Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold25
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9553305
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 6276 characters in sequence are not A, C, G, or T
File 26 of 56
Found at i:4447771 original size:17 final size:17
Alignment explanation
Indices: 4447749--4447782 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
4447739 CAGTGATAAT
4447749 AAAATAAAAATAAAATA
1 AAAATAAAAATAAAATA
* *
4447766 AAAATAATAATTAAATA
1 AAAATAAAAATAAAATA
4447783 CATTTGATTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (17 bp):
AAAATAAAAATAAAATA
Found at i:4447837 original size:25 final size:26
Alignment explanation
Indices: 4447789--4447838 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
4447779 AATACATTTG
*
4447789 ATTAAAATATGTATATATAATAAATA
1 ATTAAAATATATATATATAATAAATA
* *
4447815 ATTAAAAT-TATATTTATATTAAAT
1 ATTAAAATATATATATATAATAAAT
4447839 GACAAAATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 13 0.62
26 8 0.38
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (26 bp):
ATTAAAATATATATATATAATAAATA
Found at i:4447891 original size:35 final size:34
Alignment explanation
Indices: 4447808--4447968 Score: 112
Period size: 35 Copynumber: 4.6 Consensus size: 34
4447798 TGTATATATA
* * *
4447808 ATAAA-TAATTAAAATTATATTTATATTAAATGAC
1 ATAAATTAA-TAAAATTATATTTATGTTAAATAAT
*
4447842 A-AAATATAAATAAAATTATGTTTATGTTAAATAATT
1 ATAAAT-T-AATAAAATTATATTTATGTTAAATAA-T
* * * *
4447878 ATAAATTATTAAAATGATATTTAT-TAAAATTAT
1 ATAAATTAATAAAATTATATTTATGTTAAATAAT
* * *
4447911 ATTCAATTAATAAATTATTAAAATTATGTTAAATAATT
1 A-TAAATTAATAAA--ATTATATTTATGTTAAATAA-T
* *
4447949 AAAAATTAATAAAAATATAT
1 ATAAATTAATAAAATTATAT
4447969 CAAATAATAT
Statistics
Matches: 96, Mismatches: 21, Indels: 19
0.71 0.15 0.14
Matches are distributed among these distances:
33 5 0.05
34 17 0.18
35 40 0.42
36 12 0.12
37 20 0.21
38 2 0.02
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.42
Consensus pattern (34 bp):
ATAAATTAATAAAATTATATTTATGTTAAATAAT
Found at i:4447903 original size:15 final size:15
Alignment explanation
Indices: 4447883--4447913 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
4447873 TAATTATAAA
4447883 TTATTAAAATGATAT
1 TTATTAAAATGATAT
*
4447898 TTATTAAAATTATAT
1 TTATTAAAATGATAT
4447913 T
1 T
4447914 CAATTAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (15 bp):
TTATTAAAATGATAT
Found at i:4447951 original size:27 final size:27
Alignment explanation
Indices: 4447898--4447977 Score: 83
Period size: 29 Copynumber: 2.9 Consensus size: 27
4447888 AAAATGATAT
*
4447898 TTATTAAAATTATATTCAATTAATAAA
1 TTATTAAAATTATATTCAAATAATAAA
*
4447925 TTATTAAAATTATGTT-AAATAATTAAAAA
1 TTATTAAAATTATATTCAAATAA-T--AAA
* *
4447954 TTAATAAAAATATA-TCAAATAATA
1 TTATTAAAATTATATTCAAATAATA
4447978 TTTTATATTT
Statistics
Matches: 44, Mismatches: 5, Indels: 9
0.76 0.09 0.16
Matches are distributed among these distances:
26 6 0.14
27 16 0.36
28 2 0.05
29 20 0.45
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (27 bp):
TTATTAAAATTATATTCAAATAATAAA
Found at i:4448661 original size:157 final size:157
Alignment explanation
Indices: 4448500--4448810 Score: 466
Period size: 157 Copynumber: 2.0 Consensus size: 157
4448490 ACTTATCCTC
** *
4448500 TGAATTTCAAAATAATTTCACTTTCT-CTCCTAAAATTTGGATAATAAATTTTTTTTCCT-CTAA
1 TGAATTTCAAAATAATTTCACTTTCTCCT-CTAAAATTTGGATAAT-AACCTCTTTTCCTCCTAA
* * * * *
4448563 GGTTTAATATAAAATATACTTATCCCTCTAAAATATAATTTATAAGTTAATTTTAAATAAAAAAA
64 AGCTTAATATAAAATACACTTACCCCTCTAAAATATAATTTACAAGTTAATTTTAAATAAAAAAA
4448628 TAAATATAC-CTTTTGTTAATTATTAACTA
129 TAAATATACTC-TTTGTTAATTATTAACTA
* *
4448657 TGAATTTCAAAATAATTTCACTTTCTCCTCTAAAGTTTGGATAATACCCTCTTTTCCTCCTAAAG
1 TGAATTTCAAAATAATTTCACTTTCTCCTCTAAAATTTGGATAATAACCTCTTTTCCTCCTAAAG
* *
4448722 CTTAATATAAAATACACTTACCCCTCTAAAATATAATTTACAGGTTAATTTTAAATAAAAAGATA
66 CTTAATATAAAATACACTTACCCCTCTAAAATATAATTTACAAGTTAATTTTAAATAAAAAAATA
4448787 AATATACTCTTTGTTAATTATTAA
131 AATATACTCTTTGTTAATTATTAA
4448811 TTTTTATTTT
Statistics
Matches: 139, Mismatches: 12, Indels: 6
0.89 0.08 0.04
Matches are distributed among these distances:
156 9 0.06
157 127 0.91
158 3 0.02
ACGTcount: A:0.40, C:0.14, G:0.05, T:0.41
Consensus pattern (157 bp):
TGAATTTCAAAATAATTTCACTTTCTCCTCTAAAATTTGGATAATAACCTCTTTTCCTCCTAAAG
CTTAATATAAAATACACTTACCCCTCTAAAATATAATTTACAAGTTAATTTTAAATAAAAAAATA
AATATACTCTTTGTTAATTATTAACTA
Found at i:4448905 original size:16 final size:16
Alignment explanation
Indices: 4448884--4448918 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
4448874 ACTATCTTTA
*
4448884 ATTATTGTTAAATTAT
1 ATTATTATTAAATTAT
*
4448900 ATTATTATTAAGTTAT
1 ATTATTATTAAATTAT
4448916 ATT
1 ATT
4448919 CTAATCCAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (16 bp):
ATTATTATTAAATTAT
Found at i:4449871 original size:22 final size:20
Alignment explanation
Indices: 4449831--4451272 Score: 312
Period size: 22 Copynumber: 69.1 Consensus size: 20
4449821 CTGGGGGGTC
*
4449831 GGGCGGG-GGGGGGGCGGGG
1 GGGCGGGAGGGGGGGAGGGG
4449850 GGGCGGGAGGGTGCGGGAGGGG
1 GGGCGGGAGGG-G-GGGAGGGG
*
4449872 GGGCGGGAGGGGAGGGAGGGA
1 GGGCGGGAGGGG-GGGAGGGG
*
4449893 GGGCGGGGGGGTGGAGTGGAGGAGG
1 GGGC-GGGAGG-GG-G-GGAGG-GG
4449918 TGGGCGAAGGGAGGGGGGG-GTGTGAG
1 -GGGC---GGGAGGGGGGGAG-G-G-G
* * *
4449944 GGGGGGGCGCGGGGAGAGGGG
1 GGGCGGGAG-GGGGGGAGGGG
*
4449965 GGG-GGAAGGGGGGGAAAGGGAG
1 GGGCGGGAGGGGGGG--AGGG-G
* ** *
4449987 CGGGGGGGAAAGGGGGCGGGG
1 -GGGCGGGAGGGGGGGAGGGG
4450008 GGTTG-GGGAGGAGGGGGAGTGGGG
1 GG--GCGGGAGG-GGGGGA--GGGG
* *
4450032 GGGTGGGGGCGGGGGGAGGGG
1 GGGCGGGAG-GGGGGGAGGGG
4450053 GGG-GGG-GCGGGGGG-GGGG
1 GGGCGGGAG-GGGGGGAGGGG
*** *
4450071 GGGATTGAGGGGGAG-GGGG
1 GGGCGGGAGGGGGGGAGGGG
*
4450090 GGGCGGGGGGGGGGGA-GGG
1 GGGCGGGAGGGGGGGAGGGG
*
4450109 GGG-GGGA-AGGGGGAGGGAG
1 GGGCGGGAGGGGGGGAGGG-G
* *
4450128 CGGTGTGGTTAGTGTGGGTGG-GGGTAG
1 -GG-GCGG-GAG-G-GGG-GGAGGG--G
* * *
4450155 GGGGGGGATGGAGGGAGGGG
1 GGGCGGGAGGGGGGGAGGGG
*
4450175 GGG-GGGTGGGGGGG-GGGG
1 GGGCGGGAGGGGGGGAGGGG
*
4450193 GGGGGGGAGGGGGGGAGAGAAGG
1 GGGCGGGAGGGGGGGAG-G--GG
*
4450216 GGGAGGG-GGGGGGGAGCTAGTGAG
1 GGGCGGGAGGGGGGGAG---G-G-G
** * * *
4450240 CAGAGGGAAGAGGGGGAGGGC
1 GGGCGGG-AGGGGGGGAGGGG
* * *
4450261 TGG-GGGTGGGGTGGGAGAGGT
1 GGGCGGGAGGGG-GGGAG-GGG
* * *
4450282 GAGTGGG-GGGGTGG-GGGG
1 GGGCGGGAGGGGGGGAGGGG
* *
4450300 GGGAGCGAGGGGGGGAGGGGG
1 GGGCGGGAGGGGGGGA-GGGG
* *
4450321 GGGGGGGTGGGGGGGGTAAGTGGAAAG
1 GGGCGGG-AGGGGGGG--AG-GG---G
* ****
4450348 TGGG-TGGAGCGGGGGTCTAGG
1 -GGGCGGGAG-GGGGGGAGGGG
*
4450369 GGG-GGAAGGGGGGG-GGGG
1 GGGCGGGAGGGGGGGAGGGG
4450387 GTGGCGTGGAGGGGGGAGGAGGGCG
1 G-GGCG-GGA-GGGGG-GGAGGG-G
4450412 GTGTGCTGGGTAGGGGGGGGAGGAAGG
1 G-G-GC-GGG-A-GGGGGGGAGG--GG
4450439 GGG-GGGAGGGAGGAGGAGGGGTAG
1 GGGCGGGAGGG-GG-GGA-GGG--G
* * *
4450463 GGGTGGGTGGGGGGTAGGGG
1 GGGCGGGAGGGGGGGAGGGG
* *
4450483 TGGTGGGGGAGGGGGGGGGGTGG
1 -GG-GCGGGAGGGGGGGAGG-GG
*
4450506 GGGGGGGA-GGGGGG-GGGG
1 GGGCGGGAGGGGGGGAGGGG
4450524 GGGCGGG-GTGGTGGGG-GGAGG
1 GGGCGGGAG-GG-GGGGAGG-GG
* * *
4450545 GGGGGGGAGTGGGGTAGGATGGT
1 GGGCGGGAG-GGGG--GGAGGGG
* *
4450568 GGGTGGGAGGGGGGGGGGTGGG
1 GGGCGGGA-GGGGGGGAG-GGG
*
4450590 TGGGGGGGAGTGGGGGG-GGGG
1 -GGGCGGGAG-GGGGGGAGGGG
* *
4450611 AGTGG-GGTTGAGGGGCGG-GGTG
1 -G-GGCGG--GAGGGGGGGAGGGG
4450633 GGG-GGGAGGGGGGGAAGGGG
1 GGGCGGGAGGGGGGG-AGGGG
4450653 GGG-GGG-GGGTGGGG-GGGG
1 GGGCGGGAGGG-GGGGAGGGG
4450671 GGG-GTGG-GGGGGGGAGGGG
1 GGGCG-GGAGGGGGGGAGGGG
4450690 GGG-GGGAAGGGGGGGAGAGGG
1 GGGCGGG-AGGGGGGGAG-GGG
*
4450711 GAG-GGG-GGGGGGGAGGGG
1 GGGCGGGAGGGGGGGAGGGG
* * * *
4450729 GCGAGGAAGGGGAGGTGGGGGG
1 GGGCGGGAGGGG-GG-GAGGGG
*
4450751 GGGGGGGAGGGGGGG-GGAGG
1 GGGCGGGAGGGGGGGAGG-GG
*
4450771 TGGGTGGG-GGGGGGGAGGGTG
1 -GGGCGGGAGGGGGGGAGGG-G
*
4450792 AGG-GGGAGGAGGGGGGAGGGAG
1 GGGCGGGA-G-GGGGGGAGGG-G
*
4450814 GGG-GGGGGGGGGGGA-GGG
1 GGGCGGGAGGGGGGGAGGGG
*
4450832 GGACGGG-GGGAGGGGAAGGGG
1 GGGCGGGAGGG-GGGG-AGGGG
* * *
4450853 GAGGCTAGAGCAGAGAGGGAGGGGG
1 G-GGC--G-GGAGGGGGGGA-GGGG
*
4450878 GGGCGGGAGGGGGGGGGGGTAAGG
1 GGGCGGGA-GGGGGGGAGG---GG
*
4450902 GGGCGGGGGGGGGGGTGAAGAGGG
1 GGGC-GGGAGGGGGG-G-AG-GGG
*
4450926 GAGCGGGGAGGGGGGG-GGGG
1 GGGC-GGGAGGGGGGGAGGGG
4450946 GGG-GGG-GGGGGGG-GGGG
1 GGGCGGGAGGGGGGGAGGGG
4450963 GGG-GGG-GGGGGGG-GGGG
1 GGGCGGGAGGGGGGGAGGGG
*
4450980 GGGTTGGG-GGGGGGG-GGGG
1 GGG-CGGGAGGGGGGGAGGGG
4450999 GGG-GGG-GGGGGGG-GGGG
1 GGGCGGGAGGGGGGGAGGGG
4451016 GGG-GGG-GGGGGGG-GGGG
1 GGGCGGGAGGGGGGGAGGGG
*
4451033 GGG-GGGTGGGGGGG-GGGG
1 GGGCGGGAGGGGGGGAGGGG
4451051 GGG-GGG-GGGGGGG-GGGG
1 GGGCGGGAGGGGGGGAGGGG
* * *
4451068 GGGGGGGGGGGGGGGGGGGG
1 GGGCGGGAGGGGGGGAGGGG
* *
4451088 GGGGGGGTGGGGGGG-GGGG
1 GGGCGGGAGGGGGGGAGGGG
*
4451107 GGG-GGGTGGGGGGGAGTGGG
1 GGGCGGGAGGGGGGGAG-GGG
* *
4451127 GGG-GGAGGGGCGGCGGGGGGGG
1 GGGCGG-GAGG-GG-GGGAGGGG
4451149 GGGCGGG-GTGGGGGGAGGGG
1 GGGCGGGAG-GGGGGGAGGGG
*
4451169 GGG-GAGG-GGGGTGGGGGGTGG
1 GGGCG-GGAGGGG-GGGAGG-GG
* *
4451190 GGGCGTGG-GGGGGGGTGGGA
1 GGGCG-GGAGGGGGGGAGGGG
*
4451210 GGG-GGG-GGGGGGCAGGGG
1 GGGCGGGAGGGGGGGAGGGG
* *
4451228 GGAGCGGGAGGTGGGGGTGGTG
1 GG-GCGGGAGG-GGGGGAGGGG
* *
4451250 GGGCGGTAGGGAGGGGTGGGG
1 GGGCGGGAGGG-GGGGAGGGG
4451271 GG
1 GG
4451273 TGGGGTGTGG
Statistics
Matches: 1124, Mismatches: 138, Indels: 320
0.71 0.09 0.20
Matches are distributed among these distances:
17 88 0.08
18 116 0.10
19 165 0.15
20 157 0.14
21 154 0.14
22 174 0.15
23 85 0.08
24 80 0.07
25 35 0.03
26 36 0.03
27 25 0.02
28 9 0.01
ACGTcount: A:0.10, C:0.03, G:0.81, T:0.06
Consensus pattern (20 bp):
GGGCGGGAGGGGGGGAGGGG
Found at i:4449873 original size:21 final size:22
Alignment explanation
Indices: 4449831--4449923 Score: 86
Period size: 21 Copynumber: 4.2 Consensus size: 22
4449821 CTGGGGGGTC
*
4449831 GGGCGGG-GGG-G-GGGCGGGG
1 GGGCGGGAGGGTGAGGGAGGGG
*
4449850 GGGCGGGAGGGTGCGGGAGGGG
1 GGGCGGGAGGGTGAGGGAGGGG
*
4449872 GGGCGGGAGGG-GAGGGAGGGA
1 GGGCGGGAGGGTGAGGGAGGGG
*
4449893 GGGCGGGGGGGTGGAGTGGAGGAGG
1 GGGCGGGAGGGT-GAG-GGAGG-GG
4449918 TGGGCG
1 -GGGCG
4449924 AAGGGAGGGG
Statistics
Matches: 61, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
19 7 0.11
20 3 0.05
21 19 0.31
22 18 0.30
23 3 0.05
24 5 0.08
25 1 0.02
26 5 0.08
ACGTcount: A:0.10, C:0.08, G:0.78, T:0.04
Consensus pattern (22 bp):
GGGCGGGAGGGTGAGGGAGGGG
Found at i:4449879 original size:12 final size:12
Alignment explanation
Indices: 4449823--4449900 Score: 72
Period size: 12 Copynumber: 6.6 Consensus size: 12
4449813 GGGGGAAGCT
* *
4449823 GGGGGGTCGGGC
1 GGGGGGGCGGGA
*
4449835 GGGGGGG-GGGC
1 GGGGGGGCGGGA
4449846 GGGGGGGCGGGA
1 GGGGGGGCGGGA
*
4449858 --GGGTGCGGGA
1 GGGGGGGCGGGA
4449868 GGGGGGGCGGGA
1 GGGGGGGCGGGA
*
4449880 GGGGAGGGAGGGA
1 GGGG-GGGCGGGA
4449893 GGGCGGGG
1 GGG-GGGG
4449901 GGGTGGAGTG
Statistics
Matches: 56, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
10 9 0.16
11 11 0.20
12 22 0.39
13 13 0.23
14 1 0.02
ACGTcount: A:0.08, C:0.09, G:0.81, T:0.03
Consensus pattern (12 bp):
GGGGGGGCGGGA
Found at i:4449994 original size:17 final size:16
Alignment explanation
Indices: 4449972--4450009 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
4449962 GGGGGGGGAA
4449972 GGGGGGGAAAGGGAGC
1 GGGGGGGAAAGGGAGC
*
4449988 GGGGGGGAAAGGGGGC
1 GGGGGGGAAAGGGAGC
4450004 GGGGGG
1 GGGGGG
4450010 TTGGGGAGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.18, C:0.05, G:0.76, T:0.00
Consensus pattern (16 bp):
GGGGGGGAAAGGGAGC
Found at i:4450030 original size:16 final size:15
Alignment explanation
Indices: 4449880--4450112 Score: 50
Period size: 15 Copynumber: 15.8 Consensus size: 15
4449870 GGGGGCGGGA
*
4449880 GGGGAGGGAGGGAG-
1 GGGGAGGGGGGGAGT
4449894 GGCGG-GGGGGTGGAGT
1 GG-GGAGGGGG-GGAGT
*
4449910 GGAGGAGGTGGGCGA--
1 GG-GGAGG-GGGGGAGT
*
4449925 AGGGAGGGGGGG-GT
1 GGGGAGGGGGGGAGT
* * *
4449939 -GTGAGGGGGGGGCGC
1 GGGGA-GGGGGGGAGT
*
4449954 GGGGAGAGGGGG-G-
1 GGGGAGGGGGGGAGT
* **
4449967 GGGAAGGGGGGGAAA
1 GGGGAGGGGGGGAGT
* **
4449982 GGGAGCGGGGGGGAAA
1 GGG-GAGGGGGGGAGT
*
4449998 GGGG-GCGGGGGG-TT
1 GGGGAG-GGGGGGAGT
4450012 GGGGAGGAGGGGGAGT
1 GGGGAGG-GGGGGAGT
* * *
4450028 GGGGGGGTGGGGGCGG
1 GGGGAGG-GGGGGAGT
4450044 GGGGAGGGGGGG-G-
1 GGGGAGGGGGGGAGT
4450057 GGGCG-GGGGGGG-G-
1 GGG-GAGGGGGGGAGT
*
4450070 GGGGATTGAGGGGGAG-
1 GGGGA--GGGGGGGAGT
* *
