genome.fa.s2461.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2461
Parameters: 2 7 7 80 10 50 1000
Length:  61190

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
228--273	14	3.4	14	83	13	53	56	0	0	43	0.99
250--406	25	6.0	26	70	22	89	54	0	0	44	1.04
255--347	8	11.4	8	71	16	57	53	0	1	45	1.07
268--379	46	2.5	43	83	8	143	51	0	0	47	1.06
761--802	12	3.4	12	81	12	50	45	2	0	52	1.13
908--945	18	2.1	19	95	5	69	42	21	10	26	1.85
2332--2396	10	6.8	10	75	16	57	66	0	1	32	1.01
2332--2397	26	3.0	21	78	21	80	66	0	1	31	1.01
2332--2406	19	3.5	20	77	21	64	64	0	1	34	1.02
2987--3050	24	2.5	26	82	12	80	53	0	1	45	1.10
5993--6039	2	23.5	2	95	0	85	0	46	2	51	1.13
7237--7264	5	5.6	5	100	0	56	17	0	0	82	0.68
7504--7539	2	18.0	2	100	0	72	0	50	0	50	1.00
8496--8542	18	2.6	18	82	3	58	53	4	2	40	1.32
8745--8776	15	2.1	15	94	5	55	53	6	0	40	1.26
9110--9137	2	14.0	2	100	0	56	50	0	0	50	1.00
10473--10509	2	18.5	2	100	0	74	51	0	48	0	1.00
18417--18472	17	3.2	18	78	14	55	71	3	7	17	1.23
20611--20708	51	1.9	51	85	0	133	29	13	23	33	1.93
22063--22493	215	2.0	212	83	4	544	33	18	18	28	1.95
39375--39468	8	11.2	8	73	18	59	32	0	0	67	0.91
39375--39434	24	2.5	24	84	12	72	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39376--39491	16	7.3	16	67	21	57	33	0	0	66	0.92
39384--39485	42	2.4	41	81	13	118	34	0	0	65	0.93
39404--39484	22	3.8	22	74	14	62	35	0	0	64	0.94
39400--39474	32	2.3	32	84	9	98	36	0	0	64	0.94
39371--39486	42	2.8	40	75	15	108	34	0	0	65	0.93
39676--39733	28	2.0	30	83	12	77	50	0	0	50	1.00
39713--39747	16	2.1	17	89	5	54	51	0	0	48	1.00
41461--41501	10	4.4	9	85	14	57	31	4	0	63	1.15
42463--42508	20	2.3	21	81	11	60	47	2	4	45	1.34
42884--42958	30	2.5	32	80	10	86	45	2	8	44	1.47
42884--42958	31	2.5	31	80	6	82	45	2	8	44	1.47
43366--43413	22	2.2	22	85	7	62	52	0	0	47	1.00
43379--43420	22	2.0	21	90	9	68	47	0	0	52	1.00
43382--43432	22	2.3	21	83	12	59	49	0	0	50	1.00
43399--43489	23	4.0	22	73	21	73	47	0	1	51	1.07
43447--43492	16	2.6	18	76	10	51	50	0	0	50	1.00
43623--43689	29	2.4	27	76	20	66	55	0	1	43	1.09
43796--43846	20	2.6	20	84	9	70	31	0	0	68	0.90
43803--43853	19	2.5	20	84	12	68	31	0	0	68	0.90
44403--44479	37	2.1	37	85	2	102	55	0	0	44	0.99
44635--44867	119	2.0	117	93	1	394	27	18	30	22	1.98
45171--45209	6	6.8	6	91	8	64	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45171--45209	17	2.3	18	91	8	64	30	0	0	69	0.89
45335--45380	3	14.7	3	86	8	65	60	0	0	39	0.97
45383--45445	19	3.1	20	82	11	67	58	0	0	41	0.98
45453--45510	19	3.1	19	70	5	55	70	3	0	25	1.03
45690--45739	17	3.1	16	76	18	59	44	0	0	56	0.99
47066--47133	12	5.9	12	75	24	67	35	0	0	64	0.94
50748--50779	4	8.0	4	100	0	64	25	0	25	50	1.50
51415--51442	2	14.0	2	100	0	56	50	0	0	50	1.00
51737--51767	2	15.5	2	93	0	53	48	3	0	48	1.17
55792--55834	21	2.1	20	86	4	59	30	2	0	67	1.03
55801--55843	21	2.1	21	82	4	52	30	2	2	65	1.18
59468--59525	18	3.1	19	74	18	57	44	1	13	39	1.54
59956--59997	16	2.4	18	84	11	52	40	0	0	59	0.97

Tables:   1

The End!