Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2483
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5661
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.30
Found at i:1611 original size:475 final size:474
Alignment explanation
Indices: 1--5661 Score: 10458
Period size: 474 Copynumber: 11.9 Consensus size: 474
1 TTCATGTTTGTCTTATTTAAAAGACAATTTTTGATTCTATC-ATAATGGTGGAAA-ACAAAGCTT
1 TTCATGTTTGTCTTATTTAAAAGACAA-TTTTGATTCTATCAATAATGGTGGAAAGAC-AAGCTT
* * *
64 -TCTTGAGACACTAAAGCATCAATGTCATGTATCCTAATGAAAAGAA-GTTGTTTTTGGTTCCTA
64 CTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATG-TGTTTTTGGTTCCTA
* *
127 ATCTTG-AAAGAA--GAGACTG-TACGA-AATCAATACATGTCTC-TTTAAAAGTGGAAACTTTG
128 ATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCATGTCTCATTT-AAAGTGCAAACTTTG
186 ATTTTATGGAAAAATAAAGGCAAAGAAAAGATTTCGATGCAAAAGAAAAACCATCAATATCTTGC
192 ATTTTATGG-AAAAT-AAGGCAAAGAAAAGATTTCGATGCAAAAG-AAAACCATCAATATCTTGC
251 ATCCTGAGGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAGTGAAGATCCATACTAGAAT
254 ATCCTGAGGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAGTGAAGATCCATACTAGAAT
316 CC-TGTTTTGTCCTCATTTGAGGCGCGGACTTAGATTTTACACAAATTGGTGGGAAAAAGCGTAT
319 CCATG-TTTGT-CTCATTTGAGGCGCGGACTTAGATTTTACACAAATTGGTGGGAAAAAGCGTAT
380 CTTGCGAAACCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCCAAATC
382 CTTGCGAAACCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCCAAATC
445 CAGAAAAGAATGGGGATTAGTAAGAGTA
447 CAGAAAAGAATGGGGATTAGTAAGAGTA
473 TTCATGTTTGTCTTATTTAAAAGACAATTTTGATTCTATCAATAATGGTGGAAAGACAAGCTTCT
1 TTCATGTTTGTCTTATTTAAAAGACAATTTTGATTCTATCAATAATGGTGGAAAGACAAGCTTCT
538 CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATC
66 CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATC
*
603 TTGAAAAAAATGGAGACTGTTACGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTT
131 TTGAAAAGAATGGAGACTGTTACGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTT
*
668 TATGAAAAATAAGGCAAAGAAAAGATTTCGATGCAAAAGAAAACCATCAATATCTTGCATCCTGA
196 TATGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAAAGAAAACCATCAATATCTTGCATCCTGA
733 GGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAGTGAAGATCCATACTAGAATCCATGTT
261 GGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAGTGAAGATCCATACTAGAATCCATGTT
798 TGTCTCATTTGAGGCGCGGACTTAGATTTTACACAAATTGGTGGGAAAAAGCGTATCTTGCGAAA
326 TGTCTCATTTGAGGCGCGGACTTAGATTTTACACAAATTGGTGGGAAAAAGCGTATCTTGCGAAA
863 CCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCCAAATCCAGAAAAGA
391 CCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCCAAATCCAGAAAAGA
928 ATGGGGATTAGTAAGAGTA
456 ATGGGGATTAGTAAGAGTA
947 TTCATGTTTGTCTTATTTAAAAGACAATTTTGATTCTATCAATAATGGTGGAAAGACAAGCTTCT
1 TTCATGTTTGTCTTATTTAAAAGACAATTTTGATTCTATCAATAATGGTGGAAAGACAAGCTTCT
*
1012 CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTCCTAATC
66 CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATC
* * *
1077 TTGAAAAAAATGGAGACTGTTACGAGAATCAATACATGTCTCTTTTAAAGTGCAAACTTTGATTT
131 TTGAAAAGAATGGAGACTGTTACGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTT
*
1142 TATGAAAAATAAGGCAAAGAAAAGATTTCGATGCAAAAGAAAACCATCAATATCTTGCATCCTGA
196 TATGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAAAGAAAACCATCAATATCTTGCATCCTGA
*
1207 GGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCATACTAGAATCCATGTT
261 GGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAGTGAAGATCCATACTAGAATCCATGTT
1272 TGTCTCATTTGAGGCGCGGACTTAGATTTTACACAAATTGGTGGGAAAAAGCGTATCTTGCGAAA
326 TGTCTCATTTGAGGCGCGGACTTAGATTTTACACAAATTGGTGGGAAAAAGCGTATCTTGCGAAA
* *
1337 CCAAAGCATCAATATCATGTATCCAGTATAAGAAGACTATGTTTATGGTGCCAAATACAGAAAAC
391 CCAAAGCATCAATATCATGTATCCA-TATAAGAAGACTATGTTTATGGTGCCAAATCCAGAAAAG
1402 AATGGGGATTAGTAAGAGTA
455 AATGGGGATTAGTAAGAGTA
