Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold247
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4737410
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
File 24 of 29
Found at i:3779192 original size:20 final size:20
Alignment explanation
Indices: 3779149--3779195 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
3779139 AAATCTTTTG
3779149 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
3779170 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
3779190 CAAAAT
1 CAAAAT
3779196 CAGCATCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 6 0.26
21 9 0.39
22 8 0.35
ACGTcount: A:0.32, C:0.19, G:0.04, T:0.45
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:3781343 original size:13 final size:13
Alignment explanation
Indices: 3781325--3781350 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3781315 TACAGCAAGT
3781325 ATGTATCGATACA
1 ATGTATCGATACA
3781338 ATGTATCGATACA
1 ATGTATCGATACA
3781351 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3785500 original size:42 final size:42
Alignment explanation
Indices: 3785369--3785509 Score: 126
Period size: 42 Copynumber: 3.3 Consensus size: 42
3785359 CAATCAAGTT
** * *
3785369 AACAAAGGATAAAAGGCGTTACTTAGGACTAAGCCGATAGGTA
1 AACAAAGGATAAAAGGATTTACCTAGGACTAAGTCGATA-GTA
* * * * * * *
3785412 AATAAAGGATACAAA-GATTGA-CTGGGAGTGAACT-GACAAGTC
1 AACAAAGGATA-AAAGGATTTACCTAGGACT-AAGTCGA-TAGTA
3785454 AACAAAGGATAAAAGGATTTACCTAGGACTAAGTCGATAGTA
1 AACAAAGGATAAAAGGATTTACCTAGGACTAAGTCGATAGTA
3785496 AACAAAGGATAAAA
1 AACAAAGGATAAAA
3785510 AGGTTCATCA
Statistics
Matches: 74, Mismatches: 18, Indels: 13
0.70 0.17 0.12
Matches are distributed among these distances:
41 3 0.04
42 44 0.59
43 24 0.32
44 3 0.04
ACGTcount: A:0.46, C:0.12, G:0.23, T:0.18
Consensus pattern (42 bp):
AACAAAGGATAAAAGGATTTACCTAGGACTAAGTCGATAGTA
Found at i:3785553 original size:85 final size:85
Alignment explanation
Indices: 3785363--3785551 Score: 222
Period size: 84 Copynumber: 2.2 Consensus size: 85
3785353 ACTAGCCAAT
* * * * *
3785363 CAAGTTAACAAAGGATAAAAGGCGTTACTTAGGACTAAGCCGATAGGTAAATAAAGGATACAAAG
1 CAAGTCAACAAAGGATAAAAGGAGTTACCTAGGACTAAGCCGATAGGTAAACAAAGGATAAAAAG
* * **
3785428 ATTGACTGGGAGTGAACTGA
66 ATTCACTAGGAACGAACTGA
* *
3785448 CAAGTCAACAAAGGATAAAAGGATTTACCTAGGACTAAGTCGATA-GTAAACAAAGGATAAAAAG
1 CAAGTCAACAAAGGATAAAAGGAGTTACCTAGGACTAAGCCGATAGGTAAACAAAGGATAAAAAG
*
3785512 GTTCA-TCAGGAACGAACT-A
66 ATTCACT-AGGAACGAACTGA
*
3785531 GCAAGTCAATAAAGGATAAAA
1 -CAAGTCAACAAAGGATAAAA
3785552 AGTGACACCT
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
83 2 0.02
84 47 0.53
85 40 0.45
ACGTcount: A:0.46, C:0.13, G:0.23, T:0.19
Consensus pattern (85 bp):
CAAGTCAACAAAGGATAAAAGGAGTTACCTAGGACTAAGCCGATAGGTAAACAAAGGATAAAAAG
ATTCACTAGGAACGAACTGA
Found at i:3785797 original size:78 final size:78
Alignment explanation
Indices: 3785706--3785986 Score: 226
Period size: 78 Copynumber: 3.5 Consensus size: 78
3785696 AAATTATAGC
* *
3785706 AAAAAGGTTTGACCGAGGTAGAACCATCAAGTCAAATGAAAGTGAAAGAGTTTGACTATGTACAG
1 AAAAAAGTTTGACCGAGGTAGAACCATCAAGTCAAATGAAAGTGAAAGAGTTTGACTAGGTACAG
3785771 TCAAACGAAAATT
66 TCAAACGAAAATT
* * ** ** * *
3785784 AAAAAAGTTTGACCAAGGCTA-AACAATCACTTCAAATGGGAG-CAAATGAAGTTTGACCAAGGT
1 AAAAAAGTTTGACCGAGG-TAGAACCATCAAGTCAAATGAAAGTGAAA-G-AGTTTGA-CTAGGT
* ** * *
3785847 AAAACCATCACGTTAAATT
62 ACAGTCA-AACG-AAAATT
* *
3785866 ATAGCGAAAAGGGTTTGACTGAGGTAGAACCATCAAGTCAAATGAAAATGAAAGAGTTTGACTAG
1 A-A---AAAA--GTTTGACCGAGGTAGAACCATCAAGTCAAATGAAAGTGAAAGAGTTTGACTAG
* *
3785931 GTACAGTCAAACGAGAATG
60 GTACAGTCAAACGAAAATT
* *
3785950 AAAAGAGTTTGACC-AGGGTGAGAACCATCACGTCAAA
1 AAAAAAGTTTGACCGA-GGT-AGAACCATCAAGTCAAA
3785987 CAAGAATAAA
Statistics
Matches: 152, Mismatches: 35, Indels: 31
0.70 0.16 0.14
Matches are distributed among these distances:
77 4 0.03
78 43 0.28
79 25 0.16
80 11 0.07
81 3 0.02
82 6 0.04
83 2 0.01
84 4 0.03
85 3 0.02
86 13 0.09
87 9 0.06
88 26 0.17
89 3 0.02
ACGTcount: A:0.43, C:0.15, G:0.22, T:0.21
Consensus pattern (78 bp):
AAAAAAGTTTGACCGAGGTAGAACCATCAAGTCAAATGAAAGTGAAAGAGTTTGACTAGGTACAG
TCAAACGAAAATT
Found at i:3785833 original size:165 final size:166
Alignment explanation
Indices: 3785616--3785964 Score: 556
Period size: 166 Copynumber: 2.1 Consensus size: 166
3785606 TTGAACGAGG
* * * * *
3785616 ATGAAAAGAGTTTGACCAGGGTTAAACGATCACTTCAAATGGAAGTAAATGAAGTTTGTCCAAGG
1 ATGAAAAGAGTTTGACCAAGGCTAAACAATCACTTCAAATGGAAGCAAATGAAGTTTGACCAAGG
3785681 CAAAACCATCACGTCAAATTATAGC-AAAAAGGTTTGACCGAGGTAGAACCATCAAGTCAAATGA
66 CAAAACCATCACGTCAAATTATAGCGAAAAAGGTTTGACCGAGGTAGAACCATCAAGTCAAATGA
* *
3785745 AAGTGAAAGAGTTTGACTATGTACAGTCAAACGAAA
131 AAATGAAAGAGTTTGACTAGGTACAGTCAAACGAAA
* * *
3785781 ATTAAAAAAGTTTGACCAAGGCTAAACAATCACTTCAAATGGGAGCAAATGAAGTTTGACCAAGG
1 ATGAAAAGAGTTTGACCAAGGCTAAACAATCACTTCAAATGGAAGCAAATGAAGTTTGACCAAGG
* * * *
3785846 TAAAACCATCACGTTAAATTATAGCGAAAAGGGTTTGACTGAGGTAGAACCATCAAGTCAAATGA
66 CAAAACCATCACGTCAAATTATAGCGAAAAAGGTTTGACCGAGGTAGAACCATCAAGTCAAATGA
*
3785911 AAATGAAAGAGTTTGACTAGGTACAGTCAAACGAGA
131 AAATGAAAGAGTTTGACTAGGTACAGTCAAACGAAA
3785947 ATGAAAAGAGTTTGACCA
1 ATGAAAAGAGTTTGACCA
3785965 GGGTGAGAAC
Statistics
Matches: 166, Mismatches: 17, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
165 80 0.48
166 86 0.52
ACGTcount: A:0.42, C:0.15, G:0.21, T:0.22
Consensus pattern (166 bp):
ATGAAAAGAGTTTGACCAAGGCTAAACAATCACTTCAAATGGAAGCAAATGAAGTTTGACCAAGG
CAAAACCATCACGTCAAATTATAGCGAAAAAGGTTTGACCGAGGTAGAACCATCAAGTCAAATGA
AAATGAAAGAGTTTGACTAGGTACAGTCAAACGAAA
Found at i:3786002 original size:45 final size:45
Alignment explanation
Indices: 3785936--3786066 Score: 140
Period size: 45 Copynumber: 2.9 Consensus size: 45
3785926 ACTAGGTACA
* * **
3785936 GTCAAACGAGAATGAAAAGAGTTTGACCAGGGTGAGAACCATCAC
1 GTCAAACAAGAATGAAAAGAGTTTAACCAGGGCAAGAACCATCAC
*
3785981 GTCAAACAAGAAT-AAATAGAGTTTAACCAGGGCAAGAACCATCAT
1 GTCAAACAAGAATGAAA-AGAGTTTAACCAGGGCAAGAACCATCAC
* * * * * *
3786026 TTTAAATAGGAATGAAAA-AGTTTAACTAGGGCAAAAACCAT
1 GTCAAACAAGAATGAAAAGAGTTTAACCAGGGCAAGAACCAT
3786067 TACATTAAAT
Statistics
Matches: 73, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
44 24 0.33
45 46 0.63
46 3 0.04
ACGTcount: A:0.45, C:0.15, G:0.21, T:0.19
Consensus pattern (45 bp):
GTCAAACAAGAATGAAAAGAGTTTAACCAGGGCAAGAACCATCAC
Found at i:3786204 original size:35 final size:34
Alignment explanation
Indices: 3786121--3786213 Score: 96
Period size: 35 Copynumber: 2.6 Consensus size: 34
3786111 CATGTCAAAT
* * *
3786121 GAAAGCAAAAGAGTTTGACTAGGTACAGTTAAACA
1 GAAAG-AAAAGAGTTTGACTAGGCACAATCAAACA
* *
3786156 GAAATGAAAAGAGTTTGACTAGGCATAATCAAATA
1 GAAA-GAAAAGAGTTTGACTAGGCACAATCAAACA
* *
3786191 GGAAAGAATAGAGTTTAACTAGG
1 -GAAAGAAAAGAGTTTGACTAGG
3786214 GCGAGAATCA
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
35 44 0.90
36 5 0.10
ACGTcount: A:0.46, C:0.09, G:0.24, T:0.22
Consensus pattern (34 bp):
GAAAGAAAAGAGTTTGACTAGGCACAATCAAACA
Found at i:3789506 original size:13 final size:13
Alignment explanation
Indices: 3789487--3789525 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
3789477 ACTATTTATG
*
3789487 ATGTATCAATACA
1 ATGTATCGATACA
*
3789500 CTGTATCGATACA
1 ATGTATCGATACA
3789513 ATGTATCGATACA
1 ATGTATCGATACA
3789526 TGAATAGTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3789592 original size:21 final size:22
Alignment explanation
Indices: 3789535--3789614 Score: 108
Period size: 21 Copynumber: 3.6 Consensus size: 22
3789525 ATGAATAGTG
* *
3789535 ATGAACAGTGATTTTTAACGATAC
1 ATGAACAGTGA--TGTATCGATAC
3789559 ATGAACAGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
*
3789581 ATGAA-GGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
3789602 ATGAACAGTGATG
1 ATGAACAGTGATG
3789615 AATAGTGATG
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
21 20 0.39
22 20 0.39
24 11 0.22
ACGTcount: A:0.36, C:0.11, G:0.24, T:0.29
Consensus pattern (22 bp):
ATGAACAGTGATGTATCGATAC
Found at i:3789621 original size:10 final size:10
Alignment explanation
Indices: 3789602--3789632 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
3789592 GTATCGATAC
3789602 ATGAACAGTG
1 ATGAACAGTG
*
3789612 ATGAATAGTG
1 ATGAACAGTG
3789622 ATGAACAGTG
1 ATGAACAGTG
3789632 A
1 A
3789633 AAATGAGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.42, C:0.06, G:0.29, T:0.23
Consensus pattern (10 bp):
ATGAACAGTG
Found at i:3789720 original size:53 final size:53
Alignment explanation
Indices: 3789656--3789792 Score: 238
Period size: 53 Copynumber: 2.6 Consensus size: 53
3789646 CTACTACCAA
*
3789656 TGTATCGATACATATTTTGTGTATCAATACAAATTTGGCTACTGCCAATGACC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
* *
3789709 TGTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTGCCAATGTCC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
3789762 TGTATCGATACATATTTGTGTGTATCGATAC
1 TGTATCGATACATATTT-TGTGTATCGATAC
3789793 TATGCAATTT
Statistics
Matches: 79, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
53 66 0.84
54 13 0.16
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.37
Consensus pattern (53 bp):
TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
Found at i:3789825 original size:20 final size:20
Alignment explanation
Indices: 3789762--3789832 Score: 74
Period size: 20 Copynumber: 3.5 Consensus size: 20
3789752 GCCAATGTCC
**
3789762 TGTATCGATACATATTTGTG
1 TGTATCGATACATATTAATG
* *
3789782 TGTATCGATAC-TATGCAATT
1 TGTATCGATACATAT-TAATG
3789802 TGTATCGATACAT-TTAAATG
1 TGTATCGATACATATT-AATG
3789822 TGTATCGATAC
1 TGTATCGATAC
3789833 TTTTCAGGGT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
19 3 0.07
20 38 0.90
21 1 0.02
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.41
Consensus pattern (20 bp):
TGTATCGATACATATTAATG
Found at i:3791560 original size:45 final size:45
Alignment explanation
Indices: 3791480--3791638 Score: 183
Period size: 45 Copynumber: 3.5 Consensus size: 45
3791470 AGGTATAGTT
* * * *
3791480 AAACGAGAATTAAAAAAGTTTGACCAGGGCAAGAACCATCATGTT
1 AAACGGGAATGAAAAGAGTTTGACCAGGGCAAGAACCATCATGTC
* * * **
3791525 ATATGGGAATGAAAAGGGTTTGACCAGGGTGAGAACCATCATGTC
1 AAACGGGAATGAAAAGAGTTTGACCAGGGCAAGAACCATCATGTC
* * **
3791570 AAACGGGAATGGAAAGAGTTTGACCAGGGCAAAAACCATCACATC
1 AAACGGGAATGAAAAGAGTTTGACCAGGGCAAGAACCATCATGTC
* *
3791615 AAATGGGAATAAAAAGAGTTTGAC
1 AAACGGGAATGAAAAGAGTTTGAC
3791639 TTGGTATAGT
Statistics
Matches: 93, Mismatches: 21, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 93 1.00
ACGTcount: A:0.42, C:0.14, G:0.25, T:0.19
Consensus pattern (45 bp):
AAACGGGAATGAAAAGAGTTTGACCAGGGCAAGAACCATCATGTC
Found at i:3791709 original size:80 final size:80
Alignment explanation
Indices: 3791575--3792012 Score: 368
Period size: 81 Copynumber: 5.5 Consensus size: 80
3791565 ATGTCAAACG
* * * * * *
3791575 GGAATGGAAAGAGTTTGACCAGGGCAAAAACCATCACATCAAATGGGAAT-AAAAAGAGTTTGAC
1 GGAATGAAAAGAGTTTGACCAAGGCGAGAACCATCACGTCAAATGGTAATGAAAAAGAGTTTGAC
*
3791639 TTGGTATAGTCAAAT
66 TAGGTATAGTCAAAT
* * *
3791654 AGAAATGAAAAGAGTTTGACCAAGGCGAGATCCATCATGTCAAAT-GTAATGAAAAA-AGTTTGA
1 -GGAATGAAAAGAGTTTGACCAAGGCGAGAACCATCACGTCAAATGGTAATGAAAAAGAGTTTGA
* * * *
3791717 CCAAGTACAATCAAAT
65 CTAGGTATAGTCAAAT
* * * *
3791733 GGGAATGAAAAGATGTTTGACCAGGGTGAGAACCTTCATGTCAAATGGTAATGGAAAAAG-GTTT
1 -GGAATGAAAAGA-GTTTGACCAAGGCGAGAACCATCACGTCAAATGGTAAT-GAAAAAGAGTTT
*
3791797 GACTAGGTA-AG--GAAT
63 GACTAGGTATAGTCAAAT
* * * * *
3791812 -GAA--AAAA-TGTTTGA-CTAGTGCGAAAACTATCACGTCAAATGGTAATGAAAAA-AGTTTAA
1 GGAATGAAAAGAGTTTGACCAAG-GCGAGAACCATCACGTCAAATGGTAATGAAAAAGAGTTTGA
*
3791871 TTAGGTATAGTCAAACT
65 CTAGGTATAGTCAAA-T
*
3791888 GGAATGAAAAGATGTTTGACCAAGGCGAGAACCATCACGTCAAATGGTAATG-AATAGAGTTTGA
1 GGAATGAAAAGA-GTTTGACCAAGGCGAGAACCATCACGTCAAATGGTAATGAAAAAGAGTTTGA
* * *
3791952 -TCAGGTACAATCAAACG
65 CT-AGGTATAGTCAAA-T
* * * *
3791969 GGAATGAAAAGATATTTGATCAGGGTGAGAACCATC-CTGTCAAA
1 GGAATGAAAAGA-GTTTGACCAAGGCGAGAACCATCAC-GTCAAA
3792013 CAATAATGAA
Statistics
Matches: 290, Mismatches: 48, Indels: 39
0.77 0.13 0.10
Matches are distributed among these distances:
72 19 0.07
73 30 0.10
75 6 0.02
76 1 0.00
77 6 0.02
79 40 0.14
80 74 0.26
81 94 0.32
82 20 0.07
ACGTcount: A:0.41, C:0.12, G:0.24, T:0.23
Consensus pattern (80 bp):
GGAATGAAAAGAGTTTGACCAAGGCGAGAACCATCACGTCAAATGGTAATGAAAAAGAGTTTGAC
TAGGTATAGTCAAAT
Found at i:3791996 original size:235 final size:233
Alignment explanation
Indices: 3791587--3792012 Score: 615
Period size: 235 Copynumber: 1.8 Consensus size: 233
