCGAAACCCG-AACCCGTGA
1 A-ACCCGAAAACCG-AAACCCGAAAACCCGAAACCCGAAACCC--GA
*
1420140 AACCCGAAACCCGGGGAAACCCGAAAACTCCGAACACCCGAAACCCGA
1 AACCCGAAAACC---GAAACCCGAAAAC-CCGAA-ACCCGAAACCCGA
* * * *
1420188 AACTCGAAAAACCCGGAAAAACCCGGAAACCTCGGACACCCGAAAACCCTA
1 AACCCG-AAAA-CC-G--AAACCCGAAAACC-C-GAAACCCG-AAACCCGA
*
1420239 AACCCGAAACCCCGAGAAACCCGTAAAACTCCG-AACCCGTAAA-CCGA
1 AACCCGAAA-ACC--GAAACCCG-AAAAC-CCGAAACCCG-AAACCCGA
1420286 AACCCGGAAAACCCGAAACCCG-AAA-CCGAAACCCG-AACCCGA
1 AACCC-GAAAA-CCGAAACCCGAAAACCCGAAACCCGAAACCCGA
*
1420328 AA-CCGAAAACCGAAA-CCGAAAACCCTAAACCCGAAA-CCGA
1 AACCCGAAAACCGAAACCCGAAAACCCGAAACCCGAAACCCGA
*
1420368 AACCCGAATAACCCGAAAACCGAAAAACCCG-AA-CCGAAAACCCCGA
1 AACCCGAA-AA-CCGAAACCCG-AAAACCCGAAACCCG-AAA-CCCGA
* *
1420414 AACCCGACGGAAACCCGTAACACCG-CAACCCGAAACCCGAAAACCCTGTA
1 AACCCGA---AAA-CCGAAAC-CCGAAAACCCGAAACCCG-AAACCC-G-A
*
1420464 AACCCGAAAACCCCGAAACCCG-AAACCCGCAACCCTGAAACTCCGA
1 AACCCGAAAA--CCGAAACCCGAAAACCCGAAACCC-GAAAC-CCGA
*
1420510 AACCCGATAACCCGAAACCCGGAAAAACCCGAAACCCGAAACCCGA
1 AACCCGA-AAACCGAAACCC-G-AAAACCCGAAACCCGAAACCCGA
*
1420556 AACCCGAAAAACCCGAAACCCGAACACCCTGATAACCCGAAACCCGA
1 AACCCG-AAAA-CCGAAACCCGAAAACCC-GA-AACCCGAAACCCGA
* *
1420603 AACCCGAATAACCCCGAAACCCTGAAAACCCGGAGAAACCG-AA--CGC
1 AACCCGAA-AA--CCGAAACCC-GAAAACCC-GA-AACCCGAAACCCGA
* ** *
1420649 AA-CCGAATCACCCGAAACCCGGAATCCCCGAAACCCTCG-CACCCGAA
1 AACCCGAA--AACCGAAACCC-GAAAACCCGAAA-CC-CGAAACCCG-A
*
1420696 AACCCCGAAACCCGAAACCCG-AAA-CCGACAACCCGATAA-CCGA
1 AA-CCCGAAAACCGAAACCCGAAAACCCGA-AACCCGA-AACCCGA
** ** *
1420739 AACTGGAACCCCGAAA-CCGGAAACCCG-AA-CCGAAA-CCGAA
1 AACCCGAAAACCGAAACCCGAAAACCCGAAACCCGAAACCCG-A
* *
1420779 AACCCGATAAACCCGAAACCCGTAAACCCGAAAACCCGAAACCCAA
1 AACCCGA-AAA-CCGAAACCCGAAAACCCG-AAACCCGAAACCCGA
* * * * *
1420825 AAACCG-AACCCTATAACCCGGAAACTCGAAACCCGAAACCCGA
1 AACCCGAAAACCGA-AACCCGAAAACCCGAAACCCGAAACCCGA
* *
1420868 AACCCTAAACCCGAAACCCGAAAACCCGAAACCCGGGAAACCCGCA
1 AACCCGAAAACCGAAACCCGAAAACCCGAAACCC--GAAACCCG-A
* * * *
1420914 AACCAGGATAACCCGAAACCCGTACACCC--AACCCG-AACCCGGA
1 AACC-CGA-AAACCGAAACCCGAAAACCCGAAACCCGAAACCC-GA
* *
1420957 TAA-CC-ACACCCG-AACCCG-AAA-CCGAATACCCCGAAATCCCGAA
1 -AACCCGAAAACCGAAACCCGAAAACCCGAA-A-CCCGAAA-CCCG-A
* * *
1421000 AACCCGAAACCCGAAAACCCGAATACCCGACACCTCCGAAACCCGA
1 AACCCGAAAACCG-AAACCCGAAAACCCGA-AAC-CCGAAACCCGA
* *
1421046 AACCCCGAAACCCGAAACCCG-AAACCC-TAACTCCAGAAAACTCCGA
1 AA-CCCGAAAACCGAAACCCGAAAACCCGAAAC-CC-G-AAAC-CCGA
** * *
1421092 ACACCCGAGAAACCCTAACCCGGAAACCCGTCAA-CCGAAAAACCCG-
1 A-ACCCGA-AAACCGAAACCCGAAAACCCG-AAACCCG--AAACCCGA
* * * *
1421138 AACCCGAAACCCGAAACCCGAAAA-CCTAAACACG-AACCTGAAA
1 AACCCGAAAACCGAAACCCGAAAACCCGAAACCCGAAACCCG--A
* * *
1421181 AACCCGACACCCGAAACCC-TAAACCCGAAACCCGAAACCCGTAAA
1 AACCCGAAAACCGAAACCCGAAAACCCGAAACCCGAAACCCG---A
* * * *
1421226 AACACGCCAAACTCCGAAAATACCGAACA-CCGAAACCCCTGAAACCCGA
1 AAC-C-CGAAA-ACCG-AAA-CCCGAAAACCCGAAA-CCC-GAAACCCGA
* *
1421275 AACCCG--AA-CGAAACCCGATAACCCGAAACCCGAATTACCAGA
1 AACCCGAAAACCGAAACCCGAAAACCCGAAACCCGAA--ACCCGA
*
1421317 AACCCGAAACCCGAAACCCG-AAACCCGCAATACCCGAAACCCGA
1 AACCCGAAAACCGAAACCCGAAAACCCG-AA-ACCCGAAACCCGA
* * * *
1421361 AACCCTAAAACCCGACACCCG-AAACCCTAATACCCGAAAACCGAA
1 AACCCGAAAA-CCGAAACCCGAAAACCCGAA-ACCCGAAACCCG-A
* *** ** *
1421406 AACCCGAAACCCGAAACTTTAAAATACCCGGCACCCTGACACCCGAA
1 AACCCGAAAACCGAAAC-CCGAAA-ACCCGAAACCC-GAAACCCG-A
* *
1421453 AACCCGGAAAACC-CAACCCG-AAACCAGAAAACCCCGAAACCGCGA
1 AACCC-GAAAACCGAAACCCGAAAACCCG-AAA-CCCGAAACC-CGA
* * * * *
1421498 AACCCGCCAACCCGAAACCCG-AACCCCGAAAACCGAAACCGGA
1 AACCCG-AAAACCGAAACCCGAAAACCCGAAACCCGAAACCCGA
1421541 TAACCCGAATGAAACCG-AACCCG-AAACCCGTCTTAAACCCGAAAACCCAGA
1 -AACCCG-A--AAACCGAAACCCGAAAACCCG----AAACCCG-AAACCC-GA
* *
1421592 AACCCGAAACCCGAAACCCTGAAAA-CAGAAACCCGAAATAACCCGA
1 AACCCGAAAACCGAAACCC-GAAAACCCGAAACCCG--A-AACCCGA
*
1421638 AACCCTTGTAAACCCGAAACCCGAAAACCCGGAAACCCGCAAAACCCGA
1 AACCC--G-AAAACCGAAACCCGAAAACCC-GAAACCCG--AAACCCGA
* * * *
1421687 AACCCGAAACCCCGACACCCG---ACCCGTAAATCTCCGATAAATCCGGC
1 AACCCGAAA-ACCGAAACCCGAAAACCCG-AAA-C-CCG--AAA-CCCGA
* * *
1421734 AACCTCGAAACCTCGGAACCCG-CAACCCGAAACCCGAAACCCGA
1 AACC-CGAAAAC-CGAAACCCGAAAACCCGAAACCCGAAACCCGA
*
1421778 CACCTCGAAAACCCTGGAAACCCGTAAAACCCTGAAATACTCCTGCAAACCCCGAAA
1 AACC-CGAAAA-CC--GAAACCCG-AAAACCC-G-AA-AC-CC-G-AAA-CCCG--A
** *
1421835 TAACCCG-AAACCGAAACCCG-CCACCCGAGTATACCCGTGAACCCCGA
1 -AACCCGAAAACCGAAACCCGAAAACCCGA--A-ACCC--GAAACCCGA
*
1421882 AACCCGAAATCCCGAAACCCG-AAACCCGAAACCCGAAACCCGA
1 AACCCGAAA-ACCGAAACCCGAAAACCCGAAACCCGAAACCCGA
* *
1421925 AACCTCGAAACCCGAAACCCG-AAACCAGATAACCCCGAAAACCCGGAAA
1 AACC-CGAAAACCGAAACCCGAAAACCCGA-AA-CCCG-AAACCC-G--A
* * * *
1421974 AACCCGGAACCCGAAACCCG-CAACCCTATAACCCTCGAAACCCGA
1 AACCCGAAAACCGAAACCCGAAAACCCGA-AA-CC-CGAAACCCGA
* * *
1422019 CACCCGAAAACCCGCAAACCCGGAAACCCGATGGAAACCCG-AACCGAAGA
1 AACCCGAAAA-CCG-AAACCCGAAAACCC----GAAACCCGAAACC--CGA
* *
1422069 AACCCGAAAACCCGAAA-CCGAAAACACCGATACCCGCAACCCGA
1 AACCCGAAAA-CCGAAACCCGAAAAC-CCGAAACCCGAAACCCGA
* * *
1422113 AACCGGAAACCCGAAACCCG-AAACCCGCAACCCG-AACCCGA
1 AACCCGAAAACCGAAACCCGAAAACCCGAAACCCGAAACCCGA
*
1422154 AACCCGAAACCCG-AACCCG-AAACCCGAAACCCCGAAACCCGGA
1 AACCCGAAAACCGAAACCCGAAAACCCGAAA-CCCGAAACCC-GA
* * *****
1422197 ATACCCGAAAACTCCGATAAACCCG-AAACCCGCACCCCTG-AGGGAAA
1 A-ACCCGAAAA--CCG--AAACCCGAAAACCCGAAACCC-GAAACCCGA
*
1422244 AACCCGAAAACCCGAATACCCCGAAAACCCGAAAACCCGACACCCGA
1 AACCCGAAAA-CCGAA-A-CCCGAAAACCCG-AAACCCGAAACCCGA
* *
1422291 AACCCGAAACCCGAAACCCGAAATCCCGAAACCCG-AACCCGA
1 AACCCGAAAACCGAAACCCGAAAACCCGAAACCCGAAACCCGA
* *
1422333 AACCCGGAAA-CG---CCCGGAAACCCG-AA-CCGAAACCCGA
1 AACCCGAAAACCGAAACCCGAAAACCCGAAACCCGAAACCCGA
* *
1422370 AACCTGAAACCCG-AACCCG-AAACTCCGAAACCCGAAACCCGACA
1 AACCCGAAAACCGAAACCCGAAAAC-CCGAAACCCGAAACCCG--A
* *
1422414 AACCCG-TAA---AAA-CCGAAAACCTCTAAACCCGAAACCCGA
1 AACCCGAAAACCGAAACCCGAAAACC-CGAAACCCGAAACCCGA
* *
1422453 AACCCGGAAACCAGAAA-CCTAAAACCCGAAA-CCGAAACCCGA
1 AACCCGAAAACC-GAAACCCGAAAACCCGAAACCCGAAACCCGA
*
1422495 AACCCGGAAATCCCGAAA--CG-AAACCCGAAACCCGTAAAAACCCG-
1 AACCC-GAAA-ACCGAAACCCGAAAACCCGAAACCCG---AAACCCGA
* * * *
1422539 AACCCGAAAA-CTACACCCTGAAAA----AAACCCTAAAACCAGGA
1 AACCCGAAAACCGAAACCC-GAAAACCCGAAACCC-GAAACC-CGA
1422580 AACCCGAAAACCCGGACAACCCGAATAACCCTGAAACCCGAAA-CCGAA
1 AACCCGAAAA-CC-GA-AACCCGAA-AACCC-GAAACCCGAAACCCG-A
* * * *
1422628 AACCCGAAACCCGCAACCCGTAAACCCTAAACCCGAAAACCCGA
1 AACCCGAAAACCGAAACCCGAAAACCCGAAACCCG-AAACCCGA
1422672 AA
1 AA
1422674 AAACCCTGAC
Statistics
Matches: 3818, Mismatches: 429, Indels: 1008
0.73 0.08 0.19
Matches are distributed among these distances:
36 3 0.00
37 18 0.00
38 23 0.01
39 67 0.02
40 183 0.05
41 254 0.07
42 320 0.08
43 443 0.12
44 444 0.12
45 431 0.11
46 459 0.12
47 390 0.10
48 362 0.09
49 177 0.05
50 144 0.04
51 56 0.01
52 11 0.00
53 15 0.00
54 3 0.00
55 6 0.00
56 3 0.00
57 3 0.00
58 3 0.00
ACGTcount: A:0.41, C:0.40, G:0.14, T:0.04
Consensus pattern (43 bp):
AACCCGAAAACCGAAACCCGAAAACCCGAAACCCGAAACCCGA
Found at i:1422538 original size:29 final size:29
Alignment explanation
Indices: 1418024--1422712 Score: 1484
Period size: 30 Copynumber: 155.2 Consensus size: 29
1418014 CCCGAACCTT
* *
1418024 CGAAACCCG--AAACCCGACACCCGAAAATC
1 CGAAACCCGAAAAACCCGA-AACCG-AAACC
1418053 CGAAACCCG-AAAACCCGAAACCCGAAACC
1 CGAAACCCGAAAAACCCGAAA-CCGAAACC
*
1418082 CGAAAACCCG--AAA-CCGAACCCGAAACC
1 CG-AAACCCGAAAAACCCGAAACCGAAACC
* * *
1418109 CGAAAACCCTGAATAACCCGAACCCGACTACC
1 CG-AAACCC-GAAAAACCCGAAACCGA-AACC
1418141 CGGAATA-CCG--AAACCCGGAAACTCCGAAACC
1 C-GAA-ACCCGAAAAACCC-GAAA--CCGAAACC
*
1418172 CGAAACCCTCAACCGAAAAACCCGGAAACCCGAACCC
1 CGAAA----C--CCGAAAAACCC-GAAA-CCGAAACC
*
1418209 CGAAACCC---AAACCCGACACCG-AACC
1 CGAAACCCGAAAAACCCGAAACCGAAACC
* *
1418234 CTAAACCCG-AAACCCCGAAACCCGAAACC
1 CGAAACCCGAAAAACCCGAAA-CCGAAACC
* *
1418263 CGAAA-CCG-GAAACCTG-AACCGAAACC
1 CGAAACCCGAAAAACCCGAAACCGAAACC
1418289 CGGAAACCCG--AAACCCGAAATCCGAAACC
1 C-GAAACCCGAAAAACCCGAAA-CCGAAACC
*
1418318 CGAAACCC---AAACCCAGGAAA--AAAACC
1 CGAAACCCGAAAAACCC--GAAACCGAAACC
1418344 CGTAAA-CCG--AAACCCG--A-CGAAACC
1 CG-AAACCCGAAAAACCCGAAACCGAAACC
* * *
1418368 CGAAAACTCCG--CACCCCGAACCCGAAAACC
1 CG-AAAC-CCGAAAAACCCGAAACCG-AAACC
*
1418398 CGAAA-CCGTAACAACCCGAAAACCCG-AACC
1 CGAAACCCG-AAAAACCCG-AAA-CCGAAACC
* *
1418428 C-ACCCACCCCAAAAACTCCGAAACCCGAAAACC
1 CGA--AACCCGAAAAAC-CCGAAA-CCG-AAACC
1418461 CGAGAACCCG--AAACCCGAAACCCGAAACCC
1 CGA-AACCCGAAAAACCCGAAA-CCGAAA-CC
1418491 GCGAATACCCG--AAACCCGAAACCCGAAACC
1 -CGAA-ACCCGAAAAACCCGAAA-CCGAAACC
*
1418521 CGAAAACCCCG---AACCCGAAACCGACACC
1 CG-AAA-CCCGAAAAACCCGAAACCGAAACC
*
1418549 CGAAAACCCG--AAACCCGAACCCCGAAACC
1 CG-AAACCCGAAAAACCCGAA-ACCGAAACC
