Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold25
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9553305
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 6276 characters in sequence are not A, C, G, or T
File 39 of 56
Found at i:6740351 original size:32 final size:33
Alignment explanation
Indices: 6740310--6740373 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
6740300 TAGCCAAACT
**
6740310 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACCAAAAATTGTATCGATACAA
6740342 TGTATCGATACACCAAAAATTGTATCGATACA
1 TGTATCGATACACCAAAAATTGTATCGATACA
6740374 TTGGCTTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACCAAAAATTGTATCGATACAA
Found at i:6742606 original size:21 final size:21
Alignment explanation
Indices: 6742573--6742622 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
6742563 TTGCAAGTTG
*
6742573 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCT-ATGA
*
6742595 AAATAATG-AGTTAGCTATGAA
1 AAATAAAGAAGTTAGCTATG-A
6742616 AAATAAA
1 AAATAAA
6742623 AACTTGCATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 3 0.12
21 14 0.58
22 7 0.29
ACGTcount: A:0.54, C:0.04, G:0.18, T:0.24
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTATGA
Found at i:6746533 original size:13 final size:13
Alignment explanation
Indices: 6746515--6746540 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6746505 ACATTTTTCT
6746515 TTGTATCGATACA
1 TTGTATCGATACA
6746528 TTGTATCGATACA
1 TTGTATCGATACA
6746541 GGGTGATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:6748890 original size:13 final size:13
Alignment explanation
Indices: 6748872--6748897 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6748862 TGCACCAAGT
6748872 ATGTATCGATACA
1 ATGTATCGATACA
6748885 ATGTATCGATACA
1 ATGTATCGATACA
6748898 CCAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:6748894 original size:32 final size:33
Alignment explanation
Indices: 6748854--6748917 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
6748844 TAGCCAAACT
* **
6748854 TGTATCGATGCACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACCAAAAATTGTATCGATACAA
6748886 TGTATCGATACACCAAAAATTGTATCGATACA
1 TGTATCGATACACCAAAAATTGTATCGATACA
6748918 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACCAAAAATTGTATCGATACAA
Found at i:6751587 original size:146 final size:144
Alignment explanation
Indices: 6751308--6751592 Score: 333
Period size: 146 Copynumber: 2.0 Consensus size: 144
6751298 TTTTTTGAAA
* * *
6751308 TTTTTTTCAAAATACGGTATTTTCTACTCTGTAAATTCTTTTGAGTGGTTTTCCTCAGTTTTCAA
1 TTTTTTTCAAAATACGGTATTTTCTACTCCGTAAATTCTTTTGAGTGATTTTCATCAGTTTTCAA
* * *** *
6751373 TTTTTAAAATTCATAAAACATTATCATTTATTTCAATTAATTCATTTTCATGAGTTTTGAATTTT
66 TTTTTAAAATTCATAAAACATTATCATTTATTTCAATTAACTAATTTTCA-GAAAATTGAATTAT
*
6751438 TTCCTTAAAATGCCC
130 TTCCATAAAATGCCC
* * *
6751453 TTTTTTTCAAAATACGGTATTTTCTACTCCGTAAATT-TTTTCGAGTGAATTTTTATTAGTTTTT
1 TTTTTTTCAAAATACGGTATTTTCTACTCCGTAAATTCTTTT-GAGTG-ATTTTCATCAGTTTTC
* * * * *
6751517 AATTTTTAAAATTTATCAAATATTATTATTTATTTCATATTAACTAAGTTTTCA-AAAATT-CAT
64 AATTTTTAAAATTCATAAAACATTATCATTTATTTCA-ATTAACTAA-TTTTCAGAAAATTGAAT
6751580 TCATTTCCATAAA
127 T-ATTTCCATAAA
6751593 TTGTGAATTT
Statistics
Matches: 117, Mismatches: 18, Indels: 9
0.81 0.12 0.06
Matches are distributed among these distances:
144 4 0.03
145 44 0.38
146 56 0.48
147 7 0.06
148 6 0.05
ACGTcount: A:0.30, C:0.13, G:0.07, T:0.50
Consensus pattern (144 bp):
TTTTTTTCAAAATACGGTATTTTCTACTCCGTAAATTCTTTTGAGTGATTTTCATCAGTTTTCAA
TTTTTAAAATTCATAAAACATTATCATTTATTTCAATTAACTAATTTTCAGAAAATTGAATTATT
TCCATAAAATGCCC
Found at i:6752268 original size:12 final size:12
Alignment explanation
Indices: 6752251--6752296 Score: 60
Period size: 12 Copynumber: 3.9 Consensus size: 12
6752241 TAGCTGAAAG
6752251 AAGAGAGAAAAA
1 AAGAGAGAAAAA
6752263 AAGAGAGAGAAAA
1 AAGAGAGA-AAAA
6752276 AA-AGAGAAAAA
1 AAGAGAGAAAAA
*
6752287 TAGA-AGAAAA
1 AAGAGAGAAAA
6752297 TAGGTAGAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
11 11 0.35
12 14 0.45
13 6 0.19
ACGTcount: A:0.74, C:0.00, G:0.24, T:0.02
Consensus pattern (12 bp):
AAGAGAGAAAAA
Found at i:6752271 original size:14 final size:14
Alignment explanation
Indices: 6752247--6752282 Score: 63
Period size: 14 Copynumber: 2.5 Consensus size: 14
6752237 AGTTTAGCTG
6752247 AAAGAAGAGAGAAAA
1 AAAG-AGAGAGAAAA
6752262 AAAGAGAGAGAAAA
1 AAAGAGAGAGAAAA
6752276 AAAGAGA
1 AAAGAGA
6752283 AAAATAGAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 17 0.81
15 4 0.19
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (14 bp):
AAAGAGAGAGAAAA
Found at i:6753389 original size:163 final size:162
Alignment explanation
Indices: 6753215--6753695 Score: 678
Period size: 163 Copynumber: 3.0 Consensus size: 162
6753205 AAAATTAAAC
* *
6753215 AATATTTATTTTTTCTAATCTTTTATATTCCTATGGGCATCCGTAGGGGTATACAAGATTTCAAA
1 AATATTTATTTTTTCTAATCTTTTATATTCCTATGGGCATTCGTAGGGGTATAAAAGATTTCAAA
* * * * * *
6753280 AACCCTTCATATTCTTTCGGGCTTCCATTACGGTACGAAATGATATTTTCAAAAATAAATAAAAA
66 AATCTTTCGTATTCTTTCGGGCTTCTATTAGGGTACGAAATGGTATTTTCAAAAATAAAT-AAAA
*
6753345 TTAAATTAAATTAATACTTTTGGGATAAATTCT
130 TTAAATTAAATTAATACTTTTGAGATAAATTCT
*
6753378 AATATTTATTTTTT-TAAATCTTTTATATTCCTATGGGCATTTGTAGGGGTATAAAAGATTTCAA
1 AATATTTATTTTTTCT-AATCTTTTATATTCCTATGGGCATTCGTAGGGGTATAAAAGATTTCAA
* ** * *
6753442 AAATCTTTTGTATTCTTTCAAGCTTCTATTAGGGTAAGAAATGGTATTTTCAAAAATAAATTAAA
65 AAATCTTTCGTATTCTTTCGGGCTTCTATTAGGGTACGAAATGGTATTTTCAAAAATAAATAAAA
*
6753507 TTAAATTAAATTAGTA-TTCTTGAGATAAATTCT
130 TTAAATTAAATTAATACTT-TTGAGATAAATTCT
*
6753540 AATATTTATTTTTTTCTAATCTTTTATATTCCTATAGGGCATTGGTAGGGGTATAAAAGATTTCA
1 AATATTTA-TTTTTTCTAATCTTTTATATTCCTAT-GGGCATTCGTAGGGGTATAAAAGATTTCA
* * * * *
6753605 AAATTTTTTCGTATTTTTTCGGGCTTCTATTAGGGTACGAAATGGTATTTTTAAAAGTAAATAAA
64 AAAATCTTTCGTATTCTTTCGGGCTTCTATTAGGGTACGAAATGGTATTTTCAAAAATAAATAAA
* * *
6753670 ATGAAATTGAATTAATACTTTCGAGA
129 ATTAAATTAAATTAATACTTTTGAGA
6753696 AAGATTTCAA
Statistics
Matches: 281, Mismatches: 31, Indels: 11
0.87 0.10 0.03
Matches are distributed among these distances:
161 2 0.01
162 40 0.14
163 134 0.48
164 103 0.37
165 2 0.01
ACGTcount: A:0.35, C:0.10, G:0.13, T:0.42
Consensus pattern (162 bp):
AATATTTATTTTTTCTAATCTTTTATATTCCTATGGGCATTCGTAGGGGTATAAAAGATTTCAAA
AATCTTTCGTATTCTTTCGGGCTTCTATTAGGGTACGAAATGGTATTTTCAAAAATAAATAAAAT
TAAATTAAATTAATACTTTTGAGATAAATTCT
Found at i:6754198 original size:155 final size:155
Alignment explanation
Indices: 6753916--6754288 Score: 466
Period size: 155 Copynumber: 2.4 Consensus size: 155
6753906 GCATTATCCC
* * *
6753916 AAGTCCTTTAGGGGTATCGGGTACTTTTACG-CTGAAGGAATCCCCTAGAGGCATTTTCATAATT
1 AAGTCCTTTAGGGGTATAGGGTACTTTTACGTC-GAAGGTATCCCCTAGAGGCATTTTCATAATA
* *
6753980 TTTTAGAACTGAGTCTTAGGCTATCACCGAGTTTGCTTTTATGCTGAAGGTAGATATTGAGGATA
65 TCTTAGAACTGAGTCTTAGGCTATCACCGAGTTTGCTTTTACGCTGAAGGTAGATATTGAGGATA
**
6754045 GGTTCATCTCATCTATTATCCTCTTT
130 GGTTCATCTCATCTAAAATCCTCTTT
* * * **
6754071 AAGTCCTTTAGGGGTATAGGGTATTTTTATGTCGAAGGTATCCCCTATAGGCATTTTGGTAATAT
1 AAGTCCTTTAGGGGTATAGGGTACTTTTACGTCGAAGGTATCCCCTAGAGGCATTTTCATAATAT
* * * * * *
6754136 CTTAGAA-TCGAGTCTTAGGTTGTCACCGGGTTTGCTTTTACG-TCGAAGGTGGGTATTTAGGAT
66 CTTAGAACT-GAGTCTTAGGCTATCACCGAGTTTGCTTTTACGCT-GAAGGTAGATATTGAGGAT
* * * *
6754199 AGGTTCATCTCTTTTAAAATCTTTTTT
129 AGGTTCATCTCATCTAAAATCCTCTTT
**
6754226 AAGTCCTTTAGGGGTATCA-GGTACTTTTACGTCGAAGGTATCCTTTAGAGGCATTTTCATAAT
1 AAGTCCTTTAGGGGTAT-AGGGTACTTTTACGTCGAAGGTATCCCCTAGAGGCATTTTCATAAT
6754289 TTTTCTTGAA
Statistics
Matches: 185, Mismatches: 29, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
154 2 0.01
155 181 0.98
156 2 0.01
ACGTcount: A:0.23, C:0.16, G:0.23, T:0.39
Consensus pattern (155 bp):
AAGTCCTTTAGGGGTATAGGGTACTTTTACGTCGAAGGTATCCCCTAGAGGCATTTTCATAATAT
CTTAGAACTGAGTCTTAGGCTATCACCGAGTTTGCTTTTACGCTGAAGGTAGATATTGAGGATAG
GTTCATCTCATCTAAAATCCTCTTT
Found at i:6767285 original size:52 final size:52
Alignment explanation
Indices: 6767215--6767335 Score: 206
Period size: 52 Copynumber: 2.3 Consensus size: 52
6767205 GAAAATTTAT
*
6767215 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
* * *
6767267 TTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTTC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
6767319 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
6767336 AAGATCGGTG
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 64 1.00
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.36
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:6767348 original size:52 final size:52
Alignment explanation
Indices: 6767215--6767355 Score: 178
Period size: 52 Copynumber: 2.7 Consensus size: 52
6767205 GAAAATTTAT
*
6767215 CTGCATGTATCGATACATTTA-ATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TAAGATAGTGTATCGATACATCTGGGCAAATTTGC
* *** * *
6767267 TTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTTC
1 CTGCATGTATCGATACATAAGATAGTGTATCGATACATCTGGGCAAATTTGC
*
6767319 CTGCATGTATCGATACA-AAGATCGGTGTATCGATACA
1 CTGCATGTATCGATACATAAGAT-AGTGTATCGATACA
6767356 ATGTATCGAT
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
51 4 0.05
52 73 0.95
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATAAGATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:6767362 original size:13 final size:13
Alignment explanation
Indices: 6767344--6767368 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6767334 CAAAGATCGG
6767344 TGTATCGATACAA
1 TGTATCGATACAA
6767357 TGTATCGATACA
1 TGTATCGATACA
6767369 TTTAAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:6767452 original size:33 final size:33
Alignment explanation
Indices: 6767410--6767476 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
6767400 AGTAGCTTAA
6767410 ATTGTATCGATACAAAAAAATATGTATCTATAC
1 ATTGTATCGATACAAAAAAATATGTATCTATAC
* ***
6767443 ATTGTATCGATACAACATTTTATGTATCTATAC
1 ATTGTATCGATACAAAAAAATATGTATCTATAC
6767476 A
1 A
6767477 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.37
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCTATAC
Found at i:6768361 original size:67 final size:68
Alignment explanation
Indices: 6768239--6768365 Score: 184
Period size: 67 Copynumber: 1.9 Consensus size: 68
6768229 ATTGGGTTTT
* * *
6768239 AAAGATGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATG
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGAAGATG
6768304 AGA
66 AGA
* * * *
6768307 AAAG-TGATAAAGATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGA
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGA
6768366 GAAAAAGGAT
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
67 48 0.92
68 4 0.08
ACGTcount: A:0.39, C:0.13, G:0.25, T:0.24
Consensus pattern (68 bp):
AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGAAGATG
AGA
Found at i:6768587 original size:49 final size:49
Alignment explanation
Indices: 6768378--6769034 Score: 902
Period size: 49 Copynumber: 13.7 Consensus size: 49
6768368 AAAAGGATGT
* * *
6768378 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGT
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGC
* *
6768430 CAATATGCTGATTCAAAGCCAGCTATATTGGACTT----A--AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
6768473 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTG-AGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
6768521 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * *
6768570 GAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * *
6768619 CAATATGCTGATTCAAGGCCAGCTAAACTGGACTTAATGGTGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
6768668 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
6768717 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
6768766 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
6768809 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
6768858 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
6768907 CAATATGCTGATTCAAGGCCAGCTATATTGGGCTT----A--AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
6768950 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
6768999 CAATATGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 CAATATGCTGATTCAAGGCCAGCTACATTGGACTTA
6769035 GAAGGGTTGC
Statistics
Matches: 541, Mismatches: 45, Indels: 41
0.86 0.07 0.07
Matches are distributed among these distances:
43 116 0.21
45 2 0.00
47 2 0.00
48 48 0.09
49 342 0.63
52 31 0.06
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (49 bp):
CAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
Found at i:6768864 original size:141 final size:142
Alignment explanation
Indices: 6768368--6769034 Score: 990
Period size: 141 Copynumber: 4.7 Consensus size: 142
6768358 AAAGATGAGA
* * *
6768368 AAAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGTCAA
1 AAAAGG-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGCCAA
* *