3791577 AATGGAAAGA
*
3791587 GTTTGACCAGGGCAAAAACCATCACATCAAATGGGAATAAAAAGAGTTTGACTTGGTATAGTCAA
1 GTTTGACCAGGGCAAAAACCATCACATCAAATGGGAATAAAAAGAGTTTGAATTGGTATAGTCAA
* *
3791652 ATAGAAATGAAAAGAGTTTGACCAAGGCGAGATCCATCATGTCAAATGTAATGAAAAAAGTTTGA
66 ATAGAAATGAAAAGAGTTTGACCAAGGCGAGAACCATCACGTCAAATGTAATGAAAAAAGTTTGA
* * *
3791717 CCAAGTACAATCAAATGGGAATGAAAAGATGTTTGACCAGGGTGAGAACCTTCATGTCAAATGGT
131 CCAAGTACAATCAAACGGGAATGAAAAGATATTTGACCAGGGTGAGAACCATCATGTCAAATGGT
3791782 AATGGAAAAAGGTTTGACTAGGTAAGGAATGAAAAAAT
196 AATGGAAAAAGGTTTGACTAGGTAAGGAATGAAAAAAT
* * * * * *
3791820 GTTTGACTAGTGCGAAAACTATCACGTCAAATGGTAATGAAAAA-AGTTT-AATTAGGTATAGTC
1 GTTTGACCAGGGCAAAAACCATCACATCAAATGGGAAT-AAAAAGAGTTTGAATT-GGTATAGTC
* * *
3791883 AAACT-GGAATGAAAAGATGTTTGACCAAGGCGAGAACCATCACGTCAAATGGTAATGAATAGAG
64 AAA-TAGAAATGAAAAGA-GTTTGACCAAGGCGAGAACCATCACGTCAAAT-GTAATGAAAAAAG
* * * *
3791947 TTTGATCAGGTACAATCAAACGGGAATGAAAAGATATTTGATCAGGGTGAGAACCATCCTGTCAA
126 TTTGACCAAGTACAATCAAACGGGAATGAAAAGATATTTGACCAGGGTGAGAACCATCATGTCAA
3792012 A
191 A
3792013 CAATAATGAA
Statistics
Matches: 169, Mismatches: 19, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
232 3 0.02
233 60 0.36
234 36 0.21
235 70 0.41
ACGTcount: A:0.41, C:0.13, G:0.23, T:0.23
Consensus pattern (233 bp):
GTTTGACCAGGGCAAAAACCATCACATCAAATGGGAATAAAAAGAGTTTGAATTGGTATAGTCAA
ATAGAAATGAAAAGAGTTTGACCAAGGCGAGAACCATCACGTCAAATGTAATGAAAAAAGTTTGA
CCAAGTACAATCAAACGGGAATGAAAAGATATTTGACCAGGGTGAGAACCATCATGTCAAATGGT
AATGGAAAAAGGTTTGACTAGGTAAGGAATGAAAAAAT
Found at i:3792020 original size:81 final size:81
Alignment explanation
Indices: 3791807--3792038 Score: 207
Period size: 81 Copynumber: 2.9 Consensus size: 81
3791797 GACTAGGTAA
* * * * * ***
3791807 GGAATGAAAAAATGTTTGA-CTAGTGCGAAAACTATCACGTCAAATGGTAATGAAAAAAGTTTAA
1 GGAATGAAAAGATATTTGACCAAG-GCGAGAACCATCACGTCAAACAATAATGAAAAAAGTTTAA
* * * *
3791871 TTAGGTATAGTCAAACT
65 TCAGGTACAATCAAACG
* *** * * *
3791888 GGAATGAAAAGATGTTTGACCAAGGCGAGAACCATCACGTCAAATGGTAATGAATAGAGTTTGAT
1 GGAATGAAAAGATATTTGACCAAGGCGAGAACCATCACGTCAAACAATAATGAAAAAAGTTTAAT
3791953 CAGGTACAATCAAACG
66 CAGGTACAATCAAACG
* * * *
3791969 GGAATGAAAAGATATTTGATCAGGGTGAGAACCATC-CTGTCAAACAATAATGAAAATATGTTTA
1 GGAATGAAAAGATATTTGACCAAGGCGAGAACCATCAC-GTCAAACAATAATGAAAA-AAGTTTA
*
3792033 ACCAGG
64 ATCAGG
3792039 GCAAAAACCA
Statistics
Matches: 125, Mismatches: 23, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
80 1 0.01
81 112 0.90
82 12 0.10
ACGTcount: A:0.41, C:0.12, G:0.22, T:0.24
Consensus pattern (81 bp):
GGAATGAAAAGATATTTGACCAAGGCGAGAACCATCACGTCAAACAATAATGAAAAAAGTTTAAT
CAGGTACAATCAAACG
Found at i:3792139 original size:127 final size:127
Alignment explanation
Indices: 3791890--3792157 Score: 299
Period size: 127 Copynumber: 2.1 Consensus size: 127
3791880 GTCAAACTGG
* * * * * * *
3791890 AATGAAAAGATGTTTGACCAAGGCGAGAACCATCACGTCAAATGGTAATGAATAGAGTTTGATCA
1 AATGAAAAGATGTTTAACCAAGGCAAAAACCATCACATCAAATAGTAATGAAAAAAGTTTGATCA
* * * * * *
3791955 GGTACAATCAAACGGGAATGAAAAGATATTTGATCAGGGTGAGAACCATCCTGTCAAACAAT
66 GATACAATCAAACGGGAATGAAAAGATATTTGACCAAGGCGAAAACCATCCTATCAAACAAT
* * *
3792017 AATGAAAATATGTTTAACCAGGGCAAAAACCATCACATTAAATAGTAATGAAAAAAGTTTGA-CT
1 AATGAAAAGATGTTTAACCAAGGCAAAAACCATCACATCAAATAGTAATGAAAAAAGTTTGATC-
* * * ***
3792081 AGATACAGTCAAACGGGAATGAAAAGATGTTTGACCAAGGCGAAAACTATCAC-ATCAAATTGT
65 AGATACAATCAAACGGGAATGAAAAGATATTTGACCAAGGCGAAAACCATC-CTATCAAACAAT
3792144 AATGAAAAG-TGTTT
1 AATGAAAAGATGTTT
3792158 GACCTAGTAA
Statistics
Matches: 116, Mismatches: 23, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
126 6 0.05
127 109 0.94
128 1 0.01
ACGTcount: A:0.43, C:0.14, G:0.20, T:0.23
Consensus pattern (127 bp):
AATGAAAAGATGTTTAACCAAGGCAAAAACCATCACATCAAATAGTAATGAAAAAAGTTTGATCA
GATACAATCAAACGGGAATGAAAAGATATTTGACCAAGGCGAAAACCATCCTATCAAACAAT
Found at i:3792146 original size:81 final size:80
Alignment explanation
Indices: 3792007--3792185 Score: 216
Period size: 81 Copynumber: 2.2 Consensus size: 80
3791997 GAACCATCCT
** * * *
3792007 GTCAAACAATAATGAAAATATGTTTAACCAGGGCAAAAACCATCACATTAAATAGTAATGAAAAA
1 GTCAAACAGGAATGAAAAGATGTTTAACCAAGGCAAAAACCATCACATCAAATAGTAATGAAAAA
3792072 AGTTTGA-CTAGATACA
66 AGTTTGACCTAG-TA-A
* * * * * *
3792088 GTCAAACGGGAATGAAAAGATGTTTGACCAAGGCGAAAACTATCACATCAAATTGTAATGAAAAG
1 GTCAAACAGGAATGAAAAGATGTTTAACCAAGGCAAAAACCATCACATCAAATAGTAATGAAAAA
*
3792153 TGTTTGACCTAGTAA
66 AGTTTGACCTAGTAA
*
3792168 GTCAAACATGAATGAAAA
1 GTCAAACAGGAATGAAAA
3792186 AAGTTTGTTC
Statistics
Matches: 83, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
80 17 0.20
81 62 0.75
82 4 0.05
ACGTcount: A:0.46, C:0.13, G:0.17, T:0.23
Consensus pattern (80 bp):
GTCAAACAGGAATGAAAAGATGTTTAACCAAGGCAAAAACCATCACATCAAATAGTAATGAAAAA
AGTTTGACCTAGTAA
Found at i:3793132 original size:9 final size:9
Alignment explanation
Indices: 3793118--3793142 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
3793108 CTTATTTATT
3793118 TTTTTTTTC
1 TTTTTTTTC
3793127 TTTTTTTTC
1 TTTTTTTTC
3793136 TTTTTTT
1 TTTTTTT
3793143 AAATTTCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:3795717 original size:3 final size:3
Alignment explanation
Indices: 3795702--3795733 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
3795692 CACCATCAAA
*
3795702 GAT GAT GAA GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
3795734 AGTTGACTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.38, C:0.00, G:0.34, T:0.28
Consensus pattern (3 bp):
GAT
Found at i:3802026 original size:20 final size:21
Alignment explanation
Indices: 3801984--3802027 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
3801974 GCTTGTCTTG
3801984 ATATTTTATACATAAATGCAAT
1 ATATTTTATACATAAAT-CAAT
* *
3802006 ATATTTTCTACATGAAT-AAT
1 ATATTTTATACATAAATCAAT
3802026 AT
1 AT
3802028 TCATATATCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 5 0.25
22 15 0.75
ACGTcount: A:0.43, C:0.09, G:0.05, T:0.43
Consensus pattern (21 bp):
ATATTTTATACATAAATCAAT
Found at i:3802089 original size:12 final size:12
Alignment explanation
Indices: 3802072--3802096 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
3802062 AAAAAAGGGG
3802072 AGAAATATTTTC
1 AGAAATATTTTC
3802084 AGAAATATTTTC
1 AGAAATATTTTC
3802096 A
1 A
3802097 AAAAAGGGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (12 bp):
AGAAATATTTTC
Found at i:3802907 original size:19 final size:20
Alignment explanation
Indices: 3802865--3802914 Score: 75
Period size: 19 Copynumber: 2.5 Consensus size: 20
3802855 ACACCCAGAT
*
3802865 GTATCGATACATATTGCTTA
1 GTATCGATACATATTGCATA
*
3802885 GTATCGATACATGTT-CATA
1 GTATCGATACATATTGCATA
3802904 GTATCGATACA
1 GTATCGATACA
3802915 CCTTGAAAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
19 14 0.50
20 14 0.50
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (20 bp):
GTATCGATACATATTGCATA
Found at i:3805832 original size:16 final size:16
Alignment explanation
Indices: 3805813--3805857 Score: 67
Period size: 15 Copynumber: 2.9 Consensus size: 16
3805803 ATTTACCAAA
3805813 CCTCATATTTACAATG
1 CCTCATATTTACAATG
3805829 CCTC-TATTTACAATG
1 CCTCATATTTACAATG
*
3805844 CCT-ATATTTGCAAT
1 CCTCATATTTACAAT
3805858 TCTTAAAAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 23 0.85
16 4 0.15
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.40
Consensus pattern (16 bp):
CCTCATATTTACAATG
Found at i:3809070 original size:151 final size:150
Alignment explanation
Indices: 3808735--3809136 Score: 418
Period size: 151 Copynumber: 2.7 Consensus size: 150
3808725 GAAGCTACCT
* * *
3808735 AGTAGTTTCACAGGACTAGGTTT-TAGGGAAAAATGCTAAAAGGTCCCTAAGGTCTACCATCGAC
1 AGTAGTTTCATAGGACTAGGTTTCGA-GGAAAAATGCTAAAAGGTCCCTAAGGTCTACCATCAAC
* * * *** *
3808799 TTAGAAGAGCCTAGTGATCCTAAAGGACTTG--AAAAAGTAAAAGCAAACTTTCACCTAATACGT
65 TTAGAAGTGCCTAGTGATCCT-AAGGACTTGAAAAAAAATAAAAACAAACCCACACCTAATACAT
* * *
3808862 AGCCTCAGCATAGAAGTGACTT
129 AGCCTCAACATAGAAGAGACTC
* * * * *
3808884 AGCAATTCCATAGGGCTAGGTTTCAAGGGGAAAAATGCTAAAAGGTCCCTAAGGTCTACCATCAA
1 AGTAGTTTCATAGGACTAGGTTTC--GAGGAAAAATGCTAAAAGGTCCCTAAGGTCTACCATCAA
* *
3808949 CTTAGAAGTGCCTAGTGATCCTAGAGGACTTGAAAAAAAATAAAAACAAACCCACTCCTAATTCA
64 CTTAGAAGTGCCTAGTGATCCTA-AGGACTTGAAAAAAAATAAAAACAAACCCACACCTAATACA
*
3809014 TA-CCTTCAACGTAGAAGCAGACTC
128 TAGCC-TCAACATAGAAG-AGACTC
* * ** * * *
3809038 GGTAGTTTTATAGGACTAGGTTTCGAGG-AAAATGCTAAAAATATCCCTAAGATTTATCATCAAC
1 AGTAGTTTCATAGGACTAGGTTTCGAGGAAAAATGCT-AAAAGGTCCCTAAGGTCTACCATCAAC
* *
3809102 TTAGAAGTACCCAGTGATCCTAAGGGACTTGAAAA
65 TTAGAAGTGCCTAGTGATCCTAA-GGACTTGAAAA
3809137 GGGTTGCAAA
Statistics
Matches: 208, Mismatches: 35, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
149 18 0.09
150 1 0.00
151 74 0.36
152 58 0.28
153 35 0.17
154 22 0.11
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (150 bp):
AGTAGTTTCATAGGACTAGGTTTCGAGGAAAAATGCTAAAAGGTCCCTAAGGTCTACCATCAACT
TAGAAGTGCCTAGTGATCCTAAGGACTTGAAAAAAAATAAAAACAAACCCACACCTAATACATAG
CCTCAACATAGAAGAGACTC
Found at i:3810705 original size:19 final size:18
Alignment explanation
Indices: 3810681--3810716 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
3810671 GATTTTCCTG
3810681 TTTTTCTCTCTTTCTTTTT
1 TTTTTCTCTCTTT-TTTTT
3810700 TTTTTCTCTCTTTTTTT
1 TTTTTCTCTCTTTTTTT
3810717 CTTCCTCCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (18 bp):
TTTTTCTCTCTTTTTTTT
Found at i:3810852 original size:18 final size:18
Alignment explanation
Indices: 3810826--3810861 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
3810816 AATTTGTTTC
*
3810826 TTTGATTTTCCTTTTTTT
1 TTTGATTTTCATTTTTTT
*
3810844 TTTGTTTTTCATTTTTTT
1 TTTGATTTTCATTTTTTT
3810862 CATGCATTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.06, C:0.08, G:0.06, T:0.81
Consensus pattern (18 bp):
TTTGATTTTCATTTTTTT
Found at i:3811593 original size:164 final size:163
Alignment explanation
Indices: 3811205--3811614 Score: 426
Period size: 164 Copynumber: 2.5 Consensus size: 163
3811195 TAATAAATAC
** * * *
3811205 AAAAAAATTCAAAACTCAT-AAGTAAATTGAATTTTGAAAAACTAATTTAATATGAATTTAATAG
1 AAAAAAATGAAAAACTCATGAAATAAAATGAATTTTGAAAAACTAATTTAATATGAATTAAAT-G
* * *
3811269 A-AATATTAGATGAATTTTAAAAATTTTAAACTAAGAAAAATCTTCCCGAAAAAATTATGGAGAA
65 ATAATATTTGAAGAATTTTAAAAATTATAAACTAAGAAAAATC-TCCCGAAAAAATTATGGAGAA
* *
3811333 GAAAACTCTGTTGTTCGAAAATAGAAGAATTTCAT
129 GAAAACTCTGTTGTTCGAAAACAGAAAAATTTCAT
** * * ** *
3811368 GGAAAAATGAAAAACTTAGGAAA-ATAAATGAATTTTTCAAAACTAATTTACTATGAATTAAATG
1 AAAAAAATGAAAAACTCATGAAATA-AAATGAATTTTGAAAAACTAATTTAATATGAATTAAATG
*
3811432 ATAATATTTGAAGAATTTTAAAAATTATAAACTCAA-AAAAATC-CCACGAAAACATTTATGGAG
65 ATAATATTTGAAGAATTTTAAAAATTATAAACT-AAGAAAAATCTCC-CGAAAA-AATTATGGAG
* *
3811495 TAGAAAACTCTGTAT-TTC-ATAACAGAAAAATTTCA-
127 AAGAAAACTCTGT-TGTTCGAAAACAGAAAAATTTCAT
* *
3811530 AAACAAAAGTG-AAAACTCATGAAATAAAAAGAATTTTGAAAAAATGAATTTAATA-GTAATTAA
1 AAA-AAAA-TGAAAAACTCATGAAATAAAATGAATTTTGAAAAACT-AATTTAATATG-AATTAA
* * *
3811593 ATAATGATATTTAAAGAATTTT
62 ATGATAATATTTGAAGAATTTT
3811615 GAAGTTAAAA
Statistics
Matches: 203, Mismatches: 32, Indels: 23
0.79 0.12 0.09
Matches are distributed among these distances:
162 3 0.01
163 67 0.33
164 130 0.64
165 3 0.01
ACGTcount: A:0.51, C:0.08, G:0.11, T:0.30
Consensus pattern (163 bp):
AAAAAAATGAAAAACTCATGAAATAAAATGAATTTTGAAAAACTAATTTAATATGAATTAAATGA
TAATATTTGAAGAATTTTAAAAATTATAAACTAAGAAAAATCTCCCGAAAAAATTATGGAGAAGA
AAACTCTGTTGTTCGAAAACAGAAAAATTTCAT
Found at i:3817349 original size:199 final size:199
Alignment explanation
Indices: 3817004--3817399 Score: 702
Period size: 199 Copynumber: 2.0 Consensus size: 199
3816994 GTTCTCCAAA
* * *
3817004 CTTAGATGAACTGATTTTCTTGCCATTACCATCTCCATTAATTTTGTAATCTCTGCCTATATTTC
1 CTTAAATGAACTGATTTTCTTGCCATTACCATCTCCATTAATTTTGCAATCTCTGCCTAGATTTC
*
3817069 TTCTTATCGTTTCAACATGCCCTCTTAAGCTTCATGGTGTCTTTCTTTTATCCTTTCAAGTCTCG
66 TTCTTATCGTTTCAACATGCCCTCTTAAGCTTCATGGTGTCTTTATTTTATCCTTTCAAGTCTCG
3817134 CAAAATGCTCATTGCCATTATTCGTCCTCCTAAATGGGTGTAATATTGATACATCACTAGTTATT
131 CAAAATGCTCATTGCCATTATTCGTCCTCCTAAATGGGTGTAATATTGATACATCACTAGTTATT
3817199 TTAT
196 TTAT
* *
3817203 CTTAAATGAACTGATTTTCTTGCCATTACCATCTCCATTAATTTTGCAATTTGTGCCTAGATTTC
1 CTTAAATGAACTGATTTTCTTGCCATTACCATCTCCATTAATTTTGCAATCTCTGCCTAGATTTC
* *
3817268 TTCTTGTCGTTTCAACATGGCCTCTTAAGCTTCATGGTGTCTTTATTTTATCCTTTCAAGTCTCG
66 TTCTTATCGTTTCAACATGCCCTCTTAAGCTTCATGGTGTCTTTATTTTATCCTTTCAAGTCTCG
* *
3817333 CAAAATGCTCATTGCCATTCTTCGTCCTCCTAAATGGGTGTAATATTGATACATCACTGGTTATT