4450086 GGGG-GGGCGGGGGGG
1 GGGGAGGG-GGGGAGT
4450101 GGGGAGGGGGGG
1 GGGGAGGGGGGG
4450113 GGAAGGGGGA
Statistics
Matches: 169, Mismatches: 25, Indels: 49
0.70 0.10 0.20
Matches are distributed among these distances:
12 1 0.01
13 33 0.20
14 32 0.19
15 49 0.29
16 47 0.28
17 4 0.02
18 3 0.02
ACGTcount: A:0.12, C:0.04, G:0.79, T:0.05
Consensus pattern (15 bp):
GGGGAGGGGGGGAGT
Found at i:4450086 original size:68 final size:64
Alignment explanation
Indices: 4450012--4451316 Score: 426
Period size: 67 Copynumber: 20.3 Consensus size: 64
4450002 GCGGGGGGTT
4450012 GGGGAGGAGGGGGAGTGGGGGGGTGGGGGCGGGGGGAGGGGGGGGGGGCGGGGGGGGGGGGGATT
1 GGGGAGGAGGGGGAGTGGGGGGGTGGGGG-GGGGGG-GGGGGGGGGGG-GGGGGGGGGGGGGA-T
4450077 GAG
62 GAG
* * ** * * * * * *
4450080 GGGGAGG-GGGGG-GCGGGGGGG-GGGGAGGGGGGGGGAAGGGGGAGGGAGCGGTGTGG-TTAG
1 GGGGAGGAGGGGGAGTGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGATGAG
* * * * *
4450140 TGTG-GGTGGGGGTAG-GGGGGGGATGGAGGGAGGGGGGGGGGTGGGGGGGGGGGGGGGGGGA-G
1 GGGGAGGAGGGGG-AGTGGGGGGG-TGG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGATG
*
4450202 GG
63 AG
* * ** * ** * * **
4450204 GGGGAGAGAAGGGGGAG-GGGGGGG-GGAGCTAGTGAGCAGAGGGAAGAGGGGGAGGGCTGGGGG
1 GGGGAG-G-AGGGGGAGTGGGGGGGTGG-G---GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
*
4450267 -TGGG
60 ATGAG
*
4450271 GTGGGA-GAGGT-GAGTGGGGGGGTGGGGGGGGGAGCGAGGGGGGGAGGGGGGGGGGGGTGGGGG
1 G-GGGAGGAGGGGGAGTGGGGGGGT--GGGGGGG-G-G-GGGGGGG-GGGGGGGGGGGG-GGGGG
* *
4450334 GGGTAAG
58 GGATGAG
* * * * * ** * * * * * *
4450341 TGGAAAGTGGGTGGAGCGGGGGTCTAGGGGGGGAAGGGGGGGGGGGGTGGCGTGGAGGGGGGAGG
1 GGGGAGGAGGG-GGAGTGGGGGGGT-GGGGGGG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGATG
4450406 AG
63 AG
* ** * * *
4450408 GGCGGTGTGCTGGGTAG-GGGGGGGAGGAAGGGGGGGGAGGGAGGAGGAGGGGTAGGGGTGGGTG
1 GG-GGAG-GAGGGGGAGTGGGGGGGTGG--GGGGGGGG-GGG-GG-GG-GGGG--GGGG-GGGGG
4450472 GGGGG-T-A-
55 GGGGGATGAG
* * * *
4450479 GGGGTGGTGGGGGAGGGGGGGGGGTGGGGGGGGGAGGGGGGGGGGGGGCGGGGTGGTGGGGGGA-
1 GGGGAGGAGGGGGA-GTGGGGGGGTGGGGGGGGG-GGGGGGGGGGGGG-GGGG-GGGGGGGGGAT
4450543 G-G
62 GAG
* * *
4450545 GGGGGGGAGTGGGGTAG-GATGGTGGGTGGGAGGGGGGGGGGTGGGTGGGGGGGAGTGGGGGGGG
1 GGGGAGGAG-GGGG-AGTG--GGGGGGTGGG-GGGGGGGGGG-GGG-GGGGGGG-GGGGGGGGGG
4450609 GGAGTG-G
58 GGA-TGAG
* * ** *
4450616 GGTTGAGG-GGCGGG-GTGGGGGGGAGGGGGGGAAGGGGGGGGGGGGGTGGGGGGGGGGGG-TG-
1 GG-GGAGGAGG-GGGAGTGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGATGA
4450677 G
64 G
* * * * * * * *
4450678 GGGGGGGAGGGGG-G-GGGGAAGG-GGGGGAGAGGGGAGGGGGGGGGGGAGGGGGCGAGGA--A-
1 GGGGAGGAGGGGGAGTGGGG-GGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGATGAG
* * * * * *
4450737 GGGGA-G-GTGGG-G-G-GGGGG-GGGAGGGGGGGGGAGGTGGGTGGGGGGGGGGAGGG-TGAG
1 GGGGAGGAGGGGGAGTGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGATGAG
** *
4450794 GGGGAGGAGGGGGGAG-GGAGGGGG-GGGGGGGGGGAGGGGGACGGGGGGAGGGGAAGGGGGAGG
1 GGGGAGGA-GGGGGAGTGG-GGGGGTGGGGGGGGGG-GGGGG--GGGGGG-GGGGGGGGGGGGGG
*
4450857 CTAGAG
60 AT-GAG
* * * * * *** * * *
4450863 CAGAGAGG-GAGGG-G-GGGGCGG-GAGGGGGGGGGGGTAAGGGGGCGGGGGGGGGGGTGAAGA-
1 -GGGGAGGAGGGGGAGTGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGATGAG
*
4450923 GGGGA-G-CGGGGAG-GGGGGGG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG--G-G
1 GGGGAGGAGGGGGAGTGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGATGAG
** * ** *
4450980 GGGTTGG-GGGGG-G-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTG
1 GGGGAGGAGGGGGAGTGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGATGAG
4451041 GGGG-GG-GGGGG-G-GGGGGGG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-TG-G
1 GGGGAGGAGGGGGAGTGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGATGAG
* * *
4451098 GGGGGGGGGGGGGGGTGGGGGGGAGTGGGGGGGGAGGGGCGGCGGGGGGGGGGGCGGGGTGGGGG
1 GGGGAGGAGGGGGAGT-GGGGGG-GTGGGGGGGG-GGGG-GG-GGGGGGGGGGG-GGGG-GGGGG
4451163 GA-G-G
59 GATGAG
4451167 GGGG-GGAGGGGG-GT-GGGGGGTGGGGGCGTGGGGGGGGGTGGGAGGGGGGGGGGGGCAGGGGG
1 GGGGAGGAGGGGGAGTGGGGGGGTGGGGG-G-GGGGGGGGG-GGG-GGGGGGGGGGGG--GGGGG
4451229 --GAG
60 ATGAG
* * * * * * * * * * * *
4451232 CGGGAGGTGGGGGTGGTGGGGCGGTAGGGAGGGGTGGGGGGTGGGGTGTGGTGGGGGGGAGCTG-
1 GGGGAGGAGGGGG-AGTGGGGGGGT-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGATGA
4451296 G
64 G
* *
4451297 GGGGGGGAGGGGGTGTGGGG
1 GGGGAGGAGGGGGAGTGGGG
4451317 AGCGGGGGGG
Statistics
Matches: 942, Mismatches: 181, Indels: 232
0.70 0.13 0.17
Matches are distributed among these distances:
55 26 0.03
56 3 0.00
57 28 0.03
58 49 0.05
59 85 0.09
60 63 0.07
61 24 0.03
62 32 0.03
63 32 0.03
64 93 0.10
65 78 0.08
66 74 0.08
67 98 0.10
68 93 0.10
69 77 0.08
70 33 0.04
71 30 0.03
72 13 0.01
73 3 0.00
74 8 0.01
ACGTcount: A:0.10, C:0.02, G:0.81, T:0.07
Consensus pattern (64 bp):
GGGGAGGAGGGGGAGTGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGATGAG
Found at i:4450121 original size:1 final size:1
Alignment explanation
Indices: 4450028--4450114 Score: 75
Period size: 1 Copynumber: 87.0 Consensus size: 1
4450018 GAGGGGGAGT
* * * * *** * *
4450028 GGGGGGGTGGGGGCGGGGGGAGGGGGGGGGGGCGGGGGGGGGGGGGATTGAGGGGGAGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* *
4450093 CGGGGGGGGGGGAGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGG
4450115 AAGGGGGAGG
Statistics
Matches: 67, Mismatches: 19, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 67 1.00
ACGTcount: A:0.06, C:0.03, G:0.87, T:0.03
Consensus pattern (1 bp):
G
Found at i:4450121 original size:49 final size:49
Alignment explanation
Indices: 4449997--4451231 Score: 266
Period size: 47 Copynumber: 24.6 Consensus size: 49
4449987 CGGGGGGGAA
* * *
4449997 AGGGGGCGGGGGGTTGGGGAGGA-GGGGGAGTGGGGGGGTGGGGGCGGGGGG
1 AGGGGG-GGGGGG-CGGGG-GGAGGGGGGAGTGAGGGGGAGGGGGCGGGGGG
* *
4450048 AGGGGGGGGGGGCGGGGGGGGGGGGGATTGAGGGGGAGGGGG-GGGCGGG
1 AGGGGGGGGGGGCGGGGGGAGGGGGGAGTGAGGGGGAGGGGGCGGG-GGG
* * * *
4450097 -GGGGGGGGAGGG-GGGGGGAAGGGGGAGGGAGCGGTGTGGTTAGTGTGGGTGGGGGT
1 AGGGGGGGG-GGGCGGGGGGAGGGGGGAGTGA--GG-G-GG--AG-G-GGGCGGGGGG
* * *
4450153 AGGGGGGGGATGGAGGGAGGG-GGGGGG-GTG-GGGGG-GGGGGGGGGGGG
1 AGGGGGGGG-GGGCGGG-GGGAGGGGGGAGTGAGGGGGAGGGGGCGGGGGG
* * * **
4450200 AGGGGGGGAGAGAAGG-GGGAGGGGGGGGGGAGCT-AGTGAGCAGAGGGAAGAGGGGG
1 AGGGGGGG-G-G--GGCGGG-GGGAGGGGGGAG-TGAG-GGGGAG-GGGGCG-GGGGG
* * * * * *
4450256 AGGGCTGGGGGTGG-GGTGGGAGAGGTGAGTGGGGGGGTGGGGG-GGGGAGCG
1 AGGG--GGGGGGGGCGGGGGGAGGGGGGAGTGAGGGGGAGGGGGCGGGG-G-G
* * * * *
4450307 AGGGGGGGAGGGGGGGGGGGGTGGGGGGGGTAAGTGGAAAGTG-GGTGGAGCGGGGGTCT
1 A-GGGGGG-GGGGGCGGGGGGAGGGGGGAGTGAG-GG---G-GAGG-GG-GCGGGGG--G
* * *
4450366 AGGGGGGGAAGGG-GGGGGG-GGGTGGCGTGGAGGGGGGAGGAGGGCGGTGTGCTGGG
1 AGGGGGGG-GGGGCGGGGGGAGGGGGGAGT-GA-GGGGGAGG-GGGC-G-G-G--GGG
* * * *
4450422 TAGGGGGGGGAGGAAGGGGGGGGAGGGAGGAG-GAGGGGTAGGGGTGGGTGGGGGG
1 -AGGGGGGGG-GG--GCGGGGGGAGGGGGGAGTGAGGGG--GAGG-GGGCGGGGGG
*
4450477 TAGGGGTGGTGGGGGAGGGGGG-GGGGTGG-G-G-GGGGGA-GGGG-GGGGGG
1 -AGGGG-GG-GGGGGCGGGGGGAGGGG-GGAGTGAGGGGGAGGGGGCGGGGGG
* * * * * *
4450524 -GGGCGGGGTGGTGGGGGGAGGGGGG-GGGAGTGGGGTAGGATGGTGGGTGGG
1 AGGGGGGGGGGGCGGGGGGAGGGGGGAGTGAG-GGGG-AGG-GGGCGGG-GGG
* * * *
4450575 A-GGGGGGGGGG-TGGGTG-GGGGGGAGTG-GGGGG-GGGGAGTGGGGTTG
1 AGGGGGGGGGGGCGGGGGGAGGGGGGAGTGAGGGGGAGGGG-GCGGGG-GG
* * *
4450621 AGGGGCGGGGTG-GGGGGGAGGGGGG-G-AAGGGGG-GGGGG-GGGTGGG
1 AGGGGGGGGGGGCGGGGGGAGGGGGGAGTGAGGGGGAGGGGGCGGG-GGG
* * * *
4450666 -GGGGGGGGGTGGGGGGGGGAGGGGGG-G-G-GGAAGG-GGGGGAGAGGGG
1 AGGGGGGGGG-GGCGGGGGGAGGGGGGAGTGAGG-GGGAGGGGGCGGGGGG
* ** *
4450712 AGGGGGGGGGGGAGGGGGCGAGGAAGG-G-GAGGTGG-GGGGG-GGGGGG
1 AGGGGGGGGGGGCGGGGG-GAGGGGGGAGTGAGGGGGAGGGGGCGGGGGG
* *
4450758 AGGGGGGGGGAGGTGGGTGGGGGGGGGGAGGGTGAGGGGGAGGAGGG-GGGAGGG
1 AGGGGGGGGG-GGCGGG-GGGAGGGGGGA--GTGAGGGGGAGG-GGGCGGG-GGG
* * ** * ** *
4450812 AGGGGGGGGGGGGGGGAGGGGGACGGGGGGAGGGGAAGGGGGAGGCTAGAGCAGAG
1 A--GGGGGGGGGGGCG-GGGGGA-GGGGGGA-GTG-AGGGGGAGG-GGGCGGGGGG
* * * *
4450868 AGGGAGGGGGGGGCGGGAGGG-GGGGGGGGTAAGGGGGCGGGGGGGGGGGTG
1 AGGG-GGGGGGGGCGGG-GGGAGGGGGGAGTGAGGGGGAGGGGGCGGGGG-G
* *
4450919 AAGAGGGGAGCGGGGAGGGGGG-GGGGGG-G-G-GGGGG-GGGGG-GGGGGG
1 -AG-GGGG-GGGGGGCGGGGGGAGGGGGGAGTGAGGGGGAGGGGGCGGGGGG
* * * *
4450965 -GGGGGGGGGGGGGGGGGGTTGGGGGG-G-G-GGGGGGGGGGGGGGGGGG
1 AGGGGGGGGGGGCGGGGGG-AGGGGGGAGTGAGGGGGAGGGGGCGGGGGG
* * * *
4451011 GGGGGGGGGGGGGGGGGGGGGGGGGGGGTG-GGGGG-GGGGG-GGGGGG
1 AGGGGGGGGGGGCGGGGGGAGGGGGGAGTGAGGGGGAGGGGGCGGGGGG
* * * *
4451057 -GGGGGGGGGGG-GGGGGG-GGGGGG-GGGGGGGGGGGGGGGTGGGGGG
1 AGGGGGGGGGGGCGGGGGGAGGGGGGAGTGAGGGGGAGGGGGCGGGGGG
* * *
4451102 -GGGGGGGGGGGTGGGGGGGAGTGGGGG-GGGAGGGGCG-GCGGGGGGGGGGG
1 AGGGGGGGGGGG-CGGGGGGAG-GGGGGAGTGAGGGG-GAG-GGGGCGGGGGG
* * *
4451152 CGGGGTGGGGGGAGGGGGGGGA-GGGGG-GTG-GGGGGTGGGGGCGTGGGGG
1 AGGGG-GGGGGG-GCGGGGGGAGGGGGGAGTGAGGGGGAGGGGGCG-GGGGG
* *
4451201 GGGGTGGGAGGGGGGGGGGGGCAGGGGGGAG
1 AGGG-GGG-GGGGGCGGGGGG-AGGGGGGAG
4451232 CGGGAGGTGG
Statistics
Matches: 932, Mismatches: 118, Indels: 267
0.71 0.09 0.20
Matches are distributed among these distances:
42 13 0.01
43 28 0.03
44 40 0.04
45 46 0.05
46 80 0.09
47 116 0.12
48 66 0.07
49 90 0.10
50 59 0.06
51 53 0.06
52 60 0.06
53 46 0.05
54 33 0.04
55 36 0.04
56 60 0.06
57 44 0.05
58 31 0.03
59 13 0.01
60 12 0.01
61 6 0.01
ACGTcount: A:0.10, C:0.02, G:0.82, T:0.06
Consensus pattern (49 bp):
AGGGGGGGGGGGCGGGGGGAGGGGGGAGTGAGGGGGAGGGGGCGGGGGG
Found at i:4450218 original size:30 final size:28
Alignment explanation
Indices: 4449831--4451365 Score: 455
Period size: 28 Copynumber: 52.7 Consensus size: 28
4449821 CTGGGGGGTC
4449831 GGGCGGGGGGGGGGCG-GGGGGGCGGGAGG
1 GGGCGGGGGGGGGG-GAGGGGGG-GGGAGG
*
4449860 GTGCGGGAGGGGGGGCG-GGAGGGGAGGGAGGG
1 GGGCGGG-GGGGGGG-GAGG-GGGG-GGGA-GG
*
4449892 AGGGCGGGGGGGTGGAGTGGAGGAGGTGGGCGAAGG
1 -GGGC-GGGGGG-GG-G-GGAGG-GG-GGG-GGAGG
* * * *
4449928 GAG-GGGGGGGTGTGAGGGGGGGGCGCGG
1 GGGCGGGGGGGGGGGAGGGGGGGG-GAGG
* * **
4449956 GGAG-AGGGGGGGGGAAGGGGGGGAAAGG
1 GG-GCGGGGGGGGGGGAGGGGGGGGGAGG
* **
4449984 GAGC--GGGGGGGAAAGGGGGCGGGG-GG
1 GGGCGGGGGGGGGGGAGGGGG-GGGGAGG
* * * * *
4450010 TTGG-GGAGGAGGGGGAGTGGGGGGGTGG
1 -GGGCGGGGGGGGGGGAGGGGGGGGGAGG
* *
4450038 GGGCGGGGGGAGGGG-GGGGGGGCG-GG
1 GGGCGGGGGGGGGGGAGGGGGGGGGAGG
*** *
4450064 GGG-GGGGGGGATTGAGGGGGAGGG-GG
1 GGGCGGGGGGGGGGGAGGGGGGGGGAGG
4450090 GGGCGGGGGGGGGGGAGGGGGGGGGAAGG
1 GGGCGGGGGGGGGGGAGGGGGGGGG-AGG
* * *
4450119 GGGAGGGAGCGGTGTGGTTAGTGTGGGTGGGGGTAGG
1 GGGCGGG-G-GG-G-GG---G-GAGGG-GGGGGGAGG
** * *
4450156 GGG-GGGATGGAGGGAGGGGGGGGGGTGGG
1 GGGCGGGGGGGGGGGA-GGGGGGGGG-AGG
*
4450185 GGGGGGGGGGGGGGGAGGGGGGGAGAGAAGG
1 GGGCGGGGGGGGGGGAGGGGGGG-G-G-AGG
* *
4450216 GGGAGGGGGGGGGGAGCTAGTGAGCAGAGGGAAGAGG
1 GGGCGGGGGGGGGG-G--AG-G-G--G-GGG-GGAGG
* *
4450253 GGGAGGGCTGGGGGTGGG-GTGGGAGAGGTGAGTG
1 GGGCGGG--GGGGG-GGGAG-GGG-G-GGGGAG-G
*
4450287 GGGGGGTGGGGGGGGGAGCGAGGGGGGGAGG
1 GGGCGG-GGGGGGGGGAG-G-GGGGGGGAGG
** *
4450318 GGG-GGGGGGGTGGGG-GGGGTAAGTGGAAAGT
1 GGGCGGGGGGG-GGGGAGGGG---G-GGGGAGG
* *** *
4450349 GGGTGGAGCGGGGGTCTA-GGGGGGGAAGG
1 GGGCGG-G-GGGGGGGGAGGGGGGGGGAGG
* * *
4450378 GGG-GGGGGGGTGGCGTGGAGGGGGGAGG
1 GGGCGGGGGGG-GGGGAGGGGGGGGGAGG
* ** *
4450406 AGGGCGGTGTGCTGGGTA-GGGGGGGGAGG
1 -GGGCGG-GGGGGGGGGAGGGGGGGGGAGG
** * *
4450435 AAG-GGGGGGGAGGGAGGAGGAGGGGTA-G
1 GGGCGGGGGGGGGGGAGG-GG-GGGGGAGG
* * * * *
4450463 GGGTGGGTGGGGGGTA--GGGGTGGTGG
1 GGGCGGGGGGGGGGGAGGGGGGGGGAGG
* *
4450489 GGG-AGGGGGGGGGGTGGGGGGGGGAGG
1 GGGCGGGGGGGGGGGAGGGGGGGGGAGG
* * *
4450516 GGGGGGGGGGGCGGGGTGGTGGGGGGAGG
1 GGGCGGGGGGG-GGGGAGGGGGGGGGAGG
* * * * *
4450545 GGG-GGGGAGTGGGGTAGGATGGTGGGTGG
1 GGGCGGGG-GGGGGGGAGG-GGGGGGGAGG
* *
4450574 GAGG-GGGGGGGGTGG-GTGGGGGGGAGTG
1 G-GGCGGGGGGGGGGGAGGGGGGGGGAG-G
* * *
4450602 GGGGGGGGGAGTGGGGTTGAGGGGCGGGGTGG
1 GGGCGGGGG-G-GGGG--GAGGGGGGGGGAGG
* *
4450634 GGG-GGAGGGGGGGAAGGGGGGGGG-GG
1 GGGCGGGGGGGGGGGAGGGGGGGGGAGG
*
4450660 GGTG-GGGGGGGGGGGTGGGGGGGGGAGG
1 GG-GCGGGGGGGGGGGAGGGGGGGGGAGG
* * *
4450688 GGG-GGGGGAAGGGGG-GGAGAGGGGAGG
1 GGGCGGGGG-GGGGGGAGGGGGGGGGAGG
* **
4450715 GGG-GGGGGGAGGGGGCGAGGAAGGGGAGG
1 GGGCGGGGGG-GGGGGAG-GGGGGGGGAGG
*
4450744 TGG-GGGGGGGGGGGAGGGGGGGGGAGG
1 GGGCGGGGGGGGGGGAGGGGGGGGGAGG
*
4450771 TGGG-TGGGGGGGGGGAGGGTGAGGGGGAGG
1 -GGGCGGGGGGGGGGGAGGG-G-GGGGGAGG
*
4450801 AGGG-GGGAGGGAGGGGGGGGGGGGGGGAGG
1 -GGGCGGG-GGG-GGGGGAGGGGGGGGGAGG
*
4450831 GGGACGGGGGGAGGGGAAGGGGGAGGCTAGAGCAGAG
1 GGG-CGGGGGG-GGGGGAGGGGG-GG---G-G-AG-G
*