*
1418578 ACGGAAA-CCGAAAATCCCGAAAACCCGAAACC
1 -C-GAAACCCGAAAAACCCGAA-A-CCGAAACC
* *
1418610 CGACAACCCG-AAAACCCGAACCCCGAAATC
1 CGA-AACCCGAAAAACCCGAA-ACCGAAACC
*
1418640 CGAAA-CCG--AAACCCGAACCCGTAAATCC
1 CGAAACCCGAAAAACCCGAAACCG-AAA-CC
** * *
1418668 CGAAACTCCGACCATCCTCGCAA---AAACC
1 CGAAAC-CCGAAAAACC-CGAAACCGAAACC
*
1418696 CGAACCCCG--AAACCCGAAACCGAAACC
1 CGAAACCCGAAAAACCCGAAACCGAAACC
* *
1418723 CTGAAACCCG--AAACCGGAACACCCTAAACC
1 C-GAAACCCGAAAAACCCGAA-A-CCGAAACC
* * *
1418753 CGAAAACCCG-AATACCC-TAA-TGAAACC
1 CG-AAACCCGAAAAACCCGAAACCGAAACC
1418780 CGGAAACCCG--AAACCCGAAACCCGAAACC
1 C-GAAACCCGAAAAACCCGAAA-CCGAAACC
1418809 TCGAACACCCG--AAA-CCGACACAACCGAAAACC
1 -CGAA-ACCCGAAAAACCCG--A-AACCG-AAACC
1418841 CGAAAACCCG--AAACCCGGAAACCCGAACAACC
1 CG-AAACCCGAAAAACCC-GAAA-CCG-A-AACC
1418873 CG-AACCCG-A-AACCCGAAACCCGAAACC
1 CGAAACCCGAAAAACCCGAAA-CCGAAACC
* *
1418900 ATGAACAACCGAAAAACCCGAAACCCGAATACC
1 -CGAA-ACCCGAAAAACCCGAAA-CCGAA-ACC
1418933 CGGAAACCCG--AAACCCG-AACCTGAAACC
1 C-GAAACCCGAAAAACCCGAAACC-GAAACC
*
1418961 CGATAAACCCG--AAAGCCGAAACCGAAATCC
1 CG--AAACCCGAAAAACCCGAAACCGAAA-CC
* *
1418991 CGAAACCCG--AAACCCGAACCCGCAACC
1 CGAAACCCGAAAAACCCGAAACCGAAACC
1419018 CGAAA-CCG--AAACCCGAAACCCGAAACC
1 CGAAACCCGAAAAACCCGAAA-CCGAAACC
*
1419045 CG-AACCCG--AAACCCGAAACCCGAATAAAC
1 CGAAACCCGAAAAACCCGAAA-CCG-A-AACC
1419074 CGAAACCCG-AAAA-CCGAAGACCCGAAACTCC
1 CGAAACCCGAAAAACCCGAA-A-CCGAAA--CC
*
1419105 CG-AACCCG-AAATCCCGAAACCCGAAACC
1 CGAAACCCGAAAAACCCGAAA-CCGAAACC
1419133 CGAAAACCCGAAAAACCCGAACTACCCGAAAACC
1 CG-AAACCCGAAAAACCCGAA--A-CCG-AAACC
* *
1419167 CGACAACCCG-AAAAGCCGAAACCCGAACCCC
1 CGA-AACCCGAAAAACCCGAAA-CCGAA-ACC
*** *
1419198 CGAAACCCGCGGAAGCCGAAACCCGAAACC
1 CGAAACCCGAAAAACCCGAAA-CCGAAACC
*
1419228 CTGAAACCCG-AAAACCCGAAACCCGACACC
1 C-GAAACCCGAAAAACCCGAAA-CCGAAACC
1419258 GCGAAACCCG--AAACCCGAAACCGGAAACC
1 -CGAAACCCGAAAAACCCGAAACC-GAAACC
1419287 CG-AACCCG--AAACCCGAAAACCCCGAAACC
1 CGAAACCCGAAAAACCCG-AAA--CCGAAACC
*
1419316 CG-AACCCG---AACCCGGAACCCGAAACC
1 CGAAACCCGAAAAACCC-GAAACCGAAACC
1419342 CGAAAAAGAACTCCG--AAACCCGAAACCGAAACC
1 CG----A-AAC-CCGAAAAACCCGAAACCGAAACC
1419375 CGAAACCCG--AAACCTCGAAAACCTCGAAACC
1 CGAAACCCGAAAAACC-CG-AAA-C-CGAAACC
*
1419406 GGAAATCCCGAAAAACCCGAAACCCGAAAACC
1 CGAAA-CCCGAAAAACCCGAAA-CCG-AAACC
* * *
1419438 CTAAACCCTGAGAAA-CCTAATACCCGAAACC
1 CGAAACCC-GAAAAACCCGAA-A-CCGAAACC
* * * * *
1419469 CGCACCCCG--CAACCCTAAACCCGACACC
1 CGAAACCCGAAAAACCCGAAA-CCGAAACC
*
1419497 CGAAACCCG--AACCCCGAAACCCGGAAACC
1 CGAAACCCGAAAAACCCGAAA-CC-GAAACC
*
1419526 CGAAAACCCG-AATACCCTGAAACC-AGAACC
1 CG-AAACCCGAAAAACCC-GAAACCGA-AACC
* * **
1419556 CGGAACCCCG---ACCCCGAAACCCGACCCC
1 C-GAAACCCGAAAAACCCGAAA-CCGAAACC
*
1419584 CTATAACCCGAAACAAACCCGAACACCCGAAACC
1 CGA-AACCCG-AA-AAACCCGAA-A-CCGAAACC
*
1419618 CGGATAACCCG-AAAACCCGAAACCCCTAAAACC
1 C-GA-AACCCGAAAAACCCGAAA--CC-GAAACC
*
1419651 CGAAA-CCGAAACCCGAACCCGACACCCGAATCACC
1 CGAAACCCGAAA----AACCCGA-AACCGAA--ACC
*
1419686 CGAAA-CCGAAAAACCCGAAACCCGAAAACT
1 CGAAACCCGAAAAACCCGAAA-CCG-AAACC
*
1419716 CGAAACCCG--AAACCCGAACCCCG-AACC
1 CGAAACCCGAAAAACCCGAA-ACCGAAACC
* *
1419743 CGGAAACCCGAACCGTTAAAACCGAACCCGCAAACCC
1 C-GAAACCCGAA-----AAACCCGAAACCG-AAA-CC
**
1419780 CGAAACCCGAAAAACCTCGACCCCCGAAACC
1 CGAAACCCGAAAAACC-CGA-AACCGAAACC
1419811 CGAAACCCG-AAAACCCGAAACCCGGAAACC
1 CGAAACCCGAAAAACCCGAAA-CC-GAAACC
1419841 CGAAA-CCG--AAA-CCGAAAACCGAAA-C
1 CGAAACCCGAAAAACCCG-AAACCGAAACC
1419866 CGAAACCCTG--AAACCCGAAACCCGAAACC
1 CGAAACCC-GAAAAACCCGAAA-CCGAAACC
* *
1419895 CTGAAACCCG--AAACCCGAACCCGACACC
1 C-GAAACCCGAAAAACCCGAAACCGAAACC
* *
1419923 CTAAACCTCTG-TAAACCCG-AA-C--AACC
1 CGAAACC-C-GAAAAACCCGAAACCGAAACC
*
1419949 CGAAACCCG--ACACCCGAAACCGAAAAACC
1 CGAAACCCGAAAAACCCGAAACCG--AAACC
* *
1419978 CGAAACCCG--CAACCCGAAAACCCAAACC
1 CGAAACCCGAAAAACCCG-AAACCGAAACC
* *
1420006 TGAAACCCTAAGAAACCTCGATAACCCGAAACC
1 CGAAACCCGAA-AAACC-CGA-AA-CCGAAACC
***
1420039 CGAAAACCCGAACCTCCGGCGAAAACCGAAACC
1 CG-AAACCCGAAAAACC--CG-AAACCGAAACC
* *
1420072 CGAAACCCG--AAA-CCGAAACCCTAACTCC
1 CGAAACCCGAAAAACCCGAAA-CCGAA-ACC
1420100 CGAAA-CCG-AAAACCCGAAAACCCGAAACC
1 CGAAACCCGAAAAACCCG-AAA-CCGAAACC
** *
1420129 CG-AACCCGTGAAACCCGAAACC----CGG
1 CGAAACCCGAAAAACCCGAAACCGAAAC-C
*
1420154 GGAAACCCG-AAAACTCCGAACACCCGAAACC
1 CGAAACCCGAAAAAC-CCGAA-A-CCGAAACC
*
1420185 CGAAACTCGAAAAACCCGGAAAAACCCGGAAACC
1 CGAAACCCGAAAAACCC-G--AAA-CC-GAAACC
* *
1420219 TCGGACACCCG-AAAACCCTAAACCCGAAACCC
1 -C-GAAACCCGAAAAACCCGAAA-CCGAAA-CC
* *
1420251 CGAGAAACCCGTAAAACTCCGAACCCGTAAA-C
1 C--GAAACCCGAAAAAC-CCGAAACCG-AAACC
*
1420283 CGAAACCCGGAAAACCCGAAACCCGAAA-C
1 CGAAACCCGAAAAACCCGAAA-CCGAAACC
*
1420312 CGAAACCCG---AACCCGAAACCGAAAAC
1 CGAAACCCGAAAAACCCGAAACCGAAACC
*
1420338 CGAAA-CCG-AAAACCCTAAACCCGAAA-C
1 CGAAACCCGAAAAACCCGAAA-CCGAAACC
*
1420365 CGAAACCCGAATAACCCGAAAACCGAAAAACC
1 CGAAACCCGAAAAACCCG-AAACCG--AAACC
*
1420397 CG-AA-CCGAAAACCCCGAAACCCGACGGAAACC
1 CGAAACCCGAAAAACCCGAAA--C--C-GAAACC
* *
1420429 CGTAACACCG--CAACCCGAAACCCGAAAACC
1 CGAAAC-CCGAAAAACCCGAAA-CCG-AAACC
*
1420459 CTGTAAACCCGAAAACCCCGAAACCCGAAACC
1 C-G-AAACCCGAAAAACCCGAAA-CCGAAACC
*
1420491 CGCAACCCTG--AAACTCCGAAACCCGATAACC
1 CGAAACCC-GAAAAAC-CCGAAA-CCGA-AACC
1420522 CGAAACCCGGAAAAACCCGAAACCCGAAACC
1 CGAAACCC-GAAAAACCCGAAA-CCGAAACC
1420553 CGAAACCCGAAAAACCCGAAACCCGAACACC
1 CGAAACCCGAAAAACCCGAAA-CCGAA-ACC
1420584 CTGATAACCCG--AAACCCGAAACCCGAATAACCC
1 C-GA-AACCCGAAAAACCCGAAA-CCG-A-AA-CC
*
1420617 CGAAACCCTG-AAAACCCGGAGAAACCGAACGCAAC
1 CGAAACCC-GAAAAACCC---GAAACCGAA---ACC
*
1420652 CGAATCACCCG--AAACCCGGAATCCCCGAAACCC
1 CGAA--ACCCGAAAAACCC-GAA--ACCGAAA-CC
* *
1420685 TCG-CACCCGAAAACCCCGAAACCCGAAACC
1 -CGAAACCCGAAAAACCCGAAA-CCGAAACC
* *
1420715 CGAAA-CCG-ACAACCCGATAACCGAAACT
1 CGAAACCCGAAAAACCCGA-AACCGAAACC
* *
1420743 GGAACCCCGAAACCGGAAACCCG-AACCGAAA-C
1 CGAAACCCG-AA----AAACCCGAAACCGAAACC
*
1420775 CGAAAACCCGATAAACCCGAAACCCGTAAACC
1 CG-AAACCCGAAAAACCCGAAA-CCG-AAACC
*
1420807 CGAAAACCCG--AAACCCAAAAACCG-AACC
1 CG-AAACCCGAAAAACCC-GAAACCGAAACC
* * *
1420835 CTATAACCCG-GAAACTCGAAACCCGAAACC
1 CGA-AACCCGAAAAACCCGAAA-CCGAAACC
*
1420865 CGAAACCC--TAAACCCGAAACCCGAAAACC
1 CGAAACCCGAAAAACCCGAAA-CCG-AAACC
**
1420894 CGAAACCCGGGAAACCCGCAAACCAGGATAACC
1 CGAAACCCGAAAAACCCG-AAACC--GA-AACC
* *
1420927 CGAAACCCGTACACCCAACCCGAACCCGGATAA-C
1 CGAAACCCG-A-A--AAACCCGAAACC-GA-AACC
*
1420961 C-ACACCCG---AACCCGAAACCGAATACCC
1 CGAAACCCGAAAAACCCGAAACCGAA-A-CC
1420988 CGAAATCCCG-AAAACCCGAAACCCGAAAACC
1 CGAAA-CCCGAAAAACCCGAAA-CCG-AAACC
1421019 CGAATACCCGACACCTCCGAAACCCGAAACCCCGAAACC
1 CGAA-ACCCGA-A------AAACCCGAAA--CCGAAACC
* *
1421058 CGAAACCCG--AAACCCTAACTCCAGAAAACTC
1 CGAAACCCGAAAAACCCGAA-ACC-GAAA-C-C
* * *
1421089 CGAACACCCGAGAAACCCTAACCCGGAAACC
1 CGAA-ACCCGAAAAACCCGAAACCG-AAACC
* *
1421120 CGTCAA-CCGAAAAACCCGAACCCGAAACC
1 CG-AAACCCGAAAAACCCGAAACCGAAACC
*
1421149 CGAAACCCG-AAAA-CCTAAACACG-AACC
1 CGAAACCCGAAAAACCCGAAAC-CGAAACC
* * *
1421176 TGAAAAACCCG--ACACCCGAAACCCTAAACC
1 CG--AAACCCGAAAAACCCGAAA-CCGAAACC
1421206 CGAAACCCG--AAACCCGTAAA---AACACGC
1 CGAAACCCGAAAAACCCG-AAACCGAA-AC-C
1421233 C-AAACTCCGAAAATA-CCGAACACCGAAACCC
1 CGAAAC-CCGAAAA-ACCCGAA-ACCGAAA-CC
*
1421264 CTGAAACCCG-AAACCCGAACGAAACCCGATAACC
1 C-GAAACCCGAAAAACC---CGAAA-CCGA-AACC
** *
1421298 CGAAACCCGAATTACCAGAAACCCGAAACC
1 CGAAACCCGAAAAACCCGAAA-CCGAAACC
*
1421328 CGAAACCCG--AAACCCGCAATACCCGAAACC
1 CGAAACCCGAAAAACCCG-AA-ACCG-AAACC
* *
1421358 CGAAACCC-TAAAACCCGACACCCGAAACC
1 CGAAACCCGAAAAACCCGA-AACCGAAACC
*
1421387 CTAATACCCG-AAAA-CCGAAAACCCGAAACC
1 CGAA-ACCCGAAAAACCCG-AAA-CCGAAACC
*** * * *
1421417 CGAAACTTTAAAATACCCGGCACCCTGACACC
1 CGAAACCCGAAAA-ACCC-GAAACC-GAAACC
* *
1421449 CGAAAACCCGGAAAACCC-AACCCGAAACC
1 CG-AAACCCGAAAAACCCGAAACCGAAACC
* *
1421478 AGAAAACCCCG--AAACCGCGAAACCCGCCAACC
1 CG-AAA-CCCGAAAAACC-CGAAA-CCG-AAACC
*
1421510 CGAAACCCG--AACCCCGAAAACCGAAACC
1 CGAAACCCGAAAAACCCG-AAACCGAAACC
* *
1421538 GGATAACCCGAATGAAA-CCGAACCCGAAACC
1 CGA-AACCCGAA--AAACCCGAAACCGAAACC
1421569 CGTCTTAAACCCG-AAAACCCAGAAACCCGAAACC
1 CG----AAACCCGAAAAACCC-GAAA-CCGAAACC
*
1421603 CGAAACCCTG-AAAA-CAGAAACCCGAAATAACC
1 CGAAACCC-GAAAAACCCGAAA-CCG--A-AACC
*
1421635 CGAAACCCTTG-TAAACCCGAAACCCGAAAACC
1 CGAAACCC--GAAAAACCCGAAA-CCG-AAACC
*
1421667 CGGAAACCCGCAAAACCCGAAACCCGAAACCC
1 C-GAAACCCGAAAAACCCGAAA-CCGAAA-CC
*
1421699 CGACACCCG----ACCCGTAAATCTCCGATAAATCC
1 CGAAACCCGAAAAACCCG-AAA---CCG--AAA-CC
* * * *
1421731 GGCAACCTCG--AAACCTCGGAACCCGCAACC
1 CGAAACC-CGAAAAACC-C-GAAACCGAAACC
*
1421761 CGAAACCCG--AAACCCGACACCTCGAAAACC
1 CGAAACCCGAAAAACCCGA-AAC-CG-AAACC
* * **
1421791 CTGGAAACCCGTAAAACCCTGAAA--TACTCC
1 C--GAAACCCGAAAAACCC-GAAACCGAAACC
*
