genome.fa.s2487.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2487
Parameters: 2 7 7 80 10 50 1000
Length:  76845

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4119--4322	76	2.6	78	80	5	218	28	16	29	25	1.96
4274--4345	28	2.6	28	88	0	99	23	19	34	22	1.96
4334--4503	52	3.3	52	80	8	177	33	12	24	29	1.92
4490--4558	27	2.5	28	86	9	97	23	21	30	24	1.99
6973--6998	13	2.0	13	100	0	52	38	15	15	30	1.88
6952--7018	33	2.0	33	88	0	98	43	16	14	25	1.86
7038--7105	19	3.9	18	76	23	83	38	14	11	35	1.83
7060--7084	13	1.9	13	100	0	50	32	16	16	36	1.90
7041--7103	32	2.0	32	96	0	117	36	15	12	34	1.86
7161--7217	21	2.7	21	97	0	105	36	19	10	33	1.86
10658--10697	13	2.9	14	81	7	55	77	0	0	22	0.77
10655--10696	7	6.7	6	87	12	50	78	0	0	21	0.75
11147--11192	23	1.9	25	82	8	60	56	6	8	28	1.54
15527--15654	52	2.5	52	94	3	224	30	17	17	33	1.94
15663--15687	13	1.9	13	100	0	50	36	16	16	32	1.90
15728--15794	33	2.0	33	88	0	98	40	13	11	34	1.81
15750--15774	13	1.9	13	100	0	50	32	16	16	36	1.90
16593--16987	171	2.3	171	94	1	682	36	14	24	24	1.93
16901--17994	49	22.7	49	82	9	1275	30	17	26	25	1.97
17448--17515	22	3.1	22	62	26	54	30	17	25	26	1.97
16834--17994	485	2.4	485	93	3	1953	31	17	26	25	1.97
17810--17999	92	2.1	92	94	1	335	31	17	25	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17994--18063	33	2.1	35	94	5	126	20	17	37	25	1.94
18068--18664	34	17.6	33	82	11	572	34	12	32	20	1.90
18179--18232	27	2.0	27	92	0	90	25	14	37	22	1.93
18206--18606	105	3.9	101	89	5	549	32	12	33	20	1.91
18617--18762	31	4.7	31	92	2	231	24	17	31	26	1.97
18486--18765	63	4.4	63	80	10	257	29	15	32	23	1.95
26945--27072	52	2.5	52	94	3	224	30	17	17	33	1.94
27081--27105	13	1.9	13	100	0	50	36	16	16	32	1.90
27146--27212	33	2.0	33	88	0	98	40	13	11	34	1.81
27168--27192	13	1.9	13	100	0	50	32	16	16	36	1.90
32312--32427	51	2.3	51	76	10	119	69	2	8	18	1.26
35186--35210	13	1.9	13	100	0	50	36	16	16	32	1.90
40233--40286	20	2.6	21	88	5	83	44	12	14	27	1.82
40322--40507	102	1.8	101	88	3	284	32	13	10	43	1.79
40322--40505	50	3.6	51	80	3	203	32	13	10	43	1.79
52018--52056	11	3.5	11	85	3	51	0	20	0	79	0.73
52017--52076	27	2.2	28	79	11	70	1	18	3	76	1.00
52541--53077	166	3.2	164	84	3	623	48	10	11	29	1.72
53990--54698	41	17.3	39	68	12	166	18	26	13	41	1.88
54070--54501	82	5.3	81	79	6	338	18	27	14	39	1.90
54123--54507	164	2.3	164	80	2	416	18	27	15	38	1.90
54147--54502	82	4.3	82	80	5	362	18	28	14	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54070--54675	82	7.4	81	77	8	325	18	27	13	40	1.88
54455--54702	82	3.0	82	81	0	289	19	27	10	42	1.85
54472--54698	123	1.8	123	84	5	307	20	26	10	42	1.84
55851--55903	13	4.5	13	69	26	55	35	16	13	33	1.88
55854--55918	33	2.0	33	90	6	105	33	18	13	33	1.90
56587--56640	27	2.0	27	88	0	81	33	16	9	40	1.80
56616--56660	20	2.2	21	92	4	74	31	24	4	40	1.75
63336--63412	20	3.8	20	96	0	136	41	9	18	31	1.81

Tables:   1

The End!