4450868 AGGGAGGGGGGGGCGGGAGGGGGGGGGGGTAAGG
1 -GGGCGGGGGGGG-GGGA--GGGGGGGGG--AGG
* ** *
4450902 GGGCGGGGGGGGGGGTGAAGAGGGGAGCG
1 GGGCGGGGGGGGGGGAGGGGGGGGGAG-G
* *
4450931 GGGAGGGGGGGGGGG-GGGGGGGGGGGG
1 GGGCGGGGGGGGGGGAGGGGGGGGGAGG
* * *
4450958 GGGGGGGGGGGGGGGGGGGGGGGGGTTGG
1 GGGCGGGGGGGGGGGAGGGGGGGGG-AGG
* *
4450987 GGG-GGGGGGGGGGGGGGGGGGGGGGGG
1 GGGCGGGGGGGGGGGAGGGGGGGGGAGG
* * *
4451014 GGGGGGGGGGGGGGGGGGGGGGGGGTGG
1 GGGCGGGGGGGGGGGAGGGGGGGGGAGG
4451042 GGG-GGGGGGGGGGG-GGGGGGGGG-GG
1 GGGCGGGGGGGGGGGAGGGGGGGGGAGG
4451067 GGG-GGGGGGGGGGG-GGGGGGGGG-GG
1 GGGCGGGGGGGGGGGAGGGGGGGGGAGG
*
4451092 GGGTGGGGGGGGGGG-GGGGGGTGGG-GG
1 GGGCGGGGGGGGGGGAGGGGGG-GGGAGG
*
4451119 GGAGTGGGGGGGGAGGG-GCGGCGGGGGG-GG
1 GG-GCGGGGGGGG-GGGAG-GG-GGGGGGAGG
*
4451149 GGGCGGGGTGGGGGGA-GGGGGGGGAGGG
1 GGGCGGGGGGGGGGGAGGGGGGGGGA-GG
* * *
4451177 GGGTGGGGGGTGGGGGCGTGGGGGGGG-GT
1 GGGCGGGGGG-GGGGGAG-GGGGGGGGAGG
* ** *
4451206 GGGAGGGGGGGGGGG-GCAGGGGGGAGC
1 GGGCGGGGGGGGGGGAGGGGGGGGGAGG
* * * *
4451233 GGGAGGTGGGGGTGGTGGGGCGGTAGGGA-G
1 GGGCGGGGGGGGGGGAGGGG-GG--GGGAGG
* * * * *
4451263 GGGTGGGGGGTGGGGTGTGGTGGGG-GG
1 GGGCGGGGGGGGGGGAGGGGGGGGGAGG
* * * *
4451290 GAGC-TGGGGGGGGGAGGGGGTGTG-GG
1 GGGCGGGGGGGGGGGAGGGGGGGGGAGG
* * **
4451316 GAGCGGGGGGGAGGGAAGGGTGGGGGCTGG
1 GGGCGGGGGGG-GGGGAGGG-GGGGGGAGG
4451346 GGG-GGGTGGGGAGGGGAGGG
1 GGGCGGG-GGGG-GGGGAGGG
4451366 TGTGGGGGGG
Statistics
Matches: 1166, Mismatches: 201, Indels: 277
0.71 0.12 0.17
Matches are distributed among these distances:
25 48 0.04
26 109 0.09
27 194 0.17
28 209 0.18
29 205 0.18
30 128 0.11
31 68 0.06
32 32 0.03
33 53 0.05
34 25 0.02
35 11 0.01
36 21 0.02
37 34 0.03
38 12 0.01
39 15 0.01
40 2 0.00
ACGTcount: A:0.10, C:0.03, G:0.81, T:0.06
Consensus pattern (28 bp):
GGGCGGGGGGGGGGGAGGGGGGGGGAGG
Found at i:4450227 original size:1 final size:1
Alignment explanation
Indices: 4450171--4450207 Score: 56
Period size: 1 Copynumber: 37.0 Consensus size: 1
4450161 GATGGAGGGA
* *
4450171 GGGGGGGGGGTGGGGGGGGGGGGGGGGGGAGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
4450208 AGAGAAGGGG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
1 32 1.00
ACGTcount: A:0.03, C:0.00, G:0.95, T:0.03
Consensus pattern (1 bp):
G
Found at i:4451202 original size:309 final size:300
Alignment explanation
Indices: 4450622--4451376 Score: 746
Period size: 305 Copynumber: 2.4 Consensus size: 300
4450612 GTGGGGTTGA
4450622 GGGGCGGGGTGGGGGGGAGGGGGGGAAGGGGGGGGGGGGGTGGGGGGGGGGGGTGGGGGGGGGAG
1 GGGG-GGGG-GGGG-GGAGGGGGGG-AGGGGGGGGGGGGGTGGGGGGGGGGGGTGGGGGGGGGAG
* * * * * *
4450687 GGGGGGGGGAAGGGGGGGAGAGGGGAGGGGGGGGGGGAGGGGGCGAGGAAGGGGAGGTGGGGGGG
62 GGGGGGGGG-AGGGGGGGGGAGGGGAGGGGGGGGGGGGGGGGGGGTGG--GGGGGGGAGGGGGGG
* * *
4450752 GGGGGGAGGGGGGGGGAGGTGGGTGGGGGGGGGGAGGGTGAGGGGGAGGAGGGGGGAGGGAGGGG
124 GGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGAGGGTGAGGGGGAGGAGGGGGGAGGGAGGGG
* *
4450817 GGGGGGGGGGGAGGGGGACGGGGGGAGGGGAAGGGGGAGGCTAGAGCAGAGAGGGAGGGGGGGGC
189 AGGGGGGGGGGAGGGGGACGGGGGGAGGGGAAGGGGGAGGCGAGAGCAGAGAGGGAGGGGGGGGC
*
4450882 GGGAGGGGGGGGGGGTAAGGGGGCGGGGGGGGGGGTGAAGAGGGGAGCGGGGAG
254 GGGA-GGGGGGGGGGT----GGGAGGGGGGGGGGG-GAAGAGGGGAGC-GGGAG
*
4450936 GGGGGGGGGGGGGG-GGGGGGG-GGGGGGGGGGGGGGGGGGGGGGGGGGTTGGGGGGGGG-GGGG
1 GGGGGGGGGGGGGGAGGGGGGGAGGGGGGGGGGGGGTGGGGGGGGGGGG-TGGGGGGGGGAGGGG
* * * *
4450998 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGG
65 GGGGGGAGGGGGGGGGAGGGGAGGGGGGGGGGGGGGGGGGGTGGGGGGGGGAGGGGGGGGGGGGG
* * * * * * *
4451063 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGTGGG-GGGGAGTGGG
130 GGGGGGGGGGAGGGGGGGGGGGGGGGGGAGGGTGAGGGGGAGGAGGGGGGAGGGAGGGGAGGGGG
* ** * * * ** * * *
4451127 GGGGGAGGGGCGGCGGGGGG-GGGGGCGGGGTGGGGGGAGGGGGGGGAGGGGGGTGGGGGGTGGG
195 GGGGGAGGGG-GACGGGGGGAGGGGAAGGGG-GAGGCGAGAGCAGAGA-GGGAG-GGGGGG-GCG
* * *
4451191 GGCGTGGGGGGGGGTGGGAGGGGGGGGGGGGCAGGGGGGAGCGGGAG
255 GGAG-GGGGGGGGGTGGGAGGGGGGGGGGGGAAGAGGGGAGCGGGAG
* * * * *
4451238 GTGGGGGTGGTGGGGCGGTAGGGAGGGGTGGGGGGTGGGGTGTGGTGGGGGGGAGCTGGGGGGGG
1 G-GGGGG-GG-GGGG-GG-AGGG-GGGGAGGGGGGGGGGGGGTGG-GGGGGGGGGGTGGGGGGGG
* * * ** * *
4451303 GAGGGGGTGTGGGGAGCGGGGGGGAGGGAAGGGTGGGGGCTGGGGGGGGTGGGGAGGGGAGGGTG
59 GAGGGGG-G-GGGGAGGGGGGGGGAGGGGAGGGGGGGGGGGGGGGGGGGTGGGGGGGGGAGGGGG
*
4451368 TGGGGGGGG
122 GGGGGGGGG
4451377 TGGGATTGCA
Statistics
Matches: 368, Mismatches: 54, Indels: 39
0.80 0.12 0.08
Matches are distributed among these distances:
302 6 0.02
303 15 0.04
304 42 0.11
305 85 0.23
306 6 0.02
307 38 0.10
308 52 0.14
309 14 0.04
310 30 0.08
311 15 0.04
312 5 0.01
313 56 0.15
314 4 0.01
ACGTcount: A:0.08, C:0.02, G:0.85, T:0.05
Consensus pattern (300 bp):
GGGGGGGGGGGGGGAGGGGGGGAGGGGGGGGGGGGGTGGGGGGGGGGGGTGGGGGGGGGAGGGGG
GGGGGAGGGGGGGGGAGGGGAGGGGGGGGGGGGGGGGGGGTGGGGGGGGGAGGGGGGGGGGGGGG
GGGGGGGGGAGGGGGGGGGGGGGGGGGAGGGTGAGGGGGAGGAGGGGGGAGGGAGGGGAGGGGGG
GGGGAGGGGGACGGGGGGAGGGGAAGGGGGAGGCGAGAGCAGAGAGGGAGGGGGGGGCGGGAGGG
GGGGGGGTGGGAGGGGGGGGGGGGAAGAGGGGAGCGGGAG
Found at i:4451219 original size:56 final size:51
Alignment explanation
Indices: 4449756--4451381 Score: 539
Period size: 52 Copynumber: 30.0 Consensus size: 51
4449746 GTGTGCGGGT
* * * * *
4449756 GGGGGGAGAGGAGGGGGGGGGGGGGGGGGGTGGGAGGAGTGGAGGGTGAGG-GG
1 GGGGGGGGAGG-GGGGGGGGGGGGGGGGGG-GGGGGGGGGGGGGGGTG-GGAGG
* * *
4449809 TGCGGGGGGAAGCTGGGGGGTCGGGCGGGGGGGGGGCGGGGGGGCGGGAGGGTGCGGGAGG
1 -G-GGGGGGGAG--GGGGGG--GGG-GGGGGGGGGG-GGGGGGG-GGG-GGGGGTGGGAGG
* **
4449870 GGGGGCGGGAGGGGAGGGAGGGAGGGCGGGGGGGTGGAGTGGAGGAGGTGGGCGAAGGGAGG
1 GGGGG-GGGAGGGG-GGG-GGG-GGG-GGGGGGG-GG-G-GG-GG-GG-GGGGGGTGGGAGG
* ** ***
4449932 GGGGGGTGTGAGGGGGGGGCGCGGGGAGAGGGGGGGGGAAGGGGGGGAAAGGGAGCG
1 GGGGGG-G-GAGGGGGGGG-G-GGGG-GGGGGGGGGGGGGGGGGGGGGGTGGGAG-G
** * * * * *
4449989 GGGGGGAAAGGGGGCGGGGGGTTGGGGAGGAGGGGGAGTGGGGGGGT-GG-GG
1 GGGGGGGGAGGGGG-GGGGGG-GGGGGGGGGGGGGGGGGGGGGGGGTGGGAGG
* * *** * *
4450040 GCGGGGGGAGGGGGGGGGGGCGGGGGGGGGGGGGATTGAGGGGGAGGG-GG
1 GGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGAGG
* * ** * * * * *
4450090 GGGCGGGG-GGGGGGGAGGGGGGGGGAAGGGGGAGGGAGCGGTGTGGTTAGTG
1 GGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGG-GAG-G
** * * *
4450142 TGGGTGGGGGTA--GGGGGGGGATGGAGGGAGGGGGGGGGGTGGGGG-GGG-GG
1 -GGG-GGGGG-AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGAGG
** * * *** * * *
4450192 GGGGGGGGAGGGGGGGAGAGAAGGGGGAGGGGGGGGGGAGCTAGTGAGCAGAGG
1 GGGGGGGGAGGGGGGG-G-GGGGGGGGGGGGGGGGGGGGGGGGGGGTG-GGAGG
* * *
4450246 GAAGAGGGGGAGGGCTGGGGGTGGGGTGGGAGAGGTGAGTGGGGGGGTGGGGGG-GGGAGCG
1 G--GGGGGGGAGGG--GGGGG-GGGG-GGG-G-GG-G-GGGGGGGGGGGGGGGGTGGGAG-G
* *** * *** * *
4450307 AGGGGGGGAGGGGGGGGGGGGTGGGGGGGGTAAGTGGAAAGTGGGT-GGAGC
1 GGGGGGGGAGGGGGGGGGGGG-GGGGGGGGGGGGGGGGGGGGGGGTGGGAGG
*** * * * * * *
4450358 GGGGGTCTAGGGGGGGAAGGGGGGGGGGGGTGGCGTGGAGGGGGG-AGGAGG
1 GGGGGGGGAGGGGGGG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGAGG
** * * * *
4450409 GCGGTGTGCTGGGTAGGGGGGGGAGGAAGGGGGGGGAGGGAGGAGGAGGGGTAGGG-GTG
1 G-GG-G-G--GGG-AGGGGGGGG-GGGGGGGGGGGGGGGGGGGGGGGGGGGT-GGGAG-G
4450468 GGTGGGGGGTAGGGGTGGTGGGGGAGGGGGGGGGGTGGGGGGGGGAGGGGG-GGG-GG
1 GG-GGGGGG-AGGGG-GG-GGGGG-GGGGGGGGGG-GGGGGGGGG-GGGGGTGGGAGG
* * * ** ** *
4450524 GGGCGGGGTGGTGGGGGGAGGGGGGGGGAGTGGGGTAGGATGGTGGGTGGGAGG
1 GGGGGGGGAGG-GGGGGG-GGGGGGGGG-GGGGGGGGGGGGGGGGGGTGGGAGG
* *
4450578 GGGGGGGGTGGGTGGGGGGGAGTGGGGGGGGGGAGTGGGGTTGAGGGGCGGGGTGGGGGG
1 GGGGGGGGAGGG-GGGGGGG-G-GGGGGGGGGG-G-GGGG--G-GGGG-GGGGTGGGAGG
* * *
4450638 GAGGGGGGGA-AGGGGGGGGGGGGGTGGGGGGGGGGGGTGGGGGG-GGGAGG
1 G-GGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGAGG
* * * * * * * *
4450688 GGGGGGGGAAGGGGGGGAGAGGGGAGGGGGGGGGGGAGGGGGCGAGGAAGG
1 GGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGAGG
* *
4450739 GGAGGTGGGGGGGGGGGGGAGGGGGGGGGAGGTGGGTGGGGGGGGGGAGGGTGAGGGGG
1 GG-GG-GGGGAGGGGGGGG-GGGGGGGGG-GG-GGG-GGGGGGGGGG-GGGTG-GGAGG
* ** * *
4450798 AGGAGGGGGGAGGGAGGGGGGGGGGGGGGGAGGGGGACGGGGGGAGG-GGAAGG
1 -GG-GGGGGGAGGG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGAGG
* *** *
4450851 GGGAGGCTAGAGCAGAGAGGGAGGGGGGGGCGGGAGGGGGGGGGGGTAAGGGGGCGGG-GG
1 GGG-GG---G-G--GAG-GGGGGGGGGGGG-GGG-GGGGGGGGGGGGGGGGGGGTGGGAGG
4450911 GGGGGGTGAAGAGGGGAGCGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGG-GGG-GG
1 GGGGGG-G--GAGGGG-G-GGGG-GGGGGGGGGGGGGGGGGGGGGGGGGGTGGGAGG
* * *
4450966 GGGGGGGGGGGGGGGGGTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGAGGGGGGGG--GGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGAGG
* * *
4451019 GGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGAGGGGGGGGGGG-GGGGGGGGGGGGGGGGGGGGGGGGTGGGAGG
* * *
4451071 GGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGTGGGGGGGAGT
1 GGGGGGGGAGGGGGGGGGGGGGGG-GGGGGGGGGGGGGGGGG-GGGTGGGAGG
* * *
4451124 GGGGGGGGAGGGGCGGCGGGGGGGGGGGCGGGGTGGGGGGAGGGGG-GGGAGG
1 GGGGGGGGAGGGG-GG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGAGG
* * * * * *
4451176 GGGGTGGGG-GGTGGGGGCGTGGGGGGGGGTGGGAGGGGGGGGGG-GGCAGG
1 GGGG-GGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGAGG
* * * ** * * *
4451226 GGGGAGCGGGAGGTGGGGGTGGTGGGGCGGTAGGGAGGGGTGGGGGGTGGGGTGTG
1 GGGG-G-GGGAGG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT-GGGAG-G
** * * * * * * *
4451282 GTGGGGGGGAGCTGGGGGGGGGAGGGGGTGTGGGGAGCGGGGGGGAGGGAAG
1 G-GGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGAGG
* ** * * * * *
4451334 GGTGGGGG-CTGGGGGGGGTGGGGAGGGGAGGGTGTGGGGGGGGTGGGA
1 GGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGA
4451382 TTGCAGGGGG
Statistics
Matches: 1187, Mismatches: 260, Indels: 254
0.70 0.15 0.15
Matches are distributed among these distances:
47 1 0.00
48 5 0.00
49 60 0.05
50 113 0.10
51 120 0.10
52 128 0.11
53 116 0.10
54 128 0.11
55 79 0.07
56 83 0.07
57 90 0.08
58 52 0.04
59 87 0.07
60 53 0.04
61 24 0.02
62 40 0.03
63 8 0.01
ACGTcount: A:0.10, C:0.03, G:0.80, T:0.07
Consensus pattern (51 bp):
GGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGAGG
Found at i:4451229 original size:1 final size:1
Alignment explanation
Indices: 4450487--4451221 Score: 525
Period size: 1 Copynumber: 735.0 Consensus size: 1
4450477 TAGGGGTGGT
* * * * * * *
4450487 GGGGGAGGGGGGGGGGTGGGGGGGGGAGGGGGGGGGGGGGCGGGGTGGTGGGGGGAGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * ** ** * * * * * * * * *
4450552 AGTGGGGTAGGATGGTGGGTGGGAGGGGGGGGGGTGGGTGGGGGGGAGTGGGGGGGGGGAGTGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
** * * * * ** * *
4450617 GTTGAGGGGCGGGGTGGGGGGGAGGGGGGGAAGGGGGGGGGGGGGTGGGGGGGGGGGGTGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* ** * * * * * * ** * *
4450682 GGGAGGGGGGGGGGAAGGGGGGGAGAGGGGAGGGGGGGGGGGAGGGGGCGAGGAAGGGGAGGTGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * * * *
4450747 GGGGGGGGGGGAGGGGGGGGGAGGTGGGTGGGGGGGGGGAGGGTGAGGGGGAGGAGGGGGGAGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * ** * ** * *** * ** * * *
4450812 AGGGGGGGGGGGGGGGAGGGGGACGGGGGGAGGGGAAGGGGGAGGCTAGAGCAGAGAGGGAGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * *** * * ** * * * *
4450877 GGGGCGGGAGGGGGGGGGGGTAAGGGGGCGGGGGGGGGGGTGAAGAGGGGAGCGGGGAGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
**
4450942 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
*
4451007 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * *
4451072 GGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGTGGGGGGGAGTGGGGGGGGAGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * * * *
4451137 CGGCGGGGGGGGGGGCGGGGTGGGGGGAGGGGGGGGAGGGGGGTGGGGGGTGGGGGCGTGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* *
4451202 GGGTGGGAGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGG
4451222 CAGGGGGGAG
Statistics
Matches: 547, Mismatches: 187, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 547 1.00
ACGTcount: A:0.08, C:0.02, G:0.86, T:0.05
Consensus pattern (1 bp):
G
Found at i:4451289 original size:61 final size:58
Alignment explanation
Indices: 4450932--4451350 Score: 241
Period size: 53 Copynumber: 7.6 Consensus size: 58
4450922 AGGGGAGCGG
* * * * *
4450932 GGAGGGG-GGG-GGGGGGGGGGGG-GGGGGGG-GGGGGGGGGGGGGGGGGGGGGGTTG
1 GGAGGGGTGGGAGGGGGGGGGGGGCGGGGGGGAGCGGGGGTGGGGGGTGGGGGCGTAG
4450986 GG-GGGG-GGG-GGGGGGGGGGGG-GGGGGGG-G-GGGGG-GGGGGG-GGGGG-G--G
1 GGAGGGGTGGGAGGGGGGGGGGGGCGGGGGGGAGCGGGGGTGGGGGGTGGGGGCGTAG
* * * * * **