6768433 TATGCTGATTCAAAGCCAGCTATATTGGACTT----A--AAGGTGCCAATGTGCTGATTCAAGGC
62 TATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGC
*
6768492 CAGCTACATTGGACTT
127 CAGCTATATTGGACTT
*
6768508 AAAGGTGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCGAA
1 AAA----AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAA
* * * *
6768573 TGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGC
62 TATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGC
* *
6768638 CAGCTAAACTGGACTT
127 CAGCTATATTGGACTT
* *
6768654 AATGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCA
1 AA-----AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCA
6768719 ATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGG
61 ATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGG
*
6768784 CCAGCGATATTGGACTT
126 CCAGCTATATTGGACTT
6768801 -AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATG
1 AAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATG
*
6768865 CTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGC
66 CTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGC
*
6768930 TATATTGGGCTT
131 TATATTGGACTT
6768942 -AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATG
1 AAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATG
*
6769006 CTGATTCAAGGCCAGCTATATTGGGCTTA
66 CTGATTCAAGGCCAGCTATATTGGACTTA
6769035 GAAGGGTTGC
Statistics
Matches: 484, Mismatches: 28, Indels: 29
0.89 0.05 0.05
Matches are distributed among these distances:
140 39 0.08
141 226 0.47
142 1 0.00
143 42 0.09
144 4 0.01
146 42 0.09
147 129 0.27
151 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (142 bp):
AAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATG
CTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGC
TATATTGGACTT
Found at i:6769078 original size:33 final size:33
Alignment explanation
Indices: 6769034--6769154 Score: 201
Period size: 33 Copynumber: 3.7 Consensus size: 33
6769024 TATTGGGCTT
*
6769034 AGAAGGGTTGCCACCGACTTATGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
*
6769067 AGAATGGTTGCCACCGACTTGTGTGGGCTTT-G
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
6769099 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
6769132 AAGAA-GGTTGCCACCGACTTGTG
1 -AGAAGGGTTGCCACCGACTTGTG
6769155 GACTTAAAAG
Statistics
Matches: 83, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
32 31 0.37
33 48 0.58
34 4 0.05
ACGTcount: A:0.20, C:0.19, G:0.34, T:0.27
Consensus pattern (33 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
Found at i:6769114 original size:65 final size:63
Alignment explanation
Indices: 6769027--6769154 Score: 213
Period size: 65 Copynumber: 2.0 Consensus size: 63
6769017 CCAGCTATAT
6769027 TGGGCTTAGAAGGGTTGCCACCGACTTATGTGGGCTTTAG-AGAATGGTTGCCACCGACTTGTG
1 TGGGCTTAGAAGGGTTGCCACCGACTTATGTGGGCTTTAGAAGAA-GGTTGCCACCGACTTGTG
*
6769090 TGGGCTTTGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAGAAGGTTGCCACCGACTTGTG
1 TGGGC-TT-AGAAGGGTTGCCACCGACTTATGTGGGCTTTAGAAGAAGGTTGCCACCGACTTGTG
6769155 GACTTAAAAG
Statistics
Matches: 61, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
63 5 0.08
64 2 0.03
65 50 0.82
66 4 0.07
ACGTcount: A:0.19, C:0.19, G:0.34, T:0.28
Consensus pattern (63 bp):
TGGGCTTAGAAGGGTTGCCACCGACTTATGTGGGCTTTAGAAGAAGGTTGCCACCGACTTGTG
Found at i:6769177 original size:33 final size:33
Alignment explanation
Indices: 6769140--6769202 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
6769130 AGAAGAAGGT
6769140 TGCCACCG-ACTTGTGGACTTAAAAGGAAAAGAG
1 TGCCA-CGTACTTGTGGACTTAAAAGGAAAAGAG
* * *
6769173 TGCCACGTAGTTGTGGGCTTTAAAGGAAAA
1 TGCCACGTACTTGTGGACTTAAAAGGAAAA
6769203 AAGGGTGCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 2 0.08
33 24 0.92
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (33 bp):
TGCCACGTACTTGTGGACTTAAAAGGAAAAGAG
Found at i:6769212 original size:35 final size:33
Alignment explanation
Indices: 6769140--6769226 Score: 93
Period size: 35 Copynumber: 2.6 Consensus size: 33
6769130 AGAAGAAGGT
* *
6769140 TGCCACCGACTTGTGGACTTAAAAGGAAAAGAG
1 TGCCACGGAGTTGTGGACTTAAAAGGAAAAGAG
* * * *
6769173 TGCCACGTAGTTGTGGGCTTTAAAGGAAAAAAGGG
1 TGCCACGGAGTTGTGGACTTAAAAGG--AAAAGAG
*
6769208 TGCCACGGAGTCGTGGACT
1 TGCCACGGAGTTGTGGACT
6769227 AAAGGGTGCC
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
33 21 0.49
35 22 0.51
ACGTcount: A:0.30, C:0.17, G:0.32, T:0.21
Consensus pattern (33 bp):
TGCCACGGAGTTGTGGACTTAAAAGGAAAAGAG
Found at i:6769236 original size:25 final size:24
Alignment explanation
Indices: 6769202--6769271 Score: 85
Period size: 25 Copynumber: 3.0 Consensus size: 24
6769192 TTAAAGGAAA
6769202 AAAGGGTGCCACGGAGTCGTGGACT
1 AAAGGGTGCCACGGAGT-GTGGACT
6769227 AAAGGGTGCCAC-GAGT-TGG-CT
1 AAAGGGTGCCACGGAGTGTGGACT
*
6769248 -AACGGTGCCACGGAGTTGTGGACT
1 AAAGGGTGCCACGGAG-TGTGGACT
6769272 TAGAAGGAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
20 10 0.25
21 5 0.12
22 4 0.10
23 3 0.08
24 6 0.15
25 12 0.30
ACGTcount: A:0.23, C:0.20, G:0.39, T:0.19
Consensus pattern (24 bp):
AAAGGGTGCCACGGAGTGTGGACT
Found at i:6769348 original size:113 final size:111
Alignment explanation
Indices: 6769140--6769431 Score: 281
Period size: 120 Copynumber: 2.5 Consensus size: 111
6769130 AGAAGAAGGT
* * *
6769140 TGCCACCGACTTGTGGACTTAAAAGGAAAAGAGTGCCACGTAGTTGTGGGCTTTAAAGGAAAAAA
1 TGCCACGGAGTTGTGGACTT-AAAGGAAAAGAGTGCCACGAAGTTGTGGGCTTT-------AAAA
* *
6769205 GGGTGCCACGGAGTCGTGGACTAAAGGGTGCCAC-GAG-T-TGG-C-T-AACGG
58 GGGTGCCACGAAGTCGTGGACTAAAAGGTGCCACTGAGTTGTGGACTTAAACGG
6769253 TGCCACGGAGTTGTGGACTTAGAAGGAAAACGAGTGCCACGAAGTTGTGGGCTTTAAAAGGGTGC
1 TGCCACGGAGTTGTGGACTTA-AAGGAAAA-GAGTGCCACGAAGTTGTGGGCTTTAAAAGGGTGC
* *
6769318 CACGAAGTTGTGGACTTTGATGAGAAGGTGCCACTGAGTTGTGGACTTAAAAGGG
64 CACGAAGTCGTGGAC--T-A--A-AAGGTGCCACTGAGTTGTGGACTT-AAACGG
* * *
6769373 TGCCACGGAGTTGTGGGCTTAAACGGGAAAAGAGTGCCACGGAGCTGTGGGCTTTAAAA
1 TGCCACGGAGTTGTGGACTTAAA--GGAAAAGAGTGCCACGAAGTTGTGGGCTTTAAAA
6769432 AGAAAAAGGT
Statistics
Matches: 152, Mismatches: 10, Indels: 27
0.80 0.05 0.14
Matches are distributed among these distances:
107 23 0.15
109 1 0.01
110 1 0.01
112 2 0.01
113 35 0.23
114 26 0.17
115 1 0.01
116 3 0.02
117 1 0.01
118 1 0.01
119 2 0.01
120 50 0.33
121 6 0.04
ACGTcount: A:0.28, C:0.16, G:0.35, T:0.21
Consensus pattern (111 bp):
TGCCACGGAGTTGTGGACTTAAAGGAAAAGAGTGCCACGAAGTTGTGGGCTTTAAAAGGGTGCCA
CGAAGTCGTGGACTAAAAGGTGCCACTGAGTTGTGGACTTAAACGG
Found at i:6769569 original size:31 final size:31
Alignment explanation
Indices: 6769251--6769748 Score: 307
Period size: 34 Copynumber: 15.7 Consensus size: 31
6769241 GTTGGCTAAC
*
6769251 GGTGCCACGGAGTTGTGGACTTAGAAGGAA-AA
1 GGTGCCACGGAGTTGTGGACTTTGAA--AAGAA
* *
6769283 CGAGTGCCACGAAGTTGTGGGCTTT-AAAAG--
1 -G-GTGCCACGGAGTTGTGGACTTTGAAAAGAA
* **
6769313 GGTGCCACGAAGTTGTGGACTTTGATGAGAA
1 GGTGCCACGGAGTTGTGGACTTTGAAAAGAA
*
6769344 GGTGCCACTGAGTTGTGGAC-TT-AAAAG--
1 GGTGCCACGGAGTTGTGGACTTTGAAAAGAA
* *
6769371 GGTGCCACGGAGTTGTGGGC-TT-AAACGGGAAAA
1 GGTGCCACGGAGTTGTGGACTTTGAAA----AGAA
* * *
6769404 GAGTGCCACGGAGCTGTGGGCTTTAAAAAGAAAAA
1 G-GTGCCACGGAGTTGTGGACTTTGAAAAG---AA
* *
6769439 GGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAA
1 GGTGCCACGGAGTTGTGGACTTTGAAAAG---AA
6769473 GGTGCCACGGAGTTGTGGACTTAAAGATGAAAA-AA
1 GGTGCCACGGAGTTGTGGACTT-----TGAAAAGAA
*
6769508 -GTGCCACGGAGTTGTGGGC-TT-AAAAG--
1 GGTGCCACGGAGTTGTGGACTTTGAAAAGAA
6769534 GGTGCCACGGAGTTGTAGG-CTTTGAAAAGAA
1 GGTGCCACGGAGTTGT-GGACTTTGAAAAGAA
* *
6769565 GGTGCCACAGAGTCGTGGACTTT-AAAAGGGAAAAA
1 GGTGCCACGGAGTTGTGGACTTTGAAAA--G---AA
* *
6769600 GAGTGCCACGGAGTTATGGGCTTTGAAAAGAA
1 G-GTGCCACGGAGTTGTGGACTTTGAAAAGAA
* **
6769632 GGTGCCACGGAGTCGTGGACTTTGAGCAG-A
1 GGTGCCACGGAGTTGTGGACTTTGAAAAGAA
* * *
6769662 GATTGCCACTGAGTCGTGGACTTTGAAGAA-AA
1 G-GTGCCACGGAGTTGTGGACTTTGAA-AAGAA
* * * *
6769694 TGATGCCACTGAGTCGTGGACTTTGAGAAGAA
1 -GGTGCCACGGAGTTGTGGACTTTGAAAAGAA
**
6769726 GGTGCCACGGAGTCATGGACTTT
1 GGTGCCACGGAGTTGTGGACTTT
6769749 AAGAAGGTAT
Statistics
Matches: 384, Mismatches: 39, Indels: 86
0.75 0.08 0.17
Matches are distributed among these distances:
27 43 0.11
28 26 0.07
29 12 0.03
30 10 0.03
31 106 0.28
32 32 0.08
33 6 0.02
34 108 0.28
35 11 0.03
36 21 0.05
37 4 0.01
39 5 0.01
ACGTcount: A:0.30, C:0.15, G:0.34, T:0.22
Consensus pattern (31 bp):
GGTGCCACGGAGTTGTGGACTTTGAAAAGAA
Found at i:6769637 original size:67 final size:67
Alignment explanation
Indices: 6769529--6769654 Score: 216
Period size: 67 Copynumber: 1.9 Consensus size: 67
6769519 TTGTGGGCTT
* *
6769529 AAAAGGGTGCCACGGAGTTGTAGGCTTTGAAAAGAAGGTGCCACAGAGTCGTGGACTTTAAAAGG
1 AAAAGAGTGCCACGGAGTTATAGGCTTTGAAAAGAAGGTGCCACAGAGTCGTGGACTTTAAAAGG
6769594 GA
66 GA
* *
6769596 AAAAGAGTGCCACGGAGTTATGGGCTTTGAAAAGAAGGTGCCACGGAGTCGTGGACTTT
1 AAAAGAGTGCCACGGAGTTATAGGCTTTGAAAAGAAGGTGCCACAGAGTCGTGGACTTT
6769655 GAGCAGAGAT
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
67 55 1.00
ACGTcount: A:0.31, C:0.14, G:0.34, T:0.21
Consensus pattern (67 bp):
AAAAGAGTGCCACGGAGTTATAGGCTTTGAAAAGAAGGTGCCACAGAGTCGTGGACTTTAAAAGG
GA
Found at i:6769711 original size:63 final size:62
Alignment explanation
Indices: 6769602--6769753 Score: 175
Period size: 63 Copynumber: 2.4 Consensus size: 62
6769592 GGGAAAAAGA
* * * *
6769602 GTGCCACGGAGTTATGGGCTTTGAA-AAGAA-GGTGCCACGGAGTCGTGGACTTTGAGCAG-AG
1 GTGCCACGGAGTCATGGACTTT-AAGAA-AATGATGCCACGGAGTCGTGGACTTTGAGAAGAAG
* * * *
6769663 ATTGCCACTGAGTCGTGGACTTTGAAGAAAATGATGCCACTGAGTCGTGGACTTTGAGAAGAAG
1 -GTGCCACGGAGTCATGGACTTT-AAGAAAATGATGCCACGGAGTCGTGGACTTTGAGAAGAAG
6769727 GTGCCACGGAGTCATGGACTTTAAGAA
1 GTGCCACGGAGTCATGGACTTTAAGAA
6769754 GGTATTTGAC
Statistics
Matches: 76, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
62 27 0.36
63 47 0.62
64 2 0.03
ACGTcount: A:0.28, C:0.16, G:0.33, T:0.23
Consensus pattern (62 bp):
GTGCCACGGAGTCATGGACTTTAAGAAAATGATGCCACGGAGTCGTGGACTTTGAGAAGAAG
Found at i:6769745 original size:94 final size:97
Alignment explanation
Indices: 6769475--6769748 Score: 255
Period size: 94 Copynumber: 2.9 Consensus size: 97
6769465 AAGAAAAAGG
* * * ** *
6769475 TGCCACGGAGTTGTGGAC-TTAAAGATGAAAAA-AGTGCCACGGAGTTGTGGGC-TT-AAAAG--
1 TGCCACAGAGTCGTGGACTTTAAA-AGGAAAAAGAGTGCCACGGAGTCATGGACTTTGAAAAGAA
** ** *
6769534 GGTGCCACGGAGTTGTAGG-CTTTGAAAAGA-AGG
65 GGTGCCACGGAGTCAT-GGACTTTGAGCAGAGA-T
* *
6769567 TGCCACAGAGTCGTGGACTTTAAAAGGGAAAAAGAGTGCCACGGAGTTATGGGCTTTGAAAAGAA
1 TGCCACAGAGTCGTGGACTTTAAAA-GGAAAAAGAGTGCCACGGAGTCATGGACTTTGAAAAGAA
*
6769632 GGTGCCACGGAGTCGTGGACTTTGAGCAGAGAT
65 GGTGCCACGGAGTCATGGACTTTGAGCAGAGAT
* * * * * *
6769665 TGCCACTGAGTCGTGGACTTT-GAA-GAAAATGA-TGCCACTGAGTCGTGGACTTTGAGAAGAAG
1 TGCCACAGAGTCGTGGACTTTAAAAGGAAAAAGAGTGCCACGGAGTCATGGACTTTGAAAAGAAG
6769727 GTGCCACGGAGTCATGGACTTT
66 GTGCCACGGAGTCATGGACTTT
6769749 AAGAAGGTAT
Statistics
Matches: 156, Mismatches: 17, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
92 17 0.11
93 11 0.07
94 65 0.42
95 9 0.06
96 5 0.03
97 4 0.03
98 44 0.28
99 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.33, T:0.22
Consensus pattern (97 bp):
TGCCACAGAGTCGTGGACTTTAAAAGGAAAAAGAGTGCCACGGAGTCATGGACTTTGAAAAGAAG
GTGCCACGGAGTCATGGACTTTGAGCAGAGAT
Found at i:6770785 original size:22 final size:23
Alignment explanation
Indices: 6770742--6770786 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
6770732 CTCACCGAGA
6770742 TTTTCTGTTTTGTTTTTTTGTTT
1 TTTTCTGTTTTGTTTTTTTGTTT
6770765 TTTTCT-TTTT-TTTTTTGTGTTT
1 TTTTCTGTTTTGTTTTTT-TGTTT
6770787 GGAAAAGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 6 0.29
22 9 0.43
23 6 0.29
ACGTcount: A:0.00, C:0.04, G:0.11, T:0.84
Consensus pattern (23 bp):
TTTTCTGTTTTGTTTTTTTGTTT
Found at i:6777997 original size:52 final size:52
Alignment explanation
Indices: 6777927--6778047 Score: 215
Period size: 52 Copynumber: 2.3 Consensus size: 52
6777917 GAAAATTTAT
*
6777927 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
* *
6777979 TTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
6778031 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
6778048 AAGATCGGTG
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:6778060 original size:52 final size:52
Alignment explanation
Indices: 6777927--6778067 Score: 187
Period size: 52 Copynumber: 2.7 Consensus size: 52
6777917 GAAAATTTAT
*
6777927 CTGCATGTATCGATACATTTA-ATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TAAGATAGTGTATCGATACATCTGGGCAAATTTGC
* *** *
6777979 TTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATAAGATAGTGTATCGATACATCTGGGCAAATTTGC
*
6778031 CTGCATGTATCGATACA-AAGATCGGTGTATCGATACA
1 CTGCATGTATCGATACATAAGAT-AGTGTATCGATACA
6778068 ATGTATCGAT
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
51 4 0.05
52 74 0.95
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (52 bp):
CTGCATGTATCGATACATAAGATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:6778074 original size:13 final size:13