131 CAAAATGCTCATTGCCATTATTCGTCCTCCTAAATGGGTGTAATATTGATACATCACTAGTTATT
3817398 TT
196 TT
3817400 GTCATTCTTA
Statistics
Matches: 187, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
199 187 1.00
ACGTcount: A:0.22, C:0.22, G:0.13, T:0.43
Consensus pattern (199 bp):
CTTAAATGAACTGATTTTCTTGCCATTACCATCTCCATTAATTTTGCAATCTCTGCCTAGATTTC
TTCTTATCGTTTCAACATGCCCTCTTAAGCTTCATGGTGTCTTTATTTTATCCTTTCAAGTCTCG
CAAAATGCTCATTGCCATTATTCGTCCTCCTAAATGGGTGTAATATTGATACATCACTAGTTATT
TTAT
Found at i:3817532 original size:12 final size:11
Alignment explanation
Indices: 3817513--3817572 Score: 50
Period size: 12 Copynumber: 5.1 Consensus size: 11
3817503 ATGTACCCAT
3817513 ATGTATGTATA
1 ATGTATGTATA
*
3817524 ATGGTATGTAAA
1 AT-GTATGTATA
3817536 ATGTATGTTATAAA
1 ATGTATG-TAT--A
3817550 ATGTATGTATGA
1 ATGTATGTAT-A
*
3817562 ATAT-TGTATA
1 ATGTATGTATA
3817572 A
1 A
3817573 AAAATAAACA
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
10 2 0.05
11 12 0.29
12 16 0.39
13 3 0.07
14 8 0.20
ACGTcount: A:0.40, C:0.00, G:0.18, T:0.42
Consensus pattern (11 bp):
ATGTATGTATA
Found at i:3818739 original size:20 final size:20
Alignment explanation
Indices: 3818714--3818820 Score: 79
Period size: 20 Copynumber: 4.8 Consensus size: 20
3818704 TTTTACCTAG
3818714 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
3818734 ATGTATCGATACATTCTGTCTTTTACCCA
1 ATGTATCGATACA-----T-TTTT---CA
* * *
3818763 GATGTATCGATACATGTATGA
1 -ATGTATCGATACATTTTTCA
* *
3818784 ATGTATCAATACATTCTTCA
1 ATGTATCGATACATTTTTCA
3818804 ATGTATCGATACATTTT
1 ATGTATCGATACATTTT
3818821 GTCTTTTTAC
Statistics
Matches: 67, Mismatches: 10, Indels: 20
0.69 0.10 0.21
Matches are distributed among these distances:
20 43 0.64
21 1 0.01
24 2 0.03
25 2 0.03
26 4 0.06
29 2 0.03
30 13 0.19
ACGTcount: A:0.30, C:0.17, G:0.12, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:3818787 original size:50 final size:50
Alignment explanation
Indices: 3818704--3818800 Score: 149
Period size: 50 Copynumber: 1.9 Consensus size: 50
3818694 AAAGTCACAT
* * * *
3818704 TTTTACCTAGATGTATCGATACATTTTTCAATGTATCGATACATTCTGTC
1 TTTTACCCAGATGTATCGATACATGTATCAATGTATCAATACATTCTGTC
*
3818754 TTTTACCCAGATGTATCGATACATGTATGAATGTATCAATACATTCT
1 TTTTACCCAGATGTATCGATACATGTATCAATGTATCAATACATTCT
3818801 TCAATGTATC
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 42 1.00
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (50 bp):
TTTTACCCAGATGTATCGATACATGTATCAATGTATCAATACATTCTGTC
Found at i:3818827 original size:70 final size:73
Alignment explanation
Indices: 3818714--3818851 Score: 210
Period size: 70 Copynumber: 1.9 Consensus size: 73
3818704 TTTTACCTAG
* * *
3818714 ATGTATCGATACATTTTTCAATGTATCGATACATTCTGTC-TTTTACCC-A-GATGTATCGATAC
1 ATGTATCAATACATTCTTCAATGTATCGATACATTCTGTCTTTTTACCCAATAATGTATCGATAC
3818776 ATGTATGA
66 ATGTATGA
*
3818784 ATGTATCAATACATTCTTCAATGTATCGATACATTTTGTCTTTTTACCCAAATAATGTATCGATA
1 ATGTATCAATACATTCTTCAATGTATCGATACATTCTGTCTTTTTACCC-AATAATGTATCGATA
3818849 CAT
65 CAT
3818852 TAATGTATCG
Statistics
Matches: 60, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
70 37 0.62
71 8 0.13
73 1 0.02
74 14 0.23
ACGTcount: A:0.30, C:0.17, G:0.12, T:0.41
Consensus pattern (73 bp):
ATGTATCAATACATTCTTCAATGTATCGATACATTCTGTCTTTTTACCCAATAATGTATCGATAC
ATGTATGA
Found at i:3818857 original size:16 final size:16
Alignment explanation
Indices: 3818836--3818867 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
3818826 TTTACCCAAA
3818836 TAATGTATCGATACAT
1 TAATGTATCGATACAT
3818852 TAATGTATCGATACAT
1 TAATGTATCGATACAT
3818868 CTAGTTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (16 bp):
TAATGTATCGATACAT
Found at i:3818857 original size:70 final size:69
Alignment explanation
Indices: 3818714--3818867 Score: 206
Period size: 70 Copynumber: 2.2 Consensus size: 69
3818704 TTTTACCTAG
* *
3818714 ATGTATCGATACATTTTTCAATGTATCGATACATTCTGTCTTTTACCCAGATGTATCGATACATG
1 ATGTATCGATACATTCTTCAATGTATCGATACATTCTGTCTTTTACCCAAATGTATCGATACA-G
3818779 TATGA
65 TATGA
* *
3818784 ATGTATCAATACATTCTTCAATGTATCGATACATTTTGTCTTTTTACCCAAATAATGTATCGATA
1 ATGTATCGATACATTCTTCAATGTATCGATACATTCTGTC-TTTTACCC--A-AATGTATCGATA
3818849 CA-T-T-A
62 CAGTATGA
3818854 ATGTATCGATACAT
1 ATGTATCGATACAT
3818868 CTAGTTAAAA
Statistics
Matches: 75, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
70 51 0.68
71 9 0.12
72 1 0.01
73 1 0.01
74 13 0.17
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.40
Consensus pattern (69 bp):
ATGTATCGATACATTCTTCAATGTATCGATACATTCTGTCTTTTACCCAAATGTATCGATACAGT
ATGA
Found at i:3823166 original size:52 final size:52
Alignment explanation
Indices: 3823085--3823261 Score: 311
Period size: 52 Copynumber: 3.4 Consensus size: 52
3823075 ATATGAAAAG
* **
3823085 TTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTCAGCAAAT
1 TTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGCAAAT
3823137 TTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGCAAAT
3823189 TTGCCTGCATGTATCGATACATTTTATAAG-GTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTTAT-AGTGTATCGATACATCTGGGCAAAT
3823241 TTGCCTGCATGTATCGATACA
1 TTGCCTGCATGTATCGATACA
3823262 AAGATCAGTG
Statistics
Matches: 121, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
52 119 0.98
53 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGCAAAT
Found at i:3823275 original size:52 final size:52
Alignment explanation
Indices: 3823085--3823282 Score: 294
Period size: 52 Copynumber: 3.8 Consensus size: 52
3823075 ATATGAAAAG
**
3823085 TTGCCTGCATGTATCGATACATT-TAATAGTGTATCGATACATCTCAGCAAAT
1 TTGCCTGCATGTATCGATACATTAT-ATAGTGTATCGATACATCTGGGCAAAT
*
3823137 TTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTATATAGTGTATCGATACATCTGGGCAAAT
*
3823189 TTGCCTGCATGTATCGATACATTTTATAAG-GTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTATAT-AGTGTATCGATACATCTGGGCAAAT
* *
3823241 TTGCCTGCATGTATCGATACA-AAGATCAGTGTATCGATACAT
1 TTGCCTGCATGTATCGATACATTATAT-AGTGTATCGATACAT
3823283 TTGAGTAATG
Statistics
Matches: 137, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
51 4 0.03
52 130 0.95
53 3 0.02
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.34
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACATTATATAGTGTATCGATACATCTGGGCAAAT
Found at i:3823361 original size:13 final size:13
Alignment explanation
Indices: 3823343--3823367 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3823333 ACAAAACTTA
3823343 TGTATCGATACAT
1 TGTATCGATACAT
3823356 TGTATCGATACA
1 TGTATCGATACA
3823368 ACACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3823367 original size:32 final size:32
Alignment explanation
Indices: 3823326--3823386 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
3823316 GCTTAAATTT
3823326 TATCGATACAAAACTTATGTATCGATACATTG
1 TATCGATACAAAACTTATGTATCGATACATTG
*
3823358 TATCGATACAACACTTATGTATCGATACA
1 TATCGATACAAAACTTATGTATCGATACA
3823387 ACACTTTATG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.33
Consensus pattern (32 bp):
TATCGATACAAAACTTATGTATCGATACATTG
Found at i:3823397 original size:20 final size:19
Alignment explanation
Indices: 3823326--3823407 Score: 104
Period size: 19 Copynumber: 4.6 Consensus size: 19
3823316 GCTTAAATTT
*
3823326 TATCGATACAAAACTTATG
1 TATCGATACAACACTTATG
3823345 TATCGAT---ACA--T-TG
1 TATCGATACAACACTTATG
3823358 TATCGATACAACACTTATG
1 TATCGATACAACACTTATG
3823377 TATCGATACAACACTTTATG
1 TATCGATACAACAC-TTATG
3823397 TATCGATACAA
1 TATCGATACAA
3823408 ATCATTGAAA
Statistics
Matches: 55, Mismatches: 1, Indels: 13
0.80 0.01 0.19
Matches are distributed among these distances:
13 9 0.16
14 1 0.02
16 5 0.09
18 1 0.02
19 23 0.42
20 16 0.29
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.33
Consensus pattern (19 bp):
TATCGATACAACACTTATG
Found at i:3824233 original size:43 final size:44
Alignment explanation
Indices: 3824142--3824234 Score: 109
Period size: 43 Copynumber: 2.2 Consensus size: 44
3824132 ACTTGAAGAT
* * *
3824142 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTG
1 AAAGATGCCAATATGCTGATTCAAGGCCAACGACATTGGACTTG
* * * *
3824186 -AAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGC-TG
1 AAAGATGCCAATATGCTGATTCAAGGCCAACGACATTGGACTTG
3824228 AAAGATG
1 AAAGATG
3824235 AGAAAAAGGA
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
42 2 0.05
43 39 0.95
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (44 bp):
AAAGATGCCAATATGCTGATTCAAGGCCAACGACATTGGACTTG
Found at i:3824287 original size:55 final size:52
Alignment explanation
Indices: 3824190--3824775 Score: 383
Period size: 43 Copynumber: 12.4 Consensus size: 52
3824180 GACTTGAAGA
* * * * *
3824190 TGCCAATATGTTGATTCATGGCCAACGATATTGGGCTGAAAGATGAGAAAAAGG
1 TGCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGATG-G-AAAAGG
* * * *
3824244 ATGTCAATGTGCTGATTCAAGGCCAACTACATTGAACTTAAAGATGGAAAAGG
1 -TGCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGATGGAAAAGG
*
3824297 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----T---AAAGG
1 TGCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGATGGAAAAGG
* * * *
3824340 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA---AGAAGG
1 TGCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGATGGAAAAGG
*
3824389 TGCCAATATGCTGATTCAAGGCCAACTATATTGGCCTT-AA-A--G---A--
1 TGCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGATGGAAAAGG
* * *
3824432 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGG
1 TGCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGATGGAAAAGG
* * *
3824481 TGCCAATATGTTGATTCAAGGCCAGCGATATTGGAC-T-----T---AAAGG
1 TGCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGATGGAAAAGG
* * * * *
3824524 TGCCAATGTACTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGA
1 TGCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGATGGAAAAGG
* * *
3824573 TGCCTATATGCTGATTCAAGGCCAGCGATATTGGAC-T-----T---AAAGG
1 TGCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGATGGAAAAGG
* * *
3824616 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGG
1 TGCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGATGGAAAAGG
* *
3824665 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC-T-----T---AAAGG
1 TGCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGATGGAAAAGG
* * *
3824708 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G-AAA-G
1 TGCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGATGGAAAAGG
*
3824757 TGCCAATATGCTTATTCAA
1 TGCCAATATGCTGATTCAA
3824776 AGCTAGCGAT
Statistics
Matches: 440, Mismatches: 53, Indels: 82
0.77 0.09 0.14
Matches are distributed among these distances:
43 183 0.42
44 6 0.01
45 2 0.00
46 2 0.00
47 2 0.00
48 5 0.01
49 162 0.37
50 3 0.01
51 1 0.00
52 31 0.07
53 6 0.01
54 1 0.00
55 36 0.08
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (52 bp):
TGCCAATATGCTGATTCAAGGCCAACTATATTGGACTTAAAGATGGAAAAGG
Found at i:3824353 original size:43 final size:43
Alignment explanation
Indices: 3824292--3824749 Score: 529
Period size: 43 Copynumber: 10.1 Consensus size: 43
3824282 TAAAGATGGA
*
3824292 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
*
3824335 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
* * *
3824378 AAAGAAGAAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGCCTT
1 -----A-AAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
* *
3824427 AAAGATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
* * *
3824470 AAAGATGAAGGTGCCAATATGTTGATTCAAGGCCAGCGATATTGGACTT
1 ----A--AAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
* *
3824519 AAAGGTGCCAATGTACTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
* * *
3824562 AAAGATGAAGATGCCTATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 -AA-A-G--G-TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
*
3824611 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
* *
3824654 AAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 ----A--AAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
*
3824703 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
3824746 AAAG
1 AAAG
3824750 ATGAAAGTGC
Statistics
Matches: 355, Mismatches: 36, Indels: 48
0.81 0.08 0.11
Matches are distributed among these distances:
43 192 0.54
44 4 0.01
45 3 0.01
46 2 0.01
47 3 0.01
48 4 0.01
49 147 0.41
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.26
Consensus pattern (43 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT
Found at i:3824428 original size:92 final size:92
