Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2494
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 76010
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.41
Found at i:84 original size:33 final size:32
Alignment explanation
Indices: 41--102 Score: 106
Period size: 33 Copynumber: 1.9 Consensus size: 32
31 TGAAACCAGT
41 TTTTCCCTACTAATGAAAGTGGTTCCTGTCAG
1 TTTTCCCTACTAATGAAAGTGGTTCCTGTCAG
*
73 TTTTCCACTACTACTGAAAGTGGTTCCTGT
1 TTTTCC-CTACTAATGAAAGTGGTTCCTGT
103 TTTTCTGCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
32 6 0.21
33 22 0.79
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.39
Consensus pattern (32 bp):
TTTTCCCTACTAATGAAAGTGGTTCCTGTCAG
Found at i:1525 original size:21 final size:22
Alignment explanation
Indices: 1491--1533 Score: 79
Period size: 21 Copynumber: 2.0 Consensus size: 22
1481 GTAAAGCGTT
1491 TTTTAGATTTTCATGAACGTGG
1 TTTTAGATTTTCATGAACGTGG
1513 TTTTAGA-TTTCATGAACGTGG
1 TTTTAGATTTTCATGAACGTGG
1534 GCAGGCTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.23, C:0.09, G:0.23, T:0.44
Consensus pattern (22 bp):
TTTTAGATTTTCATGAACGTGG
Found at i:2959 original size:15 final size:15
Alignment explanation
Indices: 2939--2969 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
2929 GCATGATTTC
2939 TGTTTATTCCCTTTG
1 TGTTTATTCCCTTTG
2954 TGTTTATTCCCTTTG
1 TGTTTATTCCCTTTG
2969 T
1 T
2970 TAATCTGCTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.19, G:0.13, T:0.61
Consensus pattern (15 bp):
TGTTTATTCCCTTTG
Found at i:7544 original size:3 final size:3
Alignment explanation
Indices: 7536--7565 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
7526 AACTTGTCTA
7536 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7566 AAAAGGAGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:13697 original size:1 final size:1
Alignment explanation
Indices: 13691--13715 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
13681 TTTCTGTTCT
13691 CCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCC
13716 TCCTTTCTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00
Consensus pattern (1 bp):
C
Found at i:14892 original size:31 final size:31
Alignment explanation
Indices: 14857--14915 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
14847 ATTTTACTGG
*
14857 CTTCTGACCAATTAAGTCTGTTTATAAACGA
1 CTTCTGACCAATTAAGTCGGTTTATAAACGA
*
14888 CTTCTGATCAATTAAGTCGGTTTATAAA
1 CTTCTGACCAATTAAGTCGGTTTATAAA
14916 ATTTATCAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (31 bp):
CTTCTGACCAATTAAGTCGGTTTATAAACGA
Found at i:15302 original size:16 final size:17
Alignment explanation
Indices: 15276--15319 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
15266 TAGTACTCTC
15276 TTTTCTCCTTTCA-ATTT
1 TTTTCT-CTTTCACATTT
*
15293 TTTTCTCTTTTACATTT
1 TTTTCTCTTTCACATTT
*
15310 TTTCCTCTTT
1 TTTTCTCTTT
15320 TGCTGAAGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 5 0.21
17 19 0.79
ACGTcount: A:0.09, C:0.23, G:0.00, T:0.68
Consensus pattern (17 bp):
TTTTCTCTTTCACATTT
Found at i:21930 original size:2 final size:2
Alignment explanation
Indices: 21911--21947 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
21901 ACTTGCTTTG
* *
21911 TA TA TG TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
21948 TATGTTTCTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.51
Consensus pattern (2 bp):
TA
Found at i:25581 original size:16 final size:16
Alignment explanation
Indices: 25560--25591 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
25550 AGTATTATTT
25560 TTAATATACTTGTGAA
1 TTAATATACTTGTGAA
25576 TTAATATACTTGTGAA
1 TTAATATACTTGTGAA