Alignment explanation
Indices: 6778056--6778080 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6778046 CAAAGATCGG
6778056 TGTATCGATACAA
1 TGTATCGATACAA
6778069 TGTATCGATACA
1 TGTATCGATACA
6778081 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:6778162 original size:13 final size:13
Alignment explanation
Indices: 6778144--6778168 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6778134 CAAAAAAATA
6778144 TGTATCGATACAT
1 TGTATCGATACAT
6778157 TGTATCGATACA
1 TGTATCGATACA
6778169 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:6778648 original size:51 final size:51
Alignment explanation
Indices: 6778576--6778840 Score: 295
Period size: 51 Copynumber: 5.1 Consensus size: 51
6778566 ATAAAAAATT
* *
6778576 TGAATGGCAATGCTTGGATGAAAACCTAAAAGGGCGTTCAAGTAAGGAAAA
1 TGAATGACAATGCTTGGATGAAAACCTAAAAGGGCGTTCAAGTAAGAAAAA
* * * *
6778627 TGAATGCCAATGCTTGGATGAAAA-CTCGAAAGGGTGTTCAGGTAAGAAAAAAAA
1 TGAATGACAATGCTTGGATGAAAACCT-AAAAGGGCGTTCAAGTAAG---AAAAA
* * * *
6778681 TTGAATGAAAATGCTTTGATGAAAA-CTAGGAAGAGCGTTCAAGTAAGAAAAA
1 -TGAATGACAATGCTTGGATGAAAACCTA-AAAGGGCGTTCAAGTAAGAAAAA
* **
6778733 TGAATGATAATGCTTGGATGAAAACCCGAAAGGGCGTTCAAGTAAGAAAAA
1 TGAATGACAATGCTTGGATGAAAACCTAAAAGGGCGTTCAAGTAAGAAAAA
* * *
6778784 TGAATGACAATGCTTAGATGAAAACC-CAAAGGGCGTTCAGGTAA-AAAAA
1 TGAATGACAATGCTTGGATGAAAACCTAAAAGGGCGTTCAAGTAAGAAAAA
6778833 TCGAATGA
1 T-GAATGA
6778841 AACCCAAAAA
Statistics
Matches: 183, Mismatches: 23, Indels: 17
0.82 0.10 0.08
Matches are distributed among these distances:
49 6 0.03
50 24 0.13
51 106 0.58
52 6 0.03
54 4 0.02
55 37 0.20
ACGTcount: A:0.43, C:0.11, G:0.25, T:0.20
Consensus pattern (51 bp):
TGAATGACAATGCTTGGATGAAAACCTAAAAGGGCGTTCAAGTAAGAAAAA
Found at i:6778702 original size:106 final size:105
Alignment explanation
Indices: 6778568--6778840 Score: 342
Period size: 106 Copynumber: 2.6 Consensus size: 105
6778558 TACTACGCAT
* * * *
6778568 AAAAAATTTGAATGGCAATGCTTGGATGAAAACCTAAAAGGGCGTTCAAGTAAGGAAAATGAATG
1 AAAAAAATTGAATGACAATGCTTAGATGAAAACCTAAAAGGGCGTTCAAGTAAGAAAAATGAATG
* * * *
6778633 CCAATGCTTGGATGAAAACTCGAAAGGGTGTTCAGGTAAG
66 ACAATGCTTGGATGAAAACCCGAAAGGGCGTTCAAGTAAG
* * * *
6778673 AAAAAAAATTGAATGAAAATGCTTTGATGAAAA-CTAGGAAGAGCGTTCAAGTAAGAAAAATGAA
1 -AAAAAAATTGAATGACAATGCTTAGATGAAAACCTA-AAAGGGCGTTCAAGTAAGAAAAATGAA
*
6778737 TGATAATGCTTGGATGAAAACCCGAAAGGGCGTTCAAGTAAG
64 TGACAATGCTTGGATGAAAACCCGAAAGGGCGTTCAAGTAAG
* *
6778779 --AAAAA-TGAATGACAATGCTTAGATGAAAACC-CAAAGGGCGTTCAGGTAA-AAAAATCGAAT
1 AAAAAAATTGAATGACAATGCTTAGATGAAAACCTAAAAGGGCGTTCAAGTAAGAAAAAT-GAAT
6778839 GA
65 GA
6778841 AACCCAAAAA
Statistics
Matches: 146, Mismatches: 18, Indels: 11
0.83 0.10 0.06
Matches are distributed among these distances:
100 6 0.04
101 20 0.14
102 22 0.15
103 6 0.04
105 3 0.02
106 89 0.61
ACGTcount: A:0.44, C:0.11, G:0.24, T:0.21
Consensus pattern (105 bp):
AAAAAAATTGAATGACAATGCTTAGATGAAAACCTAAAAGGGCGTTCAAGTAAGAAAAATGAATG
ACAATGCTTGGATGAAAACCCGAAAGGGCGTTCAAGTAAG
Found at i:6780405 original size:42 final size:42
Alignment explanation
Indices: 6780299--6780472 Score: 138
Period size: 42 Copynumber: 4.1 Consensus size: 42
6780289 GAGAGACTCA
* ** * * * *
6780299 TTCATCTTTCGTCTGCCTATCAGCTTAGGCTCAAGAGACTTC
1 TTCATCTTTCATCTGCCCGTCGGCTTAGACTCAGGAGACTTT
** *
6780341 TTCATCCTTT-ATCTGCTGGTCGGCTCAGACTCAGGAGACTTT
1 TTCAT-CTTTCATCTGCCCGTCGGCTTAGACTCAGGAGACTTT
* *
6780383 TTCATCTTTCGTCTGCCCGTCGGCTTAAACTC-GGAAGACTTT
1 TTCATCTTTCATCTGCCCGTCGGCTTAGACTCAGG-AGACTTT
* * ** * *
6780425 TTTATCTTTCATCTACCCGTCAACTTAGAC-CTGGGAGACTCT
1 TTCATCTTTCATCTGCCCGTCGGCTTAGACTC-AGGAGACTTT
6780467 TTCATC
1 TTCATC
6780473 CATTGTTTGC
Statistics
Matches: 105, Mismatches: 22, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
41 7 0.07
42 92 0.88
43 6 0.06
ACGTcount: A:0.18, C:0.28, G:0.17, T:0.36
Consensus pattern (42 bp):
TTCATCTTTCATCTGCCCGTCGGCTTAGACTCAGGAGACTTT
Found at i:6780572 original size:84 final size:84
Alignment explanation
Indices: 6780454--6780725 Score: 239
Period size: 84 Copynumber: 3.3 Consensus size: 84
6780444 TCAACTTAGA
* ** * * *
6780454 CCTGGGAGACTCTTTCATCCATTGTTTGCCTATCGACTTAAACCTAGGAGACCTCTTCATCCATC
1 CCTGAGAGACTCTTTCATCTTTTGTTTACCTATCGACTTAAACCCAGGAGACCTCTTCATCAATC
*
6780519 GTCTGCCCATCGGCTCAGG
66 GTCTACCCATCGGCTCAGG
* * * *
6780538 CCTGAGAGACTTTTTCATCTTTTGTTTACTTATCGACTTAGACCCAAGAGACCTCTTCATCAATC
1 CCTGAGAGACTCTTTCATCTTTTGTTTACCTATCGACTTAAACCCAGGAGACCTCTTCATCAATC
* * * *
6780603 GTTTA-CCATTGGCTTAGT
66 GTCTACCCATCGGCTCAGG
* * * * * * * *
6780621 CTTGGGAGACTCCTTT-ATCTTTTATCTACCTACCG--TTCAAACCCGGGAAACCAT-TTCATCT
1 CCTGAGAGACT-CTTTCATCTTTTGTTTACCTATCGACTT-AAACCCAGGAGACC-TCTTCATCA
* *
6780682 ATCATCTACCCGTCGGCTCAGG
63 ATCGTCTACCCATCGGCTCAGG
* *
6780704 CCTCAGAGACTTTTTCATCTTT
1 CCTGAGAGACTCTTTCATCTTT
6780726 CATCTACTCG
Statistics
Matches: 146, Mismatches: 37, Indels: 11
0.75 0.19 0.06
Matches are distributed among these distances:
81 2 0.01
82 25 0.17
83 58 0.40
84 61 0.42
ACGTcount: A:0.21, C:0.29, G:0.16, T:0.34
Consensus pattern (84 bp):
CCTGAGAGACTCTTTCATCTTTTGTTTACCTATCGACTTAAACCCAGGAGACCTCTTCATCAATC
GTCTACCCATCGGCTCAGG
Found at i:6780722 original size:42 final size:42
Alignment explanation
Indices: 6780674--6781502 Score: 178
Period size: 42 Copynumber: 19.8 Consensus size: 42
6780664 CGGGAAACCA
* * *
6780674 TTTCATCTATCATCTACCCGTCGGCTCAGGCCTCAGAGACTT
1 TTTCATCTTTCATCTACCCGTCGGCTCAGACCTGAGAGACTT
* * * *
6780716 TTTCATCTTTCATCTACTCGTTGGCTTAGACCTGAGAGACCT
1 TTTCATCTTTCATCTACCCGTCGGCTCAGACCTGAGAGACTT
* * * * *** * * * *
6780758 CTTCATCTATT-GTTTGCTTATCGGCAT-AG-TCTCGACAAACTC
1 TTTCATCT-TTCATCTACCCGTCGGC-TCAGACCT-GAGAGACTT
* * * * *
6780800 TTTCATCTTTCATTTGCCCGTCGGCTCA-AGCTTGGGAAACTT
1 TTTCATCTTTCATCTACCCGTCGGCTCAGA-CCTGAGAGACTT
* * * ** *
6780842 TTTCATCTTTCATTTGCCCATCGGCTTTGACCTAAGAGA-TT
1 TTTCATCTTTCATCTACCCGTCGGCTCAGACCTGAGAGACTT
* * * * *
6780883 CTTTCATCTTTCGTCTACCCATCAGCTCAGACCCCG-GAGACCT
1 -TTTCATCTTTCATCTACCCGTCGGCTCAGA-CCTGAGAGACTT
* ** * * *
6780926 CTTCATCCATCGTCTGCCCGTCGGCTCA-AGCCTGGGAGACTT
1 TTTCATCTTTCATCTACCCGTCGGCTCAGA-CCTGAGAGACTT
* * * * *
6780968 TTTCATCTTTCGTCTACCTGTCGGCTTAGACCTGACAGACCT
1 TTTCATCTTTCATCTACCCGTCGGCTCAGACCTGAGAGACTT
** * * ** * * *
6781010 TTTCATCCATCATTTGCTAGTCGACTCAG-TCTCGAGAGACTC
1 TTTCATCTTTCATCTACCCGTCGGCTCAGACCT-GAGAGACTT
** * * ** * *
6781052 TTTCATCTTTTGTCTGCCCATCAACTCAAACCCGAGAGACTT
1 TTTCATCTTTCATCTACCCGTCGGCTCAGACCTGAGAGACTT
* * * * * ** *
6781094 TTTTATCCATT-ATCTACTCGTCAGTTCAGGTCTGGGAGAC-T
1 TTTCAT-CTTTCATCTACCCGTCGGCTCAGACCTGAGAGACTT
* * ** * * * *
6781135 CTTCATTTTTCATCTACCTATCGGCTTAGACATGAAAGACCT
1 TTTCATCTTTCATCTACCCGTCGGCTCAGACCTGAGAGACTT
* ** * * * * * * *
6781177 CTTCATCCATCGTTTGCCCATCGGCTCAGTCCCGAAAGACTCT
1 TTTCATCTTTCATCTACCCGTCGGCTCAGACCTGAGAGACT-T
* * * * ** * * * *
6781220 TTT-ATCTTTCGTTTGCTCAACAGCTTAGGCC-CAGGAGACTT
1 TTTCATCTTTCATCTACCCGTCGGCTCAGACCTGA-GAGACTT
* * * * ** * * * *
6781261 CTTCATCTTTTATTTTCCTATCAGTTCAAACCCGAGAGACTT
1 TTTCATCTTTCATCTACCCGTCGGCTCAGACCTGAGAGACTT
* ** * * *
6781303 CTTT-ATCTTTTATCTACCTATCGACTTAGACCTGAGAGACTC
1 -TTTCATCTTTCATCTACCCGTCGGCTCAGACCTGAGAGACTT
* * * * *
6781345 TTTAATCTTTC-TTTAGCCCTTCGGGTCA-ATCCTGAGAGACTC
1 TTTCATCTTTCATCTA-CCCGTCGGCTCAGA-CCTGAGAGACTT
* * * * *
6781387 TTTCATCTTTCGTTTACCCATCGGCTCAG-GCTCGGGAGACTT
1 TTTCATCTTTCATCTACCCGTCGGCTCAGACCT-GAGAGACTT
* ** * * * * *
6781429 CTTCATCTTTCGCCTGCCCGTTGGCTCAAACTTGCGAGACTT
1 TTTCATCTTTCATCTACCCGTCGGCTCAGACCTGAGAGACTT
* * * **
6781471 CTTCATCTTTCGTCTGCCTATCGGCTCAGACC
1 TTTCATCTTTCATCTACCCGTCGGCTCAGACC
6781503 AAAAAGACTC
Statistics
Matches: 567, Mismatches: 190, Indels: 60
0.69 0.23 0.07
Matches are distributed among these distances:
40 2 0.00
41 49 0.09
42 492 0.87
43 24 0.04
ACGTcount: A:0.19, C:0.29, G:0.16, T:0.35
Consensus pattern (42 bp):
TTTCATCTTTCATCTACCCGTCGGCTCAGACCTGAGAGACTT
Found at i:6781008 original size:84 final size:84
Alignment explanation
Indices: 6780884--6781204 Score: 243
Period size: 84 Copynumber: 3.8 Consensus size: 84
6780874 TAAGAGATTC
*
6780884 TTTCATCTTTCGTCTACCCATCAGCTCAGACCCCG-GAGACCTCTTCATCCATCGTCTGCCCGTC
1 TTTCATCTTTCGTCTACCCATCAGCTCAGA-CCCGAGAGACCTCTTCATCCATCATCTGCCCGTC
*
6780948 GGCTCAAGCCTGGGAGACTT
65 GGCTCAAGTCTGGGAGACTT
** * * * * * * **
6780968 TTTCATCTTTCGTCTACCTGTCGGCTTAGACCTGACAGACCTTTTCATCCATCATTTGCTAGTCG
1 TTTCATCTTTCGTCTACCCATCAGCTCAGACCCGAGAGACCTCTTCATCCATCATCTGCCCGTCG
* * *
6781033 ACTC-AGTCTCGAGAGACTC
66 GCTCAAGTCT-GGGAGACTT
* * * * * * * * * * *
6781052 TTTCATCTTTTGTCTGCCCATCAACTCAAACCCGAGAGACTTTTTTATCCATTATCTACTCGTCA
1 TTTCATCTTTCGTCTACCCATCAGCTCAGACCCGAGAGACCTCTTCATCCATCATCTGCCCGTCG
* *
6781117 GTTCAGGTCTGGGAGAC-T
66 GCTCAAGTCTGGGAGACTT
* * * * * * ** * * * *
6781135 CTTCATTTTTCATCTACCTATCGGCTTAGACATGAAAGACCTCTTCATCCATCGTTTGCCCATCG
1 TTTCATCTTTCGTCTACCCATCAGCTCAGACCCGAGAGACCTCTTCATCCATCATCTGCCCGTCG
6781200 GCTCA
66 GCTCA
6781205 GTCCCGAAAG
Statistics
Matches: 173, Mismatches: 61, Indels: 7
0.72 0.25 0.03
Matches are distributed among these distances:
83 53 0.31
84 116 0.67
85 4 0.02
ACGTcount: A:0.20, C:0.31, G:0.16, T:0.33
Consensus pattern (84 bp):
TTTCATCTTTCGTCTACCCATCAGCTCAGACCCGAGAGACCTCTTCATCCATCATCTGCCCGTCG
GCTCAAGTCTGGGAGACTT
Found at i:6781015 original size:168 final size:168
Alignment explanation
Indices: 6780841--6781502 Score: 485
Period size: 168 Copynumber: 3.9 Consensus size: 168
6780831 TTGGGAAACT
** ** *
6780841 TTTTCATCTTTCATTTGCCCATCGGCTTTGACCTAAGAGATTCTTTCATCTTTCGTCTACCCATC
1 TTTTCATCCATCATTTGCCCATCGGCTCAGACCTAAGAGACTCTTTCATCTTTCGTCTACCCATC
* * * * *
6780906 AGCTCAGACCCCGGAGACCTCTTCATCCATCGTCTGCCCGTCGGCTCAAGCCTGGGAGACTTTTT
66 AGCTCAGACCCCGGAGACTTCTTCATCCATCATCTGCCCGTCAGCTCAAACCTGGGAGACTTCTT
* * *
6780971 CATCTTTCGTCTACCTGTCGGCTTAGACCTGACAGACC
131 CATCTTTCATCTACCTATCGGCTTAGACCTGAAAGACC
* * * * * *
6781009 TTTTCATCCATCATTTG-CTAGTCGACTCAG-TCTCGAGAGACTCTTTCATCTTTTGTCTGCCCA
1 TTTTCATCCATCATTTGCCCA-TCGGCTCAGACCT-AAGAGACTCTTTCATCTTTCGTCTACCCA
* * * * * * * * ***
6781072 TCAACTCA-AACCCGAGAGACTTTTTTATCCATTATCTACTCGTCAGTTCAGGTCTGGGAGAC-T
64 TCAGCTCAGACCCCG-GAGACTTCTTCATCCATCATCTGCCCGTCAGCTCAAACCTGGGAGACTT
* *
6781135 CTTCATTTTTCATCTACCTATCGGCTTAGACATGAAAGACC
128 CTTCATCTTTCATCTACCTATCGGCTTAGACCTGAAAGACC
* * * * * * * * *
6781176 TCTTCATCCATCGTTTGCCCATCGGCTCAGTCCCGAA-AGACTCTTTTATCTTTCGTTTGCTCAA
1 TTTTCATCCATCATTTGCCCATCGGCTCAG-ACCTAAGAGACTCTTTCATCTTTCGTCTACCCAT
* * * ** * * * ** * * *
6781240 CAGCTTAGGCCCAGGAGACTTCTTCATCTTTTATTTTCCTATCAGTTCAAACCCGAGAGACTTCT
65 CAGCTCAGACCCCGGAGACTTCTTCATCCATCATCTGCCCGTCAGCTCAAACCTGGGAGACTTCT
* * * *
6781305 TTATCTTTTATCTACCTATCGACTTAGACCTGAGAGA-C
130 TCATCTTTCATCTACCTATCGGCTTAGACCTGAAAGACC
* ** * * * *
6781343 TCTTTAATCTTTC-TTTAGCCCTTCGGGTCA-ATCCTGAGAGACTCTTTCATCTTTCGTTTACCC
1 T-TTTCATCCATCATTT-GCCCATCGGCTCAGA-CCTAAGAGACTCTTTCATCTTTCGTCTACCC
* * * * ** ** ** * *
6781406 ATCGGCTCAGGCTCGGGAGACTTCTTCATCTTTCGCCTGCCCGTTGGCTCAAACTTGCGAGACTT
63 ATCAGCTCAGACCCCGGAGACTTCTTCATCCATCATCTGCCCGTCAGCTCAAACCTGGGAGACTT
* * *
6781471 CTTCATCTTTCGTCTGCCTATCGGCTCAGACC
128 CTTCATCTTTCATCTACCTATCGGCTTAGACC
6781503 AAAAAGACTC
Statistics
Matches: 379, Mismatches: 103, Indels: 24
0.75 0.20 0.05
Matches are distributed among these distances:
167 136 0.36
168 242 0.64
169 1 0.00
ACGTcount: A:0.19, C:0.30, G:0.16, T:0.35
Consensus pattern (168 bp):
TTTTCATCCATCATTTGCCCATCGGCTCAGACCTAAGAGACTCTTTCATCTTTCGTCTACCCATC
AGCTCAGACCCCGGAGACTTCTTCATCCATCATCTGCCCGTCAGCTCAAACCTGGGAGACTTCTT
CATCTTTCATCTACCTATCGGCTTAGACCTGAAAGACC
Found at i:6781049 original size:126 final size:125
Alignment explanation
Indices: 6780674--6781059 Score: 352
Period size: 126 Copynumber: 3.1 Consensus size: 125
6780664 CGGGAAACCA
* * ** *
6780674 TTTCATCTATCATCTACCCGTCGGCTCAGGCCTCAGAGACTTTTTCATCTTTCATCTA-CTCGTT
1 TTTCATCTATCATCTGCCCGTCGGCTCAAGCCTGGGAGACTTTTTCATCTTTCATCTACCT-GTC
* * * * *
6780738 GGCTTAGACCTGAGAGACCTCTTCATCTATTGTTTGCTTATCGGCAT-AGTCTCGACAAACTC
65 GGCTTAGACCTGAGAGACCTTTTCATCTATCGTTTGC-TATCGAC-TCAGTCTCGAGAGACTC
* * * * * * **
6780800 TTTCATCTTTCATTTGCCCGTCGGCTCAAGCTTGGGAAACTTTTTCATCTTTCATTTGCCCATCG
1 TTTCATCTATCATCTGCCCGTCGGCTCAAGCCTGGGAGACTTTTTCATCTTTCATCTACCTGTCG
* * * * ** * * *
6780865 GCTTTGACCTAAGAGA-TTCTTTCATCTTTCGTCTACCCATC-AGCTCAGACCCCG-GAGAC-C
66 GCTTAGACCTGAGAGACCT-TTTCATCTATCGT-TTGCTATCGA-CTCAG-TCTCGAGAGACTC
* * *
6780925 TCTTCATCCATCGTCTGCCCGTCGGCTCAAGCCTGGGAGACTTTTTCATCTTTCGTCTACCTGTC
1 T-TTCATCTATCATCTGCCCGTCGGCTCAAGCCTGGGAGACTTTTTCATCTTTCATCTACCTGTC
* * *
6780990 GGCTTAGACCTGACAGACCTTTTCATCCATCATTTGCTAGTCGACTCAGTCTCGAGAGACTC
65 GGCTTAGACCTGAGAGACCTTTTCATCTATCGTTTGCTA-TCGACTCAGTCTCGAGAGACTC
6781052 TTTCATCT
1 TTTCATCT
6781060 TTTGTCTGCC
Statistics
Matches: 197, Mismatches: 51, Indels: 24
0.72 0.19 0.09