1421821 TGCAAACCCCGAAATAACCCGAAACCGAAACC
1 CG-AAA-CCCGAAA-AACCCGAAACCGAAACC
** * * *
1421853 CGCCACCCGAGTATACCCGTGAACCCCGAAACC
1 CGAAACCCGA-AAAACCC--GAA-ACCGAAACC
1421886 CGAAATCCCG--AAACCCGAAACCCGAAACC
1 CGAAA-CCCGAAAAACCCGAAA-CCGAAACC
1421915 CGAAACCCG--AAACCTCGAAACCCGAAACC
1 CGAAACCCGAAAAACC-CGAAA-CCGAAACC
* * *
1421944 CGAAACCAGATAACCCCGAAAACCCGGAAAAACC
1 CGAAACCCGAAAAACCCG-AAA-CC-G--AAACC
* * *
1421978 CGGAACCCG--AAACCCGCAACCCTATAACCC
1 CGAAACCCGAAAAACCCG-AAACCGA-AA-CC
*
1422008 TCGAAACCCG--ACACCCGAAAACCCGCAAACC
1 -CGAAACCCGAAAAACCCG-AAA-CCG-AAACC
*
1422039 CGGAAACCCGATGGAAACCCG-AACCG-AA--
1 C-GAAACCCGA--AAAACCCGAAACCGAAACC
1422067 -GAAACCCG-AAAACCCGAAACCGAAAACAC
1 CGAAACCCGAAAAACCCGAAACCG-AAAC-C
* *
1422096 CGATACCCG--CAACCCGAAACCGGAAACC
1 CGAAACCCGAAAAACCCGAAACC-GAAACC
*
1422124 CGAAACCCG--AAACCCGCAACCCG-AACC
1 CGAAACCCGAAAAACCCG-AAACCGAAACC
1422151 CGAAACCCGAAACCCGAACCCGAAACCCGAAACCC
1 CGAAACCCGAAA----AACCCGAAA-CCGAAA-CC
* *
1422186 CGAAACCCGGAATACCCGAAAACTCCGATAAACC
1 CGAAACCCGAAAAACCCG-AAA--CCG--AAACC
* * *****
1422220 CGAAACCCG--CACCCCTGAGGGAAAAACC
1 CGAAACCCGAAAAACCC-GAAACCGAAACC
* *
1422248 CGAAAACCCGAATACCCCGAAAACCCGAAAACC
1 CG-AAACCCGAAAAACCCG-AAA-CCG-AAACC
*
1422281 CGACACCCG--AAACCCGAAACCCGAAACC
1 CGAAACCCGAAAAACCCGAAA-CCGAAACC
*
1422309 CGAAATCCCG--AAACCCGAACCCGAAACC
1 CGAAA-CCCGAAAAACCCGAAACCGAAACC
*
1422337 CGGAAACGCCCG-GAAACCCG-AACCGAAACC
1 C-GAAA--CCCGAAAAACCCGAAACCGAAACC
*
1422367 CGAAACCTGAAACCCGAACCCGAAACTCCGAAACC
1 CGAAACCCGAAA----AACCCGAAA--CCGAAACC
*
1422402 CGAAACCCGACAAACCCGTAAAAACCGAAAACC
1 CGAAACCCGAAAAACCCG---AAACCG-AAACC
*
1422435 TCTAAACCCG--AAACCCGAAACCCGGAAACC
1 -CGAAACCCGAAAAACCCGAAA-CC-GAAACC
* *
1422465 AGAAA-CC-TAAAACCCGAAACCGAAACC
1 CGAAACCCGAAAAACCCGAAACCGAAACC
* *
1422492 CGAAACCCGGAAATCCCGAAA-CGAAACC
1 CGAAACCCGAAAAACCCGAAACCGAAACC
* *
1422520 CGAAACCCGTAAAAACCCGAACCCGAAA-A
1 CGAAACCCG-AAAAACCCGAAACCGAAACC
* * *
1422549 CTACACCCTGAAAAAAACCCTAAAACCAGGAAACC
1 CGAAACCC-G--AAAAACCC-GAAACC--GAAACC
* *
1422584 CGAAAACCCGGACAACCCGAATAACCCTGAAACC
1 CG-AAACCCGAAAAACCCG-A-AA-CC-GAAACC
*
1422618 CGAAA-CCG-AAAACCCGAAACCCGCAACC
1 CGAAACCCGAAAAACCCGAAA-CCGAAACC
*
1422646 CGTAAACCC--TAAACCCGAAAACCCGAAAAAACC
1 CG-AAACCCGAAAAACCCG-AAA-CCG---AAACC
*
1422679 CTGACACCCG--AAACCCG-AACCGAAACC
1 C-GAAACCCGAAAAACCCGAAACCGAAACC
*
1422706 CTAAACC
1 CGAAACC
1422713 TAAAACCTAA
Statistics
Matches: 3722, Mismatches: 385, Indels: 1109
0.71 0.07 0.21
Matches are distributed among these distances:
23 14 0.00
24 24 0.01
25 41 0.01
26 136 0.04
27 264 0.07
28 435 0.12
29 580 0.16
30 590 0.16
31 527 0.14
32 376 0.10
33 316 0.08
34 182 0.05
35 132 0.04
36 40 0.01
37 26 0.01
38 16 0.00
39 19 0.01
40 4 0.00
ACGTcount: A:0.41, C:0.40, G:0.14, T:0.04
Consensus pattern (29 bp):
CGAAACCCGAAAAACCCGAAACCGAAACC
Found at i:1422543 original size:141 final size:132
Alignment explanation
Indices: 1418024--1422703 Score: 985
Period size: 139 Copynumber: 33.5 Consensus size: 132
1418014 CCCGAACCTT
* *
1418024 CGAAACCCGAAACCCGACACCCGAAAATCCGAAACCCG-AAAACCCGAAACCCGAAACCCGA-A-
1 CGAAACCCGAAACCCGA-AACCG-AAACCCGAAACCCGAAAAACCCG-AACCCGAAACCCGACAC
**** * * * *
1418086 --AACCCGAAA-CC--GAACCCGAAACCCGAAAACCCTGAATAACCCG-AACCCGACTACCCGGA
63 CGAAAAAAAAACCCTAAAACCCGAAACCCG-AAACCC-GGA-AACCCGAAACCTGA-AACCC-GA
1418145 ATACCGAAACC
123 A-ACCGAAACC
** *
1418156 CGGAAACTCCGAAACCCGAAACCCTCAA-CCGAAAAACCCG-GAAACCCGAACCCCGAAACCC-A
1 C-GAAAC-CCGAAACCCGAAA-CCGAAACCCG--AAACCCGAAAAACCCGAA-CCCGAAACCCGA
* * *** * *
1418218 AACCCG-ACACCGAACCCT-AAACCCGAAACCCCGAAACCC-GAAACCCGAAACCGGAAACCTG-
60 CA-CCGAAAAAAAAACCCTAAAACCCGAAA-CCCGAAACCCGGAAACCCGAAACCTGAAACCCGA
1418279 AACCGAAACC
123 AACCGAAACC
** *
1418289 CGGAAACCCGAAACCCGAAATCCGAAACCCGAAACCC---AAACCCAGGAA--AAAAACCCGTAA
1 C-GAAACCCGAAACCCGAAA-CCGAAACCCGAAACCCGAAAAACCC--GAACCCGAAACCCG-AC
** * * * * *
1418349 ACCGAAACCCGACGAAACCCGAAAACTCCGCACCCCG-AACCCGAAAACCCGAAACCGTAACAAC
61 ACCGAAA----AAAAAACCCTAAAAC-CCGAAACCCGAAACCCGGAAACCCGAAACC-TGA-AAC
*
1418413 CCGAAAACCCGAACCC
119 CCG-AAA-CCGAAACC
** * *
1418429 ACCCACCCCAAAAACTCCGAAACCCGAAAACCCGAGAACCCG--AAACCCGAAACCCGAAACCCG
1 -CGAAACCC-GAAAC-CCGAAA-CCG-AAACCCGA-AACCCGAAAAACCCG-AACCCGAAACCCG
*** * * *
1418492 ----CGAATACCCGAAACCC-GAAACCCGAAACCCGAAAACCCCG-AACCCGAAACC-GACACCC
59 ACACCGAA-A-AAAAAACCCTAAAACCCGAAACCCG-AAACCCGGAAACCCGAAACCTGAAACCC
1418550 GAAAACCCGAAACC
121 G-AAA-CCGAAACC
*
1418564 CGAACCCCGAAACCACGGAAACCGAAAATCCCGAAAACCCG--AAACCCGACAACCCGAAAACCC
1 CGAAACCCGAAACC-C-GAAACCG-AAA-CCCG-AAACCCGAAAAACCCG--AACCCG-AAACCC
* *** * *
1418627 GAACCCCGAAATCCGAAA-CC-GAAACCCG-AACCCGTAAATCCC-GAAACTCCGACCATCCTCG
58 G-ACACCGAAA-AAAAAACCCTAAAACCCGAAACCCG-AAA-CCCGGAAAC-CCGA--AACCT-G
* *
1418688 CAAA----AACCCGAACCC
115 -AAACCCGAAACCGAAACC
* * * *
1418703 CGAAACCCGAAA-CCGAAACCCTGAAACCCGAAA-CCGGAACACCCTAAACCCGAAAACCCGAAT
1 CGAAACCCGAAACCCGAAA-CC-GAAACCCGAAACCCGAAAAACCC-GAACCCG-AAACCCG-AC
** ** ** *
1418766 ACC-CTAATGAAACCCGGAAACCCGAAACCCGAAACCC-GAAACCTCGAACACCCGAAA-CCGAC
61 ACCGAAAAAAAAACCCTAAAACCCGAAACCCGAAACCCGGAAACC-CGAA-ACCTGAAACCCG--
1418828 ACAACCGAAAACC
122 A-AACCG-AAACC
*
1418841 CGAAAACCCGAAACCCGGAAACCCGAACAACCCG-AACCCG--AAACCCGAAACCCGAAACCATG
1 CG-AAACCCGAAACCC-GAAA-CCG-A-AACCCGAAACCCGAAAAACCCG-AACCCGAAACC-CG
*
1418903 AACAACCG----AAAAACCC-GAAACCCGAATACCCGGAAACCC-GAAACCCG-AACCTGAAACC
59 -AC-ACCGAAAAAAAAACCCTAAAACCCGAA-ACCC-GAAACCCGGAAACCCGAAACCTGAAACC
*
1418961 CGATAAACCCGAAAGC
120 CG--AAA-CCGAAACC
* * *
1418977 CGAAA-CCGAAATCCCGAAACCCGAAACCCG-AACCCG--CAACCCGAAACCGAAACCCGAAACC
1 CGAAACCCGAAA-CCCGAAA-CCGAAACCCGAAACCCGAAAAACCCGAACCCGAAACCCGACA-C
**** * *
1419038 CGAAACCCGAACCC-GAAACCCGAAACCCGAATAAACC-GAAACCCGAAAACC-GAAGACCCGAA
63 CGAAAAAAAAACCCTAAAACCCGAAACCCG-A-AACCCGGAAACCCG-AAACCTGAA-ACCCGAA
*
1419100 A-C---TCC
124 ACCGAAACC
1419105 CG-AACCCGAAATCCCGAAACCCGAAACCCGAAAACCCGAAAAACCCGAACTACCCGAAAACCCG
1 CGAAACCCGAAA-CCCGAAA-CCGAAACCCG-AAACCCGAAAAACCCG-A--ACCCG-AAACCCG
* * * * * *
1419169 ACAACCCG-----AAAAGCC-GAAACCCGAACCCCCGAAACCCGCGGAAGCCGAAACCCGAAACC
59 AC-A-CCGAAAAAAAAACCCTAAAACCCGAA-ACCCGAAACCCG-GAAACCCGAAACCTGAAACC
1419228 CTGAAACCCGAAAACC
120 C-GAAA-CCG-AAACC
* *
1419244 CGAAACCCGACACCGCGAAACCCGAAACCCGAAA-CCG-GAAACCCGAACCCGAAACCCGAAAAC
1 CGAAACCCGAAACC-CGAAA-CCGAAACCCGAAACCCGAAAAACCCGAACCCGAAACCCG---AC
* **** * * ** *
1419307 CCCGAAACCCGAACCC--GAACCCGGAACCCGAAACCC-GAAA-AAG-AACTCCGAAACCCGAAA
61 ACCGAAAAAAAAACCCTAAAACCCGAAACCCGAAACCCGGAAACCCGAAAC-CTGAAACCCGAAA
1419367 CCGAAACC
125 CCGAAACC
* *
1419375 CGAAACCCGAAACCTCGAAAACCTCGAAACCGGAAATCCCGAAAAACCCGAAACCCGAAAACCCT
1 CGAAACCCGAAACC-CG-AAA-C-CGAAACCCGAAA-CCCGAAAAACCCG-AACCCG-AAACCCG
* *** * * * * * * * *
1419440 AAACC--CTGAGAAA-CCTAATACCCGAAACCCG-CACCCCGCAACCCTAAACCCGACACCCGAA
59 ACACCGAAAAAAAAACCCTAAAACCCGAAACCCGAAACCCGGAAACCCGAAACCTGAAACCCGAA
*
1419501 ACCCGAACCC
124 A-CCGAAACC
* * *
1419511 CGAAACCCGGAAACCCG--A---AAACCCGAATACCCTG--AAACCAGAACCCGGAACCCCGACC
1 CGAAACCC-GAAACCCGAAACCGAAACCCGAA-ACCC-GAAAAACCCGAACCC-GAAACCCGACA
*** ** * *
1419569 CCGAAACCCGACCCCCTATAACCCGAAA--C-AAACCC-GAACACCCGAAACCCGGATAACCCGA
62 CCGAAA-AAAAAACCCTAAAACCCGAAACCCGAAACCCGGAA-ACCCGAAA-CCTGA-AACCCG-
1419630 AAACCCGAAACCC
122 AAA-CCGAAA-CC
* * ** * *
1419643 CTAAAACCCGAAA-CCGAAACCCG-AACCCGACACCCGAATCACCCGAAACCGAAAAACCCGAAA
1 C-GAAACCCGAAACCCGAAA-CCGAAACCCGAAACCCGAAAAACCCGAACCCG--AAACCCGACA
** * * * *
1419706 CCCGAAAACTCGAAACCC-GAAACCCGAACCCCG-AACCCGGAAACCCG-AACCGTTAAAACCGA
62 -CCGAAAA--AAAAACCCTAAAACCCGAAACCCGAAACCCGGAAACCCGAAACC-TGAAACCCGA
*
1419768 ACCCGCAAACCC
123 AACCG-AAA-CC
**
1419780 CGAAACCCGAAAAACCTCGACCCCCGAAACCCGAAACCCG-AAAACCCGAAACCCGGAAACCCGA
1 CGAAACCCG--AAACC-CGA-AACCGAAACCCGAAACCCGAAAAACCCG-AACCC-GAAACCCGA
* ** *
1419844 AACCGAAACCGAAAA-CC-GAAA-CCGAAACCCTGAAACCC-GAAACCCGAAACCCTGAAACCCG
60 CACCGAAA-AAAAAACCCTAAAACCCGAAACCC-GAAACCCGGAAACCCGAAA-CCTGAAACCCG
1419905 AAACCCG-AACC
122 AAA-CCGAAACC
* *
1419916 CGACACCCTAAACCTCTGTAAACCCGAACAACCCGAAACCCGACACCCGAAA-CCGAAAAACCCG
1 CGAAACCCGAAACC-C-G-AAA-CCG-A-AACCCGAAACCCGA-A----AAACCCG---AACCCG
** *
1419980 AAACCCG-CAACCCGAAAACCCAAA-CCTGAAACCCTAAGAAACCTCGATAACCC-GAAACCCGA
52 AAACCCGAC-A-CCGAAAA-AAAAACCCTAAAACCC---GAAACC-CGA-AACCCGGAAACCCG-
* *
1420042 AAACCCGAACCTCCGGCGAAAACCGAAACC
108 AAACCTGAA--ACC--CG-AAACCGAAACC
* *
1420072 CGAAACCCGAAA-CCGAAACCCTAACTCCCGAAA-CCG-AAAACCCGAAAACCCGAAACCCGA-A
1 CGAAACCCGAAACCCGAAA-CCGAA-ACCCGAAACCCGAAAAACCCG--AACCCGAAACCCGACA
** * * *
1420133 CCCG----TGAAACCC-GAAACCCGGGGAAACCCGAAAACTCC-GAACACCCGAAACCCGAAACT
62 -CCGAAAAAAAAACCCTAAAACCC---GAAACCCG-AAAC-CCGGAA-ACCCGAAACCTGAAACC
1420192 CGAAAAACCCGGAAAAACC
120 CG--AAA-CC-G--AAACC
