genome.fa.s2486.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2486
Parameters: 2 7 7 80 10 50 1000
Length:  43778

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1353--1457	20	4.8	20	71	24	86	23	17	16	42	1.88
1353--1507	70	2.2	70	91	0	256	25	16	15	43	1.87
3528--3684	79	2.0	79	85	0	215	29	25	13	31	1.94
3639--3710	28	2.6	28	88	0	108	23	30	22	23	1.99
3562--3898	107	3.1	107	85	0	460	28	27	14	29	1.95
3748--3818	28	2.5	28	86	4	99	25	30	16	26	1.97
3776--3923	79	1.9	79	86	0	215	29	26	12	32	1.92
3774--3947	79	2.2	79	82	0	204	28	27	13	30	1.94
3881--4000	51	2.4	51	82	0	150	27	29	14	29	1.95
3802--4202	130	3.1	128	85	2	525	29	26	12	31	1.92
3808--4186	129	2.9	130	85	3	505	29	26	11	32	1.91
4080--4251	79	2.2	77	84	8	213	27	27	13	31	1.94
6759--6825	37	1.9	35	88	11	102	29	25	11	32	1.92
7283--7308	13	2.0	13	100	0	52	30	15	15	38	1.88
7263--7326	32	2.0	33	90	3	103	28	14	15	42	1.86
7355--7410	21	2.7	21	80	2	69	32	19	12	35	1.89
9406--9567	84	1.9	84	81	7	195	25	20	2	51	1.59
11619--11644	13	2.0	13	100	0	52	30	15	15	38	1.88
11599--11662	32	2.0	33	90	3	103	28	14	15	42	1.86
15450--15604	70	2.2	70	88	0	229	23	15	16	44	1.86
15507--15554	20	2.4	20	89	0	78	22	14	18	43	1.87
17194--17341	79	1.9	79	85	0	206	27	22	14	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17305--17376	28	2.6	28	88	0	99	25	25	22	27	2.00
17226--17565	107	3.2	106	88	1	475	26	25	16	31	1.97
17442--17690	79	3.2	79	83	0	309	27	27	12	31	1.93
17625--17743	51	2.3	51	79	0	139	26	29	12	31	1.93
17548--17920	129	2.9	130	84	0	478	28	27	11	32	1.91
23736--23780	19	2.3	20	84	3	65	22	13	15	48	1.79
25638--25736	28	3.5	28	91	0	162	27	27	19	26	1.99
25560--25843	135	2.1	134	89	0	424	29	26	15	29	1.96
25773--25846	28	2.6	28	91	0	121	25	28	20	25	1.99
25801--25975	79	2.2	78	86	4	251	27	26	15	30	1.96
25666--25923	107	2.4	107	90	1	410	27	26	15	29	1.96
25910--26078	51	3.3	51	80	1	205	27	26	12	33	1.92
25829--26207	181	2.1	180	81	3	458	27	25	12	34	1.93
26011--26155	78	1.8	78	82	7	186	26	24	13	35	1.92
25960--26263	129	2.3	129	85	3	405	28	24	11	35	1.90
32083--32108	7	3.7	7	100	0	52	15	11	26	46	1.80
32185--32221	16	2.3	16	90	0	56	35	0	29	35	1.58
32948--32977	13	2.3	13	94	0	51	33	16	10	40	1.82
32932--33000	33	2.1	33	86	0	93	31	11	20	36	1.88
33901--33941	21	2.0	21	95	0	73	48	9	0	41	1.36
34955--34996	22	2.0	21	90	4	66	45	7	0	47	1.30
40370--40420	21	2.4	22	84	15	72	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40378--40448	14	5.1	14	73	19	51	38	0	1	60	1.06
40368--40431	25	2.8	24	81	15	82	35	0	0	64	0.94
40460--40531	3	23.3	3	76	20	53	27	2	1	68	1.12
40478--40535	16	3.7	17	78	21	65	29	5	0	65	1.14
40460--40549	46	2.0	46	88	0	135	27	7	1	63	1.29
41593--41637	23	2.0	23	90	0	72	26	0	2	71	0.98
42783--42827	13	3.6	12	82	8	54	20	0	2	77	0.87
42786--42828	6	7.0	6	84	5	50	20	0	2	76	0.89
42783--42839	12	4.4	12	78	10	51	24	0	1	73	0.92
43716--43753	15	2.5	15	87	12	51	34	0	0	65	0.93

Tables:   1

The End!