Matches are distributed among these distances:
125 10 0.05
126 177 0.90
127 10 0.05
ACGTcount: A:0.18, C:0.30, G:0.17, T:0.35
Consensus pattern (125 bp):
TTTCATCTATCATCTGCCCGTCGGCTCAAGCCTGGGAGACTTTTTCATCTTTCATCTACCTGTCG
GCTTAGACCTGAGAGACCTTTTCATCTATCGTTTGCTATCGACTCAGTCTCGAGAGACTC
Found at i:6782969 original size:164 final size:163
Alignment explanation
Indices: 6782379--6783211 Score: 857
Period size: 166 Copynumber: 5.0 Consensus size: 163
6782369 TTTCTTTTCG
* * * * *
6782379 AATTCTTCTTATTTTCAAATTACGAGATTTT-TTCTCCGTAAATTTTTTCGAGAGGATTTTTCTT
1 AATTC-TCCTATTTTCAAAATACGAG-TTTTCTACTCCATAAATTTTTTCGGGAGGATTTTTCTT
* ** *
6782443 AATTTTTAATTTTTAAAATTCATCAAATATTATTATTTGGTTCATATTAATTCAATTTTTAGAAA
64 AGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTC-ATTTTTAAAAA
* ** *
6782508 TTAATTCATTTTCC-TGAGTTTTTGAATTTTTTCCTTGA
128 TTCATTCA-TTTCCAT-AAATTTTG-ATTTTTTTCTTGA
* * * * *
6782546 AATT-TCTTTTTTTTTAAAATACGATATTTTCTACTCTATAAATTTTTT-GAGGA-GATTTTTCT
1 AATTCTC-CTATTTTCAAAATACGA-GTTTTCTACTCCATAAATTTTTTCG-GGAGGATTTTTCT
** * *
6782608 CGGTTTTCAATTTTTAAAATTCATCAAACATTATTATTTATTTCATATTAATTCAGTTTTTAAAA
63 TAGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTCA-TTTTTAAAA
* * * * * *
6782673 ATTAATTCATTTTCATGAGTTTTTATATTTTTTACTCGA
127 ATTCATTCATTTCCATAAATTTTGAT-TTTTTT-CTTGA
* **
6782712 AATTTTCCT-TTTTCTAAAATACG-GTGTTGTCTACTCTGTAAATTTTTT-GAGG-GGATTTTTC
1 AATTCTCCTATTTTC-AAAATACGAGT-TT-TCTACTCCATAAATTTTTTCG-GGAGGATTTTTC
* * *
6782773 TTAGTTTTTAAATTTTAAAATTCATCAAATATTATTATTTATTTTATATTAATTTATTTTTCAAA
62 TTAGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTCATTTTT-AAA
6782838 AATTCATTCATTTCCATAAATTTTGA-TTTTTTCTTTGA
126 AATTCATTCATTTCCATAAATTTTGATTTTTTTC-TTGA
*
6782876 AATTCTCCTATTTTCAAAATACAGAGTTTTCTACTCCAT-AATTTTTTCGGGAGGATTTTTTTTA
1 AATTCTCCTATTTTCAAAATAC-GAGTTTTCTACTCCATAAATTTTTTCGGGAGGATTTTTCTTA
* * * * *
6782940 GTTTTTAATTTTTAAAATTCATAAAATATTATTATTTATTTCACACTAATCCAGTTTTAAAAATT
65 GTTTTTAATTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTCATTTTTAAAAATT
* * * *
6783005 CATTCATTTCGATAATTTTTGAATTTTTTTCATAA
130 CATTCATTTCCATAAATTTTG-ATTTTTTTCTTGA
* * * *
6783040 AATTCT-CTTTTTTCTGAAATACAGAGTTTTCTACTTCA-AAATTTTTTTCGAGAGGATTTTTCT
1 AATTCTCCTATTTTC-AAAATAC-GAGTTTTCTACTCCATAAA-TTTTTTCGGGAGGATTTTTCT
* * *
6783103 TGGTTATTAATTTTTAAAATTCATCAAATATTATTATTTATTTCACT-TTAATTCTTTTTTCAAA
63 TAGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTATTTCA-TATTAATTCATTTTT-AAA
* *
6783167 AATTCATTCATTCCCATAAATTTTGATTTTTTTCTTAA
126 AATTCATTCATTTCCATAAATTTTGATTTTTTTCTTGA
*
6783205 AAATCTC
1 AATTCTC
6783212 ATTTCTTTAG
Statistics
Matches: 564, Mismatches: 74, Indels: 57
0.81 0.11 0.08
Matches are distributed among these distances:
163 44 0.08
164 129 0.23
165 129 0.23
166 240 0.43
167 22 0.04
ACGTcount: A:0.30, C:0.11, G:0.07, T:0.52
Consensus pattern (163 bp):
AATTCTCCTATTTTCAAAATACGAGTTTTCTACTCCATAAATTTTTTCGGGAGGATTTTTCTTAG
TTTTTAATTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAATTCATTTTTAAAAATTC
ATTCATTTCCATAAATTTTGATTTTTTTCTTGA
Found at i:6783166 original size:329 final size:331
Alignment explanation
Indices: 6782418--6783198 Score: 962
Period size: 329 Copynumber: 2.4 Consensus size: 331
6782408 TTTTCTCCGT
* **
6782418 AAATTTTTTCGAGAGGATTTTTCTTAATTTTTAATTTTTAAAATTCATCAAATATTATTATTTGG
1 AAATTTTTTCGAGAGGATTTTTCTTAGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTAT
* * * **
6782483 TTCATATTAATTCAATTTTT-AGAAATTAATTCATTTTCC-TGAGTTTTTGAATTTTTTCCTTGA
66 TTCATATTAATTC-TTTTTTCAAAAATTCATTCA-TTTCCAT-AAATTTTG-ATTTTTTCCTTGA
* * * * *
6782546 AATTTCTTTTTTTTTAAAATACGATATTTTCTACTCTATAAATTTTTTGAGGAGATTTTTCTCGG
127 AATTTCTCTATTTTCAAAATACGATATTTTCTACTCCATAAATTTTTTGAGGAGATTTTTCTCAG
* * * *
6782611 TTTTCAATTTTTAAAATTCATCAAACATTATTATTTATTTCATATTAATTCAGTTTTTAAAAATT
192 TTTTCAATTTTTAAAATTCATAAAACATTATTATTTATTTCACACTAATCCAGTTTTTAAAAATT
* * * * *
6782676 AATTCATTTTCATGAGTTTTTATATTTTTTACTCGAAATTTTCCTTTTTCTAAAATACGGTGTTG
257 AATTCATTTTCATGAATTTTTATATTTTTTACTCAAAATTCTCCTTTTTCTAAAATACAGAGTTG
**
6782741 TCTACTCTGT
322 TCTACTCTCA
* *
6782751 AAATTTTTT-GAGGGGATTTTTCTTAGTTTTTAAATTTTAAAATTCATCAAATATTATTATTTAT
1 AAATTTTTTCGAGAGGATTTTTCTTAGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTAT
* *
6782815 TTTATATTAATT-TATTTTTCAAAAATTCATTCATTTCCATAAATTTTGATTTTTTCTTTGAAA-
66 TTCATATTAATTCT-TTTTTCAAAAATTCATTCATTTCCATAAATTTTGATTTTTTCCTTGAAAT
* * *
6782878 TTCTCCTATTTTCAAAATACAGA-GTTTTCTACTCCAT-AATTTTTTCG-GGAGGATTTTTTTTA
130 TTCT-CTATTTTCAAAATAC-GATATTTTCTACTCCATAAATTTTTT-GAGGA-GATTTTTCTCA
* *
6782940 GTTTTTAATTTTTAAAATTCATAAAATATTATTATTTATTTCACACTAATCCAG-TTTTAAAAAT
191 GTTTTCAATTTTTAAAATTCATAAAACATTATTATTTATTTCACACTAATCCAGTTTTTAAAAAT
* * * *
6783004 TCATTCA-TTTCGAT-AATTTTTGA-ATTTTTTTCAT-AAAATTCTCTTTTTTCTGAAATACAGA
256 TAATTCATTTTC-ATGAATTTTT-ATATTTTTTAC-TCAAAATTCTCCTTTTTCTAAAATACAGA
*
6783065 GTTTTCTACT-TCA
318 GTTGTCTACTCTCA
* *
6783078 AAATTTTTTTCGAGAGGATTTTTCTTGGTTATTAATTTTTAAAATTCATCAAATATTATTATTTA
1 AAA-TTTTTTCGAGAGGATTTTTCTTAGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTA
*
6783143 TTTCACT-TTAATTCTTTTTTCAAAAATTCATTCATTCCCATAAATTTTGATTTTTT
65 TTTCA-TATTAATTCTTTTTTCAAAAATTCATTCATTTCCATAAATTTTGATTTTTT
6783199 TCTTAAAAAT
Statistics
Matches: 390, Mismatches: 44, Indels: 32
0.84 0.09 0.07
Matches are distributed among these distances:
327 4 0.01
328 54 0.14
329 135 0.35
330 97 0.25
331 18 0.05
332 73 0.19
333 9 0.02
ACGTcount: A:0.30, C:0.11, G:0.07, T:0.52
Consensus pattern (331 bp):
AAATTTTTTCGAGAGGATTTTTCTTAGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTAT
TTCATATTAATTCTTTTTTCAAAAATTCATTCATTTCCATAAATTTTGATTTTTTCCTTGAAATT
TCTCTATTTTCAAAATACGATATTTTCTACTCCATAAATTTTTTGAGGAGATTTTTCTCAGTTTT
CAATTTTTAAAATTCATAAAACATTATTATTTATTTCACACTAATCCAGTTTTTAAAAATTAATT
CATTTTCATGAATTTTTATATTTTTTACTCAAAATTCTCCTTTTTCTAAAATACAGAGTTGTCTA
CTCTCA
Found at i:6783234 original size:329 final size:328
Alignment explanation
Indices: 6782418--6783292 Score: 934
Period size: 329 Copynumber: 2.6 Consensus size: 328
6782408 TTTTCTCCGT
* **
6782418 AAATTTTTTCGAGAGGATTTTTCTTAATTTTTAATTTTTAAAATTCATCAAATATTATTATTTGG
1 AAATTTTTTCGAGAGGATTTTTCTTAGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTAT
* * * ** *
6782483 TTCATATTAATTCAATTTTT-AGAAATTAATTCATTTTCC-TGAGTTTTTGAATTTTTTCCTTGA
66 TTCATATTAATTC-TTTTTTCAAAAATTCATTCA-TTTCCAT-AAATTTTG-ATTTTTTTCTT-A
* ** * * *
6782546 AATTTCTTTTTTTTTAAAATACGATATTTTCTACTCTATAAATTTTTTGAGGAGATTTTTCTCGG
126 AA-ATCTCATTTTTTAAAATACGA-GTTTTCTACTCCATAAATTTTTTGAGGAGATTTTTCTCAG
* * * *
6782611 TTTTCAATTTTTAAAATTCATCAAACATTATTATTTATTTCATATTAATTCAGTTTTTAAAAATT
189 TTTTCAATTTTTAAAATTCATAAAACATTATTATTTATTTCACACTAATCCAGTTTTTAAAAATT
* * * * *
6782676 AATTCATTTTCATGAGTTTTTATATTTTTTACTCGAAATTTTCCTTTTTCTAAAATACGGTGTTG
254 AATTCATTTTCATGAATTTTTATATTTTTTACTCAAAATTCTCCTTTTTCTAAAATACAGAGTTG
**
6782741 TCTACTCTGT
319 TCTACTCTCA
* *
6782751 AAATTTTTT-GAGGGGATTTTTCTTAGTTTTTAAATTTTAAAATTCATCAAATATTATTATTTAT
1 AAATTTTTTCGAGAGGATTTTTCTTAGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTAT
*
6782815 TTTATATTAATT-TATTTTTCAAAAATTCATTCATTTCCATAAATTTTGA-TTTTTTCTTTGAAA
66 TTCATATTAATTCT-TTTTTCAAAAATTCATTCATTTCCATAAATTTTGATTTTTTTC-TT-AAA
* * * * *
6782878 TTCTCCTATTTTCAAAATACAGAGTTTTCTACTCCAT-AATTTTTTCG-GGAGGATTTTTTTTAG
128 ATCTCAT-TTTTTAAAATAC-GAGTTTTCTACTCCATAAATTTTTT-GAGGA-GATTTTTCTCAG
* *
6782941 TTTTTAATTTTTAAAATTCATAAAATATTATTATTTATTTCACACTAATCCAG-TTTTAAAAATT
189 TTTTCAATTTTTAAAATTCATAAAACATTATTATTTATTTCACACTAATCCAGTTTTTAAAAATT
* * * *
6783005 CATTCA-TTTCGAT-AATTTTTGA-ATTTTTTTCAT-AAAATTCTCTTTTTTCTGAAATACAGAG
254 AATTCATTTTC-ATGAATTTTT-ATATTTTTTAC-TCAAAATTCTCCTTTTTCTAAAATACAGAG
*
6783066 TTTTCTACT-TCA
316 TTGTCTACTCTCA
* *
6783078 AAATTTTTTTCGAGAGGATTTTTCTTGGTTATTAATTTTTAAAATTCATCAAATATTATTATTTA
1 AAA-TTTTTTCGAGAGGATTTTTCTTAGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTA
*
6783143 TTTCACT-TTAATTCTTTTTTCAAAAATTCATTCATTCCCATAAATTTTGATTTTTTTCTTAAAA
65 TTTCA-TATTAATTCTTTTTTCAAAAATTCATTCATTTCCATAAATTTTGATTTTTTTCTT-AAA
* ** * * * * *
6783207 ATCTCATTTCTTTAGGAAAT-CGAGTTTTCTTCTCTGTAAATTCTTTGGGGGGGAGTTTTCTCGG
128 ATCTCATTT-TTTA--AAATACGAGTTTTCTACTCCATAAATT-TTTTGAGGAGATTTTTCTCAG
** *
6783271 TTTAAAATTTTTAGAATTCATA
189 TTTTCAATTTTTAAAATTCATA
6783293 TAATATTGTC
Statistics
Matches: 460, Mismatches: 60, Indels: 47
0.81 0.11 0.08
Matches are distributed among these distances:
327 4 0.01
328 56 0.12
329 162 0.35
330 129 0.28
331 27 0.06
332 73 0.16
333 9 0.02
ACGTcount: A:0.29, C:0.11, G:0.08, T:0.51
Consensus pattern (328 bp):
AAATTTTTTCGAGAGGATTTTTCTTAGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTAT
TTCATATTAATTCTTTTTTCAAAAATTCATTCATTTCCATAAATTTTGATTTTTTTCTTAAAATC
TCATTTTTTAAAATACGAGTTTTCTACTCCATAAATTTTTTGAGGAGATTTTTCTCAGTTTTCAA
TTTTTAAAATTCATAAAACATTATTATTTATTTCACACTAATCCAGTTTTTAAAAATTAATTCAT
TTTCATGAATTTTTATATTTTTTACTCAAAATTCTCCTTTTTCTAAAATACAGAGTTGTCTACTC
TCA
Found at i:6783383 original size:329 final size:328
Alignment explanation
Indices: 6782418--6783370 Score: 761
Period size: 330 Copynumber: 2.9 Consensus size: 328
6782408 TTTTCTCCGT
* * * * **
6782418 AAATTTTTTCGAGAGGATTTTTCTTAATTTTTAATTTTTAAAATTCATCAAATATTATTATTTGG
1 AAATTTTTTTGAGAGGATTTTTCTTAGTTATTAAATTTTAAAATTCATCAAATATTATTATTTAT
* * * * ** * *
6782483 TTCATATTAATTCAATTTTT-AGAAATTAATTCATTTTCC-TGAGTTTTTGAATTTTTTCCTT-G
66 TTCATATTAATT-TATTTTTCAAAAATTCATTCA-TTCCCAT-AAATTTTG-ATTTTTTCTTTAA
* * * * * * * *
6782545 AAATTTCTTTTTTTTTAAAATAC-GATATTTTCTACTCTATAAATT-TTTTGAGGA-GATTTTTC
127 AAATCTC-ATATTTTCAAAATACAGA-GTTTTCTACTCCAT-AATTCTTTCG-GGAGGAGTTTTC
* ** * * * * ** * * * *
6782607 TCGGTTTTCAATTTTTAAAATTCATCAAACATTATTATTTATTTCATATTAATTCAGTTTTTAAA
188 TCAGTTTAAAATTTTTAAAATTCATAAAATATTATCATTGAACTCACACTAATCCA-CTTTTAAA
* * * * * ** * *
6782672 AATTAATTCATTTTC-ATGAGTTTTTATATTTTTTAC-TCGAAATTTTCCTTTTTCTAAAATACG
252 AATTAATTCA-TTTCGAT-AATTTTTAAATTTTTTGCAT-AAAATTCTAATTTTTCTGAAATACA
* * **
6782735 GTGTTGTCTACTCTGT
314 GAGTTTTCTACT-TCA
* *
6782751 AAA-TTTTTTGAGGGGATTTTTCTTAGTTTTTAAATTTTAAAATTCATCAAATATTATTATTTAT
1 AAATTTTTTTGAGAGGATTTTTCTTAGTTATTAAATTTTAAAATTCATCAAATATTATTATTTAT
* * * *
6782815 TTTATATTAATTTATTTTTCAAAAATTCATTCATTTCCATAAATTTTGATTTTTTCTTTGAAATT
66 TTCATATTAATTTATTTTTCAAAAATTCATTCATTCCCATAAATTTTGATTTTTTCTTTAAAAAT
* * * * * *
6782880 CTCCTATTTTCAAAATACAGAGTTTTCTACTCCATAATTTTTTCGGGAGGATTTTTTTTAGTTTT
131 CTCATATTTTCAAAATACAGAGTTTTCTACTCCATAATTCTTTCGGGAGGAGTTTTCTCAGTTTA
* * * ** * *
6782945 TAATTTTTAAAATTCATAAAATATTATTATTTATTTCACACTAATCCAGTTTTAAAAATTCATTC
196 AAATTTTTAAAATTCATAAAATATTATCATTGAACTCACACTAATCCACTTTTAAAAATTAATTC
* * **
6783010 ATTTCGATAATTTTTGAATTTTTTTCATAAAATTCTCTTTTTTCTGAAATACAGAGTTTTCTACT
261 ATTTCGATAATTTTTAAATTTTTTGCATAAAATTCTAATTTTTCTGAAATACAGAGTTTTCTACT
6783075 TCA
326 TCA
* *
6783078 AAATTTTTTTCGAGAGGATTTTTCTTGGTTATTAATTTTTAAAATTCATCAAATATTATTATTTA
1 AAATTTTTTT-GAGAGGATTTTTCTTAGTTATTAAATTTTAAAATTCATCAAATATTATTATTTA
6783143 TTTCACT-TTAATTCT-TTTTTCAAAAATTCATTCATTCCCATAAATTTTGATTTTTT-TCTTAA
65 TTTCA-TATTAATT-TATTTTTCAAAAATTCATTCATTCCCATAAATTTTGATTTTTTCT-TTAA
* * ** * *
6783205 AAATCTCAT-TTCTTTAGGAAAT-C-GAGTTTTCTTCTCTGTAAATTCTTTGGGGGGGAGTTTTC
127 AAATCTCATATT-TTCA--AAATACAGAGTTTTCTACTCCAT-AATTCTTTCGGGAGGAGTTTTC
* * * * * * * *
6783267 TCGGTTTAAAATTTTTAGAATTCATATAATATTGTCATTGAACTCCCATTATTTCACTTTTGGAA
188 TCAGTTTAAAATTTTTAAAATTCATAAAATATTATCATTGAACTCACACTAATCCACTTTT--AA
* *
6783332 AATTTAATTTATTTC-ATTAA-TTTTAAATTTTTTGGCATA
251 AAATTAATTCATTTCGA-TAATTTTTAAATTTTTT-GCATA
6783371 TATTAATTTT
Statistics
Matches: 514, Mismatches: 85, Indels: 43
0.80 0.13 0.07
Matches are distributed among these distances:
327 4 0.01
328 57 0.11
329 152 0.30
330 158 0.31
331 41 0.08
332 99 0.19
333 3 0.01
ACGTcount: A:0.29, C:0.11, G:0.08, T:0.51
Consensus pattern (328 bp):
AAATTTTTTTGAGAGGATTTTTCTTAGTTATTAAATTTTAAAATTCATCAAATATTATTATTTAT
TTCATATTAATTTATTTTTCAAAAATTCATTCATTCCCATAAATTTTGATTTTTTCTTTAAAAAT
CTCATATTTTCAAAATACAGAGTTTTCTACTCCATAATTCTTTCGGGAGGAGTTTTCTCAGTTTA
AAATTTTTAAAATTCATAAAATATTATCATTGAACTCACACTAATCCACTTTTAAAAATTAATTC
ATTTCGATAATTTTTAAATTTTTTGCATAAAATTCTAATTTTTCTGAAATACAGAGTTTTCTACT
TCA
Found at i:6783681 original size:22 final size:23
Alignment explanation
Indices: 6783656--6783715 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
6783646 AAGTTCAGCT
6783656 AAAATAAGAGAAAAAAATAG-AG
1 AAAATAAGAGAAAAAAATAGAAG
*
6783678 AAAAT-AG-GTAGAAAAATAGAAG
1 AAAATAAGAG-AAAAAAATAGAAG
*
6783700 AAAATAGGTAGAAAAA
1 AAAATAAG-AGAAAAA
6783716 TTAGAAAAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
20 1 0.03
21 11 0.37
22 12 0.40
23 1 0.03
24 4 0.13
25 1 0.03
ACGTcount: A:0.68, C:0.00, G:0.20, T:0.12
Consensus pattern (23 bp):
AAAATAAGAGAAAAAAATAGAAG
Found at i:6783690 original size:11 final size:11
Alignment explanation
