genome.fa.s2478.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2478
Parameters: 2 7 7 80 10 50 1000
Length:  72442

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1002--1142	35	3.9	37	76	15	129	36	14	17	31	1.90
4985--5027	20	2.1	20	87	12	61	23	13	6	55	1.62
5936--6009	20	3.7	20	81	3	103	35	13	20	31	1.91
5954--6029	21	3.7	21	82	3	109	40	11	18	28	1.86
5936--6029	41	2.3	41	100	0	188	38	12	19	29	1.89
6068--6093	13	2.0	13	100	0	52	38	15	15	30	1.88
8300--8344	21	2.1	21	84	8	56	53	4	20	22	1.63
10148--10178	15	2.1	15	93	0	53	48	16	22	12	1.80
12194--12271	20	3.6	21	74	15	70	26	14	15	43	1.85
12260--12297	13	2.9	13	96	0	67	34	18	15	31	1.92
14755--14828	20	3.7	20	81	3	103	35	13	20	31	1.91
14773--14848	21	3.7	21	82	3	109	40	11	18	28	1.86
14755--14848	41	2.3	41	100	0	188	38	12	19	29	1.89
14887--14912	13	2.0	13	100	0	52	38	15	15	30	1.88
17261--17324	33	1.9	33	84	6	85	35	17	14	32	1.89
17357--17411	19	2.8	20	80	5	67	40	16	12	30	1.86
23593--23623	16	1.9	16	100	0	62	41	12	12	32	1.81
25213--25261	23	2.1	23	88	0	71	34	0	6	59	1.22
25415--25442	7	4.0	7	100	0	56	42	0	0	57	0.99
25556--25592	16	2.3	16	95	0	65	2	8	0	89	0.58
26363--27163	402	2.0	393	85	6	1062	43	6	8	41	1.61
28220--28244	1	25.0	1	100	0	50	100	0	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30308--30428	20	5.6	20	68	18	80	29	18	12	39	1.87
30358--30434	20	3.8	20	79	6	93	29	16	12	40	1.86
30308--30485	91	2.0	90	89	1	275	28	17	11	41	1.85
36450--36502	20	2.8	18	83	10	79	47	7	5	39	1.56
37040--37074	18	1.9	18	88	0	52	17	0	11	71	1.14
40560--40612	26	2.1	25	82	10	63	24	1	0	73	0.93
44546--44631	24	3.6	24	72	17	79	46	1	0	52	1.08
44585--44627	19	2.4	18	88	7	61	37	0	0	62	0.95
45018--45042	13	1.9	13	100	0	50	64	4	0	32	1.12
45069--45280	70	3.0	70	97	0	397	37	14	7	41	1.73
45409--45446	12	3.1	12	82	17	51	73	2	0	23	0.95
48848--48872	13	1.9	13	100	0	50	92	8	0	0	0.40
49676--49772	49	2.0	49	95	0	176	27	8	25	38	1.84
51250--51357	35	3.1	35	66	10	103	36	13	6	43	1.70
51216--51357	70	2.0	70	100	0	284	35	14	7	43	1.72
52895--53147	78	3.3	77	76	8	244	32	11	16	39	1.85
52879--53209	78	4.3	78	74	10	238	31	11	16	40	1.85
54806--54847	20	2.1	20	90	0	66	45	7	16	30	1.74
54833--54860	14	2.0	14	100	0	56	35	14	14	35	1.86
56743--56780	20	1.9	20	94	0	67	36	7	13	42	1.73
57972--58017	3	15.7	3	95	4	85	30	0	0	69	0.89
58398--58457	29	2.1	28	81	12	68	35	8	16	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58444--58473	14	2.1	15	93	6	53	36	6	20	36	1.79
60497--60571	20	3.8	20	87	0	114	32	14	13	40	1.85
62989--63055	19	3.5	19	97	0	125	31	10	19	38	1.85
63082--63123	21	2.0	21	100	0	84	42	9	19	28	1.82
63110--63135	13	2.0	13	100	0	52	30	15	15	38	1.88
65479--65708	103	2.2	101	82	6	284	30	23	11	33	1.90
65475--65712	51	4.6	51	82	7	284	30	24	11	33	1.91
65644--65827	79	2.3	79	91	1	298	27	24	15	32	1.95
67965--68009	22	2.1	21	83	4	54	26	0	8	64	1.23
68010--68057	19	2.5	19	75	0	60	37	0	8	54	1.31
68474--68499	13	2.0	13	100	0	52	38	15	15	30	1.88
70715--70759	21	2.1	21	84	8	56	53	4	20	22	1.63

Tables:   1

The End!