* * *
1420211 CGGAAACCTCGGACACCCGAAAACCCTAAACCCGAAACCCCGAGAAACCCGTAAAACTCCG-AAC
1 C-GAAACC-C-GAAACCCG-AAA-CCGAAACCCGAAA-CCCGAAAAACCCG---AAC-CCGAAAC
* ** *
1420275 CCGTAAACCGAAACCCGGAAAACCC-GAAACCCGAAA-CCGAAACCC-G-AACCCGAAACC-GAA
56 CCG-ACACCGAAA---AAAAAACCCTAAAACCCGAAACCCGAAACCCGGAAACCCGAAACCTGAA
*
1420335 AACCGAAACCGAAAACC
117 ACCCGAAACCG-AAACC
* * *
1420352 CTAAACCCGAAA-CCGAAACCCGAATAACCCGAAAACCGAAAAACCCGAA-CCGAAAACCCCGAA
1 CGAAACCCGAAACCCGAAA-CCG-A-AACCCGAAACCCGAAAAACCCGAACCCG-AAA-CCCGAC
*** * * * *
1420415 ACCCG--ACGGAAACCCGTAACA-CCGCAACCCGAAACCCGAAAACCCTGTAAACCCGAAAACCC
61 A-CCGAAAAAAAAACCC-TAAAACCCGAAACCCGAAACCCGGAAACCC-G-AAACCTG-AAA-CC
1420477 CGAAACCCGAAACC
120 CGAAA-CCGAAACC
*
1420491 CGCAACCCTGAAACTCCGAAACCCGATAACCCGAAACCCGGAAAAACCCGAAACCCGAAACCCGA
1 CGAAACCC-GAAAC-CCGAAA-CCGA-AACCCGAAACCC-GAAAAACCCG-AACCCGAAACCCGA
* * * * *
1420556 AACCCGAAAAACCCGAAACCCGAACACCCTGATAACCCGAAACCC-GAAACCCGAATAACCCCGA
60 CA-CCGAAAAA---AAAACCCTAAAACCC-GA-AACCCGAAACCCGGAAACCCG-A-AA-CCTGA
*
1420620 AACCCTGAAAACCCGGAGAAAC
116 AACCC-G-AAA-CC-GA-AACC
* * ****
1420642 CGAACGCAACCGAATCACCCGAAACCCGGAATCCCCGAAACCC-TCGCACCCGAAAACCCCGAAA
1 CGAA---ACCCGAA--ACCCGAAA-CC-GAA-ACCCGAAACCCGAAAAACCCG--AA-CCCGAAA
* ** * * * * * * * *
1420706 CCCGAAACCCGAAACCGACAACCCGATAA-CCGAAA-CTGGAACCCCGAAACCGGAAACCCG-AA
55 CCCGACA-CCGAAA-AAAAAACCCTAAAACCCGAAACCCGAAACCCGGAAACCCGAAACCTGAAA
1420768 -CCGAAACCGAAAACC
118 CCCGAAACCG-AAACC
*
1420783 CGATAAACCCGAAACCCGTAAACCCGAAAACCCGAAACCC-AAAAA-CCGAACCCTATAACCCGG
1 CG--AAACCCGAAACCCG-AAA-CCG-AAACCCGAAACCCGAAAAACCCGAACCCGA-AACCC-G
* *** * * * *
1420846 AAACTCGAAACCCGAAACCC-GAAACCCTAAACCCGAAACCCGAAAACCCGAAACCCGGGAAACC
59 ACAC-CGAAA-AAAAAACCCTAAAACCCGAAACCCGAAACCCGGAAACCCGAAA-CC-TGAAACC
1420910 CGCAAACCAGGATAACC
120 CG-AAACC--GA-AACC
* * * *
1420927 CGAAACCCGTACACCC-AACCCG-AACCCGGATAA-CC---ACACCCGAACCCGAAA-CCGAATA
1 CGAAACCCG-AAACCCGAAACCGAAACCC-GA-AACCCGAAAAACCCGAACCCGAAACCCG-ACA
*** * * *
1420985 CC---CCGAAATCCCGAAAACCCGAAACCCGAAAACCC-GAATACCCGACACCTCCGAAACCCGA
62 CCGAAAAAAAAACCCTAAAACCCGAAACCCG-AAACCCGGAA-ACCCGAAACCT--GAAACCCGA
1421046 AACCCCGAAACC
123 AA--CCGAAACC
* * * * *
1421058 CGAAACCCGAAACCCTAACTCCAGAAAACTCCGAACACCCGAGAAACCCTAACCCGGAAACCCGT
1 CGAAACCCGAAACCCGAA-ACC-G-AAAC-CCGAA-ACCCGAAAAACCCGAACCC-GAAACCCGA
** * * * *
1421123 CAACCGAAAAACCCGAACCC-GAAACCCGAAACCCGAAAACC-TAAACACG-AACCTGAAAAACC
60 C-ACCGAAAAA--AAAACCCTAAAACCCGAAACCCGAAACCCGGAAACCCGAAACCTG--AAACC
*
1421185 CGACACCCGAAACC
120 CGA-AACCGAAACC
* *
1421199 CTAAACCCGAAACCCGAAACCCGTAAAAACACGCCAAACTCCGAAAATA-CCGAACACCGAAACC
1 CGAAACCCGAAACCCGAAA-CCG---AAAC-C-CGAAAC-CCGAAAA-ACCCGAAC-CCGAAA-C
* * * * *
1421263 CCTGAAACCCGAAACCCGAACGAAACCCGATAACCCGAAACCCGAATTA-CCAGAAACCCGAAAC
56 CC-GACA-CCGAAA----AA-AAAACCCTAAAACCCGAAACCCGAA--ACCCGGAAACCCGAAAC
*
1421327 CCGAAACCCGAAACCCGCAATACC
112 CTGAAACCCGAAA-CCG-AA-ACC
* * * * * *
1421351 CGAAACCCGAAACCCTAAAACCCGACACCCGAAACCC-TAATACCCGAAAACCGAAAACCCGAAA
1 CGAAACCCGAAACCC-GAAA-CCGAAACCCGAAACCCGAAAAACCCG-AACCCG-AAACCCGACA
* *** * *
1421415 CCCGAAACTTTAAAATACCC-GGCACCCTGACACCCGAAAACCCGGAAAACCC--AACCCGAAAC
62 -CCGAAA----AAAAAACCCTAAAACCC-GAAACCCG-AAACCCGG-AAACCCGAAACCTGAAAC
*
1421477 CAGAAAACCCCGAAACC
119 CCG-AAA--CCGAAACC
* * * * *
1421494 GCGAAACCCGCCAACCCGAAACCCGAACCCCGAAAACCG--AAACCGGATAACCCGAATGAAACC
1 -CGAAACCCG-AAACCCGAAA-CCGAAACCCGAAACCCGAAAAACCCG--AACCCG-A--AACCC
*** * * *
1421557 GA-ACCCGAAACCCGTCTTAAACCCGAAAACCCAGAAACCCGAAACCC-GAAACCCTGAAAACAG
58 GACA-CCGAAA-----AAAAAACCCTAAAACCC-GAAACCCGAAACCCGGAAACCC-GAAACCTG
*
1421620 AAACCCGAAA---TAACC
115 AAACCCGAAACCGAAACC
*
1421635 CGAAACCCTTGTAAACCCGAAACCCGAAAACCCGGAAACCCGCAAAACCCGAAACCCGAAACCCC
1 CGAAACCC--G-AAACCCGAAA-CCG-AAACCC-GAAACCCGAAAAACCCG-AACCCGAAA-CCC
**** * * * * * *
1421700 GACACCCGACCCGTAAATCTCCGATAAATCCGGCAACCTCGAAACCTCGG-AACCCGCAACCCGA
58 GACA-CCGA-AAAAAAAAC-CC--TAAAACCCGAAACC-CGAAACC-CGGAAACCCGAAACCTGA
*
1421764 AACCCGAAACCCGACACC
116 AACCCGAAA-CCGAAACC
*
1421782 TCGAAAACCCTGGAAACCCGTAAAACCCTGAAATACTCCTGCAAACCCCGAAATAACCCGAAACC
1 -CG-AAACCC--GAAACCCG--AAA-CC-G-AA-AC-CC-G-AAA-CCCGAAA-AACCCGAACCC
* ** * * *
1421847 GAAACCCGCCACCCG---AGTATACCCGTGAACCCCGAAACCCGAAATCCC-GAAACCCGAAACC
51 GAAACCCGACA-CCGAAAAAAAAACCC-TAAAACCCGAAACCCGAAA-CCCGGAAACCCGAAACC
*
1421908 CGAAACCCGAAACCCGAAACC
113 TGAAACCCGAAA-CCGAAACC
1421929 TCGAAACCCGAAACCCGAAACCAGATAACCCCGAAAACCCGGAAAAACCCGGAACCCGAAACCCG
1 -CGAAACCCGAAACCCGAAACC-GA-AA-CCCG-AAACCC-GAAAAACCC-GAACCCGAAACCCG
** * * * *
1421994 -CAACC----CTATAACCCTCGAAACCCGACACCCGAAAACCCGCAAACCCGGAAACCCGATGGA
59 AC-ACCGAAAAAAAAACCCT-AAAACCCGAAACCCG-AAACCCGGAAACCC-GAAA-CC--T-GA
1422054 AACCCG-AACCG-AA--
116 AACCCGAAACCGAAACC
* * * *
1422067 -GAAACCCGAAAACCCGAAACCGAAAACACCGATACCCG--CAACCCGAAACCGGAAACCCGAAA
1 CGAAACCCG-AAACCCGAAACCG-AAAC-CCGAAACCCGAAAAACCCG-AACCCGAAACCCGACA
**** * *
1422129 CCCGAAACCCGCAACCC--GAACCCGAAACCCGAAACCC-G-AACCCGAAACCCGAAACCCCGAA
62 -CCGAAA-AAAAAACCCTAAAACCCGAAACCCGAAACCCGGAAACCCGAAACCTGAAA-CCCGAA
1422190 ACCCGGAATACC
124 A-CC-GAA-ACC
* * **
1422202 CGAAAACTCCGATAAACCCGAAACCCGCACCCCTG--A-GGGAAAAACCCGAAAACCCGAATACC
1 CG-AAAC-CCG--AAACCCGAAA-CCGAAACCC-GAAACCCGAAAAACCCG--AACCCGAA-A-C
* ** * * *
1422264 CCGAAAACCCGAAAACCCGACACCC-GAAACCCGAAACCCGAAACCC-GAAATCCCGAAACCCG-
56 CCG-ACA-CCGAAAA--AAAAACCCTAAAACCCGAAACCCGAAACCCGGAAA-CCCGAAACCTGA
1422326 AACCCGAAACCCGGAAACGCC
116 AACCCGAAA-CC-GAAA--CC
* * *
1422347 CGGAAACCCG-AA-CCGAAACCCGAAACCTGAAACCCGAACCCGAAACTCCGAAACCCGAAACCC
1 CGAAAC-CCGAAACCCGAAA-CCGAAACCCGAAACCCGAA----AAAC-CCG-AACCCGAAACCC
* * * * *
1422410 GACAAACCCGTAAAAACCGAAAACCTCTAAACCCGAAACCCGAAACCCGGAAACCAGAAACCTAA
58 GAC--A-CCGAAAAAA---AAACCCT-AAAACCCGAAACCCGAAACCCGGAAACCCGAAACCTGA
1422475 AACCCGAAACCGAAACC
116 AACCCGAAACCGAAACC
* *
1422492 CGAAACCCGGAAATCCCGAAA-CGAAACCCGAAACCCGTAAAAACCCGAACCCGAAA-ACTACAC
1 CGAAACCC-GAAA-CCCGAAACCGAAACCCGAAACCCG-AAAAACCCGAACCCGAAACCCGACAC
*** *
1422555 CCTGAAAAAAACCCTAAAACCAGGAAACCCGAAAACCCGGACAACCCGAATAACCCTGAAACCCG
63 CGAAAAAAAAACCCTAAAACC-CGAAACCCG-AAACCCGGA-AACCCG-A-AA-CCTGAAACCCG
1422620 AAACCGAAAACC
122 AAACCG-AAACC
* *
1422632 CGAAACCCGCAACCCGTAAACCCTAAACCCGAAAACCCGAAAAAACCCTGACACCCGAAACCCGA
1 CGAAACCCGAAACCCG-AAA-CCGAAACCCG-AAACCCG-AAAAACCC-GA-ACCCGAAACCCGA
1422697 -ACCGAAA
60 CACCGAAA
1422704 CCCTAAACCT
Statistics
Matches: 3553, Mismatches: 474, Indels: 1030
0.70 0.09 0.20
Matches are distributed among these distances:
126 13 0.00
127 15 0.00
128 62 0.02
129 23 0.01
130 44 0.01
131 92 0.03
132 156 0.04
133 168 0.05
134 194 0.05
135 181 0.05
136 207 0.06
137 213 0.06
138 242 0.07
139 250 0.07
140 193 0.05
141 147 0.04
142 150 0.04
143 151 0.04
144 220 0.06
145 128 0.04
146 125 0.04
147 120 0.03
148 92 0.03
149 76 0.02
150 51 0.01
151 51 0.01
152 39 0.01
153 29 0.01
154 30 0.01
155 68 0.02
156 23 0.01
ACGTcount: A:0.41, C:0.40, G:0.14, T:0.04
Consensus pattern (132 bp):
CGAAACCCGAAACCCGAAACCGAAACCCGAAACCCGAAAAACCCGAACCCGAAACCCGACACCGA
AAAAAAAACCCTAAAACCCGAAACCCGAAACCCGGAAACCCGAAACCTGAAACCCGAAACCGAAA
CC
Found at i:1422544 original size:16 final size:16
Alignment explanation
Indices: 1418024--1422673 Score: 1330
Period size: 15 Copynumber: 297.3 Consensus size: 16
1418014 CCCGAACCTT
1418024 CGAAACCCG--AAACC
1 CGAAACCCGAAAAACC
* *
1418038 CGACACCCG-AAAATC
1 CGAAACCCGAAAAACC
1418053 CGAAACCCG-AAAACC
1 CGAAACCCGAAAAACC
1418068 CGAAACCCG--AAACC
1 CGAAACCCGAAAAACC
1418082 CGAAAACCCGAAACCGAACC
1 CG-AAACCCGAAA---AACC
1418102 CGAAACCCG-AAAACC
1 CGAAACCCGAAAAACC
1418117 CTGAATAACCCG---AACC
1 C-G-A-AACCCGAAAAACC
* * *
1418133 CGACTACCCGGAATA-C
1 CGA-AACCCGAAAAACC
*
1418149 CGAAACCCG-GAAACTC
1 CGAAACCCGAAAAAC-C
1418165 CGAAACCCG--AAACC
1 CGAAACCCGAAAAACC
**
1418179 CTCAA-CCGAAAAACC
1 CGAAACCCGAAAAACC
*
1418194 CGGAAACCCG--AACCC
1 C-GAAACCCGAAAAACC
1418209 CGAAACCC---AAACC
1 CGAAACCCGAAAAACC
*
1418222 CGACA-CCG---AACC
1 CGAAACCCGAAAAACC
* *
1418234 CTAAACCCG-AAACCC
1 CGAAACCCGAAAAACC
1418249 CGAAACCCG--AAACC
1 CGAAACCCGAAAAACC
*
1418263 CGAAACCGGAAACCTGAA-C
1 CGAAACCCGAAA----AACC
*
1418282 CGAAACCCG-GAAACC
1 CGAAACCCGAAAAACC
*
1418297 CGAAACCCG--AAATC
1 CGAAACCCGAAAAACC
1418311 CGAAACCCG--AAACC
1 CGAAACCCGAAAAACC
*
1418325 C-AAACCCAGGAAAA--
1 CGAAACCC-GAAAAACC
*
1418339 --AAACCCG-TAAA-C
1 CGAAACCCGAAAAACC
*
1418351 CGAAACCCGACGAAACC
1 CGAAACCCGA-AAAACC
* *
1418368 CGAAAACTCCG--CACCC
1 CG-AAAC-CCGAAAAACC
1418384 CG-AACCCG-AAAACC
1 CGAAACCCGAAAAACC
*
1418398 CGAAA-CCGTAACAACC
1 CGAAACCCG-AAAAACC
**
1418414 CGAAAACCCGAACCCACC
1 CG-AAACCCGAA-AAACC
*
1418432 C---ACCCCAAAAACTC
1 CGAAACCCGAAAAAC-C
1418446 CGAAACCCG-AAAACC
1 CGAAACCCGAAAAACC