Indices: 6783676--6783714 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
6783666 AAAAAAATAG
6783676 AGAAAATAGGT
1 AGAAAATAGGT
*
6783687 AGAAAAATA-GA
1 AG-AAAATAGGT
6783698 AGAAAATAGGT
1 AGAAAATAGGT
6783709 AGAAAA
1 AGAAAA
6783715 ATTAGAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
10 6 0.25
11 12 0.50
12 6 0.25
ACGTcount: A:0.64, C:0.00, G:0.23, T:0.13
Consensus pattern (11 bp):
AGAAAATAGGT
Found at i:6783693 original size:12 final size:12
Alignment explanation
Indices: 6783673--6783716 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
6783663 GAGAAAAAAA
6783673 TAGAGAAAATAGG
1 TAGA-AAAATAGG
6783686 TAGAAAAATA-G
1 TAGAAAAATAGG
*
6783697 AAG-AAAATAGG
1 TAGAAAAATAGG
6783708 TAGAAAAAT
1 TAGAAAAAT
6783717 TAGAAAAACA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
10 6 0.22
11 6 0.22
12 11 0.41
13 4 0.15
ACGTcount: A:0.61, C:0.00, G:0.23, T:0.16
Consensus pattern (12 bp):
TAGAAAAATAGG
Found at i:6783716 original size:22 final size:22
Alignment explanation
Indices: 6783668--6783721 Score: 92
Period size: 22 Copynumber: 2.5 Consensus size: 22
6783658 AATAAGAGAA
6783668 AAAAATAG-AGAAAATAGGTAG
1 AAAAATAGAAGAAAATAGGTAG
6783689 AAAAATAGAAGAAAATAGGTAG
1 AAAAATAGAAGAAAATAGGTAG
6783711 AAAAATTAGAA
1 AAAAA-TAGAA
6783722 AAACAAAGGT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 8 0.26
22 18 0.58
23 5 0.16
ACGTcount: A:0.65, C:0.00, G:0.20, T:0.15
Consensus pattern (22 bp):
AAAAATAGAAGAAAATAGGTAG
Found at i:6783731 original size:23 final size:22
Alignment explanation
Indices: 6783668--6783733 Score: 82
Period size: 22 Copynumber: 3.0 Consensus size: 22
6783658 AATAAGAGAA
*
6783668 AAAAATAG-AGAAAATAGGTAG
1 AAAAATAGAAGAAAAAAGGTAG
*
6783689 AAAAATAGAAGAAAATAGGTAG
1 AAAAATAGAAGAAAAAAGGTAG
6783711 AAAAATTAGAA-AAACAAAGGTAG
1 AAAAA-TAGAAGAAA-AAAGGTAG
6783734 TTCTTGTCTT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
21 8 0.20
22 21 0.51
23 12 0.29
ACGTcount: A:0.64, C:0.02, G:0.21, T:0.14
Consensus pattern (22 bp):
AAAAATAGAAGAAAAAAGGTAG
Found at i:6783831 original size:2 final size:2
Alignment explanation
Indices: 6783824--6783854 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
6783814 TATCAACATG
6783824 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6783855 TATGTTTTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:6784941 original size:162 final size:161
Alignment explanation
Indices: 6784658--6785125 Score: 671
Period size: 156 Copynumber: 2.9 Consensus size: 161
6784648 AAAATTAAAC
*
6784658 AATATTTATTTTTTCTAATCTTTTATATTCATATGGGCATCCGTACGGGTATAAAAGATTTCAAA
1 AATATTTATTTTTTCTAATCTTTTATATTC-TATGGGCATCCGTAAGGGTATAAAAGATTTCAAA
* ** ** *
6784723 AACTTTTCGTATTTTTTTGGGCTTTTATTAGGGTACGAAATGGTATTTTCAAAAATAAATAAAAA
65 AACCTTTCGTATTTTTTCAGGCTTCCATTAGGGTACGAAATGGTATTTTTAAAAATAAAT-AAAA
6784788 TTAAATTAAATTAATACTTTCGGGATAAATTCT
129 TTAAATTAAATTAATACTTTCGGGATAAATTCT
*
6784821 AATATTTATTTTTT-TAATCTTTTATATTCCTATGGGCATCTGTAAGGGTATAAAAGATTTCAAA
1 AATATTTATTTTTTCTAATCTTTTATATT-CTATGGGCATCCGTAAGGGTATAAAAGATTTCAAA
* * *
6784885 AACCTTTCGTATTCTTCCAAGCTTCCATTAGGGTACGAAATGGTATTTTTAAAAATAAATAAAAT
65 AACCTTTCGTATTTTTTCAGGCTTCCATTAGGGTACGAAATGGTATTTTTAAAAATAAATAAAAT
* * *
6784950 TAAATTAAATTAGTA-TTCTGGGGATAAATTTT
130 TAAATTAAATTAATACTT-TCGGGATAAATTCT
* *
6784982 AATATTTATTTTTTCTAATC-TTT-TA---TATGGGCATCCGTAGGGGTTTAAAAGATTTCAAAA
1 AATATTTATTTTTTCTAATCTTTTATATTCTATGGGCATCCGTAAGGGTATAAAAGATTTCAAAA
* * *
6785042 ACCTTTCGTATTTTTTCAGGTTTCCATTAGGGTACGAAATGGTATTTTTGAAAGTAAATAAAATT
66 ACCTTTCGTATTTTTTCAGGCTTCCATTAGGGTACGAAATGGTATTTTTAAAAATAAATAAAATT
*
6785107 AAATTGAATTAATACTTTC
131 AAATTAAATTAATACTTTC
6785126 AAGAAAGATT
Statistics
Matches: 275, Mismatches: 26, Indels: 15
0.87 0.08 0.05
Matches are distributed among these distances:
156 104 0.38
157 2 0.01
160 4 0.01
161 48 0.17
162 102 0.37
163 15 0.05
ACGTcount: A:0.34, C:0.10, G:0.13, T:0.42
Consensus pattern (161 bp):
AATATTTATTTTTTCTAATCTTTTATATTCTATGGGCATCCGTAAGGGTATAAAAGATTTCAAAA
ACCTTTCGTATTTTTTCAGGCTTCCATTAGGGTACGAAATGGTATTTTTAAAAATAAATAAAATT
AAATTAAATTAATACTTTCGGGATAAATTCT
Found at i:6790281 original size:20 final size:21
Alignment explanation
Indices: 6790256--6790310 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 21
6790246 CTACCAAGGA
6790256 AATGTATCGATACATT-ATTC
1 AATGTATCGATACATTAATTC
* *
6790276 AATGTATCAATACATTGA-TC
1 AATGTATCGATACATTAATTC
**
6790296 TTTGTATCGATACAT
1 AATGTATCGATACAT
6790311 CTAAAAATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 29 0.97
21 1 0.03
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.40
Consensus pattern (21 bp):
AATGTATCGATACATTAATTC
Found at i:6804183 original size:17 final size:17
Alignment explanation
Indices: 6804163--6804288 Score: 109
Period size: 17 Copynumber: 7.4 Consensus size: 17
6804153 CATCCTCCGC
6804163 AAAAAAAAAACAAAAC-
1 AAAAAAAAAACAAAACA
* * *
6804179 AAAAAAAAGA-GAGACA
1 AAAAAAAAAACAAAACA
6804195 AAAAAAACAAACAAAA-A
1 AAAAAAA-AAACAAAACA
*
6804212 AAAACAAAAACAAAA-A
1 AAAAAAAAAACAAAACA
*
6804228 AAAAACAAACGAAAAAAACA
1 AAAAA-AAA--AACAAAACA
*
6804248 ACAAAAAAAACAAAACA
1 AAAAAAAAAACAAAACA
6804265 ACAAAAAAAAAC-AAACA
1 A-AAAAAAAAACAAAACA
6804282 ACAAAAA
1 A-AAAAA
6804289 GGGTCCGAAT
Statistics
Matches: 90, Mismatches: 12, Indels: 15
0.77 0.10 0.13
Matches are distributed among these distances:
15 3 0.03
16 29 0.32
17 33 0.37
18 11 0.12
19 9 0.10
20 5 0.06
ACGTcount: A:0.83, C:0.13, G:0.03, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAACAAAACA
Found at i:6804197 original size:29 final size:27
Alignment explanation
Indices: 6804165--6804279 Score: 128
Period size: 28 Copynumber: 4.1 Consensus size: 27
6804155 TCCTCCGCAA
*
6804165 AAAAAAAACAAAACAAAAAAAAGAGAGAC
1 AAAAAAAACAAAACAAAAAAAA-ACA-AC
6804194 AAAAAAAAC-AAACAAAAAAAAACAA-
1 AAAAAAAACAAAACAAAAAAAAACAAC
*
6804219 AAACAAAAAAAAAACAAACGAAAAAAACAAC
1 AAA-AAAAACAAAAC-AA--AAAAAAACAAC
6804250 AAAAAAAACAAAACAACAAAAAAA-AAC
1 AAAAAAAACAAAACAA-AAAAAAACAAC
6804277 AAA
1 AAA
6804280 CAACAAAAAG
Statistics
Matches: 76, Mismatches: 4, Indels: 14
0.81 0.04 0.15
Matches are distributed among these distances:
25 3 0.04
26 6 0.08
27 12 0.16
28 21 0.28
29 11 0.14
30 20 0.26
31 3 0.04
ACGTcount: A:0.83, C:0.13, G:0.03, T:0.00
Consensus pattern (27 bp):
AAAAAAAACAAAACAAAAAAAAACAAC
Found at i:6804227 original size:43 final size:43
Alignment explanation
Indices: 6804164--6804288 Score: 157
Period size: 43 Copynumber: 2.9 Consensus size: 43
6804154 ATCCTCCGCA
* * *
6804164 AAAAAAAAAC-AAAACAAAAAAAAGAGAGACAAAAAAAACAAAC
1 AAAAAAAAACAAAAACAAAAAAAAAACAAACAAAAAAAAC-AAC
*
6804207 AAAAAAAAACAAAAACAAAAAAAAAACAAACGAAAAAAACAAC
1 AAAAAAAAACAAAAACAAAAAAAAAACAAACAAAAAAAACAAC
*
6804250 -AAAAAAAAC-AAAACAACAAAAAAAAACAAACAACAAAAA
1 AAAAAAAAACAAAAAC-A-AAAAAAAAACAAACAAAAAAAA
6804289 GGGTCCGAAT
Statistics
Matches: 73, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
41 5 0.07
42 10 0.14
43 33 0.45
44 25 0.34
ACGTcount: A:0.83, C:0.14, G:0.03, T:0.00
Consensus pattern (43 bp):
AAAAAAAAACAAAAACAAAAAAAAAACAAACAAAAAAAACAAC
Found at i:6804235 original size:60 final size:61
Alignment explanation
Indices: 6804162--6804288 Score: 172
Period size: 60 Copynumber: 2.1 Consensus size: 61
6804152 GCATCCTCCG
* * *
6804162 CAAAAAAAAAACAAAAC-AAAAAAA-AGAGAGACAAAA-AAAACAAACAAAAAAAAACAAA-AA
1 CAAAAAAAAAAC-AAACGAAAAAAACA-ACAAAAAAAACAAAAC-AACAAAAAAAAACAAACAA
6804222 CAAAAAAAAAACAAACGAAAAAAACAACAAAAAAAACAAAACAACAAAAAAAAACAAACAA
1 CAAAAAAAAAACAAACGAAAAAAACAACAAAAAAAACAAAACAACAAAAAAAAACAAACAA
6804283 CAAAAA
1 CAAAAA
6804289 GGGTCCGAAT
Statistics
Matches: 60, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
59 4 0.07
60 42 0.70
61 14 0.23
ACGTcount: A:0.83, C:0.14, G:0.03, T:0.00
Consensus pattern (61 bp):
CAAAAAAAAAACAAACGAAAAAAACAACAAAAAAAACAAAACAACAAAAAAAAACAAACAA
Found at i:6804245 original size:25 final size:24
Alignment explanation
Indices: 6804174--6804282 Score: 88
Period size: 24 Copynumber: 4.8 Consensus size: 24
6804164 AAAAAAAAAC
* * * *
6804174 AAAACAAAAAAAAGAGAGACAAAA
1 AAAACAAAAAAAAAACAAACACAA
*
6804198 AAAAC-AAACAAAAA-AAA-AC-A
1 AAAACAAAAAAAAAACAAACACAA
6804218 AAAACAAAAAAAAAACAAACGA-AA
1 AAAACAAAAAAAAAACAAAC-ACAA
6804242 AAAACAACAAAAAAAACAAA-ACAA
1 AAAACAA-AAAAAAAACAAACACAA
* *
6804266 CAAA-AAAAAACAAACAA
1 AAAACAAAAAAAAAACAA
6804283 CAAAAAGGGT
Statistics
Matches: 71, Mismatches: 7, Indels: 16
0.76 0.07 0.17
Matches are distributed among these distances:
20 6 0.08
21 9 0.13
22 15 0.21
23 10 0.14
24 19 0.27
25 12 0.17
ACGTcount: A:0.83, C:0.14, G:0.04, T:0.00
Consensus pattern (24 bp):
AAAACAAAAAAAAAACAAACACAA
Found at i:6804281 original size:47 final size:46
Alignment explanation
Indices: 6804164--6804282 Score: 140
Period size: 47 Copynumber: 2.6 Consensus size: 46
6804154 ATCCTCCGCA
* * *
6804164 AAAAAAAAAC-AAAACAAAAAAAAGAGAGAC--AAAAAAAACAAAC
1 AAAAAAAAACAAAAACAAAAAAAAAACAAACGAAAAAAAAACAAAC
6804207 AAAAAAAAACAAAAACAAAAAAAAAACAAACGAAAAAAACAACAAA-
1 AAAAAAAAACAAAAACAAAAAAAAAACAAACGAAAAAAA-AACAAAC
*
6804253 AAAAACAAAACAACAAA-AAAAAACAAACAA
1 AAAAA-AAAACAA-AAACAAAAAAAAAACAA
6804283 CAAAAAGGGT
Statistics
Matches: 66, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
43 10 0.15
44 17 0.26
46 11 0.17
47 25 0.38
48 3 0.05
ACGTcount: A:0.83, C:0.13, G:0.03, T:0.00
Consensus pattern (46 bp):
AAAAAAAAACAAAAACAAAAAAAAAACAAACGAAAAAAAAACAAAC
Found at i:6804288 original size:1 final size:1
Alignment explanation
Indices: 6804163--6804275 Score: 64
Period size: 1 Copynumber: 113.0 Consensus size: 1
6804153 CATCCTCCGC
* * * * * * * * * *
6804163 AAAAAAAAAACAAAACAAAAAAAAGAGAGACAAAAAAAACAAACAAAAAAAAACAAAAACAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* ** * * * * *
6804228 AAAAACAAACGAAAAAAACAACAAAAAAAACAAAACAACAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
6804276 CAAACAACAA
Statistics
Matches: 77, Mismatches: 35, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
1 77 1.00
ACGTcount: A:0.84, C:0.12, G:0.04, T:0.00
Consensus pattern (1 bp):
A
Found at i:6805800 original size:28 final size:28
Alignment explanation
Indices: 6805702--6805933 Score: 281
Period size: 28 Copynumber: 8.3 Consensus size: 28
6805692 TCACCTTTTC
* * *
6805702 AAAGCCCACAAGTTAGTGGCATCTTTTCA
1 AAAGCCCACAAGTCAGTGGCAAC-CTTCA
* *
6805731 AAAGCCCACAAGTCAATGGCAACC-TCC
1 AAAGCCCACAAGTCAGTGGCAACCTTCA
* *
6805758 AAAGCCCACATGTCAGTGGCAACCTTTA
1 AAAGCCCACAAGTCAGTGGCAACCTTCA
*
6805786 AAAGCCCATAAGTCAGTGGCAACCTTCA
1 AAAGCCCACAAGTCAGTGGCAACCTTCA
*
6805814 GAAGCCCACAAGTCAGTGGCAACCTTCA
1 AAAGCCCACAAGTCAGTGGCAACCTTCA
* *
6805842 GAAGCCCACAAGTCAGTGGCAACCTT-T
1 AAAGCCCACAAGTCAGTGGCAACCTTCA
*
6805869 AAAGCCCACAAGGCAGTGGCAACCTTCA
1 AAAGCCCACAAGTCAGTGGCAACCTTCA
* **
6805897 AAAGCACACAAGTTGGT-GCAACCCTTTCA
1 AAAGCCCACAAGTCAGTGGCAA-CC-TTCA
6805926 AAAGCCCA
1 AAAGCCCA
6805934 TACAAGTTGG
Statistics
Matches: 176, Mismatches: 23, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
27 52 0.30
28 93 0.53
29 31 0.18
ACGTcount: A:0.34, C:0.30, G:0.19, T:0.17
Consensus pattern (28 bp):
AAAGCCCACAAGTCAGTGGCAACCTTCA
Found at i:6805875 original size:83 final size:83
Alignment explanation
Indices: 6805702--6805909 Score: 301
Period size: 83 Copynumber: 2.5 Consensus size: 83
6805692 TCACCTTTTC
* * *
6805702 AAAGCCCACAAGTTAGTGGCATCTTTTCAAAAGCCCACAAGTCAATGGCAACCTCCAAAGCCCAC
1 AAAGCCCACAAGTCAGTGGCAAC-CTTCAAAAGCCCACAAGTCAATGGCAACCTCCAAAGCCCAC
*
6805767 ATGTCAGTGGCAACCTTTA
65 AAGTCAGTGGCAACCTTTA
* * * *
6805786 AAAGCCCATAAGTCAGTGGCAACCTTCAGAAGCCCACAAGTCAGTGGCAACCTTCAGAAGCCCAC
1 AAAGCCCACAAGTCAGTGGCAACCTTCAAAAGCCCACAAGTCAATGGCAACCTCCA-AAGCCCAC
6805851 AAGTCAGTGGCAACCTTT-
65 AAGTCAGTGGCAACCTTTA
* *
6805869 AAAGCCCACAAGGCAGTGGCAACCTTCAAAAGCACACAAGT
1 AAAGCCCACAAGTCAGTGGCAACCTTCAAAAGCCCACAAGT
6805910 TGGTGCAACC
Statistics
Matches: 111, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
83 66 0.59
84 45 0.41
ACGTcount: A:0.35, C:0.30, G:0.19, T:0.17
Consensus pattern (83 bp):
AAAGCCCACAAGTCAGTGGCAACCTTCAAAAGCCCACAAGTCAATGGCAACCTCCAAAGCCCACA
AGTCAGTGGCAACCTTTA
Found at i:6805954 original size:29 final size:27
Alignment explanation
Indices: 6805776--6805954 Score: 92
Period size: 28 Copynumber: 6.4 Consensus size: 27
6805766 CATGTCAGTG
* * * **
6805776 GCAACCTTTAAAAGCCCATAAGTCAGT
1 GCAACCTTCAAAAGCACACAAGTTGGT
* * **
6805803 GGCAACCTTCAGAAGCCCACAAGTCAGT
1 -GCAACCTTCAAAAGCACACAAGTTGGT
* * **
6805831 GGCAACCTTCAGAAGCCCACAAGTCAGT
1 -GCAACCTTCAAAAGCACACAAGTTGGT
* * ***
6805859 GGCAACCTT-TAAAGCCCACAAGGCAGT
1 -GCAACCTTCAAAAGCACACAAGTTGGT
6805886 GGCAACCTTCAAAAGCACACAAGTTGGT
1 -GCAACCTTCAAAAGCACACAAGTTGGT
*
6805914 GCAACCCTTTCAAAAGCCCATACAAGTTGGT
1 GCAA-CC-TTCAAAAG--CACACAAGTTGGT
6805945 AGC-ACCTTCA
1 -GCAACCTTCA
6805955 TCTTTAAATC
Statistics
Matches: 133, Mismatches: 12, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
