genome.fa.s2499.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2499
Parameters: 2 7 7 80 10 50 1000
Length:  91129

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
395--13843	159	85.1	155	63	16	1700	36	15	18	29	1.93
14--14172	477	29.9	477	91	2	21380	35	15	18	29	1.93
14--14172	953	14.9	952	92	2	21552	35	15	18	29	1.93
13857--14488	317	2.0	316	87	1	899	38	14	19	27	1.91
13380--14965	792	2.0	794	89	0	2415	36	15	19	28	1.92
14174--15839	475	3.5	475	90	1	2708	35	16	19	28	1.93
15446--16227	395	2.0	396	90	1	1230	35	16	18	28	1.93
15842--41856	476	54.7	478	92	0	41380	36	15	19	29	1.93
16692--41642	159	157.3	155	62	15	2985	36	15	19	29	1.93
41870--44065	159	13.9	155	64	13	498	29	18	15	36	1.92
41853--44433	476	5.4	476	91	1	4038	29	18	15	36	1.92
46039--46157	42	2.8	42	84	0	157	43	3	43	9	1.53
51143--51755	159	3.9	157	66	14	416	29	18	15	35	1.93
51717--52281	284	2.0	284	91	0	923	30	19	14	35	1.92
51246--52756	760	2.0	755	93	1	2594	29	19	15	36	1.92
52001--53232	476	2.6	475	90	0	1935	29	18	15	36	1.92
52477--53992	760	2.0	760	91	0	2444	29	18	15	35	1.93
52958--53516	284	2.0	284	91	0	902	31	20	14	34	1.92
53238--56847	476	7.6	476	93	0	5975	29	18	15	36	1.92
53544--56557	159	19.0	155	64	15	737	28	18	16	36	1.92
53237--67648	952	15.1	952	83	7	12097	29	18	15	36	1.92
57136--60749	476	7.6	477	91	0	5813	29	18	15	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60755--64364	476	7.6	476	94	0	6004	29	18	16	36	1.92
64950--67549	159	16.4	156	64	15	723	29	18	15	36	1.92
64653--67648	477	6.3	476	92	0	4904	29	18	15	36	1.92
67516--67785	137	2.0	137	88	1	407	30	21	11	37	1.89
67826--69457	159	10.3	157	64	14	478	29	18	15	36	1.92
67653--69578	477	4.0	477	92	0	3036	29	18	15	36	1.92
69577--73232	476	7.7	474	90	2	5428	29	18	15	36	1.92
69581--73232	951	3.8	949	89	2	5465	29	18	15	36	1.92
71954--71998	20	2.2	20	100	0	90	13	20	13	53	1.72
72269--72914	158	4.1	156	65	14	397	29	18	15	36	1.91
76866--76896	15	2.1	15	93	0	53	48	16	22	12	1.80
78123--78174	19	2.7	20	87	6	79	28	13	15	42	1.85
80454--91049	477	22.3	476	91	1	16192	29	18	15	36	1.92
80846--90572	159	61.4	156	63	15	1172	29	18	15	36	1.92

Tables:   1

The End!