1418461 CGAGAACCCGAAACCCGAAACC
1 CGA-AACCCG-AA----AAACC
* *
1418483 CGAAACCCGCGAATACC
1 CGAAACCCG-AAAAACC
1418500 CGAAACCCG--AAACC
1 CGAAACCCGAAAAACC
*
1418514 CGAAACCCGAAAACCC
1 CGAAACCCGAAAAACC
1418530 CG-AACCCG--AAA-C
1 CGAAACCCGAAAAACC
*
1418542 CGACACCCG-AAAACC
1 CGAAACCCGAAAAACC
1418557 CGAAACCCGAACCCCGAAACC
1 CGAAACCCGAA-----AAACC
*
1418578 ACGGAAA-CCGAAAATCC
1 -C-GAAACCCGAAAAACC
1418595 CGAAAACCCG--AAACC
1 CG-AAACCCGAAAAACC
1418610 CGACAACCCG-AAAACC
1 CGA-AACCCGAAAAACC
* *
1418626 CGAACCCCG--AAATC
1 CGAAACCCGAAAAACC
1418640 CGAAA-CCG--AAACC
1 CGAAACCCGAAAAACC
* *
1418653 CG-AACCCGTAAATCC
1 CGAAACCCGAAAAACC
** *
1418668 CGAAACTCCGACCATCC
1 CGAAAC-CCGAAAAACC
*
1418685 TCGCAAAAACCCG--AACCC
1 -CG---AAACCCGAAAAACC
1418703 CGAAACCCG--AAA-C
1 CGAAACCCGAAAAACC
1418716 CGAAACCCTG--AAACC
1 CGAAACCC-GAAAAACC
* *
1418731 CGAAA-CCGGAACACC
1 CGAAACCCGAAAAACC
*
1418746 CTAAACCCG-AAAACC
1 CGAAACCCGAAAAACC
*
1418761 CGAATACCCTAATGAAACC
1 CGAA-ACCCGAA--AAACC
1418780 CGGAAACCCG--AAACC
1 C-GAAACCCGAAAAACC
1418795 CGAAACCCG--AAACC
1 CGAAACCCGAAAAACC
1418809 TCGAACACCCG--AAA-C
1 -CGAA-ACCCGAAAAACC
*
1418824 CGACACAACCG-AAAACC
1 CGA-A-ACCCGAAAAACC
1418841 CGAAAACCCG--AAACC
1 CG-AAACCCGAAAAACC
*
1418856 CGGAAACCCGAACAACC
1 C-GAAACCCGAAAAACC
1418873 CG-AACCCG--AAACC
1 CGAAACCCGAAAAACC
1418886 CGAAACCCG--AAACC
1 CGAAACCCGAAAAACC
* *
1418900 ATGAACAACCGAAAAACC
1 -CGAA-ACCCGAAAAACC
*
1418918 CGAAACCCG-AATACC
1 CGAAACCCGAAAAACC
1418933 CGGAAACCCGAAACCCGAACC
1 C-GAAACCCGAAA----AACC
* *
1418954 TGAAACCCGATAAACC
1 CGAAACCCGAAAAACC
*
1418970 CGAAAGCCG--AAA-C
1 CGAAACCCGAAAAACC
1418983 CGAAATCCCG--AAACC
1 CGAAA-CCCGAAAAACC
1418998 CGAAACCCG---AACC
1 CGAAACCCGAAAAACC
*
1419011 CGCAACCCG--AAA-C
1 CGAAACCCGAAAAACC
1419024 CGAAACCCG--AAACC
1 CGAAACCCGAAAAACC
1419038 CGAAACCCGAACCCGAAACC
1 CGAAACCCGAA----AAACC
1419058 CGAAACCCGAATAAA-C
1 CGAAACCCGAA-AAACC
1419074 CGAAACCCG-AAAA-C
1 CGAAACCCGAAAAACC
**
1419088 CGAAGACCCGAAACTCC
1 CGAA-ACCCGAAAAACC
*
1419105 CG-AACCCG-AAATCC
1 CGAAACCCGAAAAACC
1419119 CGAAACCCG--AAACC
1 CGAAACCCGAAAAACC
1419133 CGAAAACCCGAAAAACC
1 CG-AAACCCGAAAAACC
1419150 CGAACTACCCG-AAAACC
1 CGAA--ACCCGAAAAACC
*
1419167 CGACAACCCG-AAAAGC
1 CGA-AACCCGAAAAACC
**
1419183 CGAAACCCG-AACCCC
1 CGAAACCCGAAAAACC
*** *
1419198 CGAAACCCGCGGAAGC
1 CGAAACCCGAAAAACC
1419214 CGAAACCCG--AAACC
1 CGAAACCCGAAAAACC
1419228 CTGAAACCCG-AAAACC
1 C-GAAACCCGAAAAACC
*
1419244 CGAAACCCG--ACACC
1 CGAAACCCGAAAAACC
1419258 GCGAAACCCG--AAACC
1 -CGAAACCCGAAAAACC
*
1419273 CGAAACCGGAAACCCGAACC
1 CGAAACCCGAAA----AACC
*
1419293 CGAAACCCGAAAACCC
1 CGAAACCCGAAAAACC
1419309 CGAAACCCG---AACC
1 CGAAACCCGAAAAACC
*
1419322 CG-AACCCG--GAACC
1 CGAAACCCGAAAAACC
1419335 CGAAACCCGAAAAAGAACTC
1 CGAAACCCG--AAA-AAC-C
1419355 CGAAACCCGAAACCGAAACC
1 CGAAACCCG-AA---AAACC
1419375 CGAAACCCG--AAACC
1 CGAAACCCGAAAAACC
1419389 TCGAAAACCTCG--AAACC
1 -CG-AAACC-CGAAAAACC
*
1419406 GGAAATCCCGAAAAACC
1 CGAAA-CCCGAAAAACC
1419423 CGAAACCCG-AAAACC
1 CGAAACCCGAAAAACC
* *
1419438 CTAAACCCTGAGAAA-C
1 CGAAACCC-GAAAAACC
*
1419454 CTAATACCCG--AAACC
1 CGAA-ACCCGAAAAACC
* * *
1419469 CGCACCCCG--CAACC
1 CGAAACCCGAAAAACC
* *
1419483 CTAAACCCG--ACACC
1 CGAAACCCGAAAAACC
*
1419497 CGAAACCCG--AACCC
1 CGAAACCCGAAAAACC
*
1419511 CGAAACCCG-GAAACC
1 CGAAACCCGAAAAACC
*
1419526 CGAAAACCCG-AATACC
1 CG-AAACCCGAAAAACC
*
1419542 CTGAAA-CC--AGAACC
1 C-GAAACCCGAAAAACC
* *
1419556 CGGAACCCCG---ACCC
1 C-GAAACCCGAAAAACC
**
1419570 CGAAACCCG--ACCCC
1 CGAAACCCGAAAAACC
*
1419584 CTATAACCCGAAACAAACC
1 CGA-AACCCG-AA-AAACC
1419603 CGAACACCCG--AAACC
1 CGAA-ACCCGAAAAACC
1419618 CGGATAACCCG-AAAACC
1 C-GA-AACCCGAAAAACC
**
1419635 CGAAACCCCTAAAACC
1 CGAAACCCGAAAAACC
1419651 CGAAA-CCGAAACCCGAACC
1 CGAAACCCGAAA----AACC
* **
1419670 CGACACCCGAATCACC
1 CGAAACCCGAAAAACC
1419686 CGAAA-CCGAAAAACC
1 CGAAACCCGAAAAACC
*
1419701 CGAAACCCG-AAAACT
1 CGAAACCCGAAAAACC
1419716 CGAAACCCG--AAACC
1 CGAAACCCGAAAAACC
*
1419730 CGAACCCCG---AACC
1 CGAAACCCGAAAAACC
*
1419743 CGGAAACCCGAACCGTTAAAAC
1 C-GAAACCCGAA-----AAACC
* *
1419765 CG-AACCCGCAAACCC
1 CGAAACCCGAAAAACC
1419780 CGAAACCCGAAAAACC
1 CGAAACCCGAAAAACC
**
1419796 TCGACCCCCG--AAACC
1 -CGAAACCCGAAAAACC
1419811 CGAAACCCG-AAAACC
1 CGAAACCCGAAAAACC
*
1419826 CGAAACCCG-GAAACC
1 CGAAACCCGAAAAACC
1419841 CGAAA-CCG--AAA-C
1 CGAAACCCGAAAAACC
*
1419853 CGAAAACCG--AAA-C
1 CGAAACCCGAAAAACC
1419866 CGAAACCCTG--AAACC
1 CGAAACCC-GAAAAACC
1419881 CGAAACCCG--AAACC
1 CGAAACCCGAAAAACC
1419895 CTGAAACCCG--AAACC
1 C-GAAACCCGAAAAACC
1419910 CG-AACCCGACACCCTAAACC
1 CGAAACCCGA-A----AAACC
*
1419930 TCTGTAAACCCGAACAACC
1 -C-G-AAACCCGAAAAACC
*
1419949 CGAAACCCG--ACACC
1 CGAAACCCGAAAAACC
1419963 CGAAA-CCGAAAAACC
1 CGAAACCCGAAAAACC
*
1419978 CGAAACCCG--CAACC
1 CGAAACCCGAAAAACC
1419992 CGAAAACCC---AAACC
1 CG-AAACCCGAAAAACC
* *
1420006 TGAAACCCTAAGAAACC
1 CGAAACCCGAA-AAACC
1420023 TCGATAACCCG--AAACC
1 -CGA-AACCCGAAAAACC
***
1420039 CGAAAACCCGAACCTCC
1 CG-AAACCCGAAAAACC
*
1420056 GGCGAAAACCG--AAACC
1 --CGAAACCCGAAAAACC
1420072 CGAAACCCG--AAA-C
1 CGAAACCCGAAAAACC
* **
1420085 CGAAACCC-TAACTCC
1 CGAAACCCGAAAAACC
1420100 CGAAA-CCG-AAAACC
1 CGAAACCCGAAAAACC
1420114 CGAAAACCCGAAACCCGAACC
1 CG-AAACCCGAAA----AACC
1420135 CGTGAAACCCG--AAACC
1 C--GAAACCCGAAAAACC
1420151 CGGGGAAACCCG-AAAACTC
1 C---GAAACCCGAAAAAC-C
1420170 CGAACACCCG--AAACC
1 CGAA-ACCCGAAAAACC
*
1420185 CGAAACTCGAAAAACC
1 CGAAACCCGAAAAACC
*
1420201 CGGAAAAACCCG-GAAACC
1 C-G--AAACCCGAAAAACC
*
1420219 TCGGACACCCG-AAAACC
1 -C-GAAACCCGAAAAACC
* *
1420236 CTAAACCCG-AAACCC
1 CGAAACCCGAAAAACC
*
1420251 CGAGAAACCCGTAAAACTC
1 C--GAAACCCGAAAAAC-C
*
1420270 CG-AACCCG-TAAA-C
1 CGAAACCCGAAAAACC
*
1420283 CGAAACCCGGAAAACC
1 CGAAACCCGAAAAACC
1420299 CGAAACCCG--AAA-C
1 CGAAACCCGAAAAACC
1420312 CGAAACCCG---AACC
1 CGAAACCCGAAAAACC
1420325 CGAAA-CCG-AAAA-C
1 CGAAACCCGAAAAACC
1420338 CGAAA-CCG-AAAACC
1 CGAAACCCGAAAAACC
*
1420352 CTAAACCCG--AAA-C
1 CGAAACCCGAAAAACC
*
1420365 CGAAACCCGAATAACC
1 CGAAACCCGAAAAACC
*
1420381 CGAAAACCGAAAAACC
1 CGAAACCCGAAAAACC
*
1420397 CG-AA-CCGAAAACCC
1 CGAAACCCGAAAAACC
*
1420411 CGAAACCCGACGGAAACC
1 CGAAACCCGA--AAAACC
* *
1420429 CGTAACACCG--CAACC
1 CGAAAC-CCGAAAAACC
1420444 CGAAACCCG-AAAACC
1 CGAAACCCGAAAAACC
*
1420459 CTGTAAACCCGAAAACCC
1 C-G-AAACCCGAAAAACC
1420477 CGAAACCCG--AAACC
1 CGAAACCCGAAAAACC
*
1420491 CGCAACCCTG--AAACTC
1 CGAAACCC-GAAAAAC-C
*
1420507 CGAAACCCG-ATAACC
1 CGAAACCCGAAAAACC
1420522 CGAAACCCGGAAAAACC
1 CGAAACCC-GAAAAACC
1420539 CGAAACCCG--AAACC
1 CGAAACCCGAAAAACC
1420553 CGAAACCCGAAAAACC
1 CGAAACCCGAAAAACC
*
1420569 CGAAACCCG-AACACC
1 CGAAACCCGAAAAACC
1420584 CTGATAACCCG--AAACC
1 C-GA-AACCCGAAAAACC
*
1420600 CGAAACCCGAATAACCC
1 CGAAACCCGAA-AAACC
1420617 CGAAACCCTG-AAAACC
1 CGAAACCC-GAAAAACC
* *
1420633 CGGAGAAACCGAACGCAA-C
1 C-GA-AACCCGAA--AAACC
1420652 CGAATCACCCG--AAACC
1 CGAA--ACCCGAAAAACC
* *
1420668 CGGAATCCCCG-AAACCC
1 C-GAA-ACCCGAAAAACC
* *
1420685 TCG-CACCCGAAAACCC
1 -CGAAACCCGAAAAACC
1420701 CGAAACCCG--AAACC
1 CGAAACCCGAAAAACC
*
1420715 CGAAA-CCG-ACAACC
1 CGAAACCCGAAAAACC
*
1420729 CGATAA-CCG--AAACT
1 CGA-AACCCGAAAAACC
* *
1420743 GGAACCCCG--AAACC
1 CGAAACCCGAAAAACC
*
1420757 GGAAACCCGAACCGAAA-C
1 CGAAACCCGAA---AAACC
*
1420775 CGAAAACCCGATAAACC
1 CG-AAACCCGAAAAACC
*
1420792 CGAAACCCG-TAAACC
1 CGAAACCCGAAAAACC
1420807 CGAAAACCCG--AAACC
1 CG-AAACCCGAAAAACC
* *
1420822 CAAAAACCG---AACC
1 CGAAACCCGAAAAACC
* * *
1420835 CTATAACCCG-GAAACT
1 CGA-AACCCGAAAAACC
1420851 CGAAACCCG--AAACC
1 CGAAACCCGAAAAACC
*
1420865 CGAAACCC--TAAACC
1 CGAAACCCGAAAAACC
1420879 CGAAACCCG-AAAACC
1 CGAAACCCGAAAAACC
**
1420894 CGAAACCCGGGAAACC
1 CGAAACCCGAAAAACC
* * *
1420910 CGCAAACCAGGATAACC
1 CG-AAACCCGAAAAACC
*
1420927 CGAAACCCGTACACCCAACC
1 CGAAACCCG-A-A--AAACC
* *
1420947 CG-AACCCGGATAA-C
1 CGAAACCCGAAAAACC
*
1420961 C-ACACCCG---AACC
1 CGAAACCCGAAAAACC
* *
1420973 CGAAA-CCGAATACCC
1 CGAAACCCGAAAAACC
1420988 CGAAATCCCG-AAAACC
1 CGAAA-CCCGAAAAACC
1421004 CGAAACCCG-AAAACC
1 CGAAACCCGAAAAACC
* *
1421019 CGAATACCCG-ACACCTC
1 CGAA-ACCCGAAAAAC-C
*
1421036 CGAAACCCG-AAACCC
1 CGAAACCCGAAAAACC
1421051 CGAAACCCG--AAACC
1 CGAAACCCGAAAAACC
*
1421065 CGAAACCCTAACTCCAGAAAACTC
1 CGAAA--C---C-CGA-AAAAC-C
*
1421089 CGAACACCCGAGAAACC
1 CGAA-ACCCGAAAAACC
* *
1421106 C-TAACCCG-GAAACC
1 CGAAACCCGAAAAACC
*
1421120 CGTCAA-CCGAAAAACC
1 CG-AAACCCGAAAAACC
1421136 CG-AACCCG--AAACC
1 CGAAACCCGAAAAACC
*
1421149 CGAAACCCGAAAACCTAAACA
1 CGAAACCCG--AA---AAACC
*
1421170 CG-AACCTGAAAAACC
1 CGAAACCCGAAAAACC
*
1421185 CGACACCCG--AAACC
1 CGAAACCCGAAAAACC
*
1421199 CTAAACCCG--AAACC
1 CGAAACCCGAAAAACC
1421213 CGAAACCCGTAAAAACAC
1 CGAAACCCG-AAAAAC-C
*