27 28 0.21
28 76 0.57
29 12 0.09
30 2 0.02
31 13 0.10
32 2 0.02
ACGTcount: A:0.34, C:0.30, G:0.19, T:0.18
Consensus pattern (27 bp):
GCAACCTTCAAAAGCACACAAGTTGGT
Found at i:6806035 original size:52 final size:52
Alignment explanation
Indices: 6805952--6806354 Score: 417
Period size: 52 Copynumber: 7.9 Consensus size: 52
6805942 GGTAGCACCT
* * * *
6805952 TCATCTTTAAATCCAATATCGTTGGCCTTGAATCAGTATATCGGCGTCTTTG
1 TCATCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCGCCTTTG
* * *
6806004 TCATGTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGACGCCTTTA
1 TCATCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCGCCTTTG
* * * * *
6806056 TCATCTTTAAGTCCAATGTTGTTAGCCTTGAATCAGCACATTGGCACC--T-
1 TCATCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCGCCTTTG
* *
6806105 TCATCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATCGGCGTCTTTG
1 TCATCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCGCCTTTG
* * *
6806157 TCATCTTTAAGTCGAATATCGCTGGCCTTGAATCAGCATATTGACGCCTTTG
1 TCATCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCGCCTTTG
* * * * *
6806209 TCATCTTTAAGTCCAATGTCATTGGCCTTGAATCAGCACATTAGCACC--T-
1 TCATCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCGCCTTTG
* * ** * * * *
6806258 TCGTCTTTAAGTCTAATATCACTGGCCTTGAATAAGCATATTGGCATCC-GTA
1 TCATCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGC-GCCTTTG
* * * * *
6806310 ACATTCCTTAA-CCCAATGTCGTTGGCCTTGAATCAGCACATTGGC
1 TCA-TCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGC
6806355 ATTCTTCTCA
Statistics
Matches: 292, Mismatches: 52, Indels: 14
0.82 0.15 0.04
Matches are distributed among these distances:
49 79 0.27
50 4 0.01
51 2 0.01
52 201 0.69
53 6 0.02
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (52 bp):
TCATCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCGCCTTTG
Found at i:6806224 original size:153 final size:153
Alignment explanation
Indices: 6805944--6806298 Score: 575
Period size: 153 Copynumber: 2.3 Consensus size: 153
6805934 TACAAGTTGG
* * *
6805944 TAGCACCTTCATCTTTAAATCCAATATCGTTGGCCTTGAATCAGTATATCGGCGTCTTTGTCATG
1 TAGCACCTTCATCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATCGGCGTCTTTGTCATC
*
6806009 TTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGACGCCTTTATCATCTTTAAGTCCAATG
66 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGACGCCTTTATCATCTTTAAGTCCAATG
**
6806074 TTGTTAGCCTTGAATCAGCACAT
131 TCATTAGCCTTGAATCAGCACAT
*
6806097 TGGCACCTTCATCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATCGGCGTCTTTGTCATC
1 TAGCACCTTCATCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATCGGCGTCTTTGTCATC
* *
6806162 TTTAAGTCGAATATCGCTGGCCTTGAATCAGCATATTGACGCCTTTGTCATCTTTAAGTCCAATG
66 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGACGCCTTTATCATCTTTAAGTCCAATG
*
6806227 TCATTGGCCTTGAATCAGCACAT
131 TCATTAGCCTTGAATCAGCACAT
* * ** *
6806250 TAGCACCTTCGTCTTTAAGTCTAATATCACTGGCCTTGAATAAGCATAT
1 TAGCACCTTCATCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATAT
6806299 TGGCATCCGT
Statistics
Matches: 186, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
153 186 1.00
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (153 bp):
TAGCACCTTCATCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATCGGCGTCTTTGTCATC
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGACGCCTTTATCATCTTTAAGTCCAATG
TCATTAGCCTTGAATCAGCACAT
Found at i:6806267 original size:101 final size:103
Alignment explanation
Indices: 6805944--6806433 Score: 390
Period size: 101 Copynumber: 4.8 Consensus size: 103
6805934 TACAAGTTGG
* * * * *
6805944 TAGCAC-CT-TCATCTTTAAATCCAATATCGTTGGCCTTGAATCAGTATATCGGCGTCTTTGTCA
1 TAGCACTCTATCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCA
* *
6806007 TGTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATAT
66 TCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCACAT
* * * * * * *
6806045 TGACGC-CTTTATCATCTTTAAGTCCAATGTTGTTAGCCTTGAATCAGCACATTGGCACC--T-T
1 T-A-GCACTCTATCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGT
*
6806106 CATCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATAT
64 CATCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCACAT
** * * * * *
6806146 CGGCGTCTTTGTCATCTTTAAGTCGAATATCGCTGGCCTTGAATCAGCATATTGACGCCTTTGTC
1 TAGC-ACTCTATCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTC
* *
6806211 ATCTTTAAGTCCAATGTCATTGGCCTTGAATCAGCACAT
65 ATCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCACAT
* * * * * * **
6806250 TAGCAC-CT-TCGTCTTTAAGTCTAATATCACTGGCCTTGAATAAGCATATTGGCATCC-GTAAC
1 TAGCACTCTATCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGC-GCCTTTGTC
* * *
6806312 ATTCCTTAA-CCCAATGTCGTTGGCCTTGAATCAGCACAT
65 A-TCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCACAT
* * * * ** * * * * * * **
6806351 TGGCATTCTTCTCATCTTCAAGTATAATGTCGCTGACCGTGAATCAGTACATTGACATTCTTT-T
1 TAGCACTC-TATCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGC-GCCTTTGT
*
6806415 CATCTTTAAGCCCAATATC
64 CATCTTTAAGTCCAATATC
6806434 ACTGGTCCCG
Statistics
Matches: 314, Mismatches: 59, Indels: 29
0.78 0.15 0.07
Matches are distributed among these distances:
99 2 0.01
101 160 0.51
102 13 0.04
103 12 0.04
104 126 0.40
105 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (103 bp):
TAGCACTCTATCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCA
TCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCACAT
Found at i:6806336 original size:153 final size:153
Alignment explanation
Indices: 6805944--6806352 Score: 487
Period size: 153 Copynumber: 2.7 Consensus size: 153
6805934 TACAAGTTGG
* ** * * * ** ** *
6805944 TAGCACCTTCATCTTTAAATCCAATATCGTTGGCCTTGAATCAGTATATCGGCGTCTTTGTCATG
1 TAGCACCTTCATCTTTAAGTCCAATATCACTGGCCTTGAATAAGCATATCGGCATCCGTAACATC
* *
6806009 TTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGACGCCTTTATCATCTTTAAGTCCAATG
66 CTTAAGCCCAATATCGTTGGCCTTGAATCAGCATATTGACGCCTTTATCATCTTTAAGTCCAATG
**
6806074 TTGTTAGCCTTGAATCAGCACAT
131 TCATTAGCCTTGAATCAGCACAT
* ** * * ** **
6806097 TGGCACCTTCATCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATCGGCGTCTTTGTCATC
1 TAGCACCTTCATCTTTAAGTCCAATATCACTGGCCTTGAATAAGCATATCGGCATCCGTAACATC
* * * * *
6806162 TTTAAGTCGAATATCGCTGGCCTTGAATCAGCATATTGACGCCTTTGTCATCTTTAAGTCCAATG
66 CTTAAGCCCAATATCGTTGGCCTTGAATCAGCATATTGACGCCTTTATCATCTTTAAGTCCAATG
*
6806227 TCATTGGCCTTGAATCAGCACAT
131 TCATTAGCCTTGAATCAGCACAT
* * *
6806250 TAGCACCTTCGTCTTTAAGTCTAATATCACTGGCCTTGAATAAGCATATTGGCATCCGTAACATT
1 TAGCACCTTCATCTTTAAGTCCAATATCACTGGCCTTGAATAAGCATATCGGCATCCGTAACA-T
* *
6806315 CCTTAA-CCCAATGTCGTTGGCCTTGAATCAGCACATTG
65 CCTTAAGCCCAATATCGTTGGCCTTGAATCAGCATATTG
6806353 GCATTCTTCT
Statistics
Matches: 227, Mismatches: 28, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
153 221 0.97
154 6 0.03
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (153 bp):
TAGCACCTTCATCTTTAAGTCCAATATCACTGGCCTTGAATAAGCATATCGGCATCCGTAACATC
CTTAAGCCCAATATCGTTGGCCTTGAATCAGCATATTGACGCCTTTATCATCTTTAAGTCCAATG
TCATTAGCCTTGAATCAGCACAT
Found at i:6806368 original size:205 final size:205
Alignment explanation
Indices: 6805952--6806434 Score: 512
Period size: 205 Copynumber: 2.4 Consensus size: 205
6805942 GGTAGCACCT
* * * * *
6805952 TCATCTTTAAATCCAATATCGTTGGCCTTGAATCAGTATATCGGCGTCTTTGTCATGTTTAAGTC
1 TCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGTATATTGACGTCTTTGTCATCTTTAAGTC
* * * * ***
6806017 CAATATCGTTGGCCTTGAATCAGCATATTGACGCCTTTATCATCTTTAAGTCCAATGTTGTTAGC
66 CAATATCATTGGCCTTGAATCAGCACATTGACGCCTCTATCATCTTTAAGTCCAATATCACTAGC
* * * * *
6806082 CTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATC
131 CTTGAATAAGCACATTGGCACCTACATCCTTAAGCCCAATATCGTTGGCCTTGAATCAGCACATC
*
6806147 GGCGTCTTTG
196 GGCGTCTTTC
* * *
6806157 TCATCTTTAAGTCGAATATCGCTGGCCTTGAATCAGCATATTGACGCCTTTGTCATCTTTAAGTC
1 TCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGTATATTGACGTCTTTGTCATCTTTAAGTC
* * * *
6806222 CAATGTCATTGGCCTTGAATCAGCACATT-A-GCAC-CT-TCGTCTTTAAGTCTAATATCACTGG
66 CAATATCATTGGCCTTGAATCAGCACATTGACGC-CTCTATCATCTTTAAGTCCAATATCACTAG
* *
6806283 CCTTGAATAAGCATATTGGCATCCGTAACATTCCTTAA-CCCAATGTCGTTGGCCTTGAATCAGC
130 CCTTGAATAAGCACATTGGCA-CC-T-ACA-TCCTTAAGCCCAATATCGTTGGCCTTGAATCAGC
* *
6806347 ACATTGGCAT-TCTTC
191 ACATCGGCGTCT-TTC
* ** * * * * * *
6806362 TCATCTTCAAGTATAATGTCGCTGACCGTGAATCAGTACATTGACATTCTTT-TCATCTTTAAGC
1 TCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGTATATTGAC-GTCTTTGTCATCTTTAAGT
6806426 CCAATATCA
65 CCAATATCA
6806435 CTGGTCCCGA
Statistics
Matches: 230, Mismatches: 41, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
202 37 0.16
203 5 0.02
204 4 0.02
205 174 0.76
206 10 0.04
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (205 bp):
TCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGTATATTGACGTCTTTGTCATCTTTAAGTC
CAATATCATTGGCCTTGAATCAGCACATTGACGCCTCTATCATCTTTAAGTCCAATATCACTAGC
CTTGAATAAGCACATTGGCACCTACATCCTTAAGCCCAATATCGTTGGCCTTGAATCAGCACATC
GGCGTCTTTC
Found at i:6806380 original size:52 final size:52
Alignment explanation
Indices: 6805952--6806430 Score: 345
Period size: 52 Copynumber: 9.3 Consensus size: 52
6805942 GGTAGCACCT
* * * * * * *
6805952 TCATCTTTAAATCCAATATCGTTGGCCTTGAATCAGTATATCGGC-GTCTTTG
1 TCATCTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCATTC-TTA
* * * *
6806004 TCATGTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGACGC-CT-TTA
1 TCATCTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTG--GCATTCTTA
* * *
6806056 TCATCTTTAAGTCCAATGTTGTTAGCCTTGAATCAGCACATTGGCA--CCT-
1 TCATCTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCATTCTTA
* * * * *
6806105 TCATCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATCGGC-GTCTTTG
1 TCATCTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCATTC-TTA
* * * * * *
6806157 TCATCTTTAAGTCGAATATCGCTGGCCTTGAATCAGCATATTGACGC-CT-TTG
1 TCATCTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTG--GCATTCTTA
* * *
6806209 TCATCTTTAAGTCCAATGTCATTGGCCTTGAATCAGCACATTAGCA--CCT-
1 TCATCTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCATTCTTA
* * * ** * * * *
6806258 TCGTCTTTAAGTCTAATATCACTGGCCTTGAATAAGCATATTGGCATCCGTA
1 TCATCTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCATTCTTA
* * * *
6806310 ACATTCCTTAA-CCCAATGTCGTTGGCCTTGAATCAGCACATTGGCATTCTTC
1 TCA-TCTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCATTCTTA
* ** * * * * * *
6806362 TCATCTTCAAGTATAATGTCGCTGACCGTGAATCAGTACATTGACATTCTTT
1 TCATCTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCATTCTTA
*
6806414 TCATCTTTAAGCCCAAT
1 TCATCTTTAAGTCCAAT
6806431 ATCACTGGTC
Statistics
Matches: 344, Mismatches: 66, Indels: 34
0.77 0.15 0.08
Matches are distributed among these distances:
49 79 0.23
50 7 0.02
51 8 0.02
52 238 0.69
53 6 0.02
54 6 0.02
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (52 bp):
TCATCTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCATTCTTA
Found at i:6806394 original size:153 final size:152
Alignment explanation
Indices: 6805944--6806438 Score: 404
Period size: 153 Copynumber: 3.2 Consensus size: 152
6805934 TACAAGTTGG
* ** * * * ** ** *
6805944 TAGCACCTTCATCTTTAAATCCAATATCGTTGGCCTTGAATCAGTATATCGGCGTCTTTGTCATG
1 TAGCACCTTCATCTTTAAGTCCAATATCACTGGCCTTGAATAAGCATATCGGCATCCGTAACATC
* * * * * * *
6806009 TTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGACGCCTTTATCATCTTTAAGTCCAATG
66 CTTAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGA-GCCTTTCTCATCTTCAAGTACAATG
** * *
6806074 T-TGTTAGCCTTGAATCAGCACAT
130 TCACTGA-CCGTGAATCAGCACAT
* ** * * ** **
6806097 TGGCACCTTCATCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATCGGCGTCTTTGTCATC
1 TAGCACCTTCATCTTTAAGTCCAATATCACTGGCCTTGAATAAGCATATCGGCATCCGTAACATC
* * * * * * *
6806162 TTTAAGTCGAATATCGCTGGCCTTGAATCAGCATATTGACGCCTTTGTCATCTTTAAGTCCAATG
66 CTTAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGA-GCCTTTCTCATCTTCAAGTACAATG
* * *
6806227 TCATTGGCCTTGAATCAGCACAT
130 TCACTGACCGTGAATCAGCACAT
* * *
6806250 TAGCACCTTCGTCTTTAAGTCTAATATCACTGGCCTTGAATAAGCATATTGGCATCCGTAACATT
1 TAGCACCTTCATCTTTAAGTCCAATATCACTGGCCTTGAATAAGCATATCGGCATCCGTAACA-T
* * * *
6806315 CCTTAA-CCCAATGTCGTTGGCCTTGAATCAGCACATTG-GCATTCTTCTCATCTTCAAGTATAA
65 CCTTAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGAGC-CT-TTCTCATCTTCAAGTACAA
* *
6806378 TGTCGCTGACCGTGAATCAGTACAT
128 TGTCACTGACCGTGAATCAGCACAT
* *
6806403 T-GACATTCTTTTCATCTTTAAGCCCAATATCACTGG
1 TAG-CA--C-CTTCATCTTTAAGTCCAATATCACTGG
6806439 TCCCGAATTA
Statistics
Matches: 291, Mismatches: 43, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
151 2 0.01
152 2 0.01
153 256 0.88
154 7 0.02
155 1 0.00
156 23 0.08
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.35
Consensus pattern (152 bp):
TAGCACCTTCATCTTTAAGTCCAATATCACTGGCCTTGAATAAGCATATCGGCATCCGTAACATC
CTTAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGAGCCTTTCTCATCTTCAAGTACAATGT
CACTGACCGTGAATCAGCACAT
Found at i:6820521 original size:88 final size:87
Alignment explanation
Indices: 6820349--6820524 Score: 284
Period size: 88 Copynumber: 2.0 Consensus size: 87
6820339 CCTCAAGAAG
*
6820349 CTTATCTTTCTCTTTTAAAAGGCTCACACAAGTTAGTGGCACTTTTAGCCCTCAAAGATCAAGAT
1 CTTATCTTTCTCTTTTAAAAGGCTCACACAAGTTAGTGGCACTTTTAGCCCTCAAAGAGCAAGAT
6820414 GCCTATTCCTTTTTAAAGCCCA
66 GCCTATTCCTTTTTAAAGCCCA
* *
6820436 CTTATCTCTT-TCTTTTAAGAA-GCTCACACAAGTTGGTGGCACTTTTTAGCCCTCAAAGAGCAG
1 CTTATCT-TTCTCTTTTAA-AAGGCTCACACAAGTTAGTGGCAC-TTTTAGCCCTCAAAGAGCAA
6820499 GATGCCTATTCCTTTTTAAAGCCCA
63 GATGCCTATTCCTTTTTAAAGCCCA
6820524 C
1 C
6820525 ACAAGTTGGT
Statistics
Matches: 83, Mismatches: 3, Indels: 5
0.91 0.03 0.05
Matches are distributed among these distances:
87 35 0.42
88 48 0.58
ACGTcount: A:0.26, C:0.26, G:0.14, T:0.34
Consensus pattern (87 bp):
CTTATCTTTCTCTTTTAAAAGGCTCACACAAGTTAGTGGCACTTTTAGCCCTCAAAGAGCAAGAT
GCCTATTCCTTTTTAAAGCCCA
Found at i:6820545 original size:62 final size:62
Alignment explanation
Indices: 6820455--6821377 Score: 614
Period size: 63 Copynumber: 14.4 Consensus size: 62
6820445 TTCTTTTAAG
* * * *
6820455 AAGCTCACACAAGTTGGTGGCACTTTTTAGCCCTCAAAGAGCAGGATGCCTATTCCTTTTTA
1 AAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTTA
** * ** *
6820517 AAGCCCACACAAGTTGGTGTTACCTTTTAGTCCTCAAAGAGTAGGACACCTTTTGCTTTTTAA
1 AAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTT-A
* * ** * * * * **
6820580 AAGCCTACATAAACTCGTAGCACCTTTTAGTCCTCAAAAAGCAGGATGCTTTTTTTTATTTTAA
1 AAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCT-TTTT-A
* * * * *
6820644 AAGCTCACACAAGTTGGTGGCACATTTTTAGTCCTCAAAAAGTAGAACGCATTTCCTTTTCC-TT
1 AAGCCCACACAAGTTGGTGGCAC-CTTTTAGTCCTC--AAAG-AGCA-GGA-TGCCTTTTCCTTT
6820708 TTA
60 TTA
* * * *
6820711 AAGCTCACACAAGTTGGTGGCACCTTTTTAGTCCTCAAAGAGTAGGACGCATTTTCCTTTTTTA
1 AAGCCCACACAAGTTGGTGGCACC-TTTTAGTCCTCAAAGAGCAGGATGCCTTTTCC-TTTTTA
* * * * * * *
6820775 AAGCCTACACAAATCGGT-TCACCTTTTAGTCCTTAAAGAGTAGGATGCCTTTTCCTTTTAA
1 AAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTTA
* * * **
6820836 AAGCCCACACAAGTTGGTGGCATCTTTTAGTCCTCAAAGAGCAGAATGCTTTTTTTTTTTCTTTT
1 AAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGC---CTTTTCCT-TTTT
6820901 A
62 A
** * * * * * * * *
6820902 AAGCTTACATAAGCTGGTAGCACCTTTTTAGTCCTTAAAAAACAGG-TCGTCTTTTTCTTTTTA
1 AAGCCCACACAAGTTGGTGGCACC-TTTTAGTCCTCAAAGAGCAGGAT-GCCTTTTCCTTTTTA
* * * ** * * * *
6820965 AAGCCCACATAAGCTGGTGTCATTTTTTTAGTCATCAAAAAGCAAGACGCCTTTTCC-TTTTA
1 AAGCCCACACAAGTTGGTGGCA-CCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTTA
* * * * * * *
6821027 GAAGCCCACACAAATCGATGGCACCTTTTAGTCTTCAAAAAGCAGGA-GGCTTTTCTTTTTCTTT
1 -AAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTC---CT-TTT
6821091 TA
61 TA
* * * * **
6821093 AAGCCCATACAAGCTAGTGGCACATTTTTAGTCCTCAAAGAGCAGGACACCTTTTCCTCTTTTA
1 AAGCCCACACAAGTTGGTGGCAC-CTTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCT-TTTTA
* * ** * *
6821157 AAGCCCACACAAGCTGGTGGTACCTTTTAGTCCTTGAAGAGTAGGATGTCTTTTCCTTTTTAAAA
1 AAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTT---A
* * * ** ** *
6821222 AAGGCCCACACAAGCTGGTGGCACCTTTTATTCCTCAAAGAGAAAAACACATTTTCCTTTTAAAA
1 AA-GCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTT----
*
6821287 AA
61 TA
* * * * * * *
6821289 AAGGCTACATAAGTTGGTAGCACCTTTTAGTCCTTAAAGAGCAAGATGCATTTTCCTCTTTTA
1 AAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCT-TTTTA
* * * *
6821352 AAGCTCACATAAGCTGGTGACACCTT
1 AAGCCCACACAAGTTGGTGGCACCTT
6821378 ATAAAAGCCC
Statistics
Matches: 667, Mismatches: 157, Indels: 73
0.74 0.18 0.08
Matches are distributed among these distances:
61 27 0.04
62 141 0.21
63 160 0.24
64 77 0.12
65 40 0.06
66 139 0.21
67 68 0.10
68 7 0.01
69 2 0.00
70 6 0.01
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.33
Consensus pattern (62 bp):
AAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTTA
Found at i:6821019 original size:192 final size:188
Alignment explanation
Indices: 6820447--6821377 Score: 732
Period size: 191 Copynumber: 4.8 Consensus size: 188
6820437 TTATCTCTTT
* * * * * * *
6820447 CTTTTAAGAAGCTCACACAAGTTGGTGGCACTTTTTAGCCCTCAAAGAGCAGGATGC----CTAT
1 CTTTTAA-AAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGAACGCTTTTCTTT
* * * ** * * *
6820508 TCCTTTTTAAAGCCCACACAAGTTGGTGTTACC-TTTTAGTCCTCAAAGAGTAGGACACCTTTTG
65 TTC-TTTTAAAGCTCACACAAGCTGGTGGCACCTTTTTAGTCCTCAAAGAGCAGGAC-GCTTTTC
* * * * * * *
6820572 CTTTTTAAAAGCCTACATAAACTCGTAG-CACCTTTTAGTCCTCAAAAAGCAGGATGCTTTTTTT
128 CTTTTT-AAAGCCCACA-AAGCTGGT-GTCACCTTTTAGTCCTTAAAGAGTAGGATGC--CTTTT
*
6820636 T
188 C
* * * * *
6820637 ATTTTAAAAGCTCACACAAGTTGGTGGCACATTTTTAGTCCTCAAAAAGTAGAACGCATTTCCTT
1 CTTTTAAAAGCCCACACAAGTTGGTGGCAC-CTTTTAGTCCTCAAAAAGCAGAACGC-TTTTCTT
* * *
6820702 TTCCTTTTAAAGCTCACACAAGTTGGTGGCACCTTTTTAGTCCTCAAAGAGTAGGACGCATTTTC
64 TTTCTTTTAAAGCTCACACAAGCTGGTGGCACCTTTTTAGTCCTCAAAGAGCAGGACGC-TTTTC
*
6820767 CTTTTTTAAAGCCTACACAAATC-GGT-TCACCTTTTAGTCCTTAAAGAGTAGGATGCCTTTTC
128 C-TTTTTAAAGCC--CACAAAGCTGGTGTCACCTTTTAGTCCTTAAAGAGTAGGATGCCTTTTC
* * * *
6820829 CTTTTAAAAGCCCACACAAGTTGGTGGCATCTTTTAGTCCTCAAAGAGCAGAATGCTTTTTTTTT
1 CTTTTAAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGAACGC-TTTTCTTT
* * * * * * * *
6820894 TTCTTTTAAAGCTTACATAAGCTGGTAGCACCTTTTTAGTCCTTAAAAAACAGGTCGTCTTTTTC
65 TTCTTTTAAAGCTCACACAAGCTGGTGGCACCTTTTTAGTCCTCAAAGAGCAGGACG-CTTTTCC
** * * * * * *
6820959 TTTTTAAAGCCCACATAAGCTGGTGTCATTTTTTTAGTCATCAAAAAGCAAGACGCCTTTTC
129 TTTTTAAAGCCCACA-AAGCTGGTGTCA-CCTTTTAGTCCTTAAAGAGTAGGATGCCTTTTC
* * * * * * *
6821021 CTTTTAGAAGCCCACACAAATCGATGGCACCTTTTAGTCTTCAAAAAGCAGGAGGCTTTTCTTTT
1 CTTTTAAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGAACGCTTTTCTTTT
* * * * *
6821086 TCTTTTAAAGCCCATACAAGCTAGTGGCACATTTTTAGTCCTCAAAGAGCAGGACACCTTTTCCT
66 TCTTTTAAAGCTCACACAAGCTGGTGGCACCTTTTTAGTCCTCAAAGAGCAGGAC-GCTTTTCCT
* *
6821151 CTTTTAAAGCCCACACAAGCTGGTGGT-ACCTTTTAGTCCTTGAAGAGTAGGATGTCTTTTC
130 -TTTTAAAGCCCACA-AAGCTGGT-GTCACCTTTTAGTCCTTAAAGAGTAGGATGCCTTTTC
* * * * * *
6821212 CTTTTTAAAAAAGGCCCACACAAGCTGGTGGCACCTTTTATTCCTCAAAGAGAAAAACACATTTT
1 C-TTTT--AAAA-GCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGAACGC-TTTT
* ***** * * * * * *
6821277 CCTTTTAAAAAAAAGGCT-ACATAAGTTGGTAGCACC-TTTTAGTCCTTAAAGAGCAAGATGCAT
61 CTTTTTCTTTTAAA-GCTCACACAAGCTGGTGGCACCTTTTTAGTCCTCAAAGAGCAGGACGC-T
* *
6821340 TTTCCTCTTTTAAAGCTCACATAAGCTGGTGACACCTT
124 TTTCCT-TTTTAAAGCCCACA-AAGCTGGTGTCACCTT
6821378 ATAAAAGCCC
Statistics
Matches: 596, Mismatches: 117, Indels: 51
0.78 0.15 0.07
Matches are distributed among these distances:
188 4 0.01
189 26 0.04
190 41 0.07
191 166 0.28
192 131 0.22
193 2 0.00
194 58 0.10
195 131 0.22
196 32 0.05
197 5 0.01
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (188 bp):
CTTTTAAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAGAACGCTTTTCTTTT
TCTTTTAAAGCTCACACAAGCTGGTGGCACCTTTTTAGTCCTCAAAGAGCAGGACGCTTTTCCTT
TTTAAAGCCCACAAAGCTGGTGTCACCTTTTAGTCCTTAAAGAGTAGGATGCCTTTTC
Found at i:6821277 original size:66 final size:67
Alignment explanation
Indices: 6821095--6821353 Score: 201
Period size: 66 Copynumber: 3.9 Consensus size: 67
6821085 TTCTTTTAAA
* * * * ** *
6821095 GCCCATACAAGCTAGTGGCACATTTTTAGTCCTCAAAGAGCAGGACACCTTTTCCTCTTTT---A
1 GCCCACACAAGCTGGTGGCAC-CTTTTAGTCCTCAAAGAGAAAAACACATTTTCCTCTTTTAAAA
6821157 AA-
65 AAG
* ** ** ***
6821159 GCCCACACAAGCTGGTGGTACCTTTTAGTCCTTGAAGAGTAGGATGTC-TTTTCCT-TTTTAAAA
1 GCCCACACAAGCTGGTGGCACCTTTTAGTCCTCAAAGAG-AAAAACACATTTTCCTCTTTTAAAA
6821222 AAG
65 AAG
* *
6821225 GCCCACACAAGCTGGTGGCACCTTTTATTCCTCAAAGAGAAAAACACATTTTCCT-TTTAAAAAA
1 GCCCACACAAGCTGGTGGCACCTTTTAGTCCTCAAAGAGAAAAACACATTTTCCTCTTT-TAAAA
6821289 AAG
65 AAG
* * * * * * * **
6821292 G-CTACATAAGTTGGTAGCACCTTTTAGTCCTTAAAGAGCAAGATGCATTTTCCTCTTTTAAA
1 GCCCACACAAGCTGGTGGCACCTTTTAGTCCTCAAAGAGAAAAACACATTTTCCTCTTTTAAA
6821354 GCTCACATAA
Statistics
Matches: 154, Mismatches: 33, Indels: 14
0.77 0.16 0.07
Matches are distributed among these distances:
62 4 0.03
63 22 0.14
64 20 0.13
65 6 0.04
66 91 0.59
67 11 0.07
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (67 bp):
GCCCACACAAGCTGGTGGCACCTTTTAGTCCTCAAAGAGAAAAACACATTTTCCTCTTTTAAAAA
AG
Found at i:6821277 original size:129 final size:126
Alignment explanation
Indices: 6820448--6821377 Score: 499
Period size: 129 Copynumber: 7.3 Consensus size: 126
6820438 TATCTCTTTC
* * * * * * ** * *
6820448 TTTTAAGAAGCTCACACAAGTTGGTGGCACTTTTTAGCCCTCAAAGAGCAGGATGCCTATTCCT-
1 TTTTAA-AAGCCCACACAAGCTGGTGGCACCTTTTAGTCCTCAAAGAGAAAGACACATTTTCCTC
* * ** * * * *** *
6820512 TTTTAAAGCCCACACAAGTTGGTGTTACCTTTTAGTCCTCAAAGAGTAGGACACCTTTTGCT
65 TTTTAAAGCCCACACAAATCGGTGGCACCTTTTAGTCCTTAAAAAGCAGGATGTCTTTTCCT
* * * * * * * * ** * ** *
6820574 TTTTAAAAGCCTACATAAACTCGTAGCACCTTTTAGTCCTCAAAAAGCAGGATGCTTTTTTTTAT
1 TTTTAAAAGCCCACACAAGCTGGTGGCACCTTTTAGTCCTCAAAGAGAAAGACACATTTTCCTCT
* * * * * * *
6820639 TTTAAAAGCTCACACAAGTTGGTGGCACATTTTTAGTCCTCAAAAAGTAGAACGCATTTCCTTTT
66 TTT-AAAGCCCACACAAATCGGTGGCAC-CTTTTAGTCCTTAAAAAGCAG---G-ATGT-CTTTT
6820704 CC-
124 CCT
* * * * * *
6820706 TTTT-AAAGCTCACACAAGTTGGTGGCACCTTTTTAGTCCTCAAAGAGTAGGACGCATTTTCCTT
1 TTTTAAAAGCCCACACAAGCTGGTGGCACC-TTTTAGTCCTCAAAGAGAAAGACACATTTTCCTC
* * * * *
6820770 TTTTAAAGCCTACACAAATCGGT-TCACCTTTTAGTCCTTAAAGAGTAGGATGCCTTTTCC-
65 TTTTAAAGCCCACACAAATCGGTGGCACCTTTTAGTCCTTAAAAAGCAGGATGTCTTTTCCT
* * *** *
6820830 TTTTAAAAGCCCACACAAGTTGGTGGCATCTTTTAGTCCTCAAAGAGCAGAATG-CTTTTTTTTT
1 TTTTAAAAGCCCACACAAGCTGGTGGCACCTTTTAGTCCTCAAAGAG-A-AA-GAC-ACATTTTC
* ** * * * *
6820894 TTCTTTTAAAGCTTACA-TAAGCTGGTAGCACCTTTTTAGTCCTTAAAAAACAGG-TCGTCTTTT
62 CTCTTTTAAAGCCCACACAAATC-GGTGGCACC-TTTTAGTCCTTAAAAAGCAGGAT-GTCTTTT
*
6820957 TCT
124 CCT
* * ** * * * * *
6820960 TTTT-AAAGCCCACATAAGCTGGTGTCATTTTTTTAGTCATCAAAAAGCAAGACGCCTTTT-C-C
1 TTTTAAAAGCCCACACAAGCTGGTGGCA-CCTTTTAGTCCTCAAAGAGAAAGACACATTTTCCTC
* * *
6821022 TTTTAGAAGCCCACACAAATCGATGGCACCTTTTAGT-CTTCAAAAAGCAGGA-GGCTTTTCTTT
65 TTTTA-AAGCCCACACAAATCGGTGGCACCTTTTAGTCCTT-AAAAAGCAGGATGTCTTTTC--C
6821085 T
126 T
* * * * * * *
6821086 TCTTTTAAAGCCCATACAAGCTAGTGGCACATTTTTAGTCCTCAAAGAGCAGGACACCTTTTCCT
1 T-TTTAAAAGCCCACACAAGCTGGTGGCAC-CTTTTAGTCCTCAAAGAGAAAGACACATTTTCCT
* * * * *
6821151 CTTTTAAAGCCCACAC-AAGCTGGTGGTACCTTTTAGTCCTTGAAGAGTAGGATGTCTTTTCCT
64 CTTTTAAAGCCCACACAAATC-GGTGGCACCTTTTAGTCCTTAAAAAGCAGGATGTCTTTTCCT
* *
6821214 TTTTAAAAAAGGCCCACACAAGCTGGTGGCACCTTTTATTCCTCAAAGAGAAAAACACATTTTCC
1 TTTT--AAAA-GCCCACACAAGCTGGTGGCACCTTTTAGTCCTCAAAGAGAAAGACACATTTTCC
* * * * * * * * *
6821279 T-TTTAAAAAAAAGGCTACATAAGTTGGTAGCACCTTTTAGTCCTTAAAGAGCAAGATG-CATTT
63 TCTTT----TAAAGCCCACACAAATCGGTGGCACCTTTTAGTCCTTAAAAAGCAGGATGTC-TTT
6821342 TCCT
123 TCCT
* * *
6821346 CTTTT-AAAGCTCACATAAGCTGGTGACACCTT
1 -TTTTAAAAGCCCACACAAGCTGGTGGCACCTT
6821378 ATAAAAGCCC
Statistics
Matches: 631, Mismatches: 128, Indels: 87
0.75 0.15 0.10
Matches are distributed among these distances:
124 37 0.06
125 90 0.14
126 32 0.05
127 57 0.09
128 81 0.13
129 148 0.23
130 61 0.10
131 35 0.06
132 79 0.13
133 11 0.02
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (126 bp):
TTTTAAAAGCCCACACAAGCTGGTGGCACCTTTTAGTCCTCAAAGAGAAAGACACATTTTCCTCT
TTTAAAGCCCACACAAATCGGTGGCACCTTTTAGTCCTTAAAAAGCAGGATGTCTTTTCCT
Found at i:6821497 original size:63 final size:63
Alignment explanation
Indices: 6821381--6821540 Score: 191
Period size: 63 Copynumber: 2.5 Consensus size: 63
6821371 ACACCTTATA
* *
6821381 AAAGCCCACACAAGTTAGTGGCACC-TTTTAGTCCTCAAAAAGCAGGACATTTTTT-TTTCTGTT
1 AAAGCACACACAAGTTGGTGGCACCTTTTTAGTCCTCAAAAAGCAGGACATTTTTTCTTT-T-TT
* **
6821444 AAAGCTCACACAAGTTGGTGGCACCTTTTTAGTCCTCAAAAAGCAGG-TTTTTTTTCCTTTTTT
1 AAAGCACACACAAGTTGGTGGCACCTTTTTAGTCCTCAAAAAGCAGGACATTTTTT-CTTTTTT
* * * *
6821507 AAAGCACACATAAGCTGGTGTCACATTTTTAGTC
1 AAAGCACACACAAGTTGGTGGCACCTTTTTAGTC
6821541 ATTAAAGAGT
Statistics
Matches: 85, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
63 60 0.71
64 22 0.26
65 3 0.04
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.35
Consensus pattern (63 bp):
AAAGCACACACAAGTTGGTGGCACCTTTTTAGTCCTCAAAAAGCAGGACATTTTTTCTTTTTT
Found at i:6821844 original size:20 final size:20
Alignment explanation
Indices: 6821819--6821913 Score: 129
Period size: 20 Copynumber: 4.8 Consensus size: 20
6821809 TTTTCACAAT
6821819 TTGTATCGATACATTGTTCA
1 TTGTATCGATACATTGTTCA
6821839 TTGTATCGATACATT-TCTCA
1 TTGTATCGATACATTGT-TCA
*
6821859 TTGTATCGATACATTGCTCA
1 TTGTATCGATACATTGTTCA
* **
6821879 TTGTATCGATGCATTGTAAA
1 TTGTATCGATACATTGTTCA
*
6821899 ATGTATCGATACATT
1 TTGTATCGATACATT
6821914 CAGGCATTTT
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
19 1 0.02
20 65 0.98
ACGTcount: A:0.27, C:0.16, G:0.15, T:0.42
Consensus pattern (20 bp):
TTGTATCGATACATTGTTCA