4451033 GG-GGGGTGGG-GGGGGGGGGGGG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGAGGGGTGGGAGGGGGGGGGGGGCGGGGGGGAGCGGGGGTGGGGGGTGGGGGCGTAG
* * * * * *
4451088 GGGGGGGTGGGGGGGGGGGGGGGGGTGGGGGGGAGTGGGGG-GGGAGG-GGCGGCG--G
1 GGAGGGGT-GGGAGGGGGGGGGGGGCGGGGGGGAGCGGGGGTGGGGGGTGGGGGCGTAG
* * *
4451143 GG-GGGG-GGGCGGGGTGGGGGGAG-GGGGGGGAG-GGGGGTGGGGGGTGGGGGCGTGG
1 GGAGGGGTGGGAGGGG-GGGGGGGGCGGGGGGGAGCGGGGGTGGGGGGTGGGGGCGTAG
* *
4451198 GGGGGGGTGGGAGGGGGGGGGGGGCAGGGGGGAGCGGGAGGT-GGGGGTGGTGGGGCGGTAG
1 GGAGGGGTGGGAGGGGGGGGGGGGCGGGGGGGAGCGGG-GGTGGGGGGT-G-GGGGC-GTAG
* * * * * * *
4451259 GGAGGGGTGGG-GGGTGGGGTGTGGTGGGGGGGAGC-TGGG-GGGGGGAGGGGGTGTGG
1 GGAGGGGTGGGAGGG-GGGGGGGGGCGGGGGGGAGCGGGGGTGGGGGGTGGGGGCGTAG
* *
4451315 GGAGCGGGGGGGAGGGAAGGGTGGGGGCTGGGGGGG
1 GGAG-GGGTGGGAGGG--GGGGGGGGGC-GGGGGGG
4451351 GTGGGGAGGG
Statistics
Matches: 306, Mismatches: 28, Indels: 56
0.78 0.07 0.14
Matches are distributed among these distances:
47 7 0.02
48 22 0.07
49 2 0.01
50 10 0.03
51 17 0.06
52 31 0.10
53 41 0.13
54 6 0.02
55 9 0.03
56 23 0.08
57 33 0.11
58 30 0.10
59 30 0.10
60 16 0.05
61 29 0.09
ACGTcount: A:0.04, C:0.02, G:0.88, T:0.06
Consensus pattern (58 bp):
GGAGGGGTGGGAGGGGGGGGGGGGCGGGGGGGAGCGGGGGTGGGGGGTGGGGGCGTAG
Found at i:4451316 original size:26 final size:26
Alignment explanation
Indices: 4451287--4451376 Score: 79
Period size: 25 Copynumber: 3.6 Consensus size: 26
4451277 GTGTGGTGGG
4451287 GGGGAGCTGGGGGGGGGAGGG-GGTGT
1 GGGGAGCTGGGGGGGGGAGGGAGG-GT
4451313 GGGGAGC---GGGGGGGAGGGAAGGGT
1 GGGGAGCTGGGGGGGGGAGGG-AGGGT
4451337 GGGG-GCTGGGGGGGGTG-GGGAGGG-
1 GGGGAGCTGGGGGGGG-GAGGGAGGGT
*
4451361 GAGGGTG-TGGGGGGGG
1 G-GGGAGCTGGGGGGGG
4451377 TGGGATTGCA
Statistics
Matches: 56, Mismatches: 0, Indels: 17
0.77 0.00 0.23
Matches are distributed among these distances:
23 13 0.23
24 7 0.12
25 18 0.32
26 17 0.30
27 1 0.02
ACGTcount: A:0.09, C:0.03, G:0.79, T:0.09
Consensus pattern (26 bp):
GGGGAGCTGGGGGGGGGAGGGAGGGT
Found at i:4451366 original size:30 final size:30
Alignment explanation
Indices: 4449823--4451376 Score: 592
Period size: 33 Copynumber: 48.5 Consensus size: 30
4449813 GGGGGAAGCT
*
4449823 GGGGGGTCGGGCGGGGGGGGGGCGGGGG-GGCG
1 GGGGGGT-GGG-GGGGGGGGGG-GGGGGAGGGG
*
4449855 GGAGGGTGCGGGAGGGGGGGCGGGAGGGGAGGGAG
1 GGGGGGTG-GGG-GGGGGGG-GGG-GGGGAGGG-G
* * * * * *
4449890 GGAGGGCGGGGGGGTGGAGTGGAGGAGGTGG
1 GGGGGGTGGGGGGGGGGGGGGGGGGAGG-GG
* * *
4449921 GCGAAGGGAGGGGGGGGTGTGAGGGGGGGGCGCGGG
1 G-G-GGGGTGGGGGGGG-G-G-GGGGGGGGAG-GGG
* **
4449957 GAGAGGGG-GGGGGAAGGGGGGGAAAGGGAGCGGG
1 G-G-GGGGTGGGGG-GGGGGGGG-GGGGGAG-GGG
*** * ** *
4449991 GGGGAAAGGGGGCGGGGGGTTGGGGAGGAG
1 GGGGGGTGGGGGGGGGGGGGGGGGGAGGGG
*
4450021 GGGGAGTGGGGGGGTGGGGGCGGGGGGAGGGG
1 GGGGGGTGGGGGGG-GGGGG-GGGGGGAGGGG
***
4450053 GGGGGG-GCGGGGGGGGGGGGGATTGA--GG
1 GGGGGGTG-GGGGGGGGGGGGGGGGGAGGGG
* *
4450081 GGGAGG-GGGGGGCGGGGGGGGGGGAGGGG
1 GGGGGGTGGGGGGGGGGGGGGGGGGAGGGG
** * * **
4450110 GGGGGAAGGGGGAGGGAGCGGTGTGGTTAGTGTGG
1 GGGGGGTGGGGG-GGG-G-GGGGGGGGGAG-G-GG
* ** *
4450145 GTGGGGGT-AGGGGGGGGATGGAGGGAGGGG
1 G-GGGGGTGGGGGGGGGGGGGGGGGGAGGGG
4450175 GGGGGGTGGGGGGGGGGGGGGGGGGAGGGG
1 GGGGGGTGGGGGGGGGGGGGGGGGGAGGGG
** * *
4450205 GGGAGAGAAGGGGGAGGGGGGGGGGAGCTAGTGAGCAGA
1 GGG-G-GGTGGGGG-GGGGGGGGGG-G---G-GAG-GGG
** * * *
4450244 GGGAAGAGGGGGAGGGCTGGGGGTGGGGTGGGAG
1 GGGGGGTGGGGG-GGG--GGGGGGGGGGAGGG-G
* *
4450278 AGGTGAGTGGGGGGGTGGGGGGGGGAGCGAGGGG
1 -GGGGGGTGGGGGGG-GGGGGGGGG-G-GAGGGG
* *
4450312 GGGAGGG-GGGGGGGGGTGGGGGGGGTAAGTGGAA
1 GGG-GGGTGGGGGGGGG-GGGGGGGG-GAG-GG-G
* * ** *
4450346 AGTGGGTGGAGCGGGGGTCTAGGGGGGGAAGGGG
1 GGGGGGTGG-G-GGGGG--GGGGGGGGGGAGGGG
* * *
4450380 GGGGGG-GGTGGCGTGGAGGGGGGAGGAGGGCG
1 GGGGGGTGG-GG-GGGGGGGGGGGGGGAGGG-G
4450412 GTGTGCTGGGTAGGGGGGGGAGGAAGGGGGGGGAGGGAGG
1 G-G-G--GGGT-GGGGGGGG-GG--GGGGGGGGA-GG-GG
* *
4450452 AGGAGGGGTAGGGGTGGGTGGGGGGTAGGGGTGGTGG
1 -GG-GGGGT-GGGG-GGG-GGGGGG-GGGGGAGG-GG
* *
4450489 GGGAGG-GGGGGGGGTGGGGGGGGGAGGGG
1 GGGGGGTGGGGGGGGGGGGGGGGGGAGGGG
* * *
4450518 GGGGGG-GGGCGGGGTGGTGGGGGGAGGGG
1 GGGGGGTGGGGGGGGGGGGGGGGGGAGGGG
** * *
4450547 GGGGGAGTGGGGTAGGATGGTGGGTGGGAGGGG
1 GGGGG-GTGGGG--GGGGGGGGGGGGGGAGGGG
4450580 GGGGGGTGGGTGGGGGGGAGTGGGGGGG-GGGAG
1 GGGGGGTGGG-GGGGGGG-G-GGGGGGGAGGG-G
* * * *
4450613 TGGGGTTGAGGGGCGGGGTGGGGGGGAGGGG
1 GGGGGGTG-GGGGGGGGGGGGGGGGGAGGGG
* *
4450644 GGGAAGG-GGGGGGGGGGGTGGGGGG-GGGG
1 GGG-GGGTGGGGGGGGGGGGGGGGGGAGGGG
* * *
4450673 GGTGGG-GGGGGGAGGGGGGGGGGAAGGGG
1 GGGGGGTGGGGGGGGGGGGGGGGGGAGGGG
* *
4450702 GGGAGAGGGGAGGGGGGGGGGGAGGGGGCGAGGAAG
1 GGG-G-GGTG-GGGGGGGGGGG-GGGGG-GAGG-GG
*
4450738 GGGAGGTGGGGGGGGGGGGGAGGGGG-GGGG
1 GGGGGGTGGGGGGGGGGGGG-GGGGGAGGGG
*
4450768 AGGTGGGTGGGGGGGGGGAGGGTGAGGGGGAGGAGG
1 -GGGGGGT-GGGGGGGGG-GGG-G-GGGGGAGG-GG
* *
4450804 GGGGAG-GGAGGGGGGGGGGGGGGGAGGGG
1 GGGGGGTGGGGGGGGGGGGGGGGGGAGGGG
* *
4450833 GACGGGGG-GAGGGGAAGGGGGAGGCTAGAGCAGAGAGGGAG
1 G--GGGGGTG-GGGG--GGGGG-GG---G-G-GGGGAGGG-G
* **
4450874 GGGGGG-GCGGGAGGGGGGGGGGGTAAGGGG
1 GGGGGGTG-GGGGGGGGGGGGGGGGGAGGGG
*
4450904 GCGGGGG-GGGGGGTGAAGAGGGGAGCGGGGAGGGG
1 G-GGGGGTGGGGGG-G--G-GGGG-GGGGGGAGGGG
4450939 GGGGGG-GGGGGGGGGGGGGGGGGG-GGGG
1 GGGGGGTGGGGGGGGGGGGGGGGGGAGGGG
**
4450967 GGGGGG-GGGGGGGGGGTTGGGGGG-GGGG
1 GGGGGGTGGGGGGGGGGGGGGGGGGAGGGG
4450995 GGGGGG-GGGGGGGGGGGGGGGGGG-GGGG
1 GGGGGGTGGGGGGGGGGGGGGGGGGAGGGG
*
4451023 GGGGGG-GGGGGGGGGGTGGGGGGG-GGGG
1 GGGGGGTGGGGGGGGGGGGGGGGGGAGGGG
4451051 GGGGGG-GGGGGGGGGGGGGGGGGG-GGGG
1 GGGGGGTGGGGGGGGGGGGGGGGGGAGGGG
*
4451079 GGGGGG-GGGGGGGGGGTGGGGGGG-GGGG
1 GGGGGGTGGGGGGGGGGGGGGGGGGAGGGG
* *
4451107 GGGGGGTGGGGGGGAGTGGGGGGGGAGGGG
1 GGGGGGTGGGGGGGGGGGGGGGGGGAGGGG
*
4451137 CGGCGGGG-GGGGGGGCGGGGTGGGGGGAGGGG
1 -GG-GGGGTGGGGGGG-GGGGGGGGGGGAGGGG
* * * *
4451169 GGGGAG-GGGGGTGGGGGGTGGGGGCGTGGG
1 GGGGGGTGGGGGGGGGGGGGGGGGGAG-GGG
4451199 GGGGGGTGGGAGGGGGGGGGGGGCAGGG-GGGAG
1 GGGGGGTGGG-GGGGGGGGGGGG--GGGAGGG-G
* **
4451232 CGGGAGGTGGGGGTGGTGGGGCGGTAGGGAGGGG
1 -GGGGGGTGGGGG-GG-GGGG-GGGGGGGAGGGG
* * *
4451266 TGGGGGGT-GGGGTGTGGTGGGGGGGAGCTGGG
1 -GGGGGGTGGGGGGGGGGGGGGGGGGAG--GGG
*
4451298 GGGGGGAGGGGGTGTGGGGAGCGGGGGGGA--GG
1 GGGGGGTGGGGG-G-GGGG-G-GGGGGGGAGGGG
** *
4451330 GAAGGGTGGGGGCTGGGGGGGGTGGGGAGGGG
1 GGGGGGTGGGGG--GGGGGGGGGGGGGAGGGG
* *
4451362 AGGGTGTGGGGGGGG
1 GGGGGGTGGGGGGGG
4451377 TGGGATTGCA
Statistics
Matches: 1178, Mismatches: 203, Indels: 284
0.71 0.12 0.17
Matches are distributed among these distances:
27 14 0.01
28 168 0.14
29 90 0.08
30 125 0.11
31 114 0.10
32 164 0.14
33 176 0.15
34 101 0.09
35 69 0.06
36 54 0.05
37 34 0.03
38 20 0.02
39 33 0.03
40 12 0.01
41 4 0.00
ACGTcount: A:0.10, C:0.03, G:0.81, T:0.07
Consensus pattern (30 bp):
GGGGGGTGGGGGGGGGGGGGGGGGGAGGGG
Found at i:4451377 original size:25 final size:21
Alignment explanation
Indices: 4450487--4451380 Score: 515
Period size: 20 Copynumber: 40.0 Consensus size: 21
4450477 TAGGGGTGGT
*
4450487 GGGGGAGGGGGGGGGGTGGGG
1 GGGGGGGGGGGGGGGGTGGGG
4450508 GGGGGAGGGGGGGGGGG-GGCGG
1 GGGGG-GGGGGGGGGGGTGG-GG
4450530 GGTGGTGGGGGGAGGGGGG-GGGAG
1 GG-GG-GGGGGG-GGGGGGTGGG-G
** ** *
4450554 TGGGGTAGGATGGTGGGTGGGAG
1 -GGGGGGGGGGGGGGGGTGGG-G
4450577 GGGGGGGGGTGGGTGGGG-GGGAG
1 GGGGGGGGG-GGG-GGGGTGGG-G
* * *
4450600 TGGGGGGGGGGAGTGGGGTTGAG
1 -GGGGGGGGGG-GGGGGGTGGGG
* * *
4450623 GGGCGGGGTGGGGGGGAGGGG
1 GGGGGGGGGGGGGGGGTGGGG
4450644 GGGAAGGGGGGGGGGGGGTGGGG
1 GGG--GGGGGGGGGGGGGTGGGG
4450667 GGGGGGGGTGGGGGGGG-GAGGG
1 GGGGGGGG-GGGGGGGGTG-GGG
* *
4450689 GGGGGGGAAGGGGGGGAGAGGGG
1 GGGGGGG--GGGGGGGGGTGGGG
*
4450712 AGGGGGGGGGGGAGGGGGCGAGGAAG
1 -GGGGGGGGGGG-GGGGGTG-GG--G
* *
4450738 GGGAGGTGGGGGGGGGG-GGGA
1 GGG-GGGGGGGGGGGGGTGGGG
* *
4450759 GGGGGGGGGAGGTGGGTGGGG
1 GGGGGGGGGGGGGGGGTGGGG
* *
4450780 GGGGGGAGGGTGAGGGGGAGGAGG
1 GGGGGG-GGG-GGGGGGGTGG-GG
4450804 GGGGAGGGAGGGGGGGGG-GGGG
1 GGGG-GGG-GGGGGGGGGTGGGG
* ** *
4450826 GGAGGGGGACGGGGGGAGGGG
1 GGGGGGGGGGGGGGGGTGGGG
* * *
4450847 AAGGGGGAGGCTAGAGCAGAGAGGGAGGGG
1 --GGGGG-GG---G-G--GGGGGGGTGGGG
*
4450877 GGGGCGGGAGGGGGGGGG-GGTAAG
1 GGGG-GGG-GGGGGGGGGTGG--GG
* * *
4450901 GGGGCGGGGGGGGGGGTGAAGA
1 GGGGGGGGGGGGGGGGTG-GGG
* * *
4450923 GGGGAGCGGGGAGGGG-GGGG
1 GGGGGGGGGGGGGGGGTGGGG
4450943 GGGGGGGGGGGGGGGG-GGGG
1 GGGGGGGGGGGGGGGGTGGGG
4450963 GGGGGGGGGGGGGGGG-GGGG
1 GGGGGGGGGGGGGGGGTGGGG
**
4450983 TTGGGGGGGGGGGGGG-GGGG
1 GGGGGGGGGGGGGGGGTGGGG
4451003 GGGGGGGGGGGGGGGG-GGGG
1 GGGGGGGGGGGGGGGGTGGGG
4451023 GGGGGGGGGGGGGGGGTGGGG
1 GGGGGGGGGGGGGGGGTGGGG
4451044 GGGGGGGGGGGGGGGG-GGGG
1 GGGGGGGGGGGGGGGGTGGGG
4451064 GGGGGGGGGGGGGGGG-GGGG
1 GGGGGGGGGGGGGGGGTGGGG
4451084 GGGGGGGGGGGTGGGGG-GGGG
1 GGGGGGGGGGG-GGGGGTGGGG
4451105 GGGGGGGGTGGGGGGGAGTGGGG
1 GGGGGGGG-GGGGGGG-GTGGGG
* * *
4451128 GGGGAGGGGCGGCGGG-GGGG
1 GGGGGGGGGGGGGGGGTGGGG
* * *
4451148 GGGGCGGGGTGGGGGGAGGGG
1 GGGGGGGGGGGGGGGGTGGGG
4451169 GGGGAGGGGGGTGGGGGGTGGGG
1 GGGG-GGGGGG-GGGGGGTGGGG
* * *
4451192 GCGTGGGGGGGGGTGGGAGGGG
1 G-GGGGGGGGGGGGGGGTGGGG
* *
4451214 GGGGGGGGCAGGGGGGAGCGGGAG
1 GGGGGGGG--GGGGGGGGTGGG-G
* *
4451238 GTGGGGGTGGTGGGGCGGTAGGGAG
1 G-GGGGG-GGGGGGGGGGT-GGG-G
4451263 GGGTGGGGGGTGGGGTGTGGTGGGG
1 GGG-GGGGGG-GGGG-G-GGTGGGG
* ** *
4451288 GGGAGCTGGGGGGGGGAGGGG
1 GGGGGGGGGGGGGGGGTGGGG
* * *
4451309 GTGTGGGGAGCGGGGGGGAGGGAAG
1 G-G-GGGGGGGGGGGGGGTGGG--G
*
4451334 GGTGGGGGCTGGGGGGGGTGGGG
1 GG-GGGGG-GGGGGGGGGTGGGG
4451357 AGGGGAGGGTGTGGGGGGGGTGGG
1 -GGGG-GGG-G-GGGGGGGGTGGG
4451381 ATTGCAGGGG
Statistics
Matches: 699, Mismatches: 100, Indels: 144
0.74 0.11 0.15
Matches are distributed among these distances:
20 159 0.23
21 106 0.15
22 112 0.16
23 141 0.20
24 85 0.12
25 61 0.09
26 15 0.02
27 4 0.01
28 6 0.01
29 1 0.00
30 9 0.01
ACGTcount: A:0.08, C:0.02, G:0.84, T:0.06
Consensus pattern (21 bp):
GGGGGGGGGGGGGGGGTGGGG
Found at i:4451480 original size:23 final size:24
Alignment explanation
Indices: 4451432--4451493 Score: 72
Period size: 23 Copynumber: 2.6 Consensus size: 24
4451422 GGGGTTGTAG
4451432 GGGGGGGGGGGATGGAAAGGGATA
1 GGGGGGGGGGGATGGAAAGGGATA
** *
4451456 GGGGGGGGGGGA-GGAGGGGGTTA
1 GGGGGGGGGGGATGGAAAGGGATA
* *
4451479 GGGGGGAGGAGATGG
1 GGGGGGGGGGGATGG
4451494 GTTGGGAGGA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
23 18 0.56
24 14 0.44
ACGTcount: A:0.19, C:0.00, G:0.73, T:0.08
Consensus pattern (24 bp):
GGGGGGGGGGGATGGAAAGGGATA
Found at i:4452136 original size:1 final size:1
Alignment explanation
Indices: 4451920--4452129 Score: 348
Period size: 1 Copynumber: 210.0 Consensus size: 1
4451910 TTTGGTATGG
*
4451920 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*
4451985 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * ** *
4452050 TTTTTTTTTTTTTTTTATCTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*
4452115 TTTTTTCTTTTTTTT
1 TTTTTTTTTTTTTTT
4452130 AATTTTTCTA
Statistics
Matches: 195, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 195 1.00
ACGTcount: A:0.00, C:0.01, G:0.02, T:0.96
Consensus pattern (1 bp):
T
Found at i:4460737 original size:16 final size:16
Alignment explanation
Indices: 4460716--4460749 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
4460706 TCAAAATAGT
*
4460716 TCTTGTTTGAGATAAC
1 TCTTGTTTAAGATAAC
*
4460732 TCTTGTTTAATATAAC
1 TCTTGTTTAAGATAAC
4460748 TC
1 TC
4460750 CTACTTAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.26, C:0.15, G:0.12, T:0.47
Consensus pattern (16 bp):
TCTTGTTTAAGATAAC
Found at i:4460773 original size:16 final size:16
Alignment explanation
Indices: 4460754--4460828 Score: 80
Period size: 16 Copynumber: 4.7 Consensus size: 16
4460744 TAACTCCTAC
4460754 TTAAAATAATTATTAT
1 TTAAAATAATTATTAT
*
4460770 TTAAAATAAGTATTAT
1 TTAAAATAATTATTAT
* * *
4460786 TTAGAGTAACTT-TCAT
1 TTAAAATAA-TTATTAT
*
4460802 TTAAAATAATTGTTAT
1 TTAAAATAATTATTAT
*
4460818 TTAAAACAATT
1 TTAAAATAATT
4460829 CTTGTTCAGA
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
15 2 0.04
16 45 0.94
17 1 0.02
ACGTcount: A:0.45, C:0.04, G:0.05, T:0.45
Consensus pattern (16 bp):
TTAAAATAATTATTAT
Found at i:4460887 original size:16 final size:16
Alignment explanation
Indices: 4460868--4460938 Score: 70
Period size: 16 Copynumber: 4.4 Consensus size: 16
4460858 GTTATCGTTC
4460868 AAAATAACTCTTATTT
1 AAAATAACTCTTATTT
* *
4460884 AAAATAATTCTAATTT
1 AAAATAACTCTTATTT
* *
4460900 AAAATAATTCTTGTTT
1 AAAATAACTCTTATTT
* * * *