Alignment explanation
Indices: 3824239--3824788 Score: 911
Period size: 92 Copynumber: 5.9 Consensus size: 92
3824229 AAGATGAGAA
* * *
3824239 AAAGGATGTCAATGTGCTGATTCAAGGCCAACTACATTGAACTTAAAGATGGAAAAGGTGCCAAT
1 AAAGG-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGCCAAT
*
3824304 ATGCTGATTCAAGGCCAGCTATATTGGACTT
62 ATGCTGATTCAAGGCCAGCGATATTGGACTT
*
3824335 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
* * *
3824400 TGATTCAAGGCCAACTATATTGGCCTT
66 TGATTCAAGGCCAGCGATATTGGACTT
* *
3824427 AAAGATGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
3824492 TGATTCAAGGCCAGCGATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
* * *
3824519 AAAGGTGCCAATGTACTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCTATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
3824584 TGATTCAAGGCCAGCGATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
3824611 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
3824676 TGATTCAAGGCCAGCGATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
*
3824703 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAAGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
* * *
3824768 TTATTCAAAGCTAGCGATATT
66 TGATTCAAGGCCAGCGATATT
3824789 AGGCTTAGAA
Statistics
Matches: 430, Mismatches: 24, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
92 384 0.89
94 1 0.00
95 40 0.09
96 5 0.01
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (92 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
TGATTCAAGGCCAGCGATATTGGACTT
Found at i:3824832 original size:33 final size:33
Alignment explanation
Indices: 3824795--3824995 Score: 295
Period size: 33 Copynumber: 6.2 Consensus size: 33
3824785 TATTAGGCTT
*
3824795 AGAAGGGTTGCCACCGACTTGTGCGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
*
3824828 AGAA-GGTTGCCACCGACTTGTGTGGGCTTTGG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
3824860 AAGAA-GGTTGCCACCGACTTGTGTGGGCTTTAG
1 -AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
* * *
3824893 AG-AGGGTTACCACCAACTTGTGTGGGCTTTGG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
3824925 AAGAA-GGTTGCCACCGACTTGTGTGGGCTTTAG
1 -AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
*
3824958 AGAAGGGTTGCCACCAACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
3824991 A-AAGG
1 AGAAGG
3824996 TGAAAGATGC
Statistics
Matches: 153, Mismatches: 10, Indels: 11
0.88 0.06 0.06
Matches are distributed among these distances:
31 1 0.01
32 61 0.40
33 90 0.59
34 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.35, T:0.26
Consensus pattern (33 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
Found at i:3824875 original size:65 final size:65
Alignment explanation
Indices: 3824795--3824988 Score: 334
Period size: 65 Copynumber: 3.0 Consensus size: 65
3824785 TATTAGGCTT
* *
3824795 AGAAGGGTTGCCACCGACTTGTGCGGGCTTTAGAGAAGGTTGCCACCGACTTGTGTGGGCTTTGG
1 AGAA-GGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGTTGCCACCAACTTGTGTGGGCTTTGG
3824860 A
65 A
* *
3824861 AGAAGGTTGCCACCGACTTGTGTGGGCTTTAGAGAGGGTTACCACCAACTTGTGTGGGCTTTGGA
1 AGAAGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGTTGCCACCAACTTGTGTGGGCTTTGGA
3824926 AGAAGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCAACTTGTGTGGGCTTT
1 AGAAGGTTGCCACCGACTTGTGTGGGCTTTAGAGAA-GGTTGCCACCAACTTGTGTGGGCTTT
3824989 AGAAAGGTGA
Statistics
Matches: 121, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
65 92 0.76
66 29 0.24
ACGTcount: A:0.19, C:0.19, G:0.35, T:0.27
Consensus pattern (65 bp):
AGAAGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGTTGCCACCAACTTGTGTGGGCTTTGGA
Found at i:3824967 original size:98 final size:96
Alignment explanation
Indices: 3824793--3824992 Score: 312
Period size: 98 Copynumber: 2.1 Consensus size: 96
3824783 GATATTAGGC
* *
3824793 TTAGAAGGGTTGCCACCGACTTGTGCGGGCTTTAGAGAAGGTTGCCACCGACTTGTGTGGGCTTT
1 TTAGAAGGGTTACCACCAACTTGTGCGGGCTTTAGAGAAGGTTGCCACCGACTTGTGTGGGCTTT
* *
3824858 GGAAGAAGGTTGCCACCGACTTGTGTGGGCT
66 AGAAGAAGGTTGCCACCAACTTGTGTGGGCT
* *
3824889 TTAGAGAGGGTTACCACCAACTTGTGTGGGCTTTGGAAGAAGGTTGCCACCGACTTGTGTGGGCT
1 TTAGA-AGGGTTACCACCAACTTGTGCGGGCTTTAG-AGAAGGTTGCCACCGACTTGTGTGGGCT
3824954 TTAG-AGAAGGGTTGCCACCAACTTGTGTGGGCT
64 TTAGAAGAA-GGTTGCCACCAACTTGTGTGGGCT
3824987 TTAGAA
1 TTAGAA
3824993 AGGTGAAAGA
Statistics
Matches: 95, Mismatches: 6, Indels: 5
0.90 0.06 0.05
Matches are distributed among these distances:
96 5 0.05
97 31 0.33
98 59 0.62
ACGTcount: A:0.20, C:0.18, G:0.34, T:0.28
Consensus pattern (96 bp):
TTAGAAGGGTTACCACCAACTTGTGCGGGCTTTAGAGAAGGTTGCCACCGACTTGTGTGGGCTTT
AGAAGAAGGTTGCCACCAACTTGTGTGGGCT
Found at i:3825123 original size:31 final size:31
Alignment explanation
Indices: 3825070--3825827 Score: 429
Period size: 31 Copynumber: 23.7 Consensus size: 31
3825060 GGGAAAAAGA
* *
3825070 GTGCCACGGAGTTGTGGGCTTTGAAAAGAAG
1 GTGCCACGGAGTCGTGGACTTTGAAAAGAAG
* * *
3825101 GTGCCACAGAGTCGCGGACTTTGAAAGGAAG
1 GTGCCACGGAGTCGTGGACTTTGAAAAGAAG
** *
3825132 GTGCCACGGAGTCGTGGACTTAAAAGGAACAAG
1 GTGCCACGGAGTCGTGGACTTTGAA--AAGAAG
* * *
3825165 GTGCCATGGGGTTGTGGACTTT-AAAAGGGTAAAAG
1 GTGCCACGGAGTCGTGGACTTTGAAAA--G---AAG
* * * *
3825200 AGTGCCATGGAATTGTGGGCTTTGAAAAGAAG
1 -GTGCCACGGAGTCGTGGACTTTGAAAAGAAG
* *
3825232 GTGCCACGGAGTCGCGGACTTT-AAGGAACAAG
1 GTGCCACGGAGTCGTGGACTTTGAA--AAGAAG
* *
3825264 GTGGCACGGAGAT-GTGGACTGT-AAAAGGGAAAAAG
1 GTGCCACGGAG-TCGTGGACTTTGAAAA--G---AAG
* * *
3825299 AGTGCCATGGAGTTGTGGGCTTTGAAAAGAAG
1 -GTGCCACGGAGTCGTGGACTTTGAAAAGAAG
** *
3825331 GTGCCACGGAGTCACGGACTTTGAAAGGAAG
1 GTGCCACGGAGTCGTGGACTTTGAAAAGAAG
* ** *
3825362 GTGCCACGGAGTCATGGACTTAAAAGGAACAAG
1 GTGCCACGGAGTCGTGGACTTTGAA--AAGAAG
* * *
3825395 GTGCCACGAAGTTGTGGACTTTGAAAAAAAG
1 GTGCCACGGAGTCGTGGACTTTGAAAAGAAG
*
3825426 GATGCCACTGAGTCGTGGACTTTGAGACAA-AA-
1 G-TGCCACGGAGTCGTGGACTTTGA-A-AAGAAG
* *
3825458 -CGCCACTGAGTCGTGGACTTTGAAGAA-AAG
1 GTGCCACGGAGTCGTGGACTTTGAA-AAGAAG
*
3825488 GATGCCACTGAGTCGTGGACTTTGAGATAA-AA-
1 G-TGCCACGGAGTCGTGGACTTTGA-A-AAGAAG
*
3825520 -TGCCACTGAGTCGTGGACTTTGAGATAA-AA-
1 GTGCCACGGAGTCGTGGACTTTGA-A-AAGAAG
*
3825550 -TGCCACTGAGTCGTGGACTTTGAAGAA-AAG
1 GTGCCACGGAGTCGTGGACTTTGAA-AAGAAG
** * *
3825580 GATGCCATTGAGTCGTGAACTTTGCGACAA-AA-
1 G-TGCCACGGAGTCGTGGACTTT--GAAAAGAAG
* *
3825612 -TGCCACTGAGTCGTGGGCTTTGAAAAGAAG
1 GTGCCACGGAGTCGTGGACTTTGAAAAGAAG
* * ** *
3825642 GTGCCACGAAGTCATGGACTTAAAAGGAACAAG
1 GTGCCACGGAGTCGTGGACTTTGAA--AAGAAG
* *
3825675 GTGCCACGGGGTTGTGGACTTT-AAAAGGGTAAAAG
1 GTGCCACGGAGTCGTGGACTTTGAAAA--G---AAG
* * * * *
3825710 AGTGCCACAGAATTGTGGGCTTTGAAAAAAAG
1 -GTGCCACGGAGTCGTGGACTTTGAAAAGAAG
* * * * *
3825742 GTGCCACGAAGTTGCGGACTTTAAAGGAACAAG
1 GTGCCACGGAGTCGTGGACTTTGAA--AAGAAG
* * *
3825775 GTGCCACAGAGTTGTGGGCTTTGAAAAGAAG
1 GTGCCACGGAGTCGTGGACTTTGAAAAGAAG
3825806 GTGCCACGGAGTCGTGGACTTT
1 GTGCCACGGAGTCGTGGACTTT
3825828 AAGAAGGTAT
Statistics
Matches: 580, Mismatches: 99, Indels: 96
0.75 0.13 0.12
Matches are distributed among these distances:
28 4 0.01
29 12 0.02
30 101 0.17
31 178 0.31
32 98 0.17
33 106 0.18
34 4 0.01
35 12 0.02
36 53 0.09
37 12 0.02
ACGTcount: A:0.31, C:0.16, G:0.33, T:0.21
Consensus pattern (31 bp):
GTGCCACGGAGTCGTGGACTTTGAAAAGAAG
Found at i:3825302 original size:99 final size:97
Alignment explanation
Indices: 3825119--3825448 Score: 384
Period size: 99 Copynumber: 3.4 Consensus size: 97
3825109 GAGTCGCGGA
* * * * *
3825119 CTTTGAAAGGAAGGTGCCACGGAGTCGTGGACTTAAAAGGAACAAGGTGCCATGGGGTTGTGGAC
1 CTTTGAAAAGAAGGTGCCACGGAGTCGCGGACTT-TAAGGAACAAGGTGCCACGGAG-TGTGGAC
*
3825184 TTTAAAAGGGTAAAAGAGTGCCATGGAATTGTGGG
64 -TTAAAAGGGAAAAAGAGTGCCATGGAATTGTGGG
*
3825219 CTTTGAAAAGAAGGTGCCACGGAGTCGCGGACTTTAAGGAACAAGGTGGCACGGAGATGTGGACT
1 CTTTGAAAAGAAGGTGCCACGGAGTCGCGGACTTTAAGGAACAAGGTGCCACGGAG-TGTGGACT
*
3825284 GTAAAAGGGAAAAAGAGTGCCATGGAGTTGTGGG
65 -TAAAAGGGAAAAAGAGTGCCATGGAATTGTGGG
* *
3825318 CTTTGAAAAGAAGGTGCCACGGAGTCACGGACTTTGAAAGG---AAGGTGCCACGGAGTCATGGA
1 CTTTGAAAAGAAGGTGCCACGGAGTCGCGGACTTT--AAGGAACAAGGTGCCACGGAGT-GTGGA
* * *
3825380 CTTAAAA-GGAACAAG-GTGCCA-CGAAGTTGTGGA
63 CTTAAAAGGGAAAAAGAGTGCCATGGAA-TTGTGGG
* * *
3825413 CTTTGAAAAAAAGGATGCCACTGAGTCGTGGACTTT
1 CTTTGAAAAGAAGG-TGCCACGGAGTCGCGGACTTT
3825449 GAGACAAAAC
Statistics
Matches: 204, Mismatches: 20, Indels: 16
0.85 0.08 0.07
Matches are distributed among these distances:
94 2 0.01
95 25 0.12
96 25 0.12
97 6 0.03
98 20 0.10
99 90 0.44
100 32 0.16
101 4 0.02
ACGTcount: A:0.31, C:0.14, G:0.34, T:0.20
Consensus pattern (97 bp):
CTTTGAAAAGAAGGTGCCACGGAGTCGCGGACTTTAAGGAACAAGGTGCCACGGAGTGTGGACTT
AAAAGGGAAAAAGAGTGCCATGGAATTGTGGG
Found at i:3825465 original size:30 final size:29
Alignment explanation
Indices: 3825408--3825634 Score: 283
Period size: 30 Copynumber: 7.4 Consensus size: 29
3825398 CCACGAAGTT
*
3825408 GTGGACTTTGAAAAAAAGGATGCCACTGAGTC
1 GTGGACTTTG-AGAAAA--ATGCCACTGAGTC
*
3825440 GTGGACTTTGAGACAAAACGCCACTGAGTC
1 GTGGACTTTGAGA-AAAATGCCACTGAGTC
3825470 GTGGACTTTGAAGAAAAGGATGCCACTGAGTC
1 GTGGACTTTG-AGAAAA--ATGCCACTGAGTC
3825502 GTGGACTTTGAGATAAAATGCCACTGAGTC
1 GTGGACTTTGAGA-AAAATGCCACTGAGTC
3825532 GTGGACTTTGAGATAAAATGCCACTGAGTC
1 GTGGACTTTGAGA-AAAATGCCACTGAGTC
*
3825562 GTGGACTTTGAAGAAAAGGATGCCATTGAGTC
1 GTGGACTTTG-AGAAAA--ATGCCACTGAGTC
* *
3825594 GTGAACTTTGCGACAAAATGCCACTGAGTC
1 GTGGACTTTGAGA-AAAATGCCACTGAGTC
*
3825624 GTGGGCTTTGA
1 GTGGACTTTGA
3825635 AAAGAAGGTG
Statistics
Matches: 176, Mismatches: 10, Indels: 20
0.85 0.05 0.10
Matches are distributed among these distances:
30 101 0.57
31 13 0.07
32 62 0.35
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (29 bp):
GTGGACTTTGAGAAAAATGCCACTGAGTC
Found at i:3825535 original size:92 final size:92
Alignment explanation
Indices: 3825364--3825634 Score: 357
Period size: 92 Copynumber: 2.9 Consensus size: 92
3825354 AAAGGAAGGT
* * ** * *
3825364 GCCACGGAGTCATGGACTTAAAAGGAACAAGG-TGCCAC-GAAGTTGTGGACTTTGAAAAAAAGG
1 GCCACTGAGTCGTGGACTTTGAA-GAA-AAGGATGCCACTG-AGTCGTGGACTTTGAGAAAAA--
3825427 ATGCCACTGAGTCGTGGACTTTGAGACAAAAC
61 ATGCCACTGAGTCGTGGACTTTGAGACAAAAC
*
3825459 GCCACTGAGTCGTGGACTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAGATAAAATGCC
1 GCCACTGAGTCGTGGACTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAGAAAAAATGCC
* *
3825524 ACTGAGTCGTGGACTTTGAGATAAAAT
66 ACTGAGTCGTGGACTTTGAGACAAAAC
* * * *
3825551 GCCACTGAGTCGTGGACTTTGAAGAAAAGGATGCCATTGAGTCGTGAACTTTGCGACAAAATGCC
1 GCCACTGAGTCGTGGACTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAGAAAAAATGCC
*
3825616 ACTGAGTCGTGGGCTTTGA
66 ACTGAGTCGTGGACTTTGA
3825635 AAAGAAGGTG
Statistics
Matches: 160, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
92 109 0.68
93 4 0.03
94 27 0.17
95 20 0.12
ACGTcount: A:0.31, C:0.18, G:0.29, T:0.23
Consensus pattern (92 bp):
GCCACTGAGTCGTGGACTTTGAAGAAAAGGATGCCACTGAGTCGTGGACTTTGAGAAAAAATGCC
ACTGAGTCGTGGACTTTGAGACAAAAC
Found at i:3825955 original size:8 final size:8
Alignment explanation
Indices: 3825932--3825977 Score: 65
Period size: 8 Copynumber: 5.6 Consensus size: 8
3825922 GATGCAAATA
*
3825932 ATGATGTT
1 ATGATGTC
*
3825940 ATTGATGTT
1 A-TGATGTC
3825949 ATGATGTC
1 ATGATGTC
3825957 ATGATGTC
1 ATGATGTC
3825965 ATGATGTC
1 ATGATGTC
3825973 ATGAT
1 ATGAT
3825978 TACAGCACAA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
8 28 0.78
9 8 0.22
ACGTcount: A:0.26, C:0.07, G:0.24, T:0.43
Consensus pattern (8 bp):
ATGATGTC
Found at i:3826811 original size:17 final size:16
Alignment explanation
Indices: 3826791--3826835 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
3826781 GGGTTTTTCC
3826791 TTTTCTTTTATTTTTGG
1 TTTT-TTTTATTTTTGG
*
3826808 TTTTGTTTT-TTTTTTG
1 TTTT-TTTTATTTTTGG
3826824 TTTTTTTTATTT
1 TTTTTTTTATTT
3826836 ATTTTTTTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 4 0.16
16 13 0.52
17 8 0.32
ACGTcount: A:0.04, C:0.02, G:0.09, T:0.84
Consensus pattern (16 bp):
TTTTTTTTATTTTTGG
Found at i:3834176 original size:52 final size:52
Alignment explanation
Indices: 3834091--3834215 Score: 214
Period size: 52 Copynumber: 2.4 Consensus size: 52
3834081 ATGTGAAAAG
*
3834091 TTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
* * *
3834143 TTGCATGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCTAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
3834195 TTGCCTGCATGTATCGATACA
1 TTGCCTGCATGTATCGATACA
3834216 AAGATTAGTG
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 68 1.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