25592 GCTTGAGCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.12, T:0.44
Consensus pattern (16 bp):
TTAATATACTTGTGAA
Found at i:27260 original size:28 final size:28
Alignment explanation
Indices: 27229--27320 Score: 100
Period size: 28 Copynumber: 3.3 Consensus size: 28
27219 TTATTATATG
27229 TAAATAAATTAATAATTTTAA-TTGATAT
1 TAAATAAATTAATAATTTTAATTTG-TAT
*
27257 TAAATAAATT-TTAATTTTTAATTTGTAT
1 TAAATAAATTAATAA-TTTTAATTTGTAT
***
27285 TAAATTTTTTAA-AATTTTAATTTGTAT
1 TAAATAAATTAATAATTTTAATTTGTAT
27312 TAAAATAAA
1 T-AAATAAA
27321 ATTTTTTTAT
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
27 17 0.33
28 32 0.62
29 3 0.06
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (28 bp):
TAAATAAATTAATAATTTTAATTTGTAT
Found at i:27324 original size:23 final size:24
Alignment explanation
Indices: 27294--27351 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 24
27284 TTAAATTTTT
*
27294 TAAAATTTTAATT-TGTATTAAAA
1 TAAAATTTTAATTATATATTAAAA
* *
27317 TAAAATTTT-TTTATATATTTAAA
1 TAAAATTTTAATTATATATTAAAA
*
27340 TAAATTTTTAAT
1 TAAAATTTTAAT
27352 ATGAATAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
22 2 0.07
23 25 0.89
24 1 0.04
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (24 bp):
TAAAATTTTAATTATATATTAAAA
Found at i:27385 original size:14 final size:16
Alignment explanation
Indices: 27366--27397 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
27356 ATAAAATTTA
27366 ATTT-AATAAAAA-AT
1 ATTTAAATAAAAATAT
27380 ATTTAAATAAAAATAT
1 ATTTAAATAAAAATAT
27396 AT
1 AT
27398 ATAAGGTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.25
15 8 0.50
16 4 0.25
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
ATTTAAATAAAAATAT
Found at i:30897 original size:17 final size:16
Alignment explanation
Indices: 30873--30914 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
30863 CTCTCTGTAG
*
30873 TATATTTTTCTTTTTTT
1 TATATTTTT-TATTTTT
*
30890 TTTATTTTTTATTTTT
1 TATATTTTTTATTTTT
30906 TATATTTTT
1 TATATTTTT
30915 GAAGGGGGGG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 14 0.64
17 8 0.36
ACGTcount: A:0.14, C:0.02, G:0.00, T:0.83
Consensus pattern (16 bp):
TATATTTTTTATTTTT
Found at i:38101 original size:33 final size:32
Alignment explanation
Indices: 38058--38119 Score: 106
Period size: 33 Copynumber: 1.9 Consensus size: 32
38048 TGAAACCAGT
38058 TTTTCCCTACTAATGAAAGTGGTTCCTGTCAG
1 TTTTCCCTACTAATGAAAGTGGTTCCTGTCAG
*
38090 TTTTCCACTACTACTGAAAGTGGTTCCTGT
1 TTTTCC-CTACTAATGAAAGTGGTTCCTGT
38120 TTTTCTGCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
32 6 0.21
33 22 0.79
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.39
Consensus pattern (32 bp):
TTTTCCCTACTAATGAAAGTGGTTCCTGTCAG
Found at i:39537 original size:21 final size:21
Alignment explanation
Indices: 39512--39553 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
39502 GTAAAGCGTT
39512 TTTTAGATTTTCATGAACGTG
1 TTTTAGATTTTCATGAACGTG
39533 TTTTAGATTTTCATGAACGTG
1 TTTTAGATTTTCATGAACGTG
39554 GGCAGGCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.10, G:0.19, T:0.48
Consensus pattern (21 bp):
TTTTAGATTTTCATGAACGTG
Found at i:40978 original size:15 final size:15
Alignment explanation
Indices: 40958--40988 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
40948 GCATGATTTC
40958 TGTTTATTCCCTTTG
1 TGTTTATTCCCTTTG
40973 TGTTTATTCCCTTTG
1 TGTTTATTCCCTTTG
40988 T
1 T
40989 TAATCTGCTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.19, G:0.13, T:0.61
Consensus pattern (15 bp):
TGTTTATTCCCTTTG
Found at i:45562 original size:3 final size:3
Alignment explanation
Indices: 45554--45583 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