1422 TTCATGTTTGTCTTATTTAAAAGACAATTTTGATTCTATCAATAATGGTGGAAAGACAAGCTTCT
1 TTCATGTTTGTCTTATTTAAAAGACAATTTTGATTCTATCAATAATGGTGGAAAGACAAGCTTCT
1487 CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATC
66 CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATC
* *
1552 TTGAAAAGAATGGAGACTGTTACAAGAATCAATGCATGTCTCACTTAAAGTGCAAACTTTGATTT
131 TTGAAAAGAATGGAGACTGTTACGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTT
1617 TATGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAAAGAAAACCATCAATATCTTGCATCCTGA
196 TATGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAAAGAAAACCATCAATATCTTGCATCCTGA
1682 GGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAAGTGAAGATCCATACTAGAATCCATGT
261 GGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATG-AGTGAAGATCCATACTAGAATCCATGT
1747 TTGTCTCATTTGAGGCGCGGACTTAGATTTTACACAAATTGGTGGGAAAAAGCGTATCTTGCGAA
325 TTGTCTCATTTGAGGCGCGGACTTAGATTTTACACAAATTGGTGGGAAAAAGCGTATCTTGCGAA
1812 ACCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCCAAATCCAGAAAAG
390 ACCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCCAAATCCAGAAAAG
1877 AATGGGGATTAGTAAGAGTA
455 AATGGGGATTAGTAAGAGTA
1897 TTCATGTTTGTCTTATTTAAAAGACAATTTTGATTCTATCAATAATGGTGGAAAGACAAGCTTCT
1 TTCATGTTTGTCTTATTTAAAAGACAATTTTGATTCTATCAATAATGGTGGAAAGACAAGCTTCT
*
1962 CTTGCGACACTAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATC
66 CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATC
2027 TTGAAAAGAATGGAGACTGTTACGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTT
131 TTGAAAAGAATGGAGACTGTTACGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTT
2092 TATGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAAAGAAAACCATCAATATCTTGCATCCTGA
196 TATGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAAAGAAAACCATCAATATCTTGCATCCTGA
2157 GGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAGTGAAGATCCATACTAGAATCCATGTT
261 GGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAGTGAAGATCCATACTAGAATCCATGTT
2222 TGTCTCATTTGAGGCGCGGACTTAGATTTTACACAAATTGGTGGGAAAAAGCGTATCTTGCGAAA
326 TGTCTCATTTGAGGCGCGGACTTAGATTTTACACAAATTGGTGGGAAAAAGCGTATCTTGCGAAA
2287 CCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCCAAATCCAGAAAAGA
391 CCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCCAAATCCAGAAAAGA
2352 ATGGGGATTAGTAAGAGTA
456 ATGGGGATTAGTAAGAGTA
2371 TTCATGTTTGTCTTATTTAAAAGACAATTTTGATTCTATCAATAATGGTGGAAAGACAAGCTTCT
1 TTCATGTTTGTCTTATTTAAAAGACAATTTTGATTCTATCAATAATGGTGGAAAGACAAGCTTCT
2436 CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATC
66 CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATC
*
2501 TTGAAAAAAATGGAGACTGTTACGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTT
131 TTGAAAAGAATGGAGACTGTTACGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTT
*
2566 TATGGAAAATAAGGCAAAGAAAAGATTTCAATGCAAAAGAAAACCATCAATATCTTGCATCCTGA
196 TATGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAAAGAAAACCATCAATATCTTGCATCCTGA
*
2631 GGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCATACTAGAATCCATGTT
261 GGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAGTGAAGATCCATACTAGAATCCATGTT
* *
2696 TGTCTCATTTGAGGCACGGACTTAGATTTTACACAAATTGGTGGGACGAAAGCGTATCTTGCGAA
326 TGTCTCATTTGAGGCGCGGACTTAGATTTTACACAAATTGGTGGGA-AAAAGCGTATCTTGCGAA
*
2761 ACCAAAGCATCAATATCATGTATCCGTATAAGAAGACTATGTTTATGGTGCCAAATCCAGAAAAG
390 ACCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCCAAATCCAGAAAAG
2826 AATGGGGATTAGTAAGAGTA
455 AATGGGGATTAGTAAGAGTA
2846 TTCATGTTTGTCTTATTTAAAAGACAA-TTTGATTCTATCAATAATGGTGGAAAGACAAGCTTCT
1 TTCATGTTTGTCTTATTTAAAAGACAATTTTGATTCTATCAATAATGGTGGAAAGACAAGCTTCT
2910 CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATC
66 CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATC
* *
2975 TTGAAAAGAATGGAGACTGTTACAAGAATCAATGCATATCTCATTTAAAGTGCAAACTTTGATTT
131 TTGAAAAGAATGGAGACTGTTACGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTT
*
3040 TATGGAAAATAAGGCAAAGAAAAGATTTCAATGCAAAAGAAAACCATCAATATCTTGCATCCTGA
196 TATGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAAAGAAAACCATCAATATCTTGCATCCTGA
3105 GGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAGTGAAGATCCATACTAGAATCCATGTT
261 GGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAGTGAAGATCCATACTAGAATCCATGTT
3170 TGTCTCATTTGAGGCGCGGACTTAGATTTTACACAAATTGGTGGGAAAAAGCGTATCTTGCGAAA
326 TGTCTCATTTGAGGCGCGGACTTAGATTTTACACAAATTGGTGGGAAAAAGCGTATCTTGCGAAA
3235 CCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCCAAATCCAGAAAAGA
391 CCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCCAAATCCAGAAAAGA
3300 ATGGGGATTAGTAAGAGTA
456 ATGGGGATTAGTAAGAGTA
3319 TTCATGTTTGTCTTATTTAAAAGACAATTTTGATTCTATCAATAATGGTGGAAAGACAAGCTTCT
1 TTCATGTTTGTCTTATTTAAAAGACAATTTTGATTCTATCAATAATGGTGGAAAGACAAGCTTCT
*
3384 CTTGCGACACTAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATC
66 CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATC
3449 TTGAAAAGAATGGAGACTGTTACGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTT
131 TTGAAAAGAATGGAGACTGTTACGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTT
3514 TATGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAAAGAAAACCATCAATATCTTGCATCCTGA
196 TATGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAAAGAAAACCATCAATATCTTGCATCCTGA
3579 GGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAGTGAAGATCCATACTAGAATCCATGTT
261 GGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAGTGAAGATCCATACTAGAATCCATGTT
3644 TGTCTCATTTGAGGCGCGGACTTAGATTTTACACAAATTGGTGGGAAAAAGCGTATCTTGCGAAA
326 TGTCTCATTTGAGGCGCGGACTTAGATTTTACACAAATTGGTGGGAAAAAGCGTATCTTGCGAAA
3709 CCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCCAAATCCAGAAAAGA
391 CCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCCAAATCCAGAAAAGA
3774 ATGGGGATTAGTAAGAGTA
456 ATGGGGATTAGTAAGAGTA
3793 TTCATGTTTGTCTTATTTAAAAGACAATTTTGATTCTATCAATAATGGTGGAAAGACAAGCTTCT
1 TTCATGTTTGTCTTATTTAAAAGACAATTTTGATTCTATCAATAATGGTGGAAAGACAAGCTTCT
*
3858 CTTGCGACACTAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATC
66 CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATC
3923 TTGAAAAGAATGGAGACTGTTACGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTT
131 TTGAAAAGAATGGAGACTGTTACGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTT
3988 TATGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAAAGAAAACCATCAATATCTTGCATCCTGA
196 TATGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAAAGAAAACCATCAATATCTTGCATCCTGA
4053 GGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAGTGAAGATCCATACTAGAATCCATGTT
261 GGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAGTGAAGATCCATACTAGAATCCATGTT
4118 TGTCTCATTTGAGGCGCGGACTTAGATTTTACACAAATTGGTGGGAAAAAGCGTATCTTGCGAAA
326 TGTCTCATTTGAGGCGCGGACTTAGATTTTACACAAATTGGTGGGAAAAAGCGTATCTTGCGAAA
4183 CCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCCAAATCCAGAAAAGA
391 CCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCCAAATCCAGAAAAGA
4248 ATGGGGATTAGTAAGAGTA
456 ATGGGGATTAGTAAGAGTA
4267 TTCATGTTTGTCTTATTTAAAAGACAATTTTGATTCTATCAATAATGGTGGAAAGACAAGCTTCT
1 TTCATGTTTGTCTTATTTAAAAGACAATTTTGATTCTATCAATAATGGTGGAAAGACAAGCTTCT
*
4332 CTTGCGACACTAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATC
66 CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATC
4397 TTGAAAAGAATGGAGACTGTTACGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTT
131 TTGAAAAGAATGGAGACTGTTACGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTT
4462 TAT-GAAAATAAGGCAAAGAAAAGATTTCGATGCAAAAGAAAACCATCAATATCTTGCATCCTGA