1421231 GCCAAACTCCGAAAATA-C
1 -CGAAAC-CCGAAAA-ACC
*
1421249 CG-AACACCG-AAACCC
1 CGAAAC-CCGAAAAACC
*
1421264 CTGAAACCCG-AAACCC
1 C-GAAACCCGAAAAACC
*
1421280 GAACGAAACCCG-ATAACC
1 ---CGAAACCCGAAAAACC
**
1421298 CGAAACCCGAATTACC
1 CGAAACCCGAAAAACC
*
1421314 AGAAACCCG--AAACC
1 CGAAACCCGAAAAACC
1421328 CGAAACCCG--AAACC
1 CGAAACCCGAAAAACC
1421342 CGCAATACCCG--AAACC
1 CG-AA-ACCCGAAAAACC
*
1421358 CGAAACCC-TAAAACC
1 CGAAACCCGAAAAACC
*
1421373 CGACACCCG--AAACC
1 CGAAACCCGAAAAACC
*
1421387 CTAATACCCG-AAAA-C
1 CGAA-ACCCGAAAAACC
1421402 CGAAAACCCG--AAACC
1 CG-AAACCCGAAAAACC
***
1421417 CGAAACTTTAAAATACC
1 CGAAACCCGAAAA-ACC
** *
1421434 CGGCACCCTG--ACACC
1 CGAAACCC-GAAAAACC
*
1421449 CGAAAACCCGGAAAACC
1 CG-AAACCCGAAAAACC
1421466 C--AACCCG--AAACC
1 CGAAACCCGAAAAACC
*
1421478 AGAAAACCCCG--AAACC
1 CG-AAA-CCCGAAAAACC
**
1421494 GCGAAACCCG-CCAACC
1 -CGAAACCCGAAAAACC
*
1421510 CGAAACCCG--AACCC
1 CGAAACCCGAAAAACC
*
1421524 CGAAAACCG--AAACC
1 CGAAACCCGAAAAACC
*
1421538 GGATAACCCGAATGAAA-C
1 CGA-AACCCGAA--AAACC
1421556 CG-AACCCG--AAACC
1 CGAAACCCGAAAAACC
1421569 CGTCTTAAACCCG-AAAACC
1 CG----AAACCCGAAAAACC
1421588 CAGAAACCCG--AAACC
1 C-GAAACCCGAAAAACC
1421603 CGAAACCCTG-AAAA-C
1 CGAAACCC-GAAAAACC
*
1421618 AGAAACCCGAAATAACC
1 CGAAACCCGAAA-AACC
*
1421635 CGAAACCCTTG-TAAACC
1 CGAAACCC--GAAAAACC
1421652 CGAAACCCG-AAAACC
1 CGAAACCCGAAAAACC
*
1421667 CGGAAACCCGCAAAACC
1 C-GAAACCCGAAAAACC
*
1421684 CGAAACCCG-AAACCC
1 CGAAACCCGAAAAACC
*
1421699 CGACACCCG----ACC
1 CGAAACCCGAAAAACC
*
1421711 CGTAAATCTCCGATAAATCC
1 CG-AAA-C-CCGA-AAAACC
* *
1421731 GGCAACCTCG--AAACC
1 CGAAACC-CGAAAAACC
*
1421746 TCGGAACCCGCAACCCGAAACC
1 -CGAAACCCG-AA----AAACC
*
1421768 CGAAACCCG--ACACC
1 CGAAACCCGAAAAACC
*
1421782 TCGAAAACCCTG-GAAACC
1 -CG-AAACCC-GAAAAACC
*
1421800 CGTAAAACCCTGAAATACTC
1 CG--AAACCC-GAAAAAC-C
1421820 CTGCAAACCCCGAAATAACC
1 C-G-AAA-CCCGAAA-AACC
1421840 CGAAA-CCG--AAACC
1 CGAAACCCGAAAAACC
** * *
1421853 CGCCACCCGAGTATACC
1 CGAAACCCGA-AAAACC
*
1421870 CGTGAACCCCG--AAACC
1 C--GAAACCCGAAAAACC
1421886 CGAAATCCCG--AAACC
1 CGAAA-CCCGAAAAACC
1421901 CGAAACCCG--AAACC
1 CGAAACCCGAAAAACC
1421915 CGAAACCCG--AAACC
1 CGAAACCCGAAAAACC
1421929 TCGAAACCCG--AAACC
1 -CGAAACCCGAAAAACC
* * *
1421944 CGAAACCAGATAACCC
1 CGAAACCCGAAAAACC
1421960 CGAAAACCCGGAAAAACC
1 CG-AAACCC-GAAAAACC
*
1421978 CGGAACCCG--AAACC
1 CGAAACCCGAAAAACC
* * * *
1421992 CGCAACCCTATAACCC
1 CGAAACCCGAAAAACC
*
1422008 TCGAAACCCG--ACACC
1 -CGAAACCCGAAAAACC
*
1422023 CGAAAACCCG-CAAACC
1 CG-AAACCCGAAAAACC
*
1422039 CGGAAACCCGATGGAAACC
1 C-GAAACCCGA--AAAACC
1422058 CG-AA-CCGAAGAAACC
1 CGAAACCCGAA-AAACC
1422073 CGAAAACCCG--AAA-C
1 CG-AAACCCGAAAAACC
*
1422087 CGAAAACACCG--ATACC
1 CG-AAAC-CCGAAAAACC
*
1422103 CGCAACCCG--AAACC
1 CGAAACCCGAAAAACC
*
1422117 GGAAACCCG--AAACC
1 CGAAACCCGAAAAACC
*
1422131 CGAAACCCG--CAACC
1 CGAAACCCGAAAAACC
1422145 CG-AACCCG--AAACC
1 CGAAACCCGAAAAACC
1422158 CGAAACCCG---AACC
1 CGAAACCCGAAAAACC
*
1422171 CGAAACCCG-AAACCC
1 CGAAACCCGAAAAACC
* *
1422186 CGAAACCCGGAATACC
1 CGAAACCCGAAAAACC
*
1422202 CGAAAACTCCGATAAACC
1 CG-AAAC-CCGAAAAACC
* *
1422220 CGAAACCCG--CACCC
1 CGAAACCCGAAAAACC
**
1422234 CTG--A-GGGAAAAACC
1 C-GAAACCCGAAAAACC
* *
1422248 CGAAAACCCGAATACCC
1 CG-AAACCCGAAAAACC
1422265 CGAAAACCCG-AAAACC
1 CG-AAACCCGAAAAACC
*
1422281 CGACACCCG--AAACC
1 CGAAACCCGAAAAACC
1422295 CGAAACCCG--AAACC
1 CGAAACCCGAAAAACC
1422309 CGAAATCCCGAAACCCGAACC
1 CGAAA-CCCGAAA----AACC
**
1422330 CGAAACCCGGAAACGCC
1 CGAAACCC-GAAAAACC
1422347 CGGAAACCCGAACCGAAACC
1 C-GAAACCCGAA---AAACC
*
1422367 CGAAACCTGAAACCCGAACC
1 CGAAACCCGAAA----AACC
1422387 CGAAACTCCG--AAACC
1 CGAAAC-CCGAAAAACC
*
1422402 CGAAACCCGACAAACC
1 CGAAACCCGAAAAACC
*
1422418 CGTAAAAACCG-AAAACC
1 CG--AAACCCGAAAAACC
*
1422435 TCTAAACCCG--AAACC
1 -CGAAACCCGAAAAACC
*
1422450 CGAAACCCG-GAAACC
1 CGAAACCCGAAAAACC
* *
1422465 AGAAA-CC-TAAAACC
1 CGAAACCCGAAAAACC
1422479 CGAAA-CCG--AAACC
1 CGAAACCCGAAAAACC
* *
1422492 CGAAACCCGGAAATCC
1 CGAAACCCGAAAAACC
1422508 CGAAA--CG--AAACC
1 CGAAACCCGAAAAACC
1422520 CGAAACCCGTAAAAACC
1 CGAAACCCG-AAAAACC
1422537 CG-AACCCGAAAACTACACC
1 CGAAACCCG-AAA--A-ACC
*
1422556 CTGAAAAAAACCC-TAAAACC
1 C-G----AAACCCGAAAAACC
*
1422576 AGGAAACCCG-AAAACC
1 -CGAAACCCGAAAAACC
*
1422592 CGGACAACCCGAATAACC
1 C-GA-AACCCGAAAAACC
1422610 CTGAAACCCG--AAA-C
1 C-GAAACCCGAAAAACC
1422624 CGAAAACCCG--AAACC
1 CG-AAACCCGAAAAACC
* *
1422639 CGCAACCCG-TAAACC
1 CGAAACCCGAAAAACC
*
1422654 CTAAACCCG-AAAACC
1 CGAAACCCGAAAAACC
1422669 CGAAA
1 CGAAA
1422674 AAACCCTGAC
Statistics
Matches: 3687, Mismatches: 415, Indels: 1067
0.71 0.08 0.21
Matches are distributed among these distances:
11 5 0.00
12 59 0.02
13 270 0.07
14 817 0.22
15 854 0.23
16 688 0.19
17 379 0.10
18 181 0.05
19 157 0.04
20 149 0.04
21 65 0.02
22 32 0.01
23 13 0.00
24 12 0.00
25 6 0.00
ACGTcount: A:0.41, C:0.40, G:0.14, T:0.04
Consensus pattern (16 bp):
CGAAACCCGAAAAACC
Found at i:1422545 original size:162 final size:160
Alignment explanation
Indices: 1417886--1422712 Score: 1228
Period size: 166 Copynumber: 29.2 Consensus size: 160
1417876 CGCAACCCGA
* *
1417886 AAACCCGAATACCCG-ACCCCGCAACCCCGAAAC-CTGAAACCCGAAACCCG-AAACCCGAATAA
1 AAACCCGAA-ACCCGAAACCCG-AA-CCCGAAACTCCGAAACCCGAAACCCGAAAACCCGAATAA
* * * * *
1417948 CTCCG-AAA-CCGAGAACGCCGAAATCCCGATCACCCGAACCTCGGGAAAACCCG--AA-CCG-A
63 -ACCGAAAACCCGAAAAC-CCGAAA-CCCGA-AACCCGAAAC-C-AG-AAACCCGAAAACCCGAA
*
1418007 ACCCCAACCCG-AACCTTC-GAAA--CCC-GAAACCCGACACCCG
121 ACCCGAACCCGAAACC--CGGAAACGCCCGGAAA-CCGA-A-CCG
*
1418047 AAAATCCGAAACCCGAAAACCCGAAACCCGAAAC-CCGAAAACCCGAAA-CCG--AACCCG-A-A
1 -AAACCCGAAACCCG-AAACCCG-AACCCGAAACTCCG-AAACCCGAAACCCGAAAACCCGAATA
* * *
1418106 ACCCGAAAACCCTGAATAACCCG-AACCCGACTACCCGGAATACC-GAAACCCGGAAACTCCGAA
62 AACCGAAAACCC-GAA-AACCCGAAACCCGA-AACCC-GAA-ACCAGAAACCCGAAAAC-CCGAA
** **
1418169 ACCCGAAACCCTCAA-CC-GAAAAACCCGGAAACCCGAACCCCG
121 ACCCG-AACCCGAAACCCGGAAACGCCCGGAAA-CCGAA--CCG
* *
1418211 AAACCC-AAACCCGACA-CCGAACCCTAAAC-CCGAAACCCCGAAACCCG-AAACCCG---AAAC
1 AAACCCGAAACCCGAAACCCGAACCCGAAACTCCGAAA-CCCGAAACCCGAAAACCCGAATAAAC
* * * * *
1418269 CGGAAACCTG--AA-CCGAAACCCGGAAACCCGAAACCCGAAATCCG-AAACCCGAAACCCAAAC
65 CGAAAACCCGAAAACCCGAAACCC-GAAACCCGAAACCAGAAACCCGAAAACCCGAAACCCGAAC
*
1418330 CCAGGAAAAAAACCCGTAAACCGAAACCCGACGAAACCCGAAAACTCCG
129 CC--G----AAACCCGGAAA-CG---CCCG--GAAA-CCG--AA--CCG
* * * ** *
1418379 CACCCCG-AACCCGAAAACCCGAAACCGTAACAAC-CCGAAAACCCG-AACCC-ACCCACCCCAA
1 AAACCCGAAACCCG-AAACCCGAACCCG--A-AACTCCG-AAACCCGAAACCCGA-AAACCCGAA
* *
1418440 -AAACTCCG-AAACCCGAAAACCCGAGAACCCGAAACCCGAAACCCGAAACCCGCGAATACCCGA
60 TAAA--CCGAAAACCCGAAAACCCGA-AACCCGAAACCCGAAACCAGAAA-CC-CGAAAACCCGA
* *
1418503 AACCCGAAACCCGAAACCCGAAAAC-CCC-GAACCCGAAACCG
120 AACCCG-AACCCGAAACCCGGAAACGCCCGGAAACCG-AACCG
*
1418544 ACACCCGAAAACCCGAAACCCGAACCCCGAAAC-CACGGAAA-CCGAAAATCCCGAAAACCCG-A
1 AAACCCG-AAACCCGAAACCCGAA-CCCGAAACTC-C-GAAACCCG-AAA-CCCGAAAACCCGAA
* * * *
1418606 -AACCCGACAACCCGAAAACCCGAACCCCGAAATCCGAAACC-GAAACCCG--AACCCGTAAATC
60 TAAACCGAAAACCCGAAAACCCGAAACCCGAAACCCGAAACCAGAAACCCGAAAACCCG-AAA-C
* * ** *
1418667 CCGAAACTCCGACCATCCTCGCAAAAACCC-GAACCCCGAAACCCG
123 CCG-AAC-CCGA--AACC-CGGAAACGCCCGGAA-ACCG-AA-CCG
* * * *
1418712 AAA-CCGAAACCCTGAAACCCGAAACCGGAACAC-CCTAAACCCGAAAACCCGAATACCCTAATG
1 AAACCCGAAACCC-GAAACCCG-AACCCGAA-ACTCCGAAACCCG-AAACCCGAAAACCCGAAT-
* *
1418775 AAACCCGGAAACCCG-AAACCCGAAACCCGAAACCTCGAACACCCGAAA-CCGACACAA-CCGAA
61 AAA-CCGAAAACCCGAAAACCCGAAACCCGAAACC-CGAA-ACCAGAAACCCGA-A-AACCCG-A
*
1418837 AACCCGAAAACCCGAAACCCGGAAA--CCCGAACAACCCGAACCCG
120 AACCCG--AACCCGAAACCCGGAAACGCCCGGA-AA-CCGAA-CCG
* *
1418881 AAACCCGAAACCCGAAACCATGAACAACCGAAAAAC-CCGAAACCCGAATACCCGGAAACCCG-A
1 AAACCCGAAACCCGAAACC-CGAAC--CCG--AAACTCCGAAACCCGAA-ACCCGAAAACCCGAA
* * *
1418944 -AACCCG--AACCTG-AAACCCGATAAACCCGAAAGCCGAAACC-GAAATCCCG-AAACCCGAAA
60 TAAACCGAAAACCCGAAAACCCG--AAACCCGAAACCCGAAACCAGAAA-CCCGAAAACCCGAAA
*
1419003 CCCGAACCCGCAACCC-GAAA---CC-GAAA-C---CCG
122 CCCGAACCCGAAACCCGGAAACGCCCGGAAACCGAACCG
* *
1419033 AAACCCGAAACCCG-AACCCGAAACCCGAAAC-CCGAATAAACCGAAACCCGAAAA-CCGAA-GA
1 AAACCCGAAACCCGAAACCCG-AACCCGAAACTCCG-A-AACCCGAAACCCGAAAACCCGAATAA
* * *
1419094 CCCGAAACTCCCG--AACCCGAAATCCCGAAACCCGAAACCCGAAAACCCGAAAAACCCGAACTA
63 ACCGAAA-ACCCGAAAACCCGAAA-CCCGAAACCCGAAACCAG-AAACCCG-AAAACCCGAA--A
*
1419157 CCCGAAAACCCGACAACCC-GAAAAG-CC-GAAACCCGAACCCCCG
122 CCCG--AACCCGA-AACCCGGAAACGCCCGGAAA-CCGAA---CCG
* * *
1419200 AAACCCGCGGAAGCCGAAACCCGAAACCCTGAAAC-CCGAAAACCCGAAACCCG-ACACCGCG-A
1 AAA-CC-CGAAACCCGAAACCCG-AACCC-GAAACTCCG-AAACCCGAAACCCGAAAACC-CGAA
* * *
1419262 -AACCCG-AAACCCGA-AACCGGAAACCCG-AACCCGAAACCCGAAAACCCCG-AAACCCG-AAC