45544 AACTTGTCTA
45554 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
45584 AAAAGGAGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:52897 original size:30 final size:31
Alignment explanation
Indices: 52863--52920 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 31
52853 CATTTACTGG
*
52863 CTTCTGACCAATTAAGTCTG-TTTATAACGA
1 CTTCTGACCAATTAAGTCGGTTTTATAACGA
*
52893 CTTCTGATCAATTAAGTCGGTTTTATAA
1 CTTCTGACCAATTAAGTCGGTTTTATAA
52921 AATTTATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 18 0.72
31 7 0.28
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (31 bp):
CTTCTGACCAATTAAGTCGGTTTTATAACGA
Found at i:53318 original size:18 final size:17
Alignment explanation
Indices: 53281--53325 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
53271 TAGTACTCTC
*
53281 TTTTCTCCTTTCAATTT
1 TTTTCTCTTTTCAATTT
53298 TTTTCTCTTTT-ACATTT
1 TTTTCTCTTTTCA-ATTT
53315 TTTTCCTCTTT
1 TTTT-CTCTTT
53326 GCTGAAGGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 1 0.04
17 18 0.72
18 6 0.24
ACGTcount: A:0.09, C:0.22, G:0.00, T:0.69
Consensus pattern (17 bp):
TTTTCTCTTTTCAATTT
Found at i:59933 original size:2 final size:2
Alignment explanation
Indices: 59914--59950 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
59904 ACTTGCTTTG
* *
59914 TA TA TG TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
59951 TATGTTTCTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.51
Consensus pattern (2 bp):
TA
Found at i:63585 original size:16 final size:16
Alignment explanation
Indices: 63564--63595 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
63554 AGTATTATTT
63564 TTAATATACTTGTGAA
1 TTAATATACTTGTGAA
63580 TTAATATACTTGTGAA
1 TTAATATACTTGTGAA
63596 GCTTGAGCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.12, T:0.44
Consensus pattern (16 bp):
TTAATATACTTGTGAA
Found at i:65254 original size:28 final size:28
Alignment explanation
Indices: 65222--65358 Score: 88
Period size: 28 Copynumber: 4.9 Consensus size: 28
65212 AAGTTTTTAT
65222 ATTTTTATT-ATATGTAAATAAATTAATA
1 ATTTTTATTGATAT-TAAATAAATTAATA
* **
65250 ATTTTAATTGATATTAAATAAATTTTTA
1 ATTTTTATTGATATTAAATAAATTAATA
***
65278 ATTTTTAATTTG-TATTAAATTTTTTAA-A
1 ATTTTT-A-TTGATATTAAATAAATTAATA
* * *
65306 ATTTTAATTTG-TATTAAAATAAAATT-TTT
1 ATTTTTA-TTGATATT-AAAT-AAATTAATA
65335 ATTTTTATAT-ATATTAAATAAATT
1 ATTTTTAT-TGATATTAAATAAATT
65359 TTTAATATGA
Statistics
Matches: 85, Mismatches: 16, Indels: 17
0.72 0.14 0.14
Matches are distributed among these distances:
27 14 0.16
28 40 0.47
29 28 0.33
30 3 0.04
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (28 bp):
ATTTTTATTGATATTAAATAAATTAATA
Found at i:65263 original size:29 final size:27
Alignment explanation
Indices: 65222--65358 Score: 89
Period size: 29 Copynumber: 4.9 Consensus size: 27
65212 AAGTTTTTAT
*
65222 ATTTTTATTATATGTAAATAAATTAATA
1 ATTTTAATTATAT-TAAATAAATTAATA
**
65250 ATTTTAATTGATATTAAATAAATTTTTA
1 ATTTTAATT-ATATTAAATAAATTAATA
* ***
65278 ATTTTTAATTTGTATTAAATTTTTTAA-A
1 A-TTTTAA-TTATATTAAATAAATTAATA
* * *
65306 ATTTTAATTTGTATTAAAATAAAATT-TTT
1 ATTTTAA-TTATATT-AAAT-AAATTAATA
*
65335 ATTTTTATATATATTAAATAAATT
1 ATTTTAAT-TATATTAAATAAATT
65359 TTTAATATGA
Statistics
Matches: 86, Mismatches: 16, Indels: 15
0.74 0.14 0.13
Matches are distributed among these distances:
27 19 0.22
28 32 0.37
29 33 0.38
30 2 0.02
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (27 bp):
ATTTTAATTATATTAAATAAATTAATA
Found at i:65297 original size:57 final size:56
Alignment explanation
Indices: 65209--65358 Score: 164
Period size: 57 Copynumber: 2.6 Consensus size: 56
65199 CTTTTTGCAG
*