Found at i:3834228 original size:52 final size:52
Alignment explanation
Indices: 3834091--3834235 Score: 202
Period size: 52 Copynumber: 2.8 Consensus size: 52
3834081 ATGTGAAAAG
* *
3834091 TTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACAATTATTAGTGTATCGATACATCTGGGCAAAT
* * * *
3834143 TTGCATGCATGTATCGATAC-ATTTTATAATGTATCGATACATCTGGGCTAAT
1 TTGCCTGCATGTATCGATACAATTAT-TAGTGTATCGATACATCTGGGCAAAT
**
3834195 TTGCCTGCATGTATCGATACAAAGATTAGTGTATCGATACA
1 TTGCCTGCATGTATCGATACAATTATTAGTGTATCGATACA
3834236 ATGTATCGAT
Statistics
Matches: 80, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
51 2 0.03
52 76 0.95
53 2 0.03
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.35
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACAATTATTAGTGTATCGATACATCTGGGCAAAT
Found at i:3834242 original size:13 final size:13
Alignment explanation
Indices: 3834224--3834248 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3834214 CAAAGATTAG
3834224 TGTATCGATACAA
1 TGTATCGATACAA
3834237 TGTATCGATACA
1 TGTATCGATACA
3834249 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3834351 original size:20 final size:19
Alignment explanation
Indices: 3834291--3834361 Score: 108
Period size: 19 Copynumber: 3.7 Consensus size: 19
3834281 TAGCTTAAAT
*
3834291 TGTATCGATATGAA-ACTTA
1 TGTATCGATA-CAACACTTA
3834310 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
3834329 TGTATCGATACAACACTTTA
1 TGTATCGATACAACAC-TTA
3834349 TGTATCGATACAA
1 TGTATCGATACAA
3834362 ATCATTGAAA
Statistics
Matches: 49, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
18 2 0.04
19 31 0.63
20 16 0.33
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.34
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:3841844 original size:20 final size:19
Alignment explanation
Indices: 3841798--3841854 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
3841788 TTGTATCGAA
* *
3841798 ACATTGTATTGATACATGT
1 ACATTGTATCGATACATGG
*
3841817 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATGG
3841836 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
3841855 AAACTGGCAG
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
19 17 0.52
20 16 0.48
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.37
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:3850016 original size:31 final size:30
Alignment explanation
Indices: 3849975--3850055 Score: 105
Period size: 28 Copynumber: 2.8 Consensus size: 30
3849965 AAATAAATTT
*
3849975 TTATCTAGGGGGAGAAAATCTTTTTAACCGA
1 TTATCAAGGGGGAGAAAAT-TTTTTAACCGA
*
3850006 TTATCAAGGGGAAG-AAA-TTTTTAACCGA
1 TTATCAAGGGGGAGAAAATTTTTTAACCGA
*
3850034 TTACCAAGGGGGA-AAAATTTTT
1 TTATCAAGGGGGAGAAAATTTTT
3850056 ATAAGCCTTA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
28 25 0.57
29 4 0.09
30 3 0.07
31 12 0.27
ACGTcount: A:0.36, C:0.11, G:0.22, T:0.31
Consensus pattern (30 bp):
TTATCAAGGGGGAGAAAATTTTTTAACCGA
Found at i:3850720 original size:13 final size:13
Alignment explanation
Indices: 3850699--3850728 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
3850689 CAACACATGG
*
3850699 TACATTGTATCGA
1 TACAATGTATCGA
3850712 TACAATGTATCGA
1 TACAATGTATCGA
3850725 TACA
1 TACA
3850729 TGATGAATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (13 bp):
TACAATGTATCGA
Found at i:3850730 original size:33 final size:33
Alignment explanation
Indices: 3850684--3850748 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
3850674 TACCACTGTT
*
3850684 TGTATCAACACATGGT-ACATTGTATCGATACAA
1 TGTATCAACACATGATGA-ATTGTATCGATACAA
* *
3850717 TGTATCGATACATGATGAATTGTATCGATACA
1 TGTATCAACACATGATGAATTGTATCGATACA
3850749 TTGTTTCTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 27 0.96
34 1 0.04
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.32
Consensus pattern (33 bp):
TGTATCAACACATGATGAATTGTATCGATACAA
Found at i:3857006 original size:16 final size:15
Alignment explanation
Indices: 3856987--3857031 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
3856977 CGTTATTCTC
3856987 AAAAAGCAAAACAAAA
1 AAAAAGCAAAA-AAAA
*
3857003 AAAAAG-AAAAAAAC
1 AAAAAGCAAAAAAAA
*
3857017 AAAAACCAAAAAAAA
1 AAAAAGCAAAAAAAA
3857032 GAATACAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
14 8 0.32
15 11 0.44
16 6 0.24
ACGTcount: A:0.84, C:0.11, G:0.04, T:0.00
Consensus pattern (15 bp):
AAAAAGCAAAAAAAA
Found at i:3857027 original size:21 final size:21
Alignment explanation
Indices: 3856987--3857042 Score: 64
Period size: 20 Copynumber: 2.8 Consensus size: 21
3856977 CGTTATTCTC
3856987 AAAAAGCAAAACAAAAA--AAA
1 AAAAAG-AAAACAAAAACCAAA
*
3857007 AGAAA-AAAACAAAAACCAAA
1 AAAAAGAAAACAAAAACCAAA
*
3857027 AAAAAGAATACAAAAA
1 AAAAAGAAAACAAAAA
3857043 GGGAGGGGTC
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
18 10 0.33
20 11 0.37
21 9 0.30
ACGTcount: A:0.82, C:0.11, G:0.05, T:0.02
Consensus pattern (21 bp):
AAAAAGAAAACAAAAACCAAA
Found at i:3858440 original size:28 final size:28
Alignment explanation
Indices: 3858338--3859090 Score: 727
Period size: 28 Copynumber: 26.7 Consensus size: 28
3858328 GTCAATAGGA
* * *
3858338 CACCTTTTCAAATCCCCCGAGTCAGTGG
1 CACCTTTTCAAAGCCCACAAGTCAGTGG
* *
3858366 CATCCCTTTTCAAAACCCACATGTCAGTGG
1 CA--CCTTTTCAAAGCCCACAAGTCAGTGG
*
3858396 CATCCCTTTTTAAAGCCCACAAGTCAGTGG
1 CA--CCTTTTCAAAGCCCACAAGTCAGTGG
* *
3858426 CACCTTTTCAAAGCCCACAGGTCAATGG
1 CACCTTTTCAAAGCCCACAAGTCAGTGG
* *
3858454 CATCC-TTTCAAAGCCTACAAGTCAATGG
1 CA-CCTTTTCAAAGCCCACAAGTCAGTGG
* *
3858482 CATCTTTTCAAAACCCACAAGTCAGTGG
1 CACCTTTTCAAAGCCCACAAGTCAGTGG
*
3858510 CATCC-TTTCAAAGGCCACAAGTCAGTGG
1 CA-CCTTTTCAAAGCCCACAAGTCAGTGG
*
3858538 CACCTTTTTAAAGCCCACAAGTCAGTGG
1 CACCTTTTCAAAGCCCACAAGTCAGTGG
*
3858566 CATCCTTTT-AGAGCCCACAAGTCAGTGG
1 CA-CCTTTTCAAAGCCCACAAGTCAGTGG
* *
3858594 CATCTTTT-AAGAGCCTACAAGTCAGTGG
1 CACCTTTTCAA-AGCCCACAAGTCAGTGG
3858622 CATCC-TTT------CCACAAGTCAGTGG
1 CA-CCTTTTCAAAGCCCACAAGTCAGTGG
*
3858644 CATCCTTTT-AAAGCCCAAAAGTCAGTGG
1 CA-CCTTTTCAAAGCCCACAAGTCAGTGG
**
3858672 CATTTTTTCAAAGCCCACGAA-TCAGTGG
1 CACCTTTTCAAAGCCCAC-AAGTCAGTGG
3858700 CATCCCTTTTCAAAGCCCACAAGTCAGTGG
1 CA--CCTTTTCAAAGCCCACAAGTCAGTGG
3858730 CATCC-TTTCAAAGCCCACAAGTCAGTGG
1 CA-CCTTTTCAAAGCCCACAAGTCAGTGG
* *
3858758 CATCC-TTTCAGAGCTCACAAGTCAGTGG
1 CA-CCTTTTCAAAGCCCACAAGTCAGTGG
3858786 CATCC-TTTCAGAA-CCCACAAGTCAGTGG
1 CA-CCTTTTCA-AAGCCCACAAGTCAGTGG
* *
3858814 CAACCCTTTTCAAAGCCTACAAGCCAGTGG
1 C-A-CCTTTTCAAAGCCCACAAGTCAGTGG
** *
3858844 CACC-TTTC-AAGCCCGTAAGTCAATGG
1 CACCTTTTCAAAGCCCACAAGTCAGTGG
* * *
3858870 CACCTTTTTAAAGCCCGCAATTCAGTGG
1 CACCTTTTCAAAGCCCACAAGTCAGTGG
**
3858898 CACCTTTTCAAAGCCTGCAAGTCAGTGG
1 CACCTTTTCAAAGCCCACAAGTCAGTGG
*
3858926 CATCC-TTTCAAAGCCCACAAGTCAATGG
1 CA-CCTTTTCAAAGCCCACAAGTCAGTGG
* * *
3858954 CATCATTTCAAAGCCCATAAGTCAGTGG
1 CACCTTTTCAAAGCCCACAAGTCAGTGG
* * *
3858982 CACCCTTTCAAAACTCACAAGTCAGTGG
1 CACCTTTTCAAAGCCCACAAGTCAGTGG
* *
3859010 TACTTTTTCAAAGCCCACAAGTCAGTGG
1 CACCTTTTCAAAGCCCACAAGTCAGTGG
* * **
3859038 CAATCTCTTCTAAAGCCCATACAAGTTGGTGG
1 C-ACCTTTTC-AAAGCCC--ACAAGTCAGTGG
3859070 CAACCTTTTCTAAAGCCCACA
1 C-ACCTTTTC-AAAGCCCACA
3859091 CGAGTTGGTG
Statistics
Matches: 616, Mismatches: 77, Indels: 62
0.82 0.10 0.08
Matches are distributed among these distances:
22 18 0.03
23 3 0.00
26 17 0.03
27 21 0.03
28 398 0.65
29 30 0.05
30 103 0.17
32 26 0.04
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (28 bp):
CACCTTTTCAAAGCCCACAAGTCAGTGG
Found at i:3858638 original size:22 final size:22
Alignment explanation
Indices: 3858610--3858651 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
3858600 TTAAGAGCCT
3858610 ACAAGTCAGTGGCATCCTTTCC
1 ACAAGTCAGTGGCATCCTTTCC
3858632 ACAAGTCAGTGGCATCCTTT
1 ACAAGTCAGTGGCATCCTTT
3858652 TAAAGCCCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (22 bp):
ACAAGTCAGTGGCATCCTTTCC
Found at i:3859070 original size:32 final size:31
Alignment explanation
Indices: 3859025--3859114 Score: 108
Period size: 32 Copynumber: 2.8 Consensus size: 31
3859015 TTTCAAAGCC
**
3859025 CACAAGTCAGTGGCAATCTCTTCTAAAGCCCA
1 CACAAGTTGGTGGCAA-CTCTTCTAAAGCCCA
* *
3859057 TACAAGTTGGTGGCAACCTTTTCTAAAGCCCA
1 CACAAGTTGGTGGCAA-CTCTTCTAAAGCCCA
* *
3859089 CACGAGTTGGTGGCAACCCTTCTAAA
1 CACAAGTTGGTGGCAACTCTTCTAAA
3859115 CCAAATGTCA
Statistics
Matches: 49, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
31 8 0.16
32 41 0.84
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (31 bp):
CACAAGTTGGTGGCAACTCTTCTAAAGCCCA
Found at i:3860123 original size:46 final size:46
Alignment explanation
Indices: 3860037--3860125 Score: 142
Period size: 46 Copynumber: 1.9 Consensus size: 46
3860027 GTATGGAAAA
*
3860037 ATCATATTTTTACCTAGATGTATCGATACATGTATGAATGTATTGT
1 ATCATATTTTTACCTAGATGTATCGATACATGTATCAATGTATTGT
* * *
3860083 ATCATATTTTTACCTAGATGTATTGATACATTTTTCAATGTAT
1 ATCATATTTTTACCTAGATGTATCGATACATGTATCAATGTAT
3860126 CGATACATGT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.30, C:0.11, G:0.12, T:0.46
Consensus pattern (46 bp):
ATCATATTTTTACCTAGATGTATCGATACATGTATCAATGTATTGT
Found at i:3860176 original size:20 final size:19
Alignment explanation
Indices: 3860100--3860174 Score: 78
Period size: 20 Copynumber: 3.8 Consensus size: 19
3860090 TTTTACCTAG
*
3860100 ATGTATTGATACATTTTTCA
1 ATGTATCGATACATTTTT-A
* *
3860120 ATGTATCGATACATGTATGA
1 ATGTATCGATACAT-TTTTA
* *
3860140 ATGTGTTGATACATTCTTTA
1 ATGTATCGATACATT-TTTA
3860160 ATGTATCGATACATT
1 ATGTATCGATACATT
3860175 CTGTCATTTT
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
19 1 0.02
20 41 0.93
21 2 0.05
ACGTcount: A:0.31, C:0.11, G:0.15, T:0.44
Consensus pattern (19 bp):
ATGTATCGATACATTTTTA
Found at i:3866471 original size:32 final size:35
Alignment explanation
Indices: 3866428--3866509 Score: 98
Period size: 32 Copynumber: 2.4 Consensus size: 35
3866418 TAGCAGTAGC
* *
3866428 TTTGTAGCGATACATT-GTATCGATACA-ACACT-
1 TTTGTATCGATACATTAGTATCAATACATACACTG
**
3866460 TTTGTATCGATACATTGAGTATCAATACATTTACTG
1 TTTGTATCGATACATT-AGTATCAATACATACACTG
3866496 TTTGTATCGATACA
1 TTTGTATCGATACA
3866510 AATCGTTAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
32 15 0.36
34 10 0.24
35 3 0.07
36 14 0.33
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.39
Consensus pattern (35 bp):
TTTGTATCGATACATTAGTATCAATACATACACTG
Found at i:3867255 original size:49 final size:48
Alignment explanation
Indices: 3867189--3868112 Score: 643
Period size: 48 Copynumber: 19.9 Consensus size: 48
3867179 GTTAAACATA
* * * * *
3867189 CCAATACGCTAATTCAAGACCAACGATATTGCACTAAAGGATGAAGGTG
1 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTAAA-GATGAAGGTG
* * * *** *
3867238 CTAATGTGCTGATTCAAGGCCAGCGACATTTGTTTTAAAAATGACGAAGGTG
1 CCAATATGCTGATTCAAGGCCAGCGATA-TTGGACT--AAA-GATGAAGGTG
*
3867290 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTT
1 CCAATATGCTGATTCAAGGCCAGCGATATTGGAC-TAAAGATGAAGGTG
* * * * *
3867339 CCAATGTCCTGATTCAAGGCTAGCGACATTGGTACTAAAGATAAAGGTG
1 CCAATATGCTGATTCAAGGCCAGCGATATTGG-ACTAAAGATGAAGGTG
* *
3867388 CCAATATGCTGATTCAAAGCCAGCGATATTGGACT-----TAAAGGTG
1 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTAAAGATGAAGGTG
* * ** * * * * * *
3867431 CCAATGTGCTAAGACAAGGCTAGCAACACTGGTCTTAAAGA-CAAGGTG
1 CCAATATGCTGATTCAAGGCCAGCGATATTGGAC-TAAAGATGAAGGTG
*
3867479 CCAATATGCTGATTCAAGGCCAGCGATATTGGACT-----TAAAGGTG
1 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTAAAGATGAAGGTG
* * * * *
3867522 CCAATGTGCTGATTCAAGGCCAGCGACATTGGTCATAAAGA-CAAGATG
1 CCAATATGCTGATTCAAGGCCAGCGATATTGGAC-TAAAGATGAAGGTG
* *
3867570 CCAATATGTTGATTCAAGGCCAGCGATATTGGACT-----TAAAGGTG
1 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTAAAGATGAAGGTG
* * * *
3867613 CCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGA-CAAGGTG
1 CCAATATGCTGATTCAAGGCCAGCGATATTGGAC-TAAAGATGAAGGTG
*
3867661 CCAATATGCTGATTCAAGGCCAGCGATATTGGACT-----TAAAGGTG
1 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTAAAGATGAAGGTG
* * * * * *
3867704 CCAATGTACTGATTCAAGGCCAACGACATTGGTCTTAAAGA-CAAGGTG
1 CCAATATGCTGATTCAAGGCCAGCGATATTGGAC-TAAAGATGAAGGTG
*
3867752 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAA-AT----GTG
1 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTAAAGATGAAGGTG
* ** * * *
3867795 CCAATGTGCTGATTCAAGGCCAATGACATTGGTCTTAAAGATGACAAAGGCG
1 CCAATATGCTGATTCAAGGCCAGCGATATTGGAC-TAAAGATG---AAGGTG
* * * *
3867847 CCAATATGTTGATTTAAGGCTAGCGATATTGGGCT-----T--A--TG
1 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTAAAGATGAAGGTG
* * *