60 TAAACCGAAAACCCGAAAACCCGAAACCCGAAACCCGAAACCAG-AAA-CCCGAAAACCCGAAAC
* **
1419321 CCGAACCCGGAACCC-GAAA--CCC-GAAAAAGAACTCCG
123 CCGAACCCGAAACCCGGAAACGCCCGGAAACCGAA--CCG
* *
1419357 AAACCCGAAA-CCGAAACCCGAAACCCGAAAC-CTCGAAAACCTCGAAACCGGAAATCCCGAA-A
1 AAACCCGAAACCCGAAACCCG-AACCCGAAACTC-CG-AAACC-CGAAACCCGAAAACCCGAATA
* * * * *
1419419 AACCCG-AAACCCGAAAACCCTAAACCCTGAGAAACCTAATACCCGAAACCCGCACCCCGCAACC
62 AA-CCGAAAACCCGAAAACCCGAAACCC-GA-AACCCGAA-ACCAGAAACCCG-A-----AAACC
*
1419483 CTAAACCCGACACCCGAAACCC-G-AAC-CCC-GAAACCCGGAAACCCG
117 CGAAACCCGA-ACCCGAAACCCGGAAACGCCCGGAAA-CC-G-AA-CCG
* * * *
1419528 AAAACCCGAATACCCTGAAACCAGAACCCGGAACCCCG-ACCCCGAAACCCGACCCCCTATAACC
1 -AAACCCGAA-ACCC-GAAACCCGAACCCGAAACTCCGAAACCCGAAACCCGA------A-AACC
* *
1419592 CGAAACAAACCCGAACACCCG-AAACCCGGATAACCCGAAAACCCGAAACCCCTA-AAACCCG-A
56 CG-AATAAA-CCGAAAACCCGAAAACCC-GA-AACCCG-AAACCCGAAA--CC-AGAAACCCGAA
* * *
1419654 AA-CCGAAACCCGAACCCGACACCC-GAATCACCC-GAAACCGAA---
113 AACCCGAAACCCGAACCCGAAACCCGGAAACGCCCGGAAACCGAACCG
* * *
1419696 AAACCCGAAACCCGAAAACTCGAAACCCGAAAC-CCGAACCCCG-AACCCGGAAACCCGAACCGT
1 AAACCCGAAACCCG-AAACCCG-AACCCGAAACTCCGAAACCCGAAACCCGAAAACCCGAA----
* ** *
1419759 TAAAACCG--AACCCGCAAACCCCGAAACCCGAAAAACCTCGACCCCCGAAACCCG-AAACCCGA
60 T-AAACCGAAAACCCG-AAAACCCGAAACCCG--AAACC-CGAAACCAGAAACCCGAAAACCCG-
* *
1419821 AAACCCGAAACCCGGAAACCC-GAAACCGAAACCGAAAACCGAAACCG
119 AAACCCG-AACCC-GAAACCCGGAAA-CG--CCCGGAAACCG-AACCG
*
1419868 AAACCCTGAAACCCGAAACCCGAAACCCTGAAAC-CCGAAACCCG-AACCCG-ACACCC---TAA
1 AAACCC-GAAACCCGAAACCCG-AACCC-GAAACTCCGAAACCCGAAACCCGAAAACCCGAATAA
* * * *
1419927 ACCTCTGTAAACCCGAACAACCCGAAACCCGACACCCGAAACCGAAAAACCCG-AAACCCGCAAC
63 A-C-C-GAAAACCCGAA-AACCCGAAACCCGAAACCCGAAACC-AGAAACCCGAAAACCCGAAAC
* **
1419991 CCGAAAACCC-AAA-CCTGAAAC-CCTAAGAAACCTCGATAACCCG
123 CCG--AACCCGAAACCCGGAAACGCC-CGGAAA-C-CG--AA-CCG
* * *
1420034 AAACCCGAAAACCCGAACCTCCGGCGAAAACCGAAAC-CCGAAACCCGAAA-CCG-AAACCCTAA
1 AAACCCG-AAACCCGAA--ACC--CG-AACCCGAAACTCCGAAACCCGAAACCCGAAAACCCGAA
* * *
1420096 CT--CCCG-AAA-CCGAAAACCCGAAAACCCGAAACCCGAACCCGTGAAACCCG-AAACCCGGGG
60 -TAAACCGAAAACCCGAAAACCCG-AAACCCGAAACCCGAAACC-AGAAACCCGAAAACCC---G
1420156 AAACCCGAAAACTCCGAACACCC-GAAA--CCC-GAAACTCGAAAAACCCGG
119 AAACCCG--AAC-CCGAA-ACCCGGAAACGCCCGGAAAC-CG---AA-CC-G
* *
1420204 AAAAACCCGGAAACCTCGGACACCCGAAAACCCTAAAC-CCGAAACCCCGAGAAACCCGTAAAAC
1 --AAACCC-GAAACC-C-GAAACCCG--AACCCGAAACTCCGAAA-CCC--GAAACCCG-AAAAC
*
1420268 TCCGAACCCGTAAACCG-AAACCCGGAAAACCCGAAACCCGAAA-CCGAAACCCG-AACCCG-AA
55 -CCGAA----TAAACCGAAAACCC-GAAAACCCGAAACCCGAAACCCGAAACCAGAAACCCGAAA
* * *
1420329 A-CCGAAAACCGAAACCGAAAACCC-TAAA--CCC-GAAACCGAAACCCG
114 ACCCGAAACCCGAACCCG-AAACCCGGAAACGCCCGGAAACCG-AA-CCG
* * *
1420374 AATAACCCGAAAACCGAAAAACCCGAA-CCGAAAACCCCGAAACCCGACGGAAACCCG-TAACAC
1 -A-AACCCGAAACCCG--AAACCCGAACCCG-AAACTCCGAAA-CC--C-GAAACCCGAAAAC-C
* * * *
1420437 CG--CAACCCG-AAACCCGAAAACCCTGTAAACCCGAAAACCCCGAAACCCGAAACCCG-CAACC
56 CGAATAAACCGAAAACCCGAAAACCC-G-AAACCCG-AAA-CCCGAAACCAGAAACCCGAAAACC
1420498 CTGAAACTCCGAAACCCGATAACCC-GAAA--CCCGGAAAAACCCGAAACCCG
117 C-GAAAC-CCG-AACCCGA-AACCCGGAAACGCCCGG--AAA-CCG-AA-CCG
1420548 AAACCCGAAACCCGAAAAACCCGAAACCCGAACAC-CCTGATAACCCGAAACCCG-AAACCCGAA
1 AAACCCGAAACCCG--AAACCCG-AACCCGAA-ACTCC-GA-AACCCGAAACCCGAAAACCCGAA
* * *
1420611 TAACCCCG-AAACCCTGAAAACCCGGAGAAACCG-AA--CGCAACC-GAATCACCCG-AAACCCG
60 TAA-ACCGAAAACCC-GAAAACCC-GA-AACCCGAAACCCGAAACCAGAA--ACCCGAAAACCC-
* * *
1420670 GAATCCCCGAAACCCTCG-CACCCGAAAAC-CCC-GAAA-C---CCG
118 GAA-ACCCG-AA-CC-CGAAACCCGGAAACGCCCGGAAACCGAACCG
* * * * *
1420710 AAACCCGAAA-CCGACAACCCGATAACCGAAACT-GGAACCCCGAAA-CCGGAAACCCGAACCGA
1 AAACCCGAAACCCGA-AACCCGA-ACCCGAAACTCCGAAACCCGAAACCCGAAAACCCGAA--TA
* *
1420772 AACCGAAAACCCGATAAACCCGAAACCCGTAAACCCGAAAACCCGAAACCC-AAAAACCG-AACC
62 AACCGAAAACCCGA-AAACCCGAAACCCG-AAACCCG-AAACCAGAAACCCGAAAACCCGAAACC
* * *
1420835 CTATAACCCGGAAACTC-GAAA--CCC-GAAACCCGAAACCCT
124 C--GAACCC-GAAACCCGGAAACGCCCGGAAA-CCG-AA-CCG
*
1420874 AAACCCGAAACCCGAAAACCCGAAACCCGGGAAAC-CCGCAAACCAGGATAACCCG-AAACCCG-
1 AAACCCGAAACCCG-AAACCCG-AACCC--GAAACTCCG-AAACC-CGA-AACCCGAAAACCCGA
* * *
1420936 -TACACCCAACCCGAACCCGGATAACCACACCCG-AACCCGAAA-CCGAATACCCCGAAATCCCG
59 ATAAACCGAA----AACCC-G--AA--A-ACCCGAAACCCGAAACCCGAA-A-CCAGAAA-CCCG
*
1420998 AAAACCCGAAACCCGAAAACCCGAATACCC-GACAC-CTCC-GAAA-C---CCG
111 AAAACCCGAAACCCG--AACCCGAA-ACCCGGAAACGC-CCGGAAACCGAACCG
*
1421045 AAACCCCGAAACCCGAAACCCGAAACCC-TAACTCCAGAAAACTCCGAACACCCGAGAAACCC--
1 AAA-CCCGAAACCCGAAACCCG-AACCCGAAACTCC-G-AAAC-CCGAA-ACCCGA-AAACCCGA
* * ** * *
1421107 -TAACCCGGAAACCCGTCAA-CCGAAAAACCCG-AACCCGAAACCCGAAACCCGAAAA-CCTAAA
59 ATAAACCGAAAACCCGAAAACCCG--AAACCCGAAACCCGAAACCAGAAACCCGAAAACCCGAAA
* * * *
1421168 CACGAACCTGAAAAACCC-G--ACACCC-GAAACCCTAAACCCG
122 CCCGAACCCG--AAACCCGGAAACGCCCGGAAA-CC-GAA-CCG
** * *
1421208 AAACCCGAAACCCGTAAAAAC--ACGCC-AAACTCCGAAAATACCG-AACACCGAAACCCCTG-A
1 AAACCCGAAACCCG-AAACCCGAAC-CCGAAACTCCG-AAA-CCCGAAAC-CCGAAAACCC-GAA
*
1421268 -AACCCG-AAACCCGAACGAAACCCGATAACCCGAAACCCGAATTACCAGAAACCCG-AAACCCG
60 TAAACCGAAAACCCG-A--AAACCCGA-AACCCGAAACCCGAA--ACCAGAAACCCGAAAACCCG
*
1421330 AAACCCGAAACCCGCAATACCC-GAAA--CCC-GAAACCCTAAAACCCG
119 AAACCCG-AACCCG-AA-ACCCGGAAACGCCCGGAAA-CC--GAA-CCG
* * * *** *
1421375 ACACCCGAAACCCTAATACCCGAAAACCGAAAAC-CCGAAACCCGAAACTTTAAAATACCCG--G
1 AAACCCGAAACCCGAA-ACCCG-AACCCG-AAACTCCGAAACCCGAAAC-CCGAAA-ACCCGAAT
* * *
1421437 CACCCTG-ACACCCGAAAACCCGGAAAACCC--AACCCGAAACCAGAAAACCCCG-AAACCGCGA
61 AAACC-GAAAACCCGAAAACCC-G-AAACCCGAAACCCGAAACCAG-AAA-CCCGAAAACC-CGA
*
1421498 AACCCGCCAACCCGAAACCC-G-AAC-CCCGAAAACCGAAACCGG
120 AACCCG--AACCCGAAACCCGGAAACGCCCGGAAACCG-AACC-G
*
1421540 ATAACCCGAATGAAACCG-AACCCGAAACCCGTCTTAAAC-CCGAAAACCCAGAAACCCG-AAAC
1 A-AACCCG-A--AACCCGAAACCCG-AACCCG----AAACTCCG-AAACCC-GAAACCCGAAAAC
* * *
1421602 CCG-A-AACCCTGAAAA-CAG-AAACCCGAAATAACCCGAAACCCTTGTAAACCCGAAACCCGAA
55 CCGAATAAACC-GAAAACCCGAAAACCCG--A-AACCCGAAACCC--G-AAACCAGAAACCCGAA
* *
1421663 AACCCGGAAACCCGCAAAACCCGAAACCC-GAAAC-CCC-GACACCCGACCCG
113 AACCC-GAAACCCG---AACCCGAAACCCGGAAACGCCCGGA-AACCGAACCG
* * * *
1421713 TAAATCTCCGATAAATCCGGCAACCTCGAAACCTCGGAAC-CCGCAACCCGAAACCCG-AAACCC
1 -AAA-C-CCG--AAA-CCCGAAACC-CG-AACC-CGAAACTCCGAAACCCGAAACCCGAAAACCC
* * * *
1421776 G-A-CACCTCGAAAACCCTGGAAACCCGTAAAACCCTGAAATACTCCTGCAAACCCCGAAATAAC
57 GAATAAAC-CGAAAACCC-GAAAACCCG--AAACCC-G-AA-AC-CC-G-AAA--CC-AGA-AAC
*
1421839 CCG-AAA-CCGAAACCCGCCACCCGAGTATACCCGTG-AAC-CCC-GAAACCCGAAATCCCG
108 CCGAAAACCCGAAACCCG-AACCCGA--A-ACCCG-GAAACGCCCGGAAA-CCG-AA--CCG
*
1421896 AAACCCGAAACCCGAAACCCGAAACCCGAAAC-CTCGAAACCCGAAACCCG-AAACCAG-ATAAC
1 AAACCCGAAACCCGAAACCCG-AACCCGAAACTC-CGAAACCCGAAACCCGAAAACCCGAATAA-
* * * * * *
1421958 CCCGAAAACCCGGAAAAACCCGGAACCCGAAACCCGCAACCCTATAACCCTCG-AAACCCGACAC
63 ACCGAAAACCC-G-AAAACCCGAAACCCGAAACCCG-AAACC-AGAAACC-CGAAAACCCGAAAC
*
1422022 CCGAAAACCCGCAAACCCGGAAAC-CCGATGGAAACCCGAACCG
123 CCG--AACCCG-AAACCCGGAAACGCC--CGGAAA-CCGAACCG
* * * * * *
1422065 -AA---GAAACCCGAAAACCCGAAACCGAAAACACCGATACCCGCAACCCG-AAA-CCGGA-AAC
1 AAACCCGAAACCCG-AAACCCGAACCCG-AAACTCCGAAACCCGAAACCCGAAAACCCGAATAAA
* *
1422123 CCG-AAACCCG-AAACCCGCAACCCG-AACCCGAAACCCGAAACCCG--AACCCGAAACCCGAAA
64 CCGAAAACCCGAAAACCCGAAACCCGAAACCCGAAACCAGAAACCCGAAAACCCGAAACCCG-AA
* *
1422183 CCCCGAAACCCGGAATA--CCC-GAAAAC--TCCG
128 -CCCGAAACCCGGAA-ACGCCCGGAAACCGAACCG
* * ** * **
1422213 --A---TAAACCCGAAACCCGCACCC----CTGAGGGAA----AAACCCGAAAACCCGAATACCC
1 AAACCCGAAACCCGAAACCCGAACCCGAAACT-CCGAAACCCGAAACCCGAAAACCCGAATAAAC
* * *
1422265 CGAAAACCCGAAAACCCGACACCCGAAACCCGAAACCCGAAACCCGAAATCCCGAAACCCGAACC
65 CGAAAACCCGAAAACCCGAAACCCGAAACCCGAAACCAGAAACCCGAAAACCCGAAACCCGAACC
1422330 CGAAACCCGGAAACGCCCGGAAACCCGAACCG
130 CGAAACCCGGAAACGCCCGGAAA-CCGAACCG
*
1422362 AAACCCGAAACCTGAAACCCGAACCCGAAACTCCGAAACCCGAAACCCGACAAACCCGTAA-AAA
1 AAACCCGAAACCCGAAACCCGAACCCGAAACTCCGAAACCCGAAACCCGA-AAACCCG-AATAAA
* *
1422426 CCGAAAACCTC-TAAACCCGAAACCCGAAACCCGGAAACCAGAAA-CCTAAAACCCGAAA-CCGA
64 CCGAAAACC-CGAAAACCCGAAACCCGAAACCC-GAAACCAGAAACCCGAAAACCCGAAACCCG-
*
1422488 AACCCGAAACCCGGAAA-TCCC-GAAA-CGAAACCCG
126 AACCCGAAACCCGGAAACGCCCGGAAACCG-AA-CCG
* * *
1422522 AAACCCGTAA----AAACCCGAACCCGAAAACT---ACACCCTGAAA----AAAACCC-TA-AAA
1 AAACCCGAAACCCGAAACCCGAACCCG-AAACTCCGAAACCC-GAAACCCGAAAACCCGAATAAA
* *
1422574 CCAGGAAACCCGAAAACCCGGACAACCCGAATAACCCTGAAACCCGAAA-CCGAAAACCCGAAAC
64 CC-GAAAACCCGAAAACCC-GA-AACCCG-A-AACCC-GAAACCAGAAACCCGAAAACCCGAAAC
* * *
1422638 CCGCAACCCGTAAACCC-TAAA--CCCGAAAACCCGAA--A
123 CCG-AACCCG-AAACCCGGAAACGCCCGGAAA-CCGAACCG
* *
1422674 AAACCCTGACACCCGAAACCCGAA-CCGAAAC-CCTAAACC
1 AAACCC-GAAACCCGAAACCCGAACCCGAAACTCCGAAACC
1422713 TAAAACCTAA