4460916 ATAACAGCTCTTATTC
1 AAAATAACTCTTATTT
4460932 AAAATAA
1 AAAATAA
4460939 TTTTTGTAGA
Statistics
Matches: 42, Mismatches: 13, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
16 42 1.00
ACGTcount: A:0.45, C:0.11, G:0.03, T:0.41
Consensus pattern (16 bp):
AAAATAACTCTTATTT
Found at i:4462394 original size:3 final size:3
Alignment explanation
Indices: 4462379--4462429 Score: 52
Period size: 3 Copynumber: 17.3 Consensus size: 3
4462369 CTCAATATAA
* * *
4462379 TAT TAT GAT TAT TAT T-T TAA AAT T-T TAAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT
4462423 TAT TAT T
1 TAT TAT T
4462430 CATTGCAGTT
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
2 4 0.10
3 33 0.85
4 2 0.05
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:4464248 original size:21 final size:22
Alignment explanation
Indices: 4464216--4464259 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
4464206 TGATTAATAA
4464216 ATATTAAATATAAATATTTTTT
1 ATATTAAATATAAATATTTTTT
**
4464238 ATATT-AATATATTTATTTTTT
1 ATATTAAATATAAATATTTTTT
4464259 A
1 A
4464260 AAAAATTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (22 bp):
ATATTAAATATAAATATTTTTT
Found at i:4465108 original size:21 final size:21
Alignment explanation
Indices: 4465078--4465122 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
4465068 ACTTTTACAT
* *
4465078 ATTATTATTATTATTTAAAAA
1 ATTATAATTATAATTTAAAAA
*
4465099 ATTATAATTATAATTTTAAAA
1 ATTATAATTATAATTTAAAAA
4465120 ATT
1 ATT
4465123 GGTGAGAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
ATTATAATTATAATTTAAAAA
Found at i:4496158 original size:13 final size:13
Alignment explanation
Indices: 4496140--4496165 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4496130 ATTTGATTCG
4496140 ACATAATATATTA
1 ACATAATATATTA
4496153 ACATAATATATTA
1 ACATAATATATTA
4496166 TTATGTTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (13 bp):
ACATAATATATTA
Found at i:4496333 original size:18 final size:17
Alignment explanation
Indices: 4496312--4496355 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
4496302 TAATATATTT
4496312 TATTATTAAAATAATAAA
1 TATTATTAAAATAA-AAA
* *
4496330 TATTATTTAATATAACAA
1 TATTA-TTAAAATAAAAA
4496348 TATTATTA
1 TATTATTA
4496356 TTTTAATAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 3 0.13
18 12 0.52
19 8 0.35
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (17 bp):
TATTATTAAAATAAAAA
Found at i:4496338 original size:25 final size:25
Alignment explanation
Indices: 4496265--4496338 Score: 59
Period size: 21 Copynumber: 3.0 Consensus size: 25
4496255 TTTCTTTAAC
*
4496265 ATTATTAAATATAAATAAATATTA-AT
1 ATTATTAAA-AT-AATAAATATTATTT
**
4496291 ATTGACAAAAATAAT--ATA-T-TTT
1 ATT-ATTAAAATAATAAATATTATTT
4496313 ATTATTAAAATAATAAATATTATTT
1 ATTATTAAAATAATAAATATTATTT
4496338 A
1 A
4496339 ATATAACAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 13
0.67 0.09 0.24
Matches are distributed among these distances:
21 9 0.24
22 5 0.14
23 6 0.16
24 1 0.03
25 7 0.19
26 5 0.14
27 4 0.11
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (25 bp):
ATTATTAAAATAATAAATATTATTT
Found at i:4497078 original size:3 final size:3
Alignment explanation
Indices: 4497070--4497101 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
4497060 TTTTAATGCA
4497070 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
4497102 CACATCAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:4497549 original size:17 final size:18
Alignment explanation
Indices: 4497527--4497579 Score: 58
Period size: 16 Copynumber: 3.0 Consensus size: 18
4497517 TAGAAAAAAA
*
4497527 TTATTTTAAATTAA-ATT
1 TTATTTTAAATTAATAAT
4497544 TTA-TTT-AATTAATAAT
1 TTATTTTAAATTAATAAT
4497560 TTATTTTAAACTATAATAAT
1 TTATTTTAAA-T-TAATAAT
4497580 ATGAATATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
15 6 0.20
16 8 0.27
17 6 0.20
18 2 0.07
19 1 0.03
20 7 0.23
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (18 bp):
TTATTTTAAATTAATAAT
Found at i:4501674 original size:14 final size:13
Alignment explanation
Indices: 4501652--4501690 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
4501642 ACAAATACTG
4501652 TTTTTTTTTATTT
1 TTTTTTTTTATTT
4501665 TTTTTATTTTATTT
1 TTTTT-TTTTATTT
4501679 TTAATTTTTTTA
1 TT--TTTTTTTA
4501691 ATAATTTATG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 5 0.22
14 10 0.43
15 5 0.22
16 3 0.13
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTTTTTTATTT
Found at i:4501685 original size:21 final size:19
Alignment explanation
Indices: 4501652--4501690 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
4501642 ACAAATACTG
4501652 TTTTTTTTTATTTTTTTTA
1 TTTTTTTTTATTTTTTTTA
*
4501671 TTTTATTTTTAATTTTTTTA
1 TTTT-TTTTTATTTTTTTTA
4501691 ATAATTTATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (19 bp):
TTTTTTTTTATTTTTTTTA
Found at i:4502056 original size:28 final size:29
Alignment explanation
Indices: 4502023--4502085 Score: 92
Period size: 28 Copynumber: 2.2 Consensus size: 29
4502013 ATTAATCTTA
*
4502023 ATTTTAAAATAAATTATTAAAATATTATT
1 ATTTTAAAATAAATTATTAAAAGATTATT
* *
4502052 -TTTTAAAATTATTTATTAAAAGATTATT
1 ATTTTAAAATAAATTATTAAAAGATTATT
4502080 ATTTTA
1 ATTTTA
4502086 TTTATATAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
28 25 0.83
29 5 0.17
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (29 bp):
ATTTTAAAATAAATTATTAAAAGATTATT
Found at i:4502059 original size:15 final size:14
Alignment explanation
Indices: 4502039--4502085 Score: 51
Period size: 13 Copynumber: 3.2 Consensus size: 14
4502029 AAATAAATTA
4502039 TTAAAATATTATTTT
1 TTAAAA-ATTATTTT
*
4502054 TT-AAAATTATTTA
1 TTAAAAATTATTTT
4502067 TTAAAAGATTATTATT
1 TTAAAA-ATTATT-TT
4502083 TTA
1 TTA
4502086 TTTATATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
13 9 0.33
14 6 0.22
15 8 0.30
16 4 0.15
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (14 bp):
TTAAAAATTATTTT
Found at i:4502382 original size:18 final size:19
Alignment explanation
Indices: 4502359--4502403 Score: 67
Period size: 18 Copynumber: 2.5 Consensus size: 19
4502349 AATTATATAA
4502359 AAAAATAAAATAT-AATTT
1 AAAAATAAAATATAAATTT
*
4502377 AAAAAT-TAATATAAATTT
1 AAAAATAAAATATAAATTT
4502395 AAAAATAAA
1 AAAAATAAA
4502404 TTTTTTTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 5 0.22
18 17 0.74
19 1 0.04
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (19 bp):
AAAAATAAAATATAAATTT
Found at i:4502399 original size:19 final size:20
Alignment explanation
Indices: 4502342--4502399 Score: 57
Period size: 19 Copynumber: 3.0 Consensus size: 20
4502332 AATTTTAAAC
* *
4502342 ATAAAATAATTATATAAAAAA
1 ATAAAAT-ATAATTTAAAAAA
4502363 ATAAAATATAATTT-AAAAA
1 ATAAAATATAATTTAAAAAA
* *
4502382 TTAATATA-AATTTAAAAA
1 ATAAAATATAATTTAAAAA
4502400 TAAATTTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
18 5 0.16
19 15 0.47
20 5 0.16
21 7 0.22
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAAAATATAATTTAAAAAA
Found at i:4502439 original size:16 final size:15
Alignment explanation
Indices: 4502413--4502446 Score: 59
Period size: 16 Copynumber: 2.2 Consensus size: 15
4502403 ATTTTTTTAA
4502413 AAATTTATATATTAT
1 AAATTTATATATTAT
4502428 AAATTATATATATTAT
1 AAATT-TATATATTAT
4502444 AAA
1 AAA
4502447 AAATAAAACT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
AAATTTATATATTAT
Found at i:4502483 original size:23 final size:24
Alignment explanation
Indices: 4502437--4502483 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
4502427 TAAATTATAT
* *
4502437 ATATTATAAAAAATAAAACTTAAA
1 ATATGATAAAAAATAAAACATAAA
*
4502461 ATATGATAAAAAAT-TAACATAAA
1 ATATGATAAAAAATAAAACATAAA
4502484 CTCGAATACA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.66, C:0.04, G:0.02, T:0.28
Consensus pattern (24 bp):
ATATGATAAAAAATAAAACATAAA
Found at i:4502583 original size:16 final size:16
Alignment explanation
Indices: 4502562--4502594 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
4502552 ATACATCATG
*
4502562 AAAAATAATATATATA
1 AAAAATAATATACATA
4502578 AAAAATAATATACATA
1 AAAAATAATATACATA
4502594 A
1 A
4502595 TATATATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (16 bp):
AAAAATAATATACATA
Found at i:4502632 original size:45 final size:45
Alignment explanation
Indices: 4502582--4502672 Score: 103
Period size: 45 Copynumber: 2.0 Consensus size: 45
4502572 TATATAAAAA
* * *
4502582 ATAAT-ATACATAATATATATATTTGTGTTATTTTTTATTTTATAT
1 ATAATAATACATAATATATATATTTGAGATA-TTTTTATATTATAT
** * *
4502627 ATAATAATTTATATTATATATTTTTGAGATATTTTTATATTATAT
1 ATAATAATACATAATATATATATTTGAGATATTTTTATATTATAT
4502672 A
1 A
4502673 ATTTTTTATC
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
45 19 0.50
46 19 0.50
ACGTcount: A:0.37, C:0.01, G:0.04, T:0.57
Consensus pattern (45 bp):
ATAATAATACATAATATATATATTTGAGATATTTTTATATTATAT
Found at i:4502686 original size:28 final size:26
Alignment explanation
Indices: 4502634--4502691 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
4502624 TATATAATAA
*
4502634 TTTATATTATATATTTTTGAGATATT
1 TTTATATTATATATTTTTGACATATT
*
4502660 TTTATATTATATAATTTTTTATCATATT
1 TTTATATTATAT-ATTTTTGA-CATATT
4502688 TTTA
1 TTTA
4502692 GTCATATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 12 0.43
27 7 0.25
28 9 0.32
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (26 bp):
TTTATATTATATATTTTTGACATATT
Found at i:4502923 original size:14 final size:15
Alignment explanation
Indices: 4502885--4502930 Score: 51
Period size: 16 Copynumber: 3.1 Consensus size: 15
4502875 ATCACATGTG
4502885 TAAAATAATTATATTT
1 TAAAATAA-TATATTT
*
4502901 TAATA-AATA-ATTT
1 TAAAATAATATATTT
4502914 TAAAATAATATTATTT
1 TAAAATAATA-TATTT
4502930 T
1 T
4502931 GATAATTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
13 8 0.32
14 6 0.24
15 2 0.08
16 9 0.36
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TAAAATAATATATTT
Found at i:4502947 original size:29 final size:29
Alignment explanation
Indices: 4502886--4502948 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
4502876 TCACATGTGT
*
4502886 AAAATAATTATATTTTAATAAATAATTTT
1 AAAATAATTATATTTTAATAAATAATTTA
* * *
4502915 AAAATAA-TATTATTTTGATAATTTATTTA
1 AAAATAATTA-TATTTTAATAAATAATTTA
4502944 AAAAT
1 AAAAT
4502949 TAAGATTAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 2 0.07
29 27 0.93
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.48
Consensus pattern (29 bp):
AAAATAATTATATTTTAATAAATAATTTA
Found at i:4503028 original size:23 final size:23
Alignment explanation
Indices: 4502998--4503044 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
4502988 GGACAAATTG
*
4502998 TCTTCGCAATCTATAGTTGCTGC
1 TCTTCGCAACCTATAGTTGCTGC
4503021 TCTTCGCAACCTATAGTTGCTGC
1 TCTTCGCAACCTATAGTTGCTGC
4503044 T
1 T
4503045 TTACTGCAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.17, C:0.28, G:0.17, T:0.38
Consensus pattern (23 bp):
TCTTCGCAACCTATAGTTGCTGC
Found at i:4503851 original size:20 final size:20
Alignment explanation
Indices: 4503828--4503889 Score: 59
Period size: 20 Copynumber: 3.5 Consensus size: 20
4503818 TTAAAATATT
4503828 ATATATTTATATAAATTTTA
1 ATATATTTATATAAATTTTA
4503848 ATATA-TTA-AT-AA--TT-
1 ATATATTTATATAAATTTTA
4503862 -TAT-TTTATATAAATTTTA
1 ATATATTTATATAAATTTTA
*
4503880 AAATATTTAT
1 ATATATTTAT
4503890 GTATTCATGT
Statistics
Matches: 33, Mismatches: 1, Indels: 16
0.66 0.02 0.32
Matches are distributed among these distances:
13 6 0.18
14 2 0.06
15 4 0.12
17 4 0.12
18 2 0.06
19 5 0.15
20 10 0.30
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
ATATATTTATATAAATTTTA
Found at i:4504284 original size:4 final size:4
Alignment explanation
Indices: 4504275--4504305 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
4504265 TTTTAATTAT
4504275 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
4504306 TTAACTATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:4504591 original size:232 final size:230
Alignment explanation
Indices: 4504287--4504808 Score: 642
Period size: 232 Copynumber: 2.2 Consensus size: 230
4504277 TATTTATTTA
* * * *
4504287 TTTATTTATTTATTTATTTTTAACTATTATGTATATATCTTCATTTTTATAATTATAATTCAGTA
1 TTTATTTATTTATTTACTTTTAACTATTATGTATATGTATTCATTTTTATAATTATAATTCAGAA
* *
4504352 AACAATAACT-AAAAATTAATGAATATAAATAATTCTTACATATTTAATTTTAATAATTAATATA
