genome.fa.s2497.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2497
Parameters: 2 7 7 80 10 50 1000
Length:  58499

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
266--292	14	1.9	14	100	0	54	0	37	7	55	1.28
267--301	14	2.4	14	90	4	52	0	37	5	57	1.23
624--661	17	2.3	16	86	13	51	0	23	0	76	0.79
11008--11038	16	2.0	15	93	6	53	19	0	3	77	0.90
11514--11552	16	2.4	16	84	16	53	74	12	5	7	1.20
20241--20296	26	2.1	27	87	9	80	50	1	1	46	1.22
20317--20350	17	2.0	17	94	0	59	38	0	0	61	0.96
20522--20565	20	2.2	20	84	8	54	56	0	2	40	1.11
20539--20589	20	2.5	20	83	0	57	66	1	1	29	1.13
20790--20831	19	2.2	19	83	8	50	57	2	4	35	1.33
21068--21127	23	2.7	21	73	14	57	61	6	3	28	1.37
21359--21415	12	4.5	12	81	16	62	0	21	0	78	0.74
21360--21413	20	2.8	20	86	5	76	0	20	0	79	0.73
22602--22820	34	6.5	34	83	1	244	40	26	7	26	1.83
22600--22820	68	3.3	67	83	2	280	40	26	7	25	1.82
22600--22820	102	2.2	101	87	3	318	40	26	7	25	1.82
26892--26928	19	1.9	19	94	0	65	35	10	18	35	1.86
27237--27384	34	4.4	34	81	4	156	43	25	5	26	1.76
27235--27384	68	2.2	68	80	3	187	43	25	5	26	1.76
28448--28483	2	18.0	2	100	0	72	50	0	0	50	1.00
29560--29642	37	2.3	37	89	2	123	43	1	0	55	1.07
30049--30095	24	2.0	24	84	12	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30146--30221	21	3.6	21	68	19	59	59	2	0	38	1.12
30177--30225	10	4.5	11	82	10	57	61	2	0	36	1.08
30177--30211	16	2.1	18	89	10	56	60	2	0	37	1.12
30685--30836	75	2.0	75	87	0	214	38	21	8	30	1.84
31265--31304	15	2.7	15	80	0	53	17	10	47	25	1.78
36183--36221	14	2.7	14	92	4	60	43	23	2	30	1.67
37405--37474	32	2.2	32	82	5	88	50	0	7	42	1.30
39184--39215	16	2.0	16	93	0	55	37	12	3	46	1.57
39234--39283	8	6.0	8	84	9	64	80	0	0	20	0.72
39233--39273	18	2.3	18	91	0	64	85	0	0	14	0.60
39229--39301	26	2.8	26	82	2	92	76	0	1	21	0.86
39232--39282	17	2.9	19	86	13	74	80	0	0	19	0.71
39229--39287	17	3.4	17	75	11	57	77	0	0	22	0.76
41096--41135	21	2.0	21	86	13	59	52	7	0	40	1.30
41676--41786	9	14.5	8	70	19	51	57	1	0	40	1.09
41686--41711	12	2.2	12	100	0	52	57	0	0	42	0.98
41699--41728	9	3.3	9	100	0	60	56	0	0	43	0.99
41673--41720	21	2.3	20	89	3	69	52	2	0	45	1.12
41715--41759	20	2.2	21	84	11	58	62	0	0	37	0.96
41820--41922	12	8.3	12	71	14	75	52	1	0	44	1.18
41821--41943	51	2.5	48	79	9	124	54	3	0	41	1.22
41860--41918	11	4.9	12	80	14	50	55	1	1	40	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41853--41921	13	5.7	12	78	13	61	55	1	1	42	1.18
41820--41949	24	5.3	23	72	18	77	53	3	0	42	1.21
42026--42055	2	15.0	2	100	0	60	0	50	0	50	1.00
43233--43281	21	2.3	21	82	6	64	48	0	0	51	1.00
43418--43471	27	2.0	27	85	3	72	44	0	5	50	1.25
46562--46603	22	1.9	22	90	9	68	54	0	0	45	0.99
46571--46638	30	2.3	30	82	7	86	54	0	0	45	0.99
46585--46618	13	2.5	14	90	4	52	58	0	0	41	0.98
46589--46638	24	2.1	24	85	7	66	56	0	0	44	0.99
46829--46865	19	1.9	19	88	0	56	40	0	2	56	1.13
46837--46886	25	2.0	25	84	11	66	40	0	0	60	0.97
47058--47135	24	3.3	23	77	10	77	56	2	0	41	1.13
47076--47135	25	2.5	24	82	15	72	55	3	0	41	1.16
47304--47443	69	2.0	69	100	0	280	17	21	12	48	1.80
51402--51445	19	2.3	19	80	7	54	50	0	0	50	1.00
51787--51837	22	2.3	21	77	12	50	31	0	1	66	1.03
51785--51841	30	1.9	31	89	7	91	36	0	1	61	1.07
52081--52132	14	3.6	14	75	14	61	61	3	0	34	1.14
52085--52171	29	2.9	29	80	10	79	52	6	0	40	1.28
53519--53570	20	2.6	20	90	0	77	78	0	19	1	0.84
53525--53561	14	2.5	14	91	8	56	75	0	21	2	0.92

Tables:   1

The End!