3867886 CTAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGAT-AAGGTG
1 CCAATATGCTGATTCAAGGCCAGCGATATTGGAC-TAAAGATGAAGGTG
*
3867934 CCAATATGCTGATTCAAGGCCA-CGGATATTGGGCTTAAAGATGAAGGTG
1 CCAATATGCTGATTCAAGGCCAGC-GATATTGGAC-TAAAGATGAAGGTG
* *
3867983 CCAATATGCTAATTCAAGGCCAGCGATATTGGGCT-----T----GTG
1 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTAAAGATGAAGGTG
* * ** * * * *
3868022 CCATTGTGCTGATTCAAGGCCAATGACATTGGTCTTAAAGA-CAAAGTG
1 CCAATATGCTGATTCAAGGCCAGCGATATTGGAC-TAAAGATGAAGGTG
*
3868070 CCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTAAAGATG
1 CCAATATGCTGATTCAAGGCCAGCGATATTGGAC-TAAAGATG
3868113 CCACGAAGTT
Statistics
Matches: 686, Mismatches: 124, Indels: 130
0.73 0.13 0.14
Matches are distributed among these distances:
39 59 0.09
40 2 0.00
41 1 0.00
43 172 0.25
44 7 0.01
45 3 0.00
46 3 0.00
47 7 0.01
48 219 0.32
49 133 0.19
50 10 0.01
51 4 0.01
52 66 0.10
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (48 bp):
CCAATATGCTGATTCAAGGCCAGCGATATTGGACTAAAGATGAAGGTG
Found at i:3867501 original size:91 final size:91
Alignment explanation
Indices: 3867232--3868014 Score: 1011
Period size: 91 Copynumber: 8.4 Consensus size: 91
3867222 CTAAAGGATG
* * *
3867232 AAGGTGCTAATGTGCTGATTCAAGGCCAGCGACATTTGTTTTAAAAATGACGAAGGTGCCAATAT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT--AAA-GAC-AAGGTGCCAATAT
3867297 GCTGATTCAAGGCCAGCGATATTGGACTTAAAGA
62 GCTGATTCAAGGCCAGCGATATTGGACTT----A
* * * *
3867331 TGAAGGTTCCAATGTCCTGATTCAAGGCTAGCGACATTGGTAC-TAAAGATAAAGGTGCCAATAT
1 --AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGT-CTTAAAGA-CAAGGTGCCAATAT
*
3867395 GCTGATTCAAAGCCAGCGATATTGGACTTA
62 GCTGATTCAAGGCCAGCGATATTGGACTTA
* ** * * *
3867425 AAGGTGCCAATGTGCTAAGACAAGGCTAGCAACACTGGTCTTAAAGACAAGGTGCCAATATGCTG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTG
3867490 ATTCAAGGCCAGCGATATTGGACTTA
66 ATTCAAGGCCAGCGATATTGGACTTA
* * *
3867516 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCATAAAGACAAGATGCCAATATGTTG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTG
3867581 ATTCAAGGCCAGCGATATTGGACTTA
66 ATTCAAGGCCAGCGATATTGGACTTA
3867607 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTG
3867672 ATTCAAGGCCAGCGATATTGGACTTA
66 ATTCAAGGCCAGCGATATTGGACTTA
* *
3867698 AAGGTGCCAATGTACTGATTCAAGGCCAACGACATTGGTCTTAAAGACAAGGTGCCAATATGCTG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTG
3867763 ATTCAAGGCCAGCGATATTGGACTTA
66 ATTCAAGGCCAGCGATATTGGACTTA
* ** *
3867789 AATGTGCCAATGTGCTGATTCAAGGCCAATGACATTGGTCTTAAAGATGACAAAGGCGCCAATAT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT-AA-A-GAC-AAGGTGCCAATAT
* * * *
3867854 GTTGATTTAAGGCTAGCGATATTGGGCTT-
62 GCTGATTCAAGGCCAGCGATATTGGACTTA
* * *
3867883 -A--TGCTAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAGGTGCCAATATGCTG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTG
*
3867945 ATTCAAGGCCA-CGGATATTGGGCTTAAAGA
66 ATTCAAGGCCAGC-GATATTGGACTT----A
* * *
3867975 TGAAGGTGCCAATATGCTAATTCAAGGCCAGCGATATTGG
1 --AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGG
3868015 GCTTGTGCCA
Statistics
Matches: 613, Mismatches: 51, Indels: 40
0.87 0.07 0.06
Matches are distributed among these distances:
86 1 0.00
87 36 0.06
88 2 0.00
89 1 0.00
90 2 0.00
91 375 0.61
92 40 0.07
93 2 0.00
94 4 0.01
95 38 0.06
97 31 0.05
98 43 0.07
99 3 0.00
101 35 0.06
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (91 bp):
AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTG
ATTCAAGGCCAGCGATATTGGACTTA
Found at i:3868102 original size:87 final size:88
Alignment explanation
Indices: 3867931--3868105 Score: 262
Period size: 87 Copynumber: 2.0 Consensus size: 88
3867921 TAAAGATAAG
* * * *
3867931 GTGCCAATATGCTGATTCAAGGCCACGGATATTGGGCTTAAAGATGAAGGTGCCAATATGCTAAT
1 GTGCCAATATGCTGATTCAAGGCCAAGGACATTGGGCTTAAAGATCAAAGTGCCAATATGCTAAT
3867996 TCAAGGCCAGCGATATTGGGCTT
66 TCAAGGCCAGCGATATTGGGCTT
* * * * *
3868019 GTGCCATTGTGCTGATTCAAGGCCAATGACATTGGTCTTAAAGA-CAAAGTGCCAATATGCTGAT
1 GTGCCAATATGCTGATTCAAGGCCAAGGACATTGGGCTTAAAGATCAAAGTGCCAATATGCTAAT
3868083 TCAAGGCCAGCGATATTGGGCTT
66 TCAAGGCCAGCGATATTGGGCTT
3868106 AAAGATGCCA
Statistics
Matches: 78, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
87 40 0.51
88 38 0.49
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (88 bp):
GTGCCAATATGCTGATTCAAGGCCAAGGACATTGGGCTTAAAGATCAAAGTGCCAATATGCTAAT
TCAAGGCCAGCGATATTGGGCTT
Found at i:3868175 original size:27 final size:27
Alignment explanation
Indices: 3868137--3868340 Score: 230
Period size: 27 Copynumber: 7.2 Consensus size: 27
3868127 CTTGTGAGAA
* *
3868137 AAAAGGGATGCCACGGAGGTGTGGGCTT
1 AAAAGGG-TGCCACGGAGTTGTGGACTT
3868165 AAAAGGGTGCCACGGAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
**
3868192 AAAAGGGTGCCACAAAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
3868219 AAAAGGAACAAGGTGCCACGGAGTTGTGGACTTT
1 AAAA-G-----GGTGCCACGGAGTTGTGGAC-TT
*
3868253 AAAAGGGTGCCACGGAGTTGTGGGCTTT
1 AAAAGGGTGCCACGGAGTTGTGGAC-TT
* *
3868281 AAAAGAGTGCCACAGAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
**
3868308 AAAAGGGTG-CATAGAGTTGTGGACTTT
1 AAAAGGGTGCCACGGAGTTGTGGAC-TT
3868335 AAAAGG
1 AAAAGG
3868341 AACAAGGTGC
Statistics
Matches: 156, Mismatches: 12, Indels: 17
0.84 0.06 0.09
Matches are distributed among these distances:
26 14 0.09
27 65 0.42
28 52 0.33
33 19 0.12
34 6 0.04
ACGTcount: A:0.30, C:0.13, G:0.35, T:0.22
Consensus pattern (27 bp):
AAAAGGGTGCCACGGAGTTGTGGACTT
Found at i:3868305 original size:89 final size:87
Alignment explanation
Indices: 3868145--3868313 Score: 275
Period size: 89 Copynumber: 1.9 Consensus size: 87
3868135 AAAAAAGGGA
* *
3868145 TGCCACGGAGGTGTGGGCTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAAAGT
1 TGCCACGGAGGTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGAGTGCCACAAAGT
3868210 TGTGGACTTAAAAGGAACAAGG
66 TGTGGACTTAAAAGGAACAAGG
* * *
3868232 TGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGGCTTTAAAAGAGTGCCACAGA
1 TGCCACGGAGGTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGAGTGCCACAAA
3868297 GTTGTGGACTTAAAAGG
64 GTTGTGGACTTAAAAGG
3868314 GTGCATAGAG
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
87 16 0.21
88 26 0.35
89 33 0.44
ACGTcount: A:0.28, C:0.15, G:0.35, T:0.22
Consensus pattern (87 bp):
TGCCACGGAGGTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGAGTGCCACAAAGT
TGTGGACTTAAAAGGAACAAGG
Found at i:3868341 original size:116 final size:116
Alignment explanation
Indices: 3868137--3868372 Score: 377
Period size: 116 Copynumber: 2.0 Consensus size: 116
3868127 CTTGTGAGAA
* *
3868137 AAAAGGGATGCCACGGAGGTGTGGGCTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGC
1 AAAAGGGATGCCACGGAGGTGTGGGCTTAAAAGAGTGCCACAGAGTTGTGGACTTAAAAGGGTGC
* *
3868202 CACAAAGTTGTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGACTTT
66 CACAAAGTTGTGGACTTAAAAGGAACAAGGTGCCACAGACTTGTGGACTTT
*
3868253 AAAAGGG-TGCCACGGAGTTGTGGGCTTTAAAAGAGTGCCACAGAGTTGTGGACTTAAAAGGGTG
1 AAAAGGGATGCCACGGAGGTGTGGGC-TTAAAAGAGTGCCACAGAGTTGTGGACTTAAAAGGGTG
* *
3868317 -CATAGAGTTGTGGACTTTAAAAGGAACAAGGTGCCACAGACTTGTGGACTTT
65 CCACAAAGTTGTGGAC-TTAAAAGGAACAAGGTGCCACAGACTTGTGGACTTT
3868369 AAAA
1 AAAA
3868373 AGAAAAAGAT
Statistics
Matches: 111, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
115 30 0.27
116 81 0.73
ACGTcount: A:0.31, C:0.14, G:0.33, T:0.22
Consensus pattern (116 bp):
AAAAGGGATGCCACGGAGGTGTGGGCTTAAAAGAGTGCCACAGAGTTGTGGACTTAAAAGGGTGC
CACAAAGTTGTGGACTTAAAAGGAACAAGGTGCCACAGACTTGTGGACTTT
Found at i:3868362 original size:88 final size:85
Alignment explanation
Indices: 3868137--3868340 Score: 249
Period size: 89 Copynumber: 2.4 Consensus size: 85
3868127 CTTGTGAGAA
* * * * *
3868137 AAAAGG-GATGCCACGGAGGTGTGGGC-TTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGG
1 AAAAGGAGGTGCCACAGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGAG
3868199 TGCCACAAAGTTGTGGACTT
66 TGCCACAAAGTTGTGGACTT
* *
3868219 AAAAGGAACAAGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGGCTTTAAA
1 AAAAGG----AGGTGCCACAGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAA
*
3868284 AGAGTGCCACAGAGTTGTGGACTT
62 AGAGTGCCACAAAGTTGTGGACTT
*
3868308 AAAA-G-GGTG-CATAGAGTTGTGGACTTTAAAAGG
1 AAAAGGAGGTGCCACAGAGTTGTGGACTTTAAAAGG
3868341 AACAAGGTGC
Statistics
Matches: 107, Mismatches: 8, Indels: 14
0.83 0.06 0.11
Matches are distributed among these distances:
82 28 0.26
83 4 0.04
87 17 0.16
88 27 0.25
89 31 0.29
ACGTcount: A:0.30, C:0.13, G:0.35, T:0.22
Consensus pattern (85 bp):
AAAAGGAGGTGCCACAGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGAG
TGCCACAAAGTTGTGGACTT
Found at i:3868471 original size:62 final size:64
Alignment explanation
Indices: 3868321--3868527 Score: 172
Period size: 62 Copynumber: 3.2 Consensus size: 64
3868311 AGGGTGCATA
* * * * *
3868321 GAGTTGTGGACTTTAAAAGGAACAAGGTGCCACAGACTTGTGGACTTTAAAAAGAAAAAGATACC
1 GAGTCGTGGACTTTAAAAAGAAAAAGGTGCCACAG--TTGTGGACTTT-AGAAG-AAAAGATGCC
*
3868386 ACG
62 ACT
* * * ** *
3868389 GAATGGTGGGCTTTGTAAAGAAAAAGGTGCCA-AGTTGTGGGCTTT-GAAGAAAAGATGCCACT
1 GAGTCGTGGACTTTAAAAAGAAAAAGGTGCCACAGTTGTGGACTTTAGAAGAAAAGATGCCACT
* * * * *
3868451 GAGTCGTGGACTTTAAAAAG--AGA-TTGCCACTGAGTTGTGGACTTTGGAGGAAAAAATGCCAC
1 GAGTCGTGGACTTTAAAAAGAAAAAGGTGCCAC--AGTTGTGGACTTTAGAAGAAAAGATGCCAC
3868513 T
64 T
3868514 GAGTCGTGGACTTT
1 GAGTCGTGGACTTT
3868528 GGGACAAAAT
Statistics
Matches: 114, Mismatches: 21, Indels: 13
0.77 0.14 0.09
Matches are distributed among these distances:
59 5 0.04
60 2 0.02
62 38 0.33
63 32 0.28
65 10 0.09
67 2 0.02
68 25 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (64 bp):
GAGTCGTGGACTTTAAAAAGAAAAAGGTGCCACAGTTGTGGACTTTAGAAGAAAAGATGCCACT
Found at i:3868539 original size:30 final size:31
Alignment explanation
Indices: 3868437--3868588 Score: 152
Period size: 31 Copynumber: 4.9 Consensus size: 31
3868427 GGGCTTTGAA
3868437 GAAAAG-ATGCCACTGAGTCGTGGACTTT--
1 GAAAAGAATGCCACTGAGTCGTGGACTTTGG
* *
3868465 AAAAAGAGATTGCCACTGAGTTGTGGACTTTGGAG
1 GAAAAGA-A-TGCCACTGAGTCGTGGACTTT-G-G
3868500 GAAAA-AATGCCACTGAGTCGTGGACTTTGG
1 GAAAAGAATGCCACTGAGTCGTGGACTTTGG
* * * *
3868530 GACAA-AATGCCACTAAGTCGTGGGCTTTGA
1 GAAAAGAATGCCACTGAGTCGTGGACTTTGG
* * *
3868560 GAAGAGATTGCCACTAAGTCGTGGACTTT
1 GAAAAGAATGCCACTGAGTCGTGGACTTT
3868589 AAGAAGGTAT
Statistics
Matches: 104, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
28 5 0.05
30 31 0.30
31 42 0.40
32 20 0.19
33 1 0.01
34 1 0.01
35 4 0.04
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (31 bp):
GAAAAGAATGCCACTGAGTCGTGGACTTTGG
Found at i:3868594 original size:31 final size:31
Alignment explanation
Indices: 3868420--3868594 Score: 142
Period size: 31 Copynumber: 5.6 Consensus size: 31
3868410 AAAAGGTGCC
* * *
3868420 AAGTTGTGGGCTTTGAAGAAAAG-ATGCCACT
1 AAGTCGTGGACTTT-AAGAAGAGAATGCCACT
* * *
3868451 GAGTCGTGGACTTTAAAAAGAGATTGCCACT
1 AAGTCGTGGACTTTAAGAAGAGAATGCCACT
* * * *
3868482 GAGTTGTGGACTTTGGAGGAA-AAAATGCCACT
1 AAGTCGTGGACTTT--AAGAAGAGAATGCCACT
* **
3868514 GAGTCGTGGACTTTGGGACA-A-AATGCCACT
1 AAGTCGTGGACTTTAAGA-AGAGAATGCCACT
* * *
3868544 AAGTCGTGGGCTTTGAGAAGAGATTGCCACT
1 AAGTCGTGGACTTTAAGAAGAGAATGCCACT
3868575 AAGTCGTGGACTTTAAGAAG
1 AAGTCGTGGACTTTAAGAAG
3868595 GTATTTGAAG
Statistics
Matches: 119, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
29 1 0.01
30 34 0.29
31 59 0.50
32 22 0.18
33 3 0.03
ACGTcount: A:0.30, C:0.15, G:0.30, T:0.25
Consensus pattern (31 bp):
AAGTCGTGGACTTTAAGAAGAGAATGCCACT
Found at i:3871261 original size:13 final size:13
Alignment explanation
Indices: 3871243--3871268 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3871233 CAATTTTTTG
3871243 TGTATCGATACAT
1 TGTATCGATACAT
3871256 TGTATCGATACAT
1 TGTATCGATACAT
3871269 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3874906 original size:9 final size:9
Alignment explanation
Indices: 3874892--3874930 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
3874882 TCAACCATCA
*
3874892 AAGATGGTG
1 AAGATGATG
3874901 AAGATGATG
1 AAGATGATG
*
3874910 ATGATGATG
1 AAGATGATG
*
3874919 ATGATGATG
1 AAGATGATG
3874928 AAG
1 AAG
3874931 TTGACTCGGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.38, C:0.00, G:0.36, T:0.26
Consensus pattern (9 bp):
AAGATGATG
Found at i:3874911 original size:3 final size:3
Alignment explanation
Indices: 3874903--3874928 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
3874893 AGATGGTGAA
3874903 GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GA