65209 AATAAGTTTTTATATTTTTA-TTATATGTAAATAAATTAATAATTTTAA-TTGATATT-A
1 AATAAATTTTTA-ATTTTTATTTATAT-TAAATAAATTAA-AATTTTAATTTG-TATTAA
* ***
65266 AATAAATTTTTAATTTTTAATTTGTATTAAATTTTTTAAAATTTTAATTTGTATTAA
1 AATAAATTTTTAATTTTT-ATTTATATTAAATAAATTAAAATTTTAATTTGTATTAA
*
65323 AATAAAATTTTT-ATTTTTATATATATTAAATAAATT
1 AAT-AAATTTTTAATTTTTATTTATATTAAATAAATT
65359 TTTAATATGA
Statistics
Matches: 78, Mismatches: 10, Indels: 11
0.79 0.10 0.11
Matches are distributed among these distances:
56 31 0.40
57 34 0.44
58 13 0.17
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (56 bp):
AATAAATTTTTAATTTTTATTTATATTAAATAAATTAAAATTTTAATTTGTATTAA
Found at i:65310 original size:27 final size:28
Alignment explanation
Indices: 65244--65323 Score: 94
Period size: 27 Copynumber: 2.8 Consensus size: 28
65234 TGTAAATAAA
65244 TTAATAATTTTAA-TTGATATTAAATAAATTT
1 TTAA-AATTTTAATTTG-TATTAAAT--ATTT
*
65275 TT-AATTTTTAATTTGTATTAAAT-TTT
1 TTAAAATTTTAATTTGTATTAAATATTT
65301 TTAAAATTTTAATTTGTATTAAA
1 TTAAAATTTTAATTTGTATTAAA
65324 ATAAAATTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
26 5 0.11
27 19 0.42
29 15 0.33
30 4 0.09
31 2 0.04
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (28 bp):
TTAAAATTTTAATTTGTATTAAATATTT
Found at i:65350 original size:56 final size:54
Alignment explanation
Indices: 65216--65358 Score: 155
Period size: 56 Copynumber: 2.5 Consensus size: 54
65206 CAGAATAAGT
65216 TTTTATATTTTTATTATATGTAAATAAATTAATAATTTTAATTGATATTAAATAAA
1 TTTT-TATTTTTATTATAT-TAAATAAATTAATAATTTTAATTGATATTAAATAAA
* ***
65272 TTTTTAATTTTTAATTTGTATTAAATTTTTTAA-AATTTTAATTTG-TATTAAAATAAAA
1 TTTTT-ATTTTT-A-TTATATTAAATAAATTAATAATTTTAA-TTGATATT-AAAT-AAA
65330 TTTTTATTTTTATATATATTAAATAAATT
1 TTTTTATTTTTAT-TATATTAAATAAATT
65359 TTTAATATGA
Statistics
Matches: 72, Mismatches: 8, Indels: 14
0.77 0.09 0.15
Matches are distributed among these distances:
55 2 0.03
56 34 0.47
57 23 0.32
58 13 0.18
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (54 bp):
TTTTTATTTTTATTATATTAAATAAATTAATAATTTTAATTGATATTAAATAAA
Found at i:65388 original size:17 final size:17
Alignment explanation
Indices: 65348--65391 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 17
65338 TTTATATATA
*
65348 TTAAATAAATTTTTAAT
1 TTAAATAAAATTTTAAT
* *
65365 ATGAATAAAATTTTAAT
1 TTAAATAAAATTTTAAT
65382 TTAAATAAAA
1 TTAAATAAAA
65392 AATATTTAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (17 bp):
TTAAATAAAATTTTAAT
Found at i:65400 original size:15 final size:16
Alignment explanation
Indices: 65380--65412 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
65370 TAAAATTTTA
65380 ATTTAAATAAAA-AAT
1 ATTTAAATAAAATAAT
65395 ATTTAAATAAAATAAT
1 ATTTAAATAAAATAAT
65411 AT
1 AT
65413 AATTAAGGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
ATTTAAATAAAATAAT
Found at i:65407 original size:20 final size:19
Alignment explanation
Indices: 65371--65409 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
65361 TAATATGAAT
* *
65371 AAAATTTTAATTTAAATAA
1 AAAATTTTAAATAAAATAA
65390 AAAATATTTAAATAAAATAA
1 AAAAT-TTTAAATAAAATAA
65410 TATAATTAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (19 bp):
AAAATTTTAAATAAAATAA
Found at i:68919 original size:17 final size:16
Alignment explanation
Indices: 68895--68936 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
68885 CTCTCTGTAG
*
68895 TATATTTTTCTTTTTTT
1 TATATTTTT-TATTTTT
*
68912 TTTATTTTTTATTTTT
1 TATATTTTTTATTTTT
68928 TATATTTTT
1 TATATTTTT
68937 GAAGGGGGGG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 14 0.64
17 8 0.36
ACGTcount: A:0.14, C:0.02, G:0.00, T:0.83
Consensus pattern (16 bp):
TATATTTTTTATTTTT
Done.