66 AACAATAACTAAAAAATTAATGAACATAAATAATTCCTACATATTTAATTTTAATAA-TAATATA
* * *
4504416 AATTATTATATTAGTACAACAAATGTCATTCAACT-AGGTCTTTAA-TTTTTTTATTATTTGCTT
130 AATTATTATATTAATACAACAAATGTAATCCAA-TAAGGTCTTTAATTTTTTTTATTATTTGCTT
* *
4504479 -TTTCAAAAAATTAAAAAAGAA-AATAAAAACT-TACAGTTAT
194 ATTTAAAAAAACTAAAAAA-AAGAAT--AAA-TGTA-A-TTAT
* *
4504519 TTTATTTATTTATTTACTTTTAACTATTATGTATATGTTTTCATTTTTATAATTATAATTTAGAA
1 TTTATTTATTTATTTACTTTTAACTATTATGTATATGTATTCATTTTTATAATTATAATTCAGAA
* * * ** * *
4504584 AACAATAATTAAAAAATTAATGAACATAAATAATTCCTACTTTTTTGTTTTTTATAATAGTATAA
66 AACAATAACTAAAAAATTAATGAACATAAATAATTCCTACATATTTAATTTTAATAATAATATAA
** * *
4504649 ATTATTATATTAATATGACAAATGTAATCCAATAAGGTCTTTAATTTTTTTTTGTTGTTTGCTTA
131 ATTATTATATTAATACAACAAATGTAATCCAATAAGGTCTTTAA-TTTTTTTTATTATTTGCTTA
4504714 TTTAAAAAAACTAAAAAAAAGGAATAAATGTAATTAT
195 TTTAAAAAAACTAAAAAAAA-GAATAAATGTAATTAT
* * * * *
4504751 TTTATTTGTTTATTTGCTTTCTAATTATTATGTATATGTATTCATTTCTATAAGTATA
1 TTTATTTATTTATTTACTTT-TAACTATTATGTATATGTATTCATTTTTATAATTATA
4504809 CGACACAAAA
Statistics
Matches: 252, Mismatches: 29, Indels: 17
0.85 0.10 0.06
Matches are distributed among these distances:
231 1 0.00
232 135 0.54
233 74 0.29
234 23 0.09
235 16 0.06
236 3 0.01
ACGTcount: A:0.39, C:0.07, G:0.06, T:0.48
Consensus pattern (230 bp):
TTTATTTATTTATTTACTTTTAACTATTATGTATATGTATTCATTTTTATAATTATAATTCAGAA
AACAATAACTAAAAAATTAATGAACATAAATAATTCCTACATATTTAATTTTAATAATAATATAA
ATTATTATATTAATACAACAAATGTAATCCAATAAGGTCTTTAATTTTTTTTATTATTTGCTTAT
TTAAAAAAACTAAAAAAAAGAATAAATGTAATTAT
Found at i:4505602 original size:29 final size:29
Alignment explanation
Indices: 4505569--4505627 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
4505559 AACCTACAAC
4505569 AGAGTTTTTATTTTTAATCAAGAAAACTA
1 AGAGTTTTTATTTTTAATCAAGAAAACTA
4505598 AGAGTTTTTATTTTTAATCAAGAAAACTA
1 AGAGTTTTTATTTTTAATCAAGAAAACTA
4505627 A
1 A
4505628 TTTTAAAGTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.42, C:0.07, G:0.10, T:0.41
Consensus pattern (29 bp):
AGAGTTTTTATTTTTAATCAAGAAAACTA
Found at i:4506506 original size:84 final size:82
Alignment explanation
Indices: 4506264--4506506 Score: 272
Period size: 82 Copynumber: 2.9 Consensus size: 82
4506254 AGAGCTTATC
* * * * * *
4506264 TTAAGACATTCTATTTTAGACATTATCTTGTTAAGACAAGTTTAGCTATATTATCTTATTAAGAT
1 TTAACACATT-TATTTTAGACATTGTTTTGTTAAGACAACTTTATCAATATTATCTTATTAAGAT
* **
4506329 AAATTTATCCATTTTGTT
65 AAACTTATTTATTTTGTT
* * * *
4506347 TTAACACATTTATTTTAGACATTGTTTTGTTAAGACAATTTTATCAATATTGTCTTATTAAAACA
1 TTAACACATTTATTTTAGACATTGTTTTGTTAAGACAACTTTATCAATATTATCTTATTAAGATA
*
4506412 AGCTTATTTATTTTGTT
66 AACTTATTTATTTTGTT
* * * *
4506429 TTAACACATGTTTATTTTATATATTGTTTTGTTAATACAACTTTATTC-ATGTTATCTTATTAAG
1 TTAACACA--TTTATTTTAGACATTGTTTTGTTAAGACAACTTTA-TCAATATTATCTTATTAAG
*
4506493 ATAAACTTGTTTAT
63 ATAAACTTATTTAT
4506507 ATTATCTCAA
Statistics
Matches: 134, Mismatches: 23, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
82 68 0.51
83 9 0.07
84 55 0.41
85 2 0.01
ACGTcount: A:0.32, C:0.10, G:0.09, T:0.50
Consensus pattern (82 bp):
TTAACACATTTATTTTAGACATTGTTTTGTTAAGACAACTTTATCAATATTATCTTATTAAGATA
AACTTATTTATTTTGTT
Found at i:4510589 original size:2 final size:2
Alignment explanation
Indices: 4510582--4510614 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
4510572 GAAATTTAGT
4510582 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
4510615 GTGTGTGTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:4511386 original size:2 final size:2
Alignment explanation
Indices: 4511379--4511411 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
4511369 TGAATGTTTC
*
4511379 TG TG TG TG TG TG TG TG TG TG TG TG TT TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
4511412 ACTAACGTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.00, G:0.45, T:0.55
Consensus pattern (2 bp):
TG
Found at i:4515890 original size:1 final size:1
Alignment explanation
Indices: 4515884--4515908 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
4515874 TTCTCGAAGG
4515884 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
4515909 CTAGATTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:4519070 original size:12 final size:13
Alignment explanation
Indices: 4519053--4519085 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
4519043 GCTAGTTGTG
*
4519053 CCTTTTTTGT-AA
1 CCTTTTTCGTAAA
4519065 CCTTTTTCGTAAA
1 CCTTTTTCGTAAA
4519078 CCTTTTTC
1 CCTTTTTC
4519086 CTTTAAGGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 9 0.47
13 10 0.53
ACGTcount: A:0.15, C:0.24, G:0.06, T:0.55
Consensus pattern (13 bp):
CCTTTTTCGTAAA
Found at i:4527033 original size:20 final size:20
Alignment explanation
Indices: 4527003--4527051 Score: 71
Period size: 21 Copynumber: 2.4 Consensus size: 20
4526993 ATTTAAATTG
* *
4527003 ATTTAATTTAAATTAATATTT
1 ATTTAATTAAAAATAAT-TTT
4527024 ATTTAATTAAAAATAATTTT
1 ATTTAATTAAAAATAATTTT
4527044 ATTTAATT
1 ATTTAATT
4527052 TTTATAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
ATTTAATTAAAAATAATTTT
Found at i:4527986 original size:19 final size:19
Alignment explanation
Indices: 4527964--4528000 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
4527954 AATATATCAT
4527964 TTAAAAATAAAATAAAAAA
1 TTAAAAATAAAATAAAAAA
*
4527983 TTAAAACTAAAATAAAAA
1 TTAAAAATAAAATAAAAA
4528001 TATTTTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.22
Consensus pattern (19 bp):
TTAAAAATAAAATAAAAAA
Found at i:4531739 original size:2 final size:2
Alignment explanation
Indices: 4531734--4531784 Score: 88
Period size: 2 Copynumber: 26.5 Consensus size: 2
4531724 ATACATTAAA
4531734 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
4531776 A- AG A- AG AG A
1 AG AG AG AG AG A
4531785 AACCTGAAAA
Statistics
Matches: 47, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
1 2 0.04
2 45 0.96
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (2 bp):
AG
Found at i:4534206 original size:21 final size:20
Alignment explanation
Indices: 4534177--4534216 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
4534167 TTATCCTACA
*
4534177 TTTTTTATTATATAAGTTGG
1 TTTTTTATTATAGAAGTTGG
*
4534197 TTTTTGTATTTTAGAAGTTG
1 TTTTT-TATTATAGAAGTTG
4534217 CTTGTTATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.23, C:0.00, G:0.17, T:0.60
Consensus pattern (20 bp):
TTTTTTATTATAGAAGTTGG
Found at i:4535379 original size:3 final size:3
Alignment explanation
Indices: 4535373--4535408 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
4535363 CGCCACCCGA
*
4535373 GTT GTT GTT GTT GTT GTT GTT GTT GTT GTT GAT GTT
1 GTT GTT GTT GTT GTT GTT GTT GTT GTT GTT GTT GTT
4535409 AATGTCGCCA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.03, C:0.00, G:0.33, T:0.64
Consensus pattern (3 bp):
GTT
Found at i:4535950 original size:16 final size:18
Alignment explanation
Indices: 4535926--4535959 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
4535916 AATATAATTA
4535926 TATACTTATA-TATTTTT
1 TATACTTATATTATTTTT
4535943 TATA-TTATATTATTTTT
1 TATACTTATATTATTTTT
4535960 ATTATATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (18 bp):
TATACTTATATTATTTTT
Found at i:4535951 original size:14 final size:13
Alignment explanation
Indices: 4535934--4535969 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 13
4535924 TATATACTTA
4535934 TATATTTTTTATAT
1 TATATTTTTT-TAT
4535948 TATATTATTTTTAT
1 TATATT-TTTTTAT
4535962 TATATTTT
1 TATATTTT
4535970 AATTATTTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 2 0.10
14 15 0.71
15 4 0.19
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
TATATTTTTTTAT
Found at i:4535995 original size:3 final size:3
Alignment explanation
Indices: 4535987--4536021 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
4535977 TGAATATGAT
4535987 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
4536022 TTAATTTAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:4536062 original size:23 final size:23
Alignment explanation
Indices: 4536036--4536082 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
4536026 TTTAATTTGA
4536036 TAATTTTATT-TTAATCTAAGTTT
1 TAATTTT-TTCTTAATCTAAGTTT
* *
4536059 TAATTTTTTCTTATTCTAATTTT
1 TAATTTTTTCTTAATCTAAGTTT
4536082 T
1 T
4536083 GCGCGTGAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 2 0.10
23 19 0.90
ACGTcount: A:0.26, C:0.06, G:0.02, T:0.66
Consensus pattern (23 bp):
TAATTTTTTCTTAATCTAAGTTT
Found at i:4536372 original size:30 final size:29
Alignment explanation
Indices: 4536345--4536444 Score: 105
Period size: 30 Copynumber: 3.3 Consensus size: 29
4536335 TATGTTAAAG
4536345 ATTTATTTAAGTGTAAATTAAAAGTTAATA
1 ATTTATTTAAGTGTAAATTAAAA-TTAATA
* * * *
4536375 ATTTATTAAAGTATAAATTATAAATTGAGA
1 ATTTATTTAAGTGTAAATTA-AAATTAATA
4536405 GA-TTATTTTAA-TGTAAATTTAAAATTAATA
1 -ATTTA-TTTAAGTGTAAA-TTAAAATTAATA
4536435 ATTTATTTAA
1 ATTTATTTAA
4536445 ATATAATAAA
Statistics
Matches: 57, Mismatches: 8, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
29 6 0.11
30 40 0.70
31 11 0.19
ACGTcount: A:0.47, C:0.00, G:0.08, T:0.45
Consensus pattern (29 bp):
ATTTATTTAAGTGTAAATTAAAATTAATA
Found at i:4537152 original size:3 final size:3
Alignment explanation
Indices: 4537139--4537174 Score: 63
Period size: 3 Copynumber: 11.7 Consensus size: 3
4537129 AATATACGCA
4537139 AAT ATAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
4537175 AAAAGCAAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 29 0.91
4 3 0.09
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:4537580 original size:16 final size:15
Alignment explanation
Indices: 4537555--4537585 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
4537545 ATCATTGAGA
4537555 TAATTTTAATTAAAT
1 TAATTTTAATTAAAT
4537570 TAATATTTAATTAAAT
1 TAAT-TTTAATTAAAT
4537586 ATAACAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TAATTTTAATTAAAT
Found at i:4537620 original size:22 final size:20
Alignment explanation
Indices: 4537595--4537637 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 20
4537585 TATAACAAAT
4537595 ATTTAATAAACATATATATTTA
1 ATTTAAT-AACATA-ATATTTA
*
4537617 ATTTAATAATATAATATTTA
1 ATTTAATAACATAATATTTA
4537637 A
1 A
4537638 ACTAAATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 8 0.40
21 5 0.25
22 7 0.35
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (20 bp):
ATTTAATAACATAATATTTA
Found at i:4537708 original size:9 final size:10
Alignment explanation
Indices: 4537685--4537738 Score: 67
Period size: 11 Copynumber: 5.4 Consensus size: 10
4537675 TTAAAAAATT
4537685 TTAAGTAAAA
1 TTAAGTAAAA
*
4537695 ATAA-TAAAA
1 TTAAGTAAAA
4537704 TTAATGTAAAA
1 TTAA-GTAAAA
4537715 TTAA-TAAAA
1 TTAAGTAAAA
4537724 TTAATGTAAAA
1 TTAA-GTAAAA
4537735 TTAA
1 TTAA
4537739 TTTTTTATTA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
9 17 0.45
10 3 0.08
11 18 0.47
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (10 bp):
TTAAGTAAAA
Found at i:4537714 original size:20 final size:20
Alignment explanation
Indices: 4537685--4537739 Score: 94
Period size: 20 Copynumber: 2.8 Consensus size: 20
4537675 TTAAAAAATT
*
4537685 TTAA-GTAAAAATAATAAAA
1 TTAATGTAAAATTAATAAAA
4537704 TTAATGTAAAATTAATAAAA
1 TTAATGTAAAATTAATAAAA
4537724 TTAATGTAAAATTAAT
1 TTAATGTAAAATTAAT
4537740 TTTTTATTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
19 4 0.12
20 30 0.88
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (20 bp):
TTAATGTAAAATTAATAAAA
Found at i:4537715 original size:11 final size:11
Alignment explanation
Indices: 4537699--4537739 Score: 68
Period size: 11 Copynumber: 3.9 Consensus size: 11
4537689 GTAAAAATAA
4537699 TAAAATTAATG
1 TAAAATTAATG
4537710 TAAAATTAA--
1 TAAAATTAATG
4537719 TAAAATTAATG
1 TAAAATTAATG
4537730 TAAAATTAAT
1 TAAAATTAAT
4537740 TTTTTATTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 9 0.32
11 19 0.68
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.37
Consensus pattern (11 bp):
TAAAATTAATG
Found at i:4537982 original size:12 final size:12
Alignment explanation
Indices: 4537929--4537989 Score: 54
Period size: 12 Copynumber: 5.2 Consensus size: 12
4537919 ATTTAAATTA
4537929 AATAAATATATT
1 AATAAATATATT
* * *
4537941 TATATACATATT
1 AATAAATATATT
*
4537953 AATGAATAT-TT
1 AATAAATATATT
4537964 AACTAAATATATT
1 AA-TAAATATATT
*
4537977 TATAAATA-ATT