3874929 AGTTGACTCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.31
Consensus pattern (3 bp):
GAT
Found at i:3878596 original size:21 final size:20
Alignment explanation
Indices: 3878568--3878613 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
3878558 AAGGTGCTGG
*
3878568 ACATGCTCTAAATGCATGAA
1 ACATGCTCAAAATGCATGAA
3878588 ACATAGCTCAAAATGCATGAA
1 ACAT-GCTCAAAATGCATGAA
*
3878609 TCATG
1 ACATG
3878614 GGTTGTTAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.41, C:0.20, G:0.15, T:0.24
Consensus pattern (20 bp):
ACATGCTCAAAATGCATGAA
Found at i:3886947 original size:16 final size:17
Alignment explanation
Indices: 3886910--3886948 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
3886900 ATTAAATTGA
* *
3886910 AAAATTGAAACTTTGTG
1 AAAATTGAAACTGTGGG
3886927 AAAATTGAAA-TGTGGG
1 AAAATTGAAACTGTGGG
3886943 AAAATT
1 AAAATT
3886949 TGGGAAAAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.46, C:0.03, G:0.21, T:0.31
Consensus pattern (17 bp):
AAAATTGAAACTGTGGG
Found at i:3886955 original size:26 final size:25
Alignment explanation
Indices: 3886916--3886973 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 25
3886906 TTGAAAAATT
* *
3886916 GAAACTTTGTGAAAA-TTGAAATGTGG
1 GAAAATTTGGGAAAAGTT-AAAT-TGG
3886942 GAAAATTTGGGAAAAGTTAAATTGG
1 GAAAATTTGGGAAAAGTTAAATTGG
*
3886967 AAAAATT
1 GAAAATT
3886974 ATGACATGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 9 0.32
26 17 0.61
27 2 0.07
ACGTcount: A:0.45, C:0.02, G:0.24, T:0.29
Consensus pattern (25 bp):
GAAAATTTGGGAAAAGTTAAATTGG
Found at i:3888026 original size:23 final size:22
Alignment explanation
Indices: 3888000--3888064 Score: 58
Period size: 23 Copynumber: 2.9 Consensus size: 22
3887990 AAAAAATTCC
*
3888000 AAAAAAAAAAGAAAAAAAGGCAA
1 AAAAAAAAAACAAAAAAAGG-AA
* * *
3888023 AAAACAAAATCAAAAAAATAGAA
1 AAAAAAAAAACAAAAAAA-GGAA
* *
3888046 AATAAAAAAATAAAAAAAG
1 AAAAAAAAAACAAAAAAAG
3888065 AGCTTTTTAG
Statistics
Matches: 32, Mismatches: 9, Indels: 3
0.73 0.20 0.07
Matches are distributed among these distances:
23 31 0.97
24 1 0.03
ACGTcount: A:0.82, C:0.05, G:0.08, T:0.06
Consensus pattern (22 bp):
AAAAAAAAAACAAAAAAAGGAA
Found at i:3888039 original size:15 final size:15
Alignment explanation
Indices: 3888021--3888061 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
3888011 AAAAAAAGGC
3888021 AAAAA-ACAAAATCAA
1 AAAAATACAAAAT-AA
*
3888036 AAAAATAGAAAATAA
1 AAAAATACAAAATAA
3888051 AAAAATA-AAAA
1 AAAAATACAAAA
3888062 AAGAGCTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 4 0.17
15 14 0.58
16 6 0.25
ACGTcount: A:0.83, C:0.05, G:0.02, T:0.10
Consensus pattern (15 bp):
AAAAATACAAAATAA
Found at i:3888062 original size:15 final size:16
Alignment explanation
Indices: 3888028--3888062 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
3888018 GGCAAAAAAC
*
3888028 AAAATCAAAAAAATAG
1 AAAATCAAAAAAATAA
3888044 AAAAT-AAAAAAATAA
1 AAAATCAAAAAAATAA
3888059 AAAA
1 AAAA
3888063 AGAGCTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 13 0.72
16 5 0.28
ACGTcount: A:0.83, C:0.03, G:0.03, T:0.11
Consensus pattern (16 bp):
AAAATCAAAAAAATAA
Found at i:3888456 original size:16 final size:16
Alignment explanation
Indices: 3888418--3888483 Score: 80
Period size: 16 Copynumber: 4.2 Consensus size: 16
3888408 TTTTAAAAAT
*
3888418 TTCGGGTTATTTT-GG
1 TTCGGGTCATTTTGGG
* *
3888433 TTCAGGTCGTTTTGGG
1 TTCGGGTCATTTTGGG
*
3888449 TTCGGGTCATTTCGGG
1 TTCGGGTCATTTTGGG
*
3888465 TTCGGATCATTTTGGG
1 TTCGGGTCATTTTGGG
3888481 TTC
1 TTC
3888484 AGATTGTTTC
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
15 10 0.24
16 32 0.76
ACGTcount: A:0.08, C:0.14, G:0.33, T:0.45
Consensus pattern (16 bp):
TTCGGGTCATTTTGGG
Found at i:3890408 original size:19 final size:20
Alignment explanation
Indices: 3890384--3890436 Score: 72
Period size: 19 Copynumber: 2.7 Consensus size: 20
3890374 ACATTATGTT
* *
3890384 TTGTATCGATACGTGCTC-A
1 TTGTATCGATACATACTCAA
*
3890403 TTGTATCGATATATACTCAA
1 TTGTATCGATACATACTCAA
3890423 TTGTATCGATACAT
1 TTGTATCGATACAT
3890437 GAAACTGGCA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 15 0.52
20 14 0.48
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (20 bp):
TTGTATCGATACATACTCAA
Found at i:3890524 original size:33 final size:32
Alignment explanation
Indices: 3890467--3890532 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 32
3890457 CTAAGTGAAA
*
3890467 TGTATCAATACATGGGATAATGTATCGATACAT
1 TGTATCAATACATGGGAT-ATGTATCAATACAT
3890500 TGTATCAATACATGAAGGAT-TGTATCAATACAT
1 TGTATCAATACATG--GGATATGTATCAATACAT
3890533 CATGCCCAAC
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
33 26 0.87
35 4 0.13
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (32 bp):
TGTATCAATACATGGGATATGTATCAATACAT
Found at i:3893046 original size:51 final size:51
Alignment explanation
Indices: 3892970--3893105 Score: 182
Period size: 51 Copynumber: 2.7 Consensus size: 51
3892960 TACATTTTCA
* * * * * *
3892970 ATGTACCGATACATGTATGAATGTATTGATACATTCTATCTTTTTACCGAG
1 ATGTATCGATACATTTTTCAATGTATCGATACATTCTATCTTTTTACCCAG
* *
3893021 ATGTATCGATACATTTTTCAATGTATCGATACATTTTGTCTTTTTACCCAG
1 ATGTATCGATACATTTTTCAATGTATCGATACATTCTATCTTTTTACCCAG
* *
3893072 ATGTATTGATACATTTTTCAATGTATCGCTACAT
1 ATGTATCGATACATTTTTCAATGTATCGATACAT
3893106 CTAAAATTAA
Statistics
Matches: 75, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 75 1.00
ACGTcount: A:0.28, C:0.16, G:0.13, T:0.43
Consensus pattern (51 bp):
ATGTATCGATACATTTTTCAATGTATCGATACATTCTATCTTTTTACCCAG
Found at i:3907028 original size:32 final size:35
Alignment explanation
Indices: 3906985--3907066 Score: 98
Period size: 32 Copynumber: 2.4 Consensus size: 35
3906975 TAGCAGTAGC
*
3906985 TTTGTAGCGATACATT-GTATCAATACA-ACACT-
1 TTTGTATCGATACATTAGTATCAATACATACACTG
* **
3907017 TTTGTATCGATACATTGAGTATCGATACATTTACTG
1 TTTGTATCGATACATT-AGTATCAATACATACACTG
3907053 TTTGTATCGATACA
1 TTTGTATCGATACA
3907067 AATTGTTAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
32 15 0.36
34 10 0.24
35 3 0.07
36 14 0.33
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.39
Consensus pattern (35 bp):
TTTGTATCGATACATTAGTATCAATACATACACTG
Found at i:3908219 original size:91 final size:91
Alignment explanation
Indices: 3907941--3909092 Score: 1497
Period size: 91 Copynumber: 12.5 Consensus size: 91
3907931 CTTAAGGATG
* * * * *
3907941 AAGGTGCTAATGTGCTGATTCAAGGCCAGCAACATTTGTTTTAAAAATGACGAAGGTGCTAATAT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT--AAA-GAC-AAGGTGCCAATAT
3908006 GCTGATTCAAGGCCAGCGATATTGGACTTAAAGA
62 GCTGATTCAAGGCCAGCGATATTGGACTT----A
* * * * *
3908040 TGAAGGTTCCAATGTCCTGATTCAAGGCCAACGACATTGGTCCTAAAGATAAAGGTGCCAATATG
1 --AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGA-CAAGGTGCCAATATG
* *
3908105 CTGATTCAAAGCTAGCGATATTGGACTTA
63 CTGATTCAAGGCCAGCGATATTGGACTTA
* ** * *
3908134 AAGGTGCCAATGTGCTAAGACAAGGCCAACGACACTGGTCTTAAAGACAAGGTGCCAATATGCTG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTG
*
3908199 ATTCAAGGCTAGCGATATTGGACTTA
66 ATTCAAGGCCAGCGATATTGGACTTA
*
3908225 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCATAAAGACAAGGTGCCAATATGCTG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTG
3908290 ATTCAAGGCCAGCGATATTGGACTTA
66 ATTCAAGGCCAGCGATATTGGACTTA
* *
3908316 AAGGAGCCAATGCGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTG
*
3908381 ATTCAAGGCCAGTGATATTGGACTTA
66 ATTCAAGGCCAGCGATATTGGACTTA
*
3908407 AAGGTGCCAATGTACTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTG
*
3908472 ATTCAAGGCCAGCGATATTAGACTTA
66 ATTCAAGGCCAGCGATATTGGACTTA
*
3908498 AAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGACAAGGTGCCAATATGCTG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTG
3908563 ATTCAAGGCCAGCGATATTGGACTTA
66 ATTCAAGGCCAGCGATATTGGACTTA
* *
3908589 AAGGTGCCAATGTGCTGATTCAAGGCCATCGACATTGGTCTTAAAGACAAGGTGCCAATATGTTG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTG
3908654 ATTCAAGGCCAGCGATATTGGACTTA
66 ATTCAAGGCCAGCGATATTGGACTTA
* **
3908680 AAGGTGCCAATGTACTGATTCAAGGCCAATGACATTGGTCTTAAAGACAAGGTGCCAATATGCTG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTG
3908745 ATTCAAGGCCAGCGATATTGGACTTA
66 ATTCAAGGCCAGCGATATTGGACTTA
* *
3908771 AATGTGCCAATGTGCTGATTCAAGGCCAGC-AGCATTGGTCTTAAAGATGGCAAAGGCGCCAATA
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGA-CATTGGTCTTAAAGA---C-AAGGTGCCAATA
* * * *
3908835 TGTTGATTTAAGGCTAGCGATATTGGGCTT-
61 TGCTGATTCAAGGCCAGCGATATTGGACTTA
* *
3908865 -A--TGCTAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTG
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTG
*
3908927 ATTCAAGGCCA-CGGATATTGGGCTTAAAGA
66 ATTCAAGGCCAGC-GATATTGGACTT----A
* * * * *
3908957 TGAAGGTGCCAATATGCTAATTCAAGGCCAGCGATATTGGGCTT---------GTGCCAATGTGC
1 --AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGC
* * *
3909013 TGATTCAAGGCCAACGACATTGGTCTTA
64 TGATTCAAGGCCAGCGATATTGGACTTA
* * *
3909041 AAGACAAAGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTAAAGA
1 AAG-----GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGA
3909093 TGCCACGAAG
Statistics
Matches: 953, Mismatches: 69, Indels: 67
0.88 0.06 0.06
Matches are distributed among these distances:
82 3 0.00
84 1 0.00
86 1 0.00
87 74 0.08
88 35 0.04
89 1 0.00
90 1 0.00
91 643 0.67
92 41 0.04
93 1 0.00
94 2 0.00
95 38 0.04
97 34 0.04
98 41 0.04
99 3 0.00
101 34 0.04
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (91 bp):
AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTG
ATTCAAGGCCAGCGATATTGGACTTA
Found at i:3908249 original size:21 final size:20
Alignment explanation
Indices: 3908181--3908249 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 20
3908171 GTCTTAAAGA
3908181 CAAGGTGCCAATATGCTGATT
1 CAAGGTGCCAAT-TGCTGATT
*
3908202 CAAGGCTAGCGATATTG--GACTT
1 CAAGG-T-GCCA-ATTGCTGA-TT
*
3908224 AAAGGTGCCAATGTGCTGATT
1 CAAGGTGCCAAT-TGCTGATT
3908245 CAAGG
1 CAAGG
3908250 CCAGCGACAT
Statistics
Matches: 37, Mismatches: 4, Indels: 14
0.67 0.07 0.25
Matches are distributed among these distances:
19 2 0.05
20 5 0.14
21 14 0.38
22 9 0.24
23 5 0.14
24 2 0.05
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (20 bp):
CAAGGTGCCAATTGCTGATT
Found at i:3908431 original size:21 final size:21
Alignment explanation
Indices: 3908363--3908431 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
3908353 GTCTTAAAGA
* *
3908363 CAAGGTGCCAATATGCTGATT
1 CAAGGTGCCAATGTACTGATT
* *
3908384 CAA-G-GCCAGTGATATTGGACTT
1 CAAGGTGCCAATG-TACT-GA-TT
*
3908406 AAAGGTGCCAATGTACTGATT
1 CAAGGTGCCAATGTACTGATT
3908427 CAAGG
1 CAAGG
3908432 CCAGCGACAT
Statistics
Matches: 35, Mismatches: 8, Indels: 10
0.66 0.15 0.19
Matches are distributed among these distances:
19 5 0.14
20 3 0.09
21 11 0.31
22 6 0.17
23 4 0.11
24 6 0.17
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (21 bp):
CAAGGTGCCAATGTACTGATT
Found at i:3909019 original size:39 final size:40
Alignment explanation
Indices: 3908962--3909088 Score: 130
Period size: 48 Copynumber: 3.0 Consensus size: 40
3908952 AAAGATGAAG
*
3908962 GTGCCAATATGCTAATTCAAGGCCAGCGATATTGGGCTT-
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTA
* * * *
3909001 GTGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGACAAA
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT--------A
3909049 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTA
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTA
3909089 AAGATGCCAC
Statistics
Matches: 70, Mismatches: 9, Indels: 17
0.73 0.09 0.18
Matches are distributed among these distances:
39 34 0.49
40 1 0.01
48 35 0.50
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.26
Consensus pattern (40 bp):
GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTA
Found at i:3909086 original size:87 final size:88
Alignment explanation
Indices: 3908913--3909087 Score: 273
Period size: 87 Copynumber: 2.0 Consensus size: 88
3908903 TAAAGACAAG
* * *
3908913 GTGCCAATATGCTGATTCAAGGCCACGGATATTGGGCTTAAAGATGAAGGTGCCAATATGCTAAT
1 GTGCCAATATGCTGATTCAAGGCCACGGACATTGGGCTTAAAGATCAAAGTGCCAATATGCTAAT
3908978 TCAAGGCCAGCGATATTGGGCTT
66 TCAAGGCCAGCGATATTGGGCTT
* * *
3909001 GTGCCAATGTGCTGATTCAAGGCCAAC-GACATTGGTCTTAAAGA-CAAAGTGCCAATATGCTGA
1 GTGCCAATATGCTGATTCAAGGCC-ACGGACATTGGGCTTAAAGATCAAAGTGCCAATATGCTAA
3909064 TTCAAGGCCAGCGATATTGGGCTT
65 TTCAAGGCCAGCGATATTGGGCTT
3909088 AAAGATGCCA
Statistics
Matches: 80, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
87 40 0.50
88 38 0.47
89 2 0.03