196 TATGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAAAGAAAACCATCAATATCTTGCATCCTGA
4526 GGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAGTGAAGATCCATACTAGAATCCATGTT
261 GGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAGTGAAGATCCATACTAGAATCCATGTT
4591 TGTCTCATTTGAGGCGCGGACTTAGATTTTACACAAATTGGTGGGAAAAAGCGTATCTTGCGAAA
326 TGTCTCATTTGAGGCGCGGACTTAGATTTTACACAAATTGGTGGGAAAAAGCGTATCTTGCGAAA
4656 CCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCCAAATCCAGAAAAGA
391 CCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCCAAATCCAGAAAAGA
4721 ATGGGGATTAGTAAGAGTA
456 ATGGGGATTAGTAAGAGTA
4740 TTCATGTTTGTCTTATTTAAAAGACAATTTTGATTCTATCAATAATGGTGGAAAGACAAGCTTCT
1 TTCATGTTTGTCTTATTTAAAAGACAATTTTGATTCTATCAATAATGGTGGAAAGACAAGCTTCT
4805 CTTGCGACACCTAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAAT
66 CTTGCGACACC-AAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAAT
4870 CTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATT
130 CTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATT
4935 TTATGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAAAGAAAACCATCAATATCTTGCATCCTG
195 TTATGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAAAGAAAACCATCAATATCTTGCATCCTG
5000 AGGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAGTGAAGATCCATACTAGAATCCATGT
260 AGGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAGTGAAGATCCATACTAGAATCCATGT
5065 TTGTCTCATTTGAGGCGCGGACTTAGATTTTACACAAATTGGTGGGAAAAAGCGTATCTTGCGAA
325 TTGTCTCATTTGAGGCGCGGACTTAGATTTTACACAAATTGGTGGGAAAAAGCGTATCTTGCGAA
5130 ACCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCCAAATCCAGAAAAG
390 ACCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCCAAATCCAGAAAAG
*
5195 AATGGGGATTAGTAAGATTA
455 AATGGGGATTAGTAAGAGTA
5215 TTCATGTTTGTCTTATTTAAAAGACAATTTTGATTCTATCAATAATGGTGGAAAGACAAGCTTCT
1 TTCATGTTTGTCTTATTTAAAAGACAATTTTGATTCTATCAATAATGGTGGAAAGACAAGCTTCT
*
5280 CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAA-GTGTTTTTGGCTCCTAATC
66 CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATC
* * *
5344 TTGAAAA-AATGGAGACTGTTACGAGACATCAATACATGTCTCTTTTCAAGTGCAAACTTTGATT
131 TTGAAAAGAATGGAGACTGTTACGAGA-ATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATT
* *
5408 TTATGAAAAATAAGGCACAGAAAAGATTTCGAATGCAAAAGAAAAAACCAATC-ATATCCTTGC-
195 TTATGGAAAATAAGGCAAAGAAAAGATTTCG-ATGCAAAAG--AAAACC-ATCAATAT-CTTGCA
* * * *
5471 TCCTGAGGAGGGCGAATGT-TGTGA-AGTGACT-CTCATGAAA-GAGTGACAGATTCCATACTTA
255 TCCTGAGGA-GGAGAATGTGT-TTATAGTGCCTAATCATGAAATGAGTGA-AGA-TCCATAC-TA
* *
5532 GAAT-CATGGTTGTCTCATTTGAGG-GCGGACTTAGATTTTTACACAAACTTGGTGGGAAACAAA
315 GAATCCATGTTTGTCTCATTTGAGGCGCGGACTTAGA-TTTTACACAAA-TTGGTGGGAAA-AAG
* * * * *
5595 AGGATATTGCGAAACCAACGCATCAA-ATCCTGTATCCATAT-AGAA-ACTA-GTTTATGGTGCC
377 CGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCC
5656 AAATCC
442 AAATCC
Statistics
Matches: 5095, Mismatches: 63, Indels: 60
0.98 0.01 0.01
Matches are distributed among these distances:
471 13 0.00
472 65 0.01
473 632 0.12
474 2747 0.54
475 1293 0.25
476 222 0.04
477 59 0.01
478 61 0.01
479 3 0.00
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.30
Consensus pattern (474 bp):
TTCATGTTTGTCTTATTTAAAAGACAATTTTGATTCTATCAATAATGGTGGAAAGACAAGCTTCT
CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATC
TTGAAAAGAATGGAGACTGTTACGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTT
TATGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAAAGAAAACCATCAATATCTTGCATCCTGA
GGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAGTGAAGATCCATACTAGAATCCATGTT
TGTCTCATTTGAGGCGCGGACTTAGATTTTACACAAATTGGTGGGAAAAAGCGTATCTTGCGAAA
CCAAAGCATCAATATCATGTATCCATATAAGAAGACTATGTTTATGGTGCCAAATCCAGAAAAGA
ATGGGGATTAGTAAGAGTA
Done.