1 AATAAATATATT
4537988 AA
1 AA
4537990 ATTTTAAGCA
Statistics
Matches: 37, Mismatches: 10, Indels: 5
0.71 0.19 0.10
Matches are distributed among these distances:
11 8 0.22
12 26 0.70
13 3 0.08
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.43
Consensus pattern (12 bp):
AATAAATATATT
Found at i:4539544 original size:28 final size:31
Alignment explanation
Indices: 4539502--4539573 Score: 89
Period size: 28 Copynumber: 2.5 Consensus size: 31
4539492 AAATAATTTT
*
4539502 ATTATTAATAATAAG-ATTATTCAATGAA-A
1 ATTAATAATAATAAGTATTATTCAATGAACA
* *
4539531 A-TAATAATAATAAGTTTTATTGAATGAACA
1 ATTAATAATAATAAGTATTATTCAATGAACA
4539561 ATTAATAA-AATAA
1 ATTAATAATAATAA
4539574 AAATTTTATT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
28 12 0.32
29 12 0.32
30 7 0.19
31 6 0.16
ACGTcount: A:0.54, C:0.03, G:0.07, T:0.36
Consensus pattern (31 bp):
ATTAATAATAATAAGTATTATTCAATGAACA
Found at i:4540809 original size:13 final size:13
Alignment explanation
Indices: 4540766--4540809 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
4540756 ATAATATCTT
* *
4540766 TAATATATAATTA
1 TAATATAAAAATA
4540779 TAATATAAAAA-A
1 TAATATAAAAATA
*
4540791 TTATATAAAAATA
1 TAATATAAAAATA
4540804 TAATAT
1 TAATAT
4540810 CTTTAGTATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
12 11 0.42
13 15 0.58
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
TAATATAAAAATA
Found at i:4542045 original size:30 final size:28
Alignment explanation
Indices: 4541994--4542051 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 28
4541984 AACTTATATT
*
4541994 CATTTTTTAATTTTTAATAATAAATAAA
1 CATTTTTTAATTTTAAATAATAAATAAA
*
4542022 CATTTTTTAATTATTAAAATAATAATTAAA
1 CATTTTTTAATT-TT-AAATAATAAATAAA
4542052 TCAAATTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 12 0.46
29 2 0.08
30 12 0.46
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (28 bp):
CATTTTTTAATTTTAAATAATAAATAAA
Found at i:4542410 original size:2 final size:2
Alignment explanation
Indices: 4542405--4542435 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
4542395 TCTCTCTCTC
4542405 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4542436 TTAATGAGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4544613 original size:24 final size:28
Alignment explanation
Indices: 4544560--4544625 Score: 68
Period size: 24 Copynumber: 2.4 Consensus size: 28
4544550 GAATAATATA
*
4544560 TTATATATATATATATGAAAACTTATTTAT
1 TTATATATATA--TATGAAAACTTAATTAT
4544590 TTATAT-TA-ATAT-AAAA-TTAATTAT
1 TTATATATATATATGAAAACTTAATTAT
*
4544614 TTAAATATATAT
1 TTATATATATAT
4544626 TTAATATAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
24 12 0.38
25 6 0.19
26 5 0.16
28 1 0.03
29 2 0.06
30 6 0.19
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (28 bp):
TTATATATATATATGAAAACTTAATTAT
Found at i:4544629 original size:20 final size:20
Alignment explanation
Indices: 4544583--4544630 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
4544573 TATGAAAACT
*
4544583 TATTTATTTATATTAATATA
1 TATTTAATTATATTAATATA
* *
4544603 AAATTAATTAT-TTAAATATA
1 TATTTAATTATATT-AATATA
4544623 TATTTAAT
1 TATTTAAT
4544631 ATAAAAAGAA
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
19 2 0.09
20 20 0.91
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
TATTTAATTATATTAATATA
Found at i:4544736 original size:18 final size:19
Alignment explanation
Indices: 4544687--4544736 Score: 63
Period size: 18 Copynumber: 2.8 Consensus size: 19
4544677 TTATCATAAT
*
4544687 TATA-TTTAA-AAATATTA
1 TATATTTTAATAAATTTTA
4544704 TATATTTT-ATAAATTTTA
1 TATATTTTAATAAATTTTA
4544722 -ATATTTTAATAAATT
1 TATATTTTAATAAATT
4544737 ATTTTATAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 12 0.41
18 17 0.59
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
TATATTTTAATAAATTTTA
Found at i:4545151 original size:3 final size:3
Alignment explanation
Indices: 4545143--4545174 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
4545133 AAAATTGATT
*
4545143 ATA ATA ATA ATA ATA ATA ATA ATA ACA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
4545175 TTTAAATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:4545434 original size:20 final size:20
Alignment explanation
Indices: 4545384--4545431 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
4545374 ATTTTAAATA
4545384 ATTAAAAAATTAAATATTTT
1 ATTAAAAAATTAAATATTTT
* *
4545404 ATTAATAAATT-ATTATTTT
1 ATTAAAAAATTAAATATTTT
4545423 ATTAAAAAA
1 ATTAAAAAA
4545432 ATTTACAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 15 0.60
20 10 0.40
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
ATTAAAAAATTAAATATTTT
Found at i:4546783 original size:8 final size:8
Alignment explanation
Indices: 4546770--4546816 Score: 57
Period size: 8 Copynumber: 6.2 Consensus size: 8
4546760 TTAAAAATAG
4546770 AAATATTA
1 AAATATTA
4546778 AAATATT-
1 AAATATTA
4546785 AAAT-TTA
1 AAATATTA
4546792 ATAATA-TA
1 A-AATATTA
4546800 AAA-ATTA
1 AAATATTA
4546807 AAATATTA
1 AAATATTA
4546815 AA
1 AA
4546817 TTTAATAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
6 3 0.09
7 12 0.35
8 19 0.56
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (8 bp):
AAATATTA
Found at i:4546791 original size:29 final size:27
Alignment explanation
Indices: 4546759--4546837 Score: 106
Period size: 29 Copynumber: 2.8 Consensus size: 27
4546749 TTACTAATAT
*
4546759 TTTAAAAATAGAAATATTAAAATATTAAA
1 TTTAATAATA-AAA-ATTAAAATATTAAA
4546788 TTTAATAATATAAAAATTAAAATATTAAA
1 TTTAAT-A-ATAAAAATTAAAATATTAAA
4546817 TTTAATAA-AAAAATTAAAATA
1 TTTAATAATAAAAATTAAAATA
4546838 AACCTTCTAT
Statistics
Matches: 47, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
26 13 0.28
27 1 0.02
28 1 0.02
29 25 0.53
30 4 0.09
31 3 0.06
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.35
Consensus pattern (27 bp):
TTTAATAATAAAAATTAAAATATTAAA
Found at i:4546812 original size:14 final size:14
Alignment explanation
Indices: 4546763--4546837 Score: 64
Period size: 14 Copynumber: 5.4 Consensus size: 14
4546753 TAATATTTTA
* *
4546763 AAAATAGAAATATT
1 AAAATATAAAAATT
* *
4546777 AAAATATTAAATTT
1 AAAATATAAAAATT
4546791 AATAATATAAAAATT
1 AA-AATATAAAAATT
*
4546806 AAAATAT-TAAATT
1 AAAATATAAAAATT
* *
4546819 -TAATAAAAAAATT
1 AAAATATAAAAATT
4546832 AAAATA
1 AAAATA
4546838 AACCTTCTAT
Statistics
Matches: 47, Mismatches: 11, Indels: 6
0.73 0.17 0.09
Matches are distributed among these distances:
12 4 0.09
13 10 0.21
14 21 0.45
15 12 0.26
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.33
Consensus pattern (14 bp):
AAAATATAAAAATT
Found at i:4549320 original size:20 final size:20
Alignment explanation
Indices: 4549269--4549321 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
4549259 TATATATTAT
*
4549269 TTTTTAAAAATAAATGAATAG
1 TTTTT-AAATTAAATGAATAG
*
4549290 -TTTTAATATTAAATGGATAG
1 TTTTTAA-ATTAAATGAATAG
4549310 TTTTTAAATTAA
1 TTTTTAAATTAA
4549322 GTGGTAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
19 2 0.07
20 20 0.71
21 6 0.21
ACGTcount: A:0.45, C:0.00, G:0.09, T:0.45
Consensus pattern (20 bp):
TTTTTAAATTAAATGAATAG
Found at i:4549543 original size:15 final size:15
Alignment explanation
Indices: 4549516--4549592 Score: 75
Period size: 16 Copynumber: 4.9 Consensus size: 15
4549506 TATAAATAGA
4549516 TATAATAATTTTTTAT
1 TATAATAA-TTTTTAT
4549532 T-TAATATATTTTTAT
1 TATAATA-ATTTTTAT
*
4549547 GTATAATAATATTTAT
1 -TATAATAATTTTTAT
*
4549563 TTTAATAATTTTTTAT
1 TATAATAA-TTTTTAT
*
4549579 TATATTATATTTTT
1 TATAATA-ATTTTT
4549593 TATAAATATA
Statistics
Matches: 51, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
15 19 0.37
16 26 0.51
17 6 0.12
ACGTcount: A:0.35, C:0.00, G:0.01, T:0.64
Consensus pattern (15 bp):
TATAATAATTTTTAT
Found at i:4549552 original size:32 final size:31
Alignment explanation
Indices: 4549516--4549595 Score: 92
Period size: 32 Copynumber: 2.5 Consensus size: 31
4549506 TATAAATAGA
4549516 TATAATAATTTTTTATTTAAT-ATATTTTTAT
1 TATAATAATTTTTTATTTAATAAT-TTTTTAT
*
4549547 GTATAATAA-TATTTATTTTAATAATTTTTTAT
1 -TATAATAATTTTTTA-TTTAATAATTTTTTAT
*
4549579 TATATTATATTTTTTAT
1 TATAATA-ATTTTTTAT
4549596 AAATATAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
31 11 0.27
32 23 0.56
33 7 0.17
ACGTcount: A:0.35, C:0.00, G:0.01, T:0.64
Consensus pattern (31 bp):
TATAATAATTTTTTATTTAATAATTTTTTAT
Found at i:4549602 original size:15 final size:15
Alignment explanation
Indices: 4549519--4549602 Score: 50
Period size: 17 Copynumber: 5.4 Consensus size: 15
4549509 AAATAGATAT
*
4549519 AATA-ATTTTTTATTT
1 AATATATTTTTTA-TA
*
4549534 AATATATTTTTATGTA
1 AATATATTTTT-TATA
4549550 TAATAATATTTATTT-T-
1 -AAT-ATATTT-TTTATA
4549566 AATA-ATTTTTTATTA
1 AATATATTTTTTA-TA
*
4549581 TATTATATTTTTTATA
1 -AATATATTTTTTATA
4549597 AATATA
1 AATATA
4549603 AAATAATAAT
Statistics
Matches: 55, Mismatches: 4, Indels: 20
0.70 0.05 0.25
Matches are distributed among these distances:
12 3 0.05
13 4 0.07
14 2 0.04
15 12 0.22
16 12 0.22
17 13 0.24
18 7 0.13
19 2 0.04
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.61
Consensus pattern (15 bp):
AATATATTTTTTATA
Found at i:4550765 original size:16 final size:16
Alignment explanation
Indices: 4550746--4550776 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
4550736 TATTTTTTAT
4550746 TTAAATTTAAATTAAG
1 TTAAATTTAAATTAAG
*
4550762 TTAAGTTTAAATTAA
1 TTAAATTTAAATTAA
4550777 TTCAAAATTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.45
Consensus pattern (16 bp):
TTAAATTTAAATTAAG
Found at i:4550797 original size:9 final size:9
Alignment explanation
Indices: 4550783--4550843 Score: 53
Period size: 9 Copynumber: 7.4 Consensus size: 9
4550773 TTAATTCAAA
4550783 ATTATATAT
1 ATTATATAT
4550792 ATTATATAT
1 ATTATATAT
4550801 A-TA-ATAT
1 ATTATATAT
4550808 A--ATATAT
1 ATTATATAT
*
4550815 ATTTTATAT
1 ATTATATAT
* *
4550824 AATA-ATAA
1 ATTATATAT
4550832 ATTATATA-
1 ATTATATAT
4550840 ATTA
1 ATTA
4550844 AAAAAAATCA
Statistics
Matches: 43, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
6 1 0.02
7 10 0.23
8 12 0.28
9 20 0.47
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (9 bp):
ATTATATAT
Found at i:4550813 original size:16 final size:16
Alignment explanation
Indices: 4550787--4550841 Score: 67
Period size: 16 Copynumber: 3.5 Consensus size: 16
4550777 TTCAAAATTA
*
4550787 TATATATTATATATAT
1 TATATAATATATATAT
* *
4550803 AATATAATATATATTT
1 TATATAATATATATAT
*
4550819 TATATAATA-ATAAAT
1 TATATAATATATATAT
4550834 TATATAAT
1 TATATAAT
4550842 TAAAAAAAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
15 12 0.36
16 21 0.64
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
TATATAATATATATAT
Found at i:4553714 original size:2 final size:2
Alignment explanation
Indices: 4553707--4553746 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
4553697 CTCCAAAAGA
4553707 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4553747 CACCTTCACT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4553854 original size:23 final size:23
Alignment explanation
Indices: 4553809--4553854 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
4553799 TTTTGAGAAC
* *
4553809 GTAAATATTTTTTTTTTGTTTTG
1 GTAAATATTTTTTTGTTGCTTTG
4553832 GTAAATATTTTTGTTGTT-CTTTG
1 GTAAATATTTTT-TTGTTGCTTTG
4553855 ATTATAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.17, C:0.02, G:0.15, T:0.65
Consensus pattern (23 bp):
GTAAATATTTTTTTGTTGCTTTG
Found at i:4553985 original size:19 final size:19
Alignment explanation
Indices: 4553950--4553999 Score: 50
Period size: 20 Copynumber: 2.6 Consensus size: 19
4553940 TGGGTTTTTT
4553950 TAAAAAGTT-TTTAATA-TA
1 TAAAAA-TTATTTAATATTA
*
4553968 TAAAAATTATTTATATATTT
1 TAAAAATTATTTA-ATATTA
*
4553988 TAAAATTTATTT
1 TAAAAATTATTT
4554000 TGTAATTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 2 0.07
18 10 0.37
19 3 0.11
20 12 0.44
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (19 bp):
TAAAAATTATTTAATATTA
Found at i:4554792 original size:26 final size:26
Alignment explanation
Indices: 4554762--4554811 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
4554752 TTAAATTTAA
*
4554762 GTTAAATACCTAACCTTACGTGTTAG
1 GTTAAATACCTAACATTACGTGTTAG
4554788 GTTAAATACCTAACATTACGTGTT
1 GTTAAATACCTAACATTACGTGTT
4554812 CATGTGCATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (26 bp):