Statistics
Matches: 3726, Mismatches: 379, Indels: 1125
0.71 0.07 0.22
Matches are distributed among these distances:
138 6 0.00
139 3 0.00
140 4 0.00
141 6 0.00
142 9 0.00
143 13 0.00
144 34 0.01
145 5 0.00
146 26 0.01
147 19 0.01
148 28 0.01
149 40 0.01
150 22 0.01
151 25 0.01
152 38 0.01
153 48 0.01
154 88 0.02
155 60 0.02
156 57 0.02
157 97 0.03
158 65 0.02
159 120 0.03
160 147 0.04
161 132 0.04
162 192 0.05
163 107 0.03
164 100 0.03
165 130 0.03
166 256 0.07
167 222 0.06
168 140 0.04
169 249 0.07
170 195 0.05
171 139 0.04
172 192 0.05
173 133 0.04
174 148 0.04
175 78 0.02
176 71 0.02
177 58 0.02
178 42 0.01
179 33 0.01
180 40 0.01
181 36 0.01
182 31 0.01
183 21 0.01
184 12 0.00
185 9 0.00
ACGTcount: A:0.41, C:0.40, G:0.14, T:0.04
Consensus pattern (160 bp):
AAACCCGAAACCCGAAACCCGAACCCGAAACTCCGAAACCCGAAACCCGAAAACCCGAATAAACC
GAAAACCCGAAAACCCGAAACCCGAAACCCGAAACCAGAAACCCGAAAACCCGAAACCCGAACCC
GAAACCCGGAAACGCCCGGAAACCGAACCG
Found at i:1423081 original size:81 final size:81
Alignment explanation
Indices: 1422774--1424656 Score: 950
Period size: 79 Copynumber: 23.7 Consensus size: 81
1422764 CCTAAACCCT
* * * * *
1422774 AAACCGTACACCCTGAAACCCTAAAACCCTAAACCCTAAACCTAAAACCTAAATCCCTAAAACCC
1 AAACC-TAAACCCT-AAACCCTAAAAACCTTAACCCTAAACCTAAACCCTAAAACCCTAAAACCC
1422839 TAAACCCTAAACCCT---
64 TAAACCCTAAACCCTAAA
* * * * *
1422854 AAACCTAAACCC-AAACCC--GAAACCCTAAACCTAAACCGAAACTCCT-CAACCCT--AACCCG
1 AAACCTAAACCCTAAACCCTAAAAACCTTAACCCTAAACCTAAAC-CCTAAAACCCTAAAACCC-
*
1422913 AAAAACCCTTAAACCCT--A
64 -TAAACCC-TAAACCCTAAA
* * *
1422931 AACCCTAAACCCTAAACCCTAAACTCCAACCTAAACCCTAACCCTAAA-CCTAAAA-CCTAACCA
1 AAACCTAAACCCTAAACCCTAAA----AACCTTAACCCTAAACCTAAACCCTAAAACCCTAA--A
*
1422994 ACCCCTAAACCCGTAAACTCTAAA
60 A-CCCTAAACCC-TAAACCCTAAA
*
1423018 AAACCTACAA-CCT-AA-CCTAAAAACCTTAACACTAAACCTAAACCCTATAAACCCTAAAACCC
1 AAACCTA-AACCCTAAACCCTAAAAACCTTAACCCTAAACCTAAACCCTA-AAACCCTAAAACCC
*
1423080 TAAACCCTAAACCCTAAT
64 TAAACCCTAAACCCTAAA
* *
1423098 AAACCTAAACCCTAAACCCTAAAAACC-TAACCCTTAAACCCT-AACCCTAATACCCT-CAACCC
1 AAACCTAAACCCTAAACCCTAAAAACCTTAACCC-TAAA-CCTAAACCCTAAAACCCTAAAACCC
*
1423160 TAAAACCCTAAA-CC--AT
64 T-AAACCCTAAACCCTAAA
* * * * * *
1423176 AAACCATAAACCCTAACCCCTAAAACCCTAAACCCTAACCCTCAAATAACCCTGACAACTCCTAC
1 AAACC-TAAACCCTAAACCCTAAAAACCTTAACCCTAAACCT---A-AACCCT-AAAAC-CCTAA
*
1423241 AA-CC-AAA-CCTAAACCTTAATCTA
59 AACCCTAAACCCTAAACCCTAA---A
* * * *
1423264 AACCCTAACCCCTAAACCCT---AA-CTAAACCCTAAACCACTAAACCCT-AAA-CC-GAAACCC
1 AAACCTAAACCCTAAACCCTAAAAACCTTAACCCTAAA-C-CTAAACCCTAAAACCCTAAAACCC
* *
1423322 TAAACCGATAAAACCT-AA
64 TAAACC-CTAAACCCTAAA
* * * *
1423340 ACACCGT-AACCCTAACACCCT-AAACCCTAAACCCTGAAACCTCTAACCCT-AAACCCTAAAAC
1 AAACC-TAAACCCTAA-ACCCTAAAAACCTTAACCCT-AAACCT-AAACCCTAAAACCCTAAAAC
1423402 CCT-AACCCTAAACCCT--A
62 CCTAAACCCTAAACCCTAAA
* * * * *
1423419 AACCCTAAACCCTAAACCCT-TAACCCCTAACACTAAACCCTAAACCCTACTAAACCCT--AACC
1 AAACCTAAACCCTAAACCCTAAAAACCTTAACCCTAAA-CCTAAACCCTA--AAACCCTAAAACC
1423481 CTACAACCCTAAACCCT---
63 CTA-AACCCTAAACCCTAAA
* * *
1423498 AACCCTAAACCCTAAACCCT-AAAACCCT-A--C-AACCCTAAAACCCT--AA-CCT-AAACCCT
1 AAACCTAAACCCTAAACCCTAAAAACCTTAACCCTAAACCT-AAACCCTAAAACCCTAAAACCCT
*
1423554 AAACCCTAAA-CCT--T
65 AAACCCTAAACCCTAAA
**
1423568 AAACCTAAACCC-AAACCCTAAACCAACCCTTAAACCCT--ACCT-AACCCTCTAACCCTAAATC
1 AAACCTAAACCCTAAACCCTAAA--AA-CCTT-AACCCTAAACCTAAACCCTAAAACCCTAAA--
1423629 TACCGCTAAACCCTCCCAAACCCT--A
60 -ACC-CTAAACCCT---AAACCCTAAA
* *
1423654 AACCGCTAAACCCTAAACCCT--AAACCTAAACCCTAAAACCCTAAACCCCTAAAACCCT--AAC
1 AAAC-CTAAACCCTAAACCCTAAAAACCTTAACCCT-AAA-CCTAAA-CCCTAAAACCCTAAAAC
1423715 CCT-AACCCTAAACCCTAAAA
62 CCTAAACCCTAAACCCT-AAA
* *
1423735 CCTAAACCCAAACCCTAAAACCCTAAAACCCTTAAACCCTAACACCCTAAACCCTATAAA-CCT-
1 ---AAACCTAAACCCT-AAACCCTAAAAACCTT-AACCCTAA-A-CCTAAACCCTA-AAACCCTA
1423798 AAACCCTAAA-CCTAAA-CCTAAA
58 AAACCCTAAACCCTAAACCCTAAA
** * * * * *
1423820 ACCCCATAACACCCTAAACCCTCTAAACCCTAAACCCTTAAAACCCTAAACCCT-AACCCCTATA
1 AAACC-TAA-ACCCTAAACCCT-AAAAACCTTAACCC-T-AAA-CCTAAACCCTAAAACCCTAAA
1423884 ACCCTAAACCCTAAACCCT--A
60 ACCCTAAACCCTAAACCCTAAA
* * * * *
1423904 AACCCTTAA-CC--AACCCTCAACAACCCTAA-AC-AAACCCT-AA-CCT-AAA-CCT--AACCC
1 AAACCTAAACCCTAAACCCT-AAAAACCTTAACCCTAAA-CCTAAACCCTAAAACCCTAAAACCC
*
1423958 TTAAAACCTTAAA-CCT--A
64 -T-AAACCCTAAACCCTAAA
* * * *
1423975 AACCCTAAAACCCTGAAA-CCT-AAACCCTTAACCC-ACACCCTAAACCCTTAAACCCT-AAACC
1 AAACCT-AAACCCT-AAACCCTAAAAACCTTAACCCTA-AACCTAAACCCTAAAACCCTAAAACC
1424036 CTAAACCACTAAACCCTAAA
63 CTAAACC-CTAAACCCTAAA
* * * * *
1424056 AACCCTAAA-CCTAAACCCT-AATACCCTAAACCTCAAACCCTAAACCCT-AAACCCTTAAACCC
1 AAACCTAAACCCTAAACCCTAAAAACCTTAACCCT-AAA-CCTAAACCCTAAAACCCTAAAACCC
1424118 TTAAACCCTAAACCCT-AA
64 -TAAACCCTAAACCCTAAA
* * * *
1424136 CACCCTAAACCC--ACCCCTAAAAACCCCTAAAACCCTAAACCCTAAACCCT-AAACCCT--AAC
1 AAACCTAAACCCTAAACCCTAAAAA--CCT-TAACCCTAAA-CCTAAACCCTAAAACCCTAAAAC
*
1424196 CCTAAACCCTAAACCCT-AC
62 CCTAAACCCTAAACCCTAAA
* * * *
1424215 AACCCTAAACCCTAAACCCT-AACACC-TAAACCTAACCCTAAAACCCT--AA-CCTAAAACCCT
1 AAACCTAAACCCTAAACCCTAAAAACCTTAACCCTAAACCT-AAACCCTAAAACCCTAAAACCCT
1424275 AAACCCTAAACCCCT--A
65 AAACCCTAAA-CCCTAAA
* * * * *
1424291 AACCCTAAACCCTTAAACCCTTAAACCCCTAACCCTAAACCCTAAACCC--AAACCCTAAACCCC
1 AAACCTAAACCC-TAAACCCTAAAAACCTTAACCCTAAA-CCTAAACCCTAAAACCCTAAAACCC
1424354 TTAAACCC-AAACCCTAAA
64 -TAAACCCTAAACCCTAAA
* *
1424372 CCCTAAACCCTAAACCCTAAACCCT--AAACCTAAAACCCTCAACCCT-AACCCT-AAACCCT-A
1 ----AAA-CCTAAACCCTAAACCCTAAAAACCT-TAACCCT-AAACCTAAACCCTAAAACCCTAA
1424432 AACCCTAAA-CCTAAACCCT---
59 AACCCTAAACCCTAAACCCTAAA
* *
1424451 AAACCTAAACCCTAAACCCT-AAACCCTAAACCCTTAAAACCTAAAAACCCTAAAA-CCT-AAAC
1 AAACCTAAACCCTAAACCCTAAAAACCTTAACCC-T-AAACCT--AAACCCTAAAACCCTAAAAC
1424513 CCTAAACCCTAAACCCT---
62 CCTAAACCCTAAACCCTAAA
* * *
1424530 AAACCTCAACCCTAAACCC--AAACCCTAAACCCTAAACCCTAAACCCTAAAACCCT--AACCCT
1 AAACCTAAACCCTAAACCCTAAAAACCTTAACCCTAAA-CCTAAACCCTAAAACCCTAAAACCCT
1424591 -AA-CCTAAACCCT--A
65 AAACCCTAAACCCTAAA
* * *
1424604 AACCCT-AACCCT-AACCCT-AAACCCTTAAACCC-AAACCCTGAACCCTAACAACC
1 AAACCTAAACCCTAAACCCTAAAAACCTT-AACCCTAAA-CCTAAACCCTAA-AACC
1424657 TGAACCCTGA
Statistics
Matches: 1473, Mismatches: 141, Indels: 384
0.74 0.07 0.19
Matches are distributed among these distances:
69 10 0.01
70 30 0.02
71 20 0.01
72 21 0.01
73 60 0.04
74 58 0.04
75 87 0.06
76 83 0.06
77 64 0.04
78 104 0.07
79 195 0.13
80 137 0.09
81 128 0.09
82 110 0.07
83 81 0.05
84 93 0.06
85 54 0.04
86 48 0.03
87 65 0.04
88 25 0.02
ACGTcount: A:0.43, C:0.41, G:0.01, T:0.15
Consensus pattern (81 bp):
AAACCTAAACCCTAAACCCTAAAAACCTTAACCCTAAACCTAAACCCTAAAACCCTAAAACCCTA
AACCCTAAACCCTAAA
Found at i:1425738 original size:21 final size:21
Alignment explanation
Indices: 1425477--1425767 Score: 124
Period size: 21 Copynumber: 14.0 Consensus size: 21
1425467 ATCCCCAAAC
* * *
1425477 CCCAAACCCCAAACCCCAAAC
1 CCCAAACCTCAAACCCTAAAA
*
1425498 CCCAAACCCCAAACCC-ACAAA
1 CCCAAACCTCAAACCCTA-AAA
* *
1425519 CCCCAAAAC-CAAACCC--GAA
1 -CCCAAACCTCAAACCCTAAAA
* *
1425538 CCCGAAACCCCCAAACCCCAAAA
1 CCC-AAA-CCTCAAACCCTAAAA
*
1425561 CCCCAAAACC-CAAACCCCAAAAA
1 -CCC-AAACCTCAAA-CCCTAAAA
* *
1425584 CCCAAAACCCCAAACCC-CAAA
1 CCC-AAACCTCAAACCCTAAAA
* *
1425605 CCCAAACCCCAAACCC-AAAC
1 CCCAAACCTCAAACCCTAAAA
*
1425625 CCCAAACC-CTAAACCC-CAAA
1 CCCAAACCTC-AAACCCTAAAA
* * *
1425645 CCCTAAACCCCAAAACCCCAAAC
1 CCC-AAACCTC-AAACCCTAAAA
* * * *
1425668 CCCGAACCCCGAACCC--GAA
1 CCCAAACCTCAAACCCTAAAA
* * *
1425687 CCCGAACCCCCAAACCCTAAAC
1 CCC-AAACCTCAAACCCTAAAA
*
1425709 CCCAAACCTCAAATCCTAAAA
1 CCCAAACCTCAAACCCTAAAA
*
1425730 CCCAAACCT-TAACCCT-AAA
1 CCCAAACCTCAAACCCTAAAA
* *
1425749 CCTAAACC-CTAACCCTAAA
1 CCCAAACCTCAAACCCTAAA
1425768 CCCTTAACCC
Statistics
Matches: 220, Mismatches: 31, Indels: 39
0.76 0.11 0.13
Matches are distributed among these distances:
18 3 0.01
19 27 0.12
20 53 0.24
21 71 0.32
22 40 0.18
23 20 0.09
24 6 0.03
ACGTcount: A:0.44, C:0.50, G:0.02, T:0.04
Consensus pattern (21 bp):
CCCAAACCTCAAACCCTAAAA
Found at i:1425751 original size:13 final size:13
Alignment explanation
Indices: 1425698--1425776 Score: 72
Period size: 13 Copynumber: 5.9 Consensus size: 13
1425688 CCGAACCCCC
*
1425698 AAACCCTAAACCCC
1 AAACCCTAAA-CCT
1425712 AAA-CCTCAAATCCT
1 AAACCCT-AAA-CCT
1425726 AAAACCC-AAACCT
1 -AAACCCTAAACCT
*
1425739 TAACCCTAAACCT
1 AAACCCTAAACCT
*
1425752 AAACCCTAACCCT
1 AAACCCTAAACCT
*
1425765 AAACCCTTAACC
1 AAACCCTAAACC
1425777 CCTATCCTTA
Statistics
Matches: 54, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
12 5 0.09
13 33 0.61
14 11 0.20
15 3 0.06
16 2 0.04
ACGTcount: A:0.43, C:0.42, G:0.00, T:0.15
Consensus pattern (13 bp):
AAACCCTAAACCT
Done.