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (88 bp):
GTGCCAATATGCTGATTCAAGGCCACGGACATTGGGCTTAAAGATCAAAGTGCCAATATGCTAAT
TCAAGGCCAGCGATATTGGGCTT
Found at i:3909157 original size:27 final size:27
Alignment explanation
Indices: 3909120--3909262 Score: 196
Period size: 27 Copynumber: 5.2 Consensus size: 27
3909110 CTGTGGGAAC
* * *
3909120 AAAGGGATGCCACGGAGGTGTGGGCTTA
1 AAAGGG-TGCCACAGAGTTGTGGACTTA
3909148 AAAGGGTGCCACAGAGTTGTGGACTTA
1 AAAGGGTGCCACAGAGTTGTGGACTTA
*
3909175 AAAGGGTGCCACAGAGTTGTGGGCTTTA
1 AAAGGGTGCCACAGAGTTGTGGAC-TTA
*
3909203 AAAGAGTGCCACAGAGTTGTGGACTTA
1 AAAGGGTGCCACAGAGTTGTGGACTTA
* *
3909230 AAAGGGTGCCATAGAGTTATGGACTTTA
1 AAAGGGTGCCACAGAGTTGTGGAC-TTA
3909258 AAAGG
1 AAAGG
3909263 AACAAGGTGC
Statistics
Matches: 104, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
27 65 0.62
28 39 0.38
ACGTcount: A:0.30, C:0.13, G:0.34, T:0.22
Consensus pattern (27 bp):
AAAGGGTGCCACAGAGTTGTGGACTTA
Found at i:3909212 original size:55 final size:55
Alignment explanation
Indices: 3909120--3909261 Score: 214
Period size: 55 Copynumber: 2.6 Consensus size: 55
3909110 CTGTGGGAAC
* * *
3909120 AAAGGGATGCCACGGAGGTGTGGGC-TTAAAAGGGTGCCACAGAGTTGTGGACTTA
1 AAAGGG-TGCCACAGAGTTGTGGGCTTTAAAAGAGTGCCACAGAGTTGTGGACTTA
3909175 AAAGGGTGCCACAGAGTTGTGGGCTTTAAAAGAGTGCCACAGAGTTGTGGACTTA
1 AAAGGGTGCCACAGAGTTGTGGGCTTTAAAAGAGTGCCACAGAGTTGTGGACTTA
* * *
3909230 AAAGGGTGCCATAGAGTTATGGACTTTAAAAG
1 AAAGGGTGCCACAGAGTTGTGGGCTTTAAAAG
3909262 GAACAAGGTG
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
54 16 0.20
55 64 0.80
ACGTcount: A:0.30, C:0.13, G:0.34, T:0.23
Consensus pattern (55 bp):
AAAGGGTGCCACAGAGTTGTGGGCTTTAAAAGAGTGCCACAGAGTTGTGGACTTA
Found at i:3909310 original size:34 final size:34
Alignment explanation
Indices: 3909249--3909336 Score: 95
Period size: 34 Copynumber: 2.6 Consensus size: 34
3909239 CATAGAGTTA
* * * * * *
3909249 TGGACTTTAAAAGGAACAAGGTGCCACGGACTTG
1 TGGACTTTAAAAAGAAAAAGATACCACGGAATGG
3909283 TGGACTTTAAAAAGAAAAAGATACCACGGAATGG
1 TGGACTTTAAAAAGAAAAAGATACCACGGAATGG
* **
3909317 TGGGCTTTGTAAAGAAAAAG
1 TGGACTTTAAAAAGAAAAAG
3909337 GTGCCAAGTT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
34 45 1.00
ACGTcount: A:0.40, C:0.12, G:0.27, T:0.20
Consensus pattern (34 bp):
TGGACTTTAAAAAGAAAAAGATACCACGGAATGG
Found at i:3909516 original size:31 final size:31
Alignment explanation
Indices: 3909342--3909516 Score: 140
Period size: 31 Copynumber: 5.6 Consensus size: 31
3909332 AAAAGGTGCC
* * *
3909342 AAGTTGTGGGCTTTGAAGAAAAG-ATGCCACT
1 AAGTCGTGGACTTT-AAGAAGAGAATGCCACT
* * *
3909373 GAGTCGTGGACTTTAAAAAGAGATTGCCACT
1 AAGTCGTGGACTTTAAGAAGAGAATGCCACT
* * * * *
3909404 GAGTTGTGGACTTTGGAGAAAAAAATGCCACT
1 AAGTCGTGGACTTT-AAGAAGAGAATGCCACT
* **
3909436 GAGTCGTGGACTTTGGGACA-A-AATGCCACT
1 AAGTCGTGGACTTTAAGA-AGAGAATGCCACT
* * * *
3909466 AAGTCATGGGCTTTGAGAAGAGATTGCCACT
1 AAGTCGTGGACTTTAAGAAGAGAATGCCACT
3909497 AAGTCGTGGACTTTAAGAAG
1 AAGTCGTGGACTTTAAGAAG
3909517 GTATTTGAAG
Statistics
Matches: 117, Mismatches: 22, Indels: 10
0.79 0.15 0.07
Matches are distributed among these distances:
29 1 0.01
30 30 0.26
31 60 0.51
32 26 0.22
ACGTcount: A:0.31, C:0.15, G:0.29, T:0.25
Consensus pattern (31 bp):
AAGTCGTGGACTTTAAGAAGAGAATGCCACT
Found at i:3918376 original size:21 final size:20
Alignment explanation
Indices: 3918348--3918393 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
3918338 AAGGTGCTGG
*
3918348 ACATGCTCTAAATGCATGAA
1 ACATGCTCAAAATGCATGAA
*
3918368 ACATAGCTCAAAATGTATGAA
1 ACAT-GCTCAAAATGCATGAA
*
3918389 TCATG
1 ACATG
3918394 GGTTGTTAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 5 0.23
21 17 0.77
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.26
Consensus pattern (20 bp):
ACATGCTCAAAATGCATGAA
Found at i:3919318 original size:13 final size:13
Alignment explanation
Indices: 3919300--3919325 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3919290 CAGGGTAGCT
3919300 TTGTATCGATACA
1 TTGTATCGATACA
3919313 TTGTATCGATACA
1 TTGTATCGATACA
3919326 ACACTTATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:3925202 original size:13 final size:13
Alignment explanation
Indices: 3925184--3925210 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
3925174 ATGCATGGGG
3925184 CATTGTATCGATA
1 CATTGTATCGATA
3925197 CATTGTATCGATA
1 CATTGTATCGATA
3925210 C
1 C
3925211 GTGGTAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.37
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:3926701 original size:26 final size:25
Alignment explanation
Indices: 3926661--3926718 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 25
3926651 TTGAAAAATT
* *
3926661 AAAACTTTGTGAAAA-TTGAAATGTGG
1 AAAAATTTGGGAAAAGTT-AAAT-TGG
*
3926687 GAAAATTTGGGAAAAGTTAAATTGG
1 AAAAATTTGGGAAAAGTTAAATTGG
3926712 AAAAATT
1 AAAAATT
3926719 ATGACATGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
25 9 0.33
26 16 0.59
27 2 0.07
ACGTcount: A:0.47, C:0.02, G:0.22, T:0.29
Consensus pattern (25 bp):
AAAAATTTGGGAAAAGTTAAATTGG
Found at i:3927768 original size:21 final size:22
Alignment explanation
Indices: 3927731--3927806 Score: 73
Period size: 21 Copynumber: 3.5 Consensus size: 22
3927721 CAGAACTTTC
**
3927731 AACAAAAAAATTCCAAAAAAAA
1 AACAAAAAAATAGCAAAAAAAA
* *
3927753 AAGAAAAAAA-GGCAAAAAAAA
1 AACAAAAAAATAGCAAAAAAAA
* *
3927774 ATCAAAAAAATAGAAAATAAAAA
1 AACAAAAAAATAGCAAA-AAAAA
*
3927797 AATAAAAAAA
1 AACAAAAAAA
3927807 AGAGCTTTTT
Statistics
Matches: 43, Mismatches: 9, Indels: 3
0.78 0.16 0.05
Matches are distributed among these distances:
21 17 0.40
22 13 0.30
23 13 0.30
ACGTcount: A:0.80, C:0.07, G:0.05, T:0.08
Consensus pattern (22 bp):
AACAAAAAAATAGCAAAAAAAA
Found at i:3927797 original size:15 final size:15
Alignment explanation
Indices: 3927766--3927804 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
3927756 AAAAAAAGGC
3927766 AAAA-AAAAATCAAA
1 AAAATAAAAATCAAA
3927780 AAAATAGAAAAT-AAA
1 AAAATA-AAAATCAAA
3927795 AAAATAAAAA
1 AAAATAAAAA
3927805 AAAGAGCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 8 0.35
15 10 0.43
16 5 0.22
ACGTcount: A:0.85, C:0.03, G:0.03, T:0.10
Consensus pattern (15 bp):
AAAATAAAAATCAAA
Found at i:3928197 original size:16 final size:16
Alignment explanation
Indices: 3928172--3928232 Score: 70
Period size: 16 Copynumber: 3.8 Consensus size: 16
3928162 ATTTCGGGTT
*
3928172 ATTTTCGGTTCAGGTC
1 ATTTTGGGTTCAGGTC
* *
3928188 GTTTTGGGTTCGGGTC
1 ATTTTGGGTTCAGGTC
*
3928204 ATTTCGGGTTC-GGATC
1 ATTTTGGGTTCAGG-TC
3928220 ATTTTGGGTTCAG
1 ATTTTGGGTTCAG
3928233 ATTGTTTCGG
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
15 2 0.05
16 34 0.92
17 1 0.03
ACGTcount: A:0.10, C:0.15, G:0.33, T:0.43
Consensus pattern (16 bp):
ATTTTGGGTTCAGGTC
Found at i:3928200 original size:32 final size:32
Alignment explanation
Indices: 3928164--3928268 Score: 90
Period size: 32 Copynumber: 3.3 Consensus size: 32
3928154 TTTTAAAAAT
* *
3928164 TTCGGGTTATTTTC-GGTTCAGG-TCGTTTTGGG
1 TTCGGGTCA-TTTCGGGTTC-GGATCATTTTGGG
3928196 TTCGGGTCATTTCGGGTTCGGATCATTTTGGG
1 TTCGGGTCATTTCGGGTTCGGATCATTTTGGG
* * ** * *
3928228 TTCAGATTGTTTCGGGTTTC-GATCATTTCGGA
1 TTCGGGTCATTTCGGG-TTCGGATCATTTTGGG
3928260 TTCGGGTCA
1 TTCGGGTCA
3928269 ATCAGGTTTG
Statistics
Matches: 58, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
31 6 0.10
32 49 0.84
33 3 0.05
ACGTcount: A:0.10, C:0.15, G:0.31, T:0.43
Consensus pattern (32 bp):
TTCGGGTCATTTCGGGTTCGGATCATTTTGGG
Found at i:3928244 original size:16 final size:16
Alignment explanation
Indices: 3928174--3928258 Score: 66
Period size: 16 Copynumber: 5.4 Consensus size: 16
3928164 TTCGGGTTAT
* *
3928174 TTTC-GGTTCAGGTCG
1 TTTCGGGTTCAGATCA
* * *
3928189 TTTTGGGTTCGGGTCA
1 TTTCGGGTTCAGATCA
*
3928205 TTTCGGGTTCGGATCA
1 TTTCGGGTTCAGATCA
* **
3928221 TTTTGGGTTCAGATTG
1 TTTCGGGTTCAGATCA
3928237 TTTCGGGTTTC-GATCA
1 TTTCGGG-TTCAGATCA
3928253 TTTCGG
1 TTTCGG
3928259 ATTCGGGTCA
Statistics
Matches: 56, Mismatches: 12, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
15 3 0.05
16 50 0.89
17 3 0.05
ACGTcount: A:0.09, C:0.15, G:0.32, T:0.44
Consensus pattern (16 bp):
TTTCGGGTTCAGATCA
Found at i:3928245 original size:48 final size:48
Alignment explanation
Indices: 3928172--3928264 Score: 116
Period size: 48 Copynumber: 1.9 Consensus size: 48
3928162 ATTTCGGGTT
* * * *
3928172 ATTTTCGGTTCAGGTCGTTTTGGG-TTCGGGTCATTTCGGGTTCGGATC
1 ATTTTCGGTTCAGATCGTTTCGGGTTTC-GATCATTTCGGATTCGGATC
* *
3928220 ATTTTGGGTTCAGATTGTTTCGGGTTTCGATCATTTCGGATTCGG
1 ATTTTCGGTTCAGATCGTTTCGGGTTTCGATCATTTCGGATTCGG
3928265 GTCAATCAGG
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
48 35 0.92
49 3 0.08
ACGTcount: A:0.11, C:0.15, G:0.31, T:0.43
Consensus pattern (48 bp):
ATTTTCGGTTCAGATCGTTTCGGGTTTCGATCATTTCGGATTCGGATC
Found at i:3929722 original size:13 final size:13
Alignment explanation
Indices: 3929704--3929729 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3929694 CTATTTATGA
3929704 TGTATCGATACAC
1 TGTATCGATACAC
3929717 TGTATCGATACAC
1 TGTATCGATACAC
3929730 ACAAATATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:3929856 original size:22 final size:22
Alignment explanation
Indices: 3929801--3929856 Score: 105
Period size: 21 Copynumber: 2.6 Consensus size: 22
3929791 GATGAACAGT
3929801 ATGAACAGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
3929823 ATGAA-AGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
3929844 ATGAACAGTGATG
1 ATGAACAGTGATG
3929857 AATAGTGATG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 21 0.64
22 12 0.36
ACGTcount: A:0.38, C:0.11, G:0.25, T:0.27
Consensus pattern (22 bp):
ATGAACAGTGATGTATCGATAC
Found at i:3929863 original size:10 final size:10
Alignment explanation
Indices: 3929844--3929874 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
3929834 GTATCGATAC
3929844 ATGAACAGTG
1 ATGAACAGTG
*
3929854 ATGAATAGTG
1 ATGAACAGTG
3929864 ATGAACAGTG
1 ATGAACAGTG
3929874 A
1 A
3929875 AAATGAGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.42, C:0.06, G:0.29, T:0.23
Consensus pattern (10 bp):
ATGAACAGTG
Found at i:3929962 original size:53 final size:53
Alignment explanation
Indices: 3929898--3930034 Score: 247
Period size: 53 Copynumber: 2.6 Consensus size: 53
3929888 CTACTTCCAA
3929898 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
* *
3929951 TGTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTGCCAATGTCC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
3930004 TGTATCGATACATATTTATGTGTATCGATAC
1 TGTATCGATACATATTT-TGTGTATCGATAC
3930035 TATGCAATTT
Statistics
Matches: 80, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
53 67 0.84
54 13 0.16
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.37
Consensus pattern (53 bp):
TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
Found at i:3930029 original size:20 final size:20
Alignment explanation
Indices: 3930004--3930074 Score: 83
Period size: 20 Copynumber: 3.5 Consensus size: 20
3929994 GCCAATGTCC
*
3930004 TGTATCGATACATATTTATG
1 TGTATCGATACATATTAATG
* *
3930024 TGTATCGATAC-TATGCAATT
1 TGTATCGATACATAT-TAATG
3930044 TGTATCGATACAT-TTAAATG
1 TGTATCGATACATATT-AATG
3930064 TGTATCGATAC
1 TGTATCGATAC
3930075 TTTTCAGGGT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
19 3 0.07
20 39 0.91
21 1 0.02
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.41
Consensus pattern (20 bp):
TGTATCGATACATATTAATG
Found at i:3931535 original size:19 final size:20
Alignment explanation
Indices: 3931511--3931563 Score: 72
Period size: 19 Copynumber: 2.7 Consensus size: 20
3931501 ACATTATGTT
* *
3931511 TTGTATCGATACGTGCTC-A
1 TTGTATCGATACATACTCAA
*
3931530 TTGTATCGATATATACTCAA
1 TTGTATCGATACATACTCAA
3931550 TTGTATCGATACAT
1 TTGTATCGATACAT
3931564 GAAACTAGCA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 15 0.52
20 14 0.48
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (20 bp):
TTGTATCGATACATACTCAA
Found at i:3931650 original size:33 final size:32
Alignment explanation
Indices: 3931593--3931658 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 32
3931583 CTAAGTGAAA
*
3931593 TGTATCAATACATGGGATAATGTATCGATACAT
1 TGTATCAATACATGGGAT-ATGTATCAATACAT
3931626 TGTATCAATACATGAAGGAT-TGTATCAATACAT
1 TGTATCAATACATG--GGATATGTATCAATACAT
3931659 CATGCCCAAC
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
33 26 0.87
35 4 0.13
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (32 bp):
TGTATCAATACATGGGATATGTATCAATACAT
Done.