GTTAAATACCTAACATTACGTGTTAG
Found at i:4561536 original size:33 final size:32
Alignment explanation
Indices: 4561490--4561552 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 32
4561480 TTCCCCCCAA
* *
4561490 AAAAAAATGAATAGAAAGCAAAAGGCAAAATCT
1 AAAAAAATAAATAGAAAACAAAAGG-AAAATCT
4561523 AAAAAAATAAATAGAAAACAAAAGGAAAAT
1 AAAAAAATAAATAGAAAACAAAAGGAAAAT
4561553 AGCCAGAAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
32 5 0.18
33 23 0.82
ACGTcount: A:0.70, C:0.06, G:0.13, T:0.11
Consensus pattern (32 bp):
AAAAAAATAAATAGAAAACAAAAGGAAAATCT
Found at i:4563367 original size:2 final size:2
Alignment explanation
Indices: 4563360--4563403 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
4563350 ATTTGATAAC
4563360 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4563402 AT
1 AT
4563404 GTTAATGACA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4563583 original size:11 final size:11
Alignment explanation
Indices: 4563567--4563592 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
4563557 TTATTTATAT
4563567 AAAAAAAAATA
1 AAAAAAAAATA
4563578 AAAAAAAAATA
1 AAAAAAAAATA
4563589 AAAA
1 AAAA
4563593 TTATTTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (11 bp):
AAAAAAAAATA
Found at i:4564238 original size:15 final size:15
Alignment explanation
Indices: 4564220--4564288 Score: 57
Period size: 15 Copynumber: 4.4 Consensus size: 15
4564210 TTAATTTTCT
4564220 TTTTAAAAATTTTAA
1 TTTTAAAAATTTTAA
* **
4564235 TTTTAACAATAATAA
1 TTTTAAAAATTTTAA
* *
4564250 TTTTATAAATTTAAA
1 TTTTAAAAATTTTAA
*
4564265 TATTTAACAAACTTTATA
1 T-TTTAA-AAATTTTA-A
4564283 TTTTAA
1 TTTTAA
4564289 TGTATTCATT
Statistics
Matches: 40, Mismatches: 11, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
15 23 0.57
16 4 0.10
17 11 0.28
18 2 0.05
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.49
Consensus pattern (15 bp):
TTTTAAAAATTTTAA
Found at i:4567616 original size:2 final size:2
Alignment explanation
Indices: 4567609--4567648 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
4567599 TCCAAAAAGA
*
4567609 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4567649 TTTTATATGT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4571523 original size:2 final size:2
Alignment explanation
Indices: 4571516--4571558 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
4571506 ATTGTGAGGG
4571516 AT AT AT AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4571557 AT
1 AT
4571559 GTTCAACCTC
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 39 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:4571654 original size:68 final size:69
Alignment explanation
Indices: 4571559--4571692 Score: 216
Period size: 68 Copynumber: 2.0 Consensus size: 69
4571549 ATATATATAT
* * *
4571559 GTTCAACCTCCCCTACAAATGATCATCCACCAAACAAGTTCTGACATTTTTATATTTGTCGAGTA
1 GTTCAACCTCCCCTACAAATGATCATCCACCAAACAAGTTCTGACAGTTTTATATCTCTCGAGTA
4571624 GCAA
66 GCAA
* *
4571628 GTTCAACCT-CCCTATAAATGATCATCCACCTAACAAGTTCTGACAGTTTTATATCTCTCGAGTA
1 GTTCAACCTCCCCTACAAATGATCATCCACCAAACAAGTTCTGACAGTTTTATATCTCTCGAGTA
4571692 G
66 G
4571693 TAACTTTGTA
Statistics
Matches: 60, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
68 51 0.85
69 9 0.15
ACGTcount: A:0.31, C:0.26, G:0.12, T:0.31
Consensus pattern (69 bp):
GTTCAACCTCCCCTACAAATGATCATCCACCAAACAAGTTCTGACAGTTTTATATCTCTCGAGTA
GCAA
Found at i:4571905 original size:26 final size:23
Alignment explanation
Indices: 4571859--4571905 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
4571849 TCATCGTAAT
4571859 AATAAATGGGCTACCGTATGATG
1 AATAAATGGGCTACCGTATGATG
*
4571882 AATAAATGGGCTACGGTATGATG
1 AATAAATGGGCTACCGTATGATG
4571905 A
1 A
4571906 GGTTCCATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.36, C:0.11, G:0.28, T:0.26
Consensus pattern (23 bp):
AATAAATGGGCTACCGTATGATG
Found at i:4572633 original size:16 final size:16
Alignment explanation
Indices: 4572612--4572642 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
4572602 TTTGGTTCGA
4572612 GTTATTTCGAGTTTGG
1 GTTATTTCGAGTTTGG
*
4572628 GTTATTTCGGGTTTG
1 GTTATTTCGAGTTTG
4572643 AATTATTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.06, G:0.32, T:0.52
Consensus pattern (16 bp):
GTTATTTCGAGTTTGG
Found at i:4576963 original size:2 final size:2
Alignment explanation
Indices: 4576956--4576983 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
4576946 TTCTGTTTTC
4576956 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4576984 GAGAGAGAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:4576988 original size:2 final size:2
Alignment explanation
Indices: 4576983--4577018 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
4576973 ATATATATAT
4576983 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
4577019 GGGGTATTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:4579704 original size:50 final size:47
Alignment explanation
Indices: 4579648--4579748 Score: 121
Period size: 50 Copynumber: 2.1 Consensus size: 47
4579638 GCAAAGTGAT
*
4579648 TTGATTATATTTTACTAAGCTTTGACAATTGAGAGAAATAATCGTAATTG
1 TTGATTATATTTTACTAAGCTTTGACAATCGAGAG---TAATCGTAATTG
* * ** *
4579698 TTGATTATTTTTTATTAATTTTTGACAATCGAGAGTGATCGTAATTG
1 TTGATTATATTTTACTAAGCTTTGACAATCGAGAGTAATCGTAATTG
4579745 TTGA
1 TTGA
4579749 CTATTCTTTA
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
47 15 0.33
50 30 0.67
ACGTcount: A:0.32, C:0.07, G:0.17, T:0.45
Consensus pattern (47 bp):
TTGATTATATTTTACTAAGCTTTGACAATCGAGAGTAATCGTAATTG
Found at i:4579759 original size:47 final size:49
Alignment explanation
Indices: 4579688--4579950 Score: 250
Period size: 50 Copynumber: 5.3 Consensus size: 49
4579678 GAGAGAAATA
* * * *
4579688 ATCGTAATTGTTGATTATTTTTTATTAATTTTTGACAATC-GAGA-GTG
1 ATCGTAATTGTTGACTATTCTTTATCAATCTTTGACAATCAGAGAGGTG
* *
4579735 ATCGTAATTGTTGACTATTCTTTATCAATTTTTGATAATCAAGAGAGGTG
1 ATCGTAATTGTTGACTATTCTTTATCAATCTTTGACAATC-AGAGAGGTG
* * * *
4579785 A-CTGTAATTATTGACTATTTTTTATCAATCTTCGACAATTGAGAGAGGTG
1 ATC-GTAATTGTTGACTATTCTTTATCAATCTTTGACAA-TCAGAGAGGTG
* * *
4579835 A-CGATAATTGTTGACTATTCTTCACCAACCTTTGACAATCGAGAGAGGTG
1 ATCG-TAATTGTTGACTATTCTTTATCAATCTTTGACAATC-AGAGAGGTG
* * * * *
4579885 GTCGTAATTGTTGACTATTCTTCACCAACCTTTGACAAT-AGAAAAAGGTG
1 ATCGTAATTGTTGACTATTCTTTATCAATCTTTGACAATCAG--AGAGGTG
4579935 A-CTGTAATTGTTGACT
1 ATC-GTAATTGTTGACT
4579951 CTAAGCATCT
Statistics
Matches: 185, Mismatches: 20, Indels: 19
0.83 0.09 0.08
Matches are distributed among these distances:
47 36 0.19
48 2 0.01
49 8 0.04
50 136 0.74
51 3 0.02
ACGTcount: A:0.30, C:0.13, G:0.18, T:0.39
Consensus pattern (49 bp):
ATCGTAATTGTTGACTATTCTTTATCAATCTTTGACAATCAGAGAGGTG
Found at i:4579880 original size:100 final size:99
Alignment explanation
Indices: 4579689--4579950 Score: 280
Period size: 100 Copynumber: 2.6 Consensus size: 99
4579679 AGAGAAATAA
* * * *
4579689 TCGTAATTGTTGATTATTTTTTATTAATTTTTGACAA-T-CGAGA-GTGATCGTAATTGTTGACT
1 TCGTAATTGTTGACTATTTTTTATCAATCTTTGACAATTGAGAGAGGTGA-CGTAATTGTTGACT
* * ** *
4579751 ATTCTTTATCAATTTTTGATAATCAAGAGAGGTGAC
65 ATTCTTCACCAACCTTTGACAATCAAGAGAGGTG-C
* *
4579787 T-GTAATTATTGACTATTTTTTATCAATCTTCGACAATTGAGAGAGGTGACGATAATTGTTGACT
1 TCGTAATTGTTGACTATTTTTTATCAATCTTTGACAATTGAGAGAGGTGACG-TAATTGTTGACT
* *
4579851 ATTCTTCACCAACCTTTGACAATCGAGAGAGGTGG
65 ATTCTTCACCAACCTTTGACAATCAAGAGAGGTGC
* * * * * * *
4579886 TCGTAATTGTTGACTATTCTTCACCAACCTTTGACAATAGAAAAAGGTGACTGTAATTGTTGACT
1 TCGTAATTGTTGACTATTTTTTATCAATCTTTGACAATTGAGAGAGGTGAC-GTAATTGTTGACT
4579951 CTAAGCATCT
Statistics
Matches: 136, Mismatches: 22, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
97 30 0.22
98 2 0.01
99 7 0.05
100 96 0.71
101 1 0.01
ACGTcount: A:0.29, C:0.13, G:0.18, T:0.39
Consensus pattern (99 bp):
TCGTAATTGTTGACTATTTTTTATCAATCTTTGACAATTGAGAGAGGTGACGTAATTGTTGACTA
TTCTTCACCAACCTTTGACAATCAAGAGAGGTGC
Found at i:4584392 original size:50 final size:50
Alignment explanation
Indices: 4584314--4584569 Score: 345
Period size: 50 Copynumber: 5.1 Consensus size: 50
4584304 ACAAAGTGAT
* *
4584314 TTGACTATTCTTCACCAACCTTTAACAATCGAAAGAGGTTGCCGTAATTG
1 TTGACTATTCTTCACCAACCTTTGACAATCGAAAGAGGTGGCCGTAATTG
*
4584364 TTGACTATTCTTTACCAACCTTTGACAATCGAGAA-AGGTGGCCGTAATTG
1 TTGACTATTCTTCACCAACCTTTGACAATCGA-AAGAGGTGGCCGTAATTG
* * * * *
4584414 TTGACTACTCTTCACCAACCTTTGACTATAGAGAGAGGTGGCCCTAATTG
1 TTGACTATTCTTCACCAACCTTTGACAATCGAAAGAGGTGGCCGTAATTG
* * * *
4584464 TTGACTATTCTTCATCAACCTTTGACAATCGAGAGAAGTGGTCGTAATTG
1 TTGACTATTCTTCACCAACCTTTGACAATCGAAAGAGGTGGCCGTAATTG
* * *
4584514 TTGACTATTTTTCACCAACCTTTGACAATAGAGAA-AGGTGACCGTAATTG
1 TTGACTATTCTTCACCAACCTTTGACAATCGA-AAGAGGTGGCCGTAATTG
4584564 TTGACT
1 TTGACT
4584570 CTGAGCATCT
Statistics
Matches: 180, Mismatches: 23, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
49 1 0.01
50 176 0.98
51 3 0.02
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (50 bp):
TTGACTATTCTTCACCAACCTTTGACAATCGAAAGAGGTGGCCGTAATTG
Found at i:4588395 original size:28 final size:29
Alignment explanation
Indices: 4588330--4588395 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 29
4588320 ATTTAATTTT
* * *
4588330 TTTTATAATTAAAGTTACCAAAGTTTAATA
1 TTTTATTATTAAAATTA-CAAAGTTTAACA
* *
4588360 CTTAATTATTAAAATTA-AAAGTTTAACA
1 TTTTATTATTAAAATTACAAAGTTTAACA
4588388 TTTTATTA
1 TTTTATTA
4588396 ACAGATCACA
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
28 16 0.55
30 13 0.45
ACGTcount: A:0.44, C:0.06, G:0.05, T:0.45
Consensus pattern (29 bp):
TTTTATTATTAAAATTACAAAGTTTAACA
Found at i:4591728 original size:15 final size:16
Alignment explanation
Indices: 4591698--4591730 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
4591688 TTATTATCTT
4591698 TATATAGTATTGAATA
1 TATATAGTATTGAATA
*
4591714 TATATA-TATTTAATA
1 TATATAGTATTGAATA
4591729 TA
1 TA
4591731 ATTTTTATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.48
Consensus pattern (16 bp):
TATATAGTATTGAATA
Found at i:4591930 original size:26 final size:24
Alignment explanation
Indices: 4591888--4591935 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
4591878 ATTATTCTTT
4591888 ATTTTTGGATATAATAAATAATTTC
1 ATTTTTGGATATAAT-AATAATTTC
* *
4591913 ATTTTTGTATTATTATAATAATT
1 ATTTTTGGA-TATAATAATAATT
4591936 GATATTTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 15 0.75
26 5 0.25
ACGTcount: A:0.38, C:0.02, G:0.06, T:0.54
Consensus pattern (24 bp):
ATTTTTGGATATAATAATAATTTC
Found at i:4592187 original size:69 final size:72
Alignment explanation
Indices: 4592076--4592254 Score: 267
Period size: 69 Copynumber: 2.5 Consensus size: 72
4592066 AAATGCCACG
*
4592076 AGGTAGCAATAAAAAACAATTTGATATTTCATATATATATATATATATATA-AT-AT-CTACAAG
1 AGGTAGCAATAAAAAACAATTTGATATATCATATATATATATATATATATATATGATACTACAAG
4592138 GTATGCA
66 GTATGCA
* * * * *
4592145 AGGTAGAAATAAAAAGCAATTTGATATATCATATATTTATATATATATATATATGATATTATAAG
1 AGGTAGCAATAAAAAACAATTTGATATATCATATATATATATATATATATATATGATACTACAAG
4592210 GTATGCA
66 GTATGCA
*
4592217 AGGTAGCAATAAAAAACAATTTGATATATAATAT-TATA
1 AGGTAGCAATAAAAAACAATTTGATATATCATATATATA
4592255 AGGTACATAT
Statistics
Matches: 97, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
69 47 0.48
70 2 0.02
71 5 0.05
72 43 0.44
ACGTcount: A:0.47, C:0.06, G:0.11, T:0.35
Consensus pattern (72 bp):
AGGTAGCAATAAAAAACAATTTGATATATCATATATATATATATATATATATATGATACTACAAG
GTATGCA
Found at i:4592240 original size:72 final size:69
Alignment explanation
Indices: 4592076--4592254 Score: 263
Period size: 72 Copynumber: 2.6 Consensus size: 69
4592066 AAATGCCACG
*
4592076 AGGTAGCAATAAAAAACAATTTGATATTTCATATATATATATATATATATAATATCTACAAGGTA
1 AGGTAGCAATAAAAAACAATTTGATATATCATATATATATATATATATATAATATCTACAAGGTA
4592141 TGCA
66 TGCA
* * *
4592145 AGGTAGAAATAAAAAGCAATTTGATATATCATATATTTATATATATATATATATGATAT-TATAA
1 AGGTAGCAATAAAAAACAATTTGATATATCATATA--TATATATATATATATA--ATATCTACAA
4592209 GGTATGCA
62 GGTATGCA
*
4592217 AGGTAGCAATAAAAAACAATTTGATATATAATAT-TATA
1 AGGTAGCAATAAAAAACAATTTGATATATCATATATATA
4592255 AGGTACATAT
Statistics
Matches: 99, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
69 36 0.36
71 16 0.16
72 43 0.43
73 4 0.04
ACGTcount: A:0.47, C:0.06, G:0.11, T:0.35
Consensus pattern (69 bp):
AGGTAGCAATAAAAAACAATTTGATATATCATATATATATATATATATATAATATCTACAAGGTA
TGCA
Done.