genome.fa.s2477.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2477
Parameters: 2 7 7 80 10 50 1000
Length:  49748

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1603--1641	13	3.0	13	96	0	69	30	17	15	35	1.91
3790--3815	13	2.0	13	100	0	52	38	15	15	30	1.88
3772--3833	32	1.9	33	90	3	99	41	14	14	29	1.85
4589--4794	28	7.3	28	92	1	349	21	16	32	28	1.96
4596--4794	85	2.4	84	96	0	362	20	17	32	29	1.96
5965--6025	1	61.0	1	80	0	68	0	3	6	90	0.55
16849--16915	37	1.9	35	88	11	102	29	25	11	32	1.92
17374--17399	13	2.0	13	100	0	52	30	15	15	38	1.88
17354--17417	32	2.0	33	90	3	103	28	14	15	42	1.86
19291--19315	13	1.9	13	100	0	50	32	16	16	36	1.90
23038--23063	13	2.0	13	100	0	52	30	15	15	38	1.88
23018--23081	32	2.0	33	90	3	103	28	14	15	42	1.86
26856--26948	20	4.7	20	89	5	143	39	11	17	31	1.85
28761--28813	19	2.7	20	82	2	63	39	20	11	28	1.87
28720--29001	135	2.1	135	95	0	510	35	15	18	31	1.92
28900--28946	19	2.4	20	85	3	60	38	17	12	31	1.87
29089--29141	22	2.5	22	81	9	56	43	9	7	39	1.65
37565--37739	32	5.5	33	68	21	95	36	14	15	33	1.88
37654--37738	13	6.5	13	68	26	56	36	15	14	34	1.87
37662--37757	19	5.8	16	70	29	60	36	15	13	34	1.87
37654--37757	32	3.2	31	89	8	163	36	16	13	33	1.88
41268--41321	20	2.7	19	86	11	65	35	16	14	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41350--41405	19	2.9	19	89	2	76	35	14	16	33	1.88
41797--41839	7	6.4	7	86	7	54	55	23	2	18	1.54
41790--41839	13	3.8	13	84	5	64	56	22	4	18	1.58
41804--41850	20	2.3	20	82	7	60	53	21	6	19	1.67
41797--41864	33	2.0	34	83	8	86	52	19	7	20	1.69
43625--43659	18	2.1	16	89	10	52	17	2	8	71	1.23
45171--45217	20	2.4	19	79	13	51	63	0	2	34	1.06
47741--47797	30	1.9	30	92	0	96	57	0	1	40	1.09
47811--47874	25	2.6	24	80	9	67	50	3	3	43	1.33
48569--48599	16	1.9	16	93	0	53	58	16	3	22	1.52
48826--48870	24	1.9	23	82	13	56	46	6	0	46	1.29
49273--49315	21	2.0	22	82	13	54	65	2	2	30	1.18

Tables:   1

The End!