Found at i:6824466 original size:79 final size:79
Alignment explanation
Indices: 6824316--6824613 Score: 392
Period size: 79 Copynumber: 3.8 Consensus size: 79
6824306 CGCAATCAGA
* * *
6824316 GATACCCCAACCCCGATTTTATTTCCAAAACATCAATT-TCT-C-ATCGGGGATACTCCAACACC
1 GATACTCCAACCCCGATTTTATTTCTAAAACATCAATTCTCTACAATCGGGGATACTCCAACCCC
6824378 ATTATTTTCGAGGG
66 ATTATTTTCGAGGG
** * * *
6824392 GATACTCCAACCCCGGCTTTATTTCTAAAATATTAATT-TCTTATAATCGGGGATACTCCAACCC
1 GATACTCCAACCCCGATTTTATTTCTAAAACATCAATTCTC-TACAATCGGGGATACTCCAACCC
6824456 CATTATTTTCGAGGG
65 CATTATTTTCGAGGG
* * * *
6824471 GATACTCCAACCTCGATTTTATTTCTAAAACACCAATTCTCCACAATCAGGGATACTCCAACCCC
1 GATACTCCAACCCCGATTTTATTTCTAAAACATCAATTCTCTACAATCGGGGATACTCCAACCCC
* *
6824536 GTTATTTCCGAGGG
66 ATTATTTTCGAGGG
*
6824550 GATACTCCAACCCC-AGTTTTATTTCTAAAACAAT-AATTCTCTACAATTGGGGATACTCCAACC
1 GATACTCCAACCCCGA-TTTTATTTCTAAAAC-ATCAATTCTCTACAATCGGGGATACTCCAACC
6824613 C
64 C
6824614 TAGTTTTATT
Statistics
Matches: 192, Mismatches: 24, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
76 34 0.18
77 1 0.01
78 1 0.01
79 153 0.80
80 3 0.02
ACGTcount: A:0.30, C:0.28, G:0.12, T:0.30
Consensus pattern (79 bp):
GATACTCCAACCCCGATTTTATTTCTAAAACATCAATTCTCTACAATCGGGGATACTCCAACCCC
ATTATTTTCGAGGG
Found at i:6824687 original size:75 final size:75
Alignment explanation
Indices: 6824598--6824819 Score: 232
Period size: 79 Copynumber: 2.9 Consensus size: 75
6824588 CTCTACAATT
*
6824598 GGGGATACTCCAACCCTAGTTTTATTTCCAAAACATCAATTT-TTCATCGGGATACTCCAACCCC
1 GGGGATACTCCAACCCT-GTTTTATTTCCAAAACATCAATTTAATCATCGGGATACTCCAACCCC
6824662 ATTATTTTCGA
65 ATTATTTTCGA
* * * *
6824673 GGGGATACTCCAACCCTGACTTTATTTCCAAAATATTAATTTAACATAATCGGGGATACTCCAAC
1 GGGGATACTCCAACCCTG-TTTTATTTCCAAAACATCAATTT-A-ATCATC-GGGATACTCCAAC
*
6824738 CCCGTTATTTTCGA
62 CCCATTATTTTCGA
* * * * * *
6824752 GAGGATACTCCAACCTCGGTTTTCTTTCTAAAACACCAATTCTCCA-CAATCGGAGATACTCCAA
1 GGGGATACTCCAACC-CTGTTTTATTTCCAAAACATCAATT-T-AATC-ATCGG-GATACTCCAA
6824816 CCCC
61 CCCC
6824820 GGTTTTATTT
Statistics
Matches: 121, Mismatches: 17, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
74 1 0.01
75 37 0.31
78 6 0.05
79 74 0.61
80 3 0.02
ACGTcount: A:0.29, C:0.28, G:0.13, T:0.30
Consensus pattern (75 bp):
GGGGATACTCCAACCCTGTTTTATTTCCAAAACATCAATTTAATCATCGGGATACTCCAACCCCA
TTATTTTCGA
Found at i:6824687 original size:205 final size:204
Alignment explanation
Indices: 6824389--6825330 Score: 800
Period size: 205 Copynumber: 4.5 Consensus size: 204
6824379 TTATTTTCGA
* * * * *
6824389 GGGGATACTCCAACCCCGGCTTTATTTCTAAAATATTAATTTCTTATAATCGGGGATACTCCAAC
1 GGGGATACTCCAACCCCGGTTTTATTTCCAAAACATCAA-TT-TT-TCATCGGGGATACTCCAAC
* *
6824454 CCCATTATTTTCGAGGGGATACTCCAACCTCGATTTTATTTCTAAAACACCAATTCTCCACAATC
63 CCCGTTATTTTCGAGGGGATACTCCAACC-CGACTTTATTTCTAAAACACCAATT-TCCACAATC
**
6824519 AGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCAGTTTTATTTCTAAAACAAT
126 AGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCAGTTTTATTTCTAAAACACC
* *
6824584 AATTCTCTACAATT
191 AATTCTCCACAATC
**
6824598 GGGGATACTCCAACCCTAGTTTTATTTCCAAAACATCAATTTTTCATC-GGGATACTCCAACCCC
1 GGGGATACTCCAACCCCGGTTTTATTTCCAAAACATCAATTTTTCATCGGGGATACTCCAACCCC
* * * ** * * *
6824662 ATTATTTTCGAGGGGATACTCCAACCCTGACTTTATTTCCAAAATATTAATTTAACATAATCGGG
66 GTTATTTTCGAGGGGATACTCCAACCC-GACTTTATTTCTAAAACACCAATTT-CCACAATCAGG
* * * * *
6824727 GATACTCCAACCCCGTTATTTTCGAGAGGATACTCCAACCTCGGTTTTCTTTCTAAAACACCAAT
129 GATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCAGTTTTATTTCTAAAACACCAAT
6824792 TCTCCACAATC
194 TCTCCACAATC
* *
6824803 GGAGATACTCCAACCCCGGTTTTATTTTCAAAACATCAATTTTTCATCGGGGATACTCCAACCCC
1 GGGGATACTCCAACCCCGGTTTTATTTCCAAAACATCAATTTTTCATCGGGGATACTCCAACCCC
* * * * ** *
6824868 GGTTTTATTTCCA----AAACAT--AA----A--TT-TTTCATCAAGGATACTCCAA-CCCCGTC
66 -GTTAT-TTTCGAGGGGATAC-TCCAACCCGACTTTATTTC-T-AA--A-ACACCAATTTCC-AC
* * *
6824919 ATTTTCGAGGAGATACTCCAACCCTGACTTTATTTCTAAAATATTAATTTCTCATAATCGGGGAT
122 A--ATC-AGG-GATACTCCAA-CC---C-------C------GTT-ATTTC-C--GA--GGGGAT
* * *
6824984 ACTCCAACCCCGGTTTTATTTCTAAAATACCATTTCTCCACAATC
160 ACTCCAACCCCAGTTTTATTTCTAAAACACCAATTCTCCACAATC
* * *
6825029 GGGAATACTCCAACCTCGGTTTTATTTCCAAAACATCAATTTTTCATCGGAGATACTCCAACCCC
1 GGGGATACTCCAACCCCGGTTTTATTTCCAAAACATCAATTTTTCATCGGGGATACTCCAACCCC
* * ** * *
6825094 GTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTTCTAAAATATTAATTTCTCATAATCGGG
66 GTTATTTTCGAGGGGATACTCCAA-CCCGACTTTATTTCTAAAACACCAATTTC-CACAATCAGG
* *
6825159 GATACTCCAACCCCGTTATTTTCGA-GGGAGTACTCCAACCCCAGTTTTATTTCTAAAACACTAA
129 GATACTCCAACCCCGTTATTTCCGAGGGGA-TACTCCAACCCCAGTTTTATTTCTAAAACACCAA
6825223 TTCTCCACAATC
193 TTCTCCACAATC
** * * *
6825235 AAGGATACTCCAACTCCGATTTTATTTCCAAAATCATCGATTTTTCACAATCGGGGATACTCCAA
1 GGGGATACTCCAACCCCGGTTTTATTTCCAAAA-CATCAATTTTT--C-ATCGGGGATACTCCAA
*
6825300 CCCCGTTATTTTCGAGGGGACACTCCAACCC
62 CCCCGTTATTTTCGAGGGGATACTCCAACCC
6825331 CGTTATTATC
Statistics
Matches: 586, Mismatches: 87, Indels: 120
0.74 0.11 0.15
Matches are distributed among these distances:
195 4 0.01
196 2 0.00
197 2 0.00
198 2 0.00
199 2 0.00
200 3 0.01
201 2 0.00
202 2 0.00
203 12 0.02
204 7 0.01
205 185 0.32
206 89 0.15
207 16 0.03
208 8 0.01
209 37 0.06
210 43 0.07
211 4 0.01
212 2 0.00
214 1 0.00
218 1 0.00
220 2 0.00
221 4 0.01
222 1 0.00
224 6 0.01
225 5 0.01
226 106 0.18
227 1 0.00
228 5 0.01
229 12 0.02
230 2 0.00
231 2 0.00
232 3 0.01
233 3 0.01
234 1 0.00
235 2 0.00
236 3 0.01
237 4 0.01
ACGTcount: A:0.29, C:0.27, G:0.12, T:0.32
Consensus pattern (204 bp):
GGGGATACTCCAACCCCGGTTTTATTTCCAAAACATCAATTTTTCATCGGGGATACTCCAACCCC
GTTATTTTCGAGGGGATACTCCAACCCGACTTTATTTCTAAAACACCAATTTCCACAATCAGGGA
TACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCAGTTTTATTTCTAAAACACCAATTC
TCCACAATC
Found at i:6824868 original size:48 final size:48
Alignment explanation
Indices: 6824754--6824916 Score: 193
Period size: 48 Copynumber: 3.3 Consensus size: 48
6824744 ATTTTCGAGA
* * * **
6824754 GGATACTCCAACCTCGGTTTT-CTTTCTAAAACACCAATTCTCCACAATCGG
1 GGATACTCCAACCCCGGTTTTATTTTC-AAAACATCAATT-T-TTC-ATCGG
*
6824805 AGATACTCCAACCCCGGTTTTATTTTCAAAACATCAATTTTTCATCGG
1 GGATACTCCAACCCCGGTTTTATTTTCAAAACATCAATTTTTCATCGG
* * **
6824853 GGATACTCCAACCCCGGTTTTATTTCCAAAACATAAATTTTTCATCAA
1 GGATACTCCAACCCCGGTTTTATTTTCAAAACATCAATTTTTCATCGG
6824901 GGATACTCCAACCCCG
1 GGATACTCCAACCCCG
6824917 TCATTTTCGA
Statistics
Matches: 100, Mismatches: 11, Indels: 5
0.86 0.09 0.04
Matches are distributed among these distances:
48 64 0.64
49 1 0.01
50 1 0.01
51 30 0.30
52 4 0.04
ACGTcount: A:0.29, C:0.29, G:0.11, T:0.31
Consensus pattern (48 bp):
GGATACTCCAACCCCGGTTTTATTTTCAAAACATCAATTTTTCATCGG
Found at i:6825006 original size:51 final size:51
Alignment explanation
Indices: 6824930--6825094 Score: 185
Period size: 51 Copynumber: 3.3 Consensus size: 51
6824920 TTTTCGAGGA
* ** *
6824930 GATACTCCAACCCTGACTTTATTTCTAAAATATTAATTTCTCATAATCGGG
1 GATACTCCAACCCCGGTTTTATTTCTAAAATATCAATTTCTCATAATCGGG
* *
6824981 GATACTCCAACCCCGGTTTTATTTCTAAAATA-CCATTTCTCCACAATCGGG
1 GATACTCCAACCCCGGTTTTATTTCTAAAATATCAATTTCT-CATAATCGGG
* * * * * *
6825032 AATACTCCAACCTCGGTTTTATTTCCAAAACATCAATTT-T--TCATCGGA
1 GATACTCCAACCCCGGTTTTATTTCTAAAATATCAATTTCTCATAATCGGG
6825080 GATACTCCAACCCCG
1 GATACTCCAACCCCG
6825095 TTATTTTCGA
Statistics
Matches: 96, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
48 18 0.19
50 6 0.06
51 67 0.70
52 5 0.05
ACGTcount: A:0.30, C:0.27, G:0.10, T:0.33
Consensus pattern (51 bp):
GATACTCCAACCCCGGTTTTATTTCTAAAATATCAATTTCTCATAATCGGG
Found at i:6825092 original size:178 final size:175
Alignment explanation
Indices: 6824721--6825173 Score: 612
Period size: 178 Copynumber: 2.6 Consensus size: 175
6824711 ATTTAACATA
* * *
6824721 ATCGGGGATACTCCAACCCCGTTATTTTCGA-GAGGATACTCCAA-CCTCGGTTTTCTTTCTAAA
1 ATCGGAGATACTCCAACCCCGTTATTTTCGAGGA-GATACTCCAACCCT-GGCTTTATTTCTAAA
* ** * * *
6824784 ACACCAA-TTCTCCACAATCGGAGATACTCCAACCCCGGTTTTATTTTCAAAACATCAATTTTTC
64 ATATTAATTTCT-CATAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACATCAATTTTAC
*
6824848 ATCGGGGATACTCCAACCCCGGTTTTATTTCCAAAACATAAATTTTTC
128 ATCGGGAATACTCCAACCCCGGTTTTATTTCCAAAACATAAATTTTTC
* * *
6824896 ATC-AAGGATACTCCAACCCCGTCATTTTCGAGGAGATACTCCAACCCTGACTTTATTTCTAAAA
1 ATCGGA-GATACTCCAACCCCGTTATTTTCGAGGAGATACTCCAACCCTGGCTTTATTTCTAAAA
* *
6824960 TATTAATTTCTCATAATCGGGGATACTCCAACCCCGGTTTTA-TTTCTAAA-ATACCATTTCTCC
65 TATTAATTTCTCATAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACAT-CAATTT-T--
* *
6825023 ACAATCGGGAATACTCCAACCTCGGTTTTATTTCCAAAACATCAATTTTTC
126 AC-ATCGGGAATACTCCAACCCCGGTTTTATTTCCAAAACATAAATTTTTC
* *
6825074 ATCGGAGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTTCTAAAAT
1 ATCGGAGATACTCCAACCCCGTTATTTTCGAGGAGATACTCCAACCCTGGCTTTATTTCTAAAAT
6825139 ATTAATTTCTCATAATCGGGGATACTCCAACCCCG
66 ATTAATTTCTCATAATCGGGGATACTCCAACCCCG
6825174 TTATTTTCGA
Statistics
Matches: 246, Mismatches: 22, Indels: 17
0.86 0.08 0.06
Matches are distributed among these distances:
173 2 0.01
174 12 0.05
175 83 0.34
176 9 0.04
177 1 0.00
178 138 0.56
179 1 0.00
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.32
Consensus pattern (175 bp):
ATCGGAGATACTCCAACCCCGTTATTTTCGAGGAGATACTCCAACCCTGGCTTTATTTCTAAAAT
ATTAATTTCTCATAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACATCAATTTTACATC
GGGAATACTCCAACCCCGGTTTTATTTCCAAAACATAAATTTTTC
Found at i:6825177 original size:79 final size:78
Alignment explanation
Indices: 6825033--6825248 Score: 269
Period size: 79 Copynumber: 2.8 Consensus size: 78
6825023 ACAATCGGGA
* * * * *
6825033 ATACTCCAACCTCGGTTTTATTTCCAAAACATCAATTT-T--TCATCGGAGATACTCCAACCCCG
1 ATACTCCAACCCCGGTTTTATTTCTAAAACATTAATTTCTCATAATCGGGGATACTCCAACCCCG
6825095 TTATTTTCGAGGGG
66 TTATTTTCGA-GGG
* *
6825109 ATACTCCAACCCCGGCTTTATTTCTAAAATATTAATTTCTCATAATCGGGGATACTCCAACCCCG
1 ATACTCCAACCCCGGTTTTATTTCTAAAACATTAATTTCTCATAATCGGGGATACTCCAACCCCG
6825174 TTATTTTCGAGGG
66 TTATTTTCGAGGG
* * * **
6825187 AGTACTCCAACCCCAGTTTTATTTCTAAAACACTAA-TTCTCCACAATCAAGGATACTCCAAC
1 A-TACTCCAACCCCGGTTTTATTTCTAAAACATTAATTTCT-CATAATCGGGGATACTCCAAC
6825249 TCCGATTTTA
Statistics
Matches: 121, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
76 33 0.27
77 1 0.01
78 8 0.07
79 79 0.65
ACGTcount: A:0.29, C:0.27, G:0.12, T:0.31
Consensus pattern (78 bp):
ATACTCCAACCCCGGTTTTATTTCTAAAACATTAATTTCTCATAATCGGGGATACTCCAACCCCG
TTATTTTCGAGGG
Found at i:6838891 original size:61 final size:61
Alignment explanation
Indices: 6838739--6838881 Score: 225
Period size: 61 Copynumber: 2.3 Consensus size: 61
6838729 TTCACTTTTT
**
6838739 AGTCCTCAAAGAGTAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTT
1 AGTCCTCAAAGAGTAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCG
* *
6838800 AGTCCTTAAAGAATAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCG
1 AGTCCTCAAAGAGTAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-CG
*
6838861 AGTCCTCAAAGAGCAGGACGC
1 AGTCCTCAAAGAGTAGGACGC
6838882 TCTCTCCTTT
Statistics
Matches: 74, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
60 3 0.04
61 71 0.96
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (61 bp):
AGTCCTCAAAGAGTAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCG
Found at i:6838915 original size:39 final size:39
Alignment explanation
Indices: 6838861--6838960 Score: 164
Period size: 39 Copynumber: 2.6 Consensus size: 39
6838851 GGCACTTCCG
6838861 AGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCCTTT
* *
6838900 AGTCCTCCAAGAGCAGGACGCTCTCTCTTTTCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCCTTT
* *
6838939 ATTCCTCAAAGAGCAAGACGCT
1 AGTCCTCAAAGAGCAGGACGCT
6838961 TTTCAAAGCC
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 56 1.00
ACGTcount: A:0.23, C:0.34, G:0.16, T:0.27
Consensus pattern (39 bp):
AGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCCTTT
Found at i:6839024 original size:55 final size:56
Alignment explanation
Indices: 6838941--6839129 Score: 168
Period size: 55 Copynumber: 3.3 Consensus size: 56
6838931 CACCCTTTAT
* * **
6838941 TCCTCAAAGAGCAAGACG-CTTTTCAAAGCCTACACGAGTTGGTGGCACCT-TTCAG
1 TCCTCAAAGAGCAGGACGCCTTTTCAAAGCCCACAAAAGTTGGTGGCACCTCTT-AG
* **
6838996 TCCTCAAAGCGCAGGACGCCTTTT-AAAGCCCACAAAAGTTGGTGGCATGTCTTAG
1 TCCTCAAAGAGCAGGACGCCTTTTCAAAGCCCACAAAAGTTGGTGGCACCTCTTAG
* * * * **
6839051 TCCTCAAAGAGCAGGACACCTTTTTCCTTTTAAATCCCACACAAGTTGGTGGCACTTCCCAG
1 TCCTCAAAGAGCAGGACGCC-TTTT-C----AAAGCCCACAAAAGTTGGTGGCACCTCTTAG
*
6839113 TCCTCAAAGACCAGGAC
1 TCCTCAAAGAGCAGGAC
6839130 ACTCTTTCCT
Statistics
Matches: 109, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
55 57 0.52
56 11 0.10
62 41 0.38
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.24
Consensus pattern (56 bp):
TCCTCAAAGAGCAGGACGCCTTTTCAAAGCCCACAAAAGTTGGTGGCACCTCTTAG
Found at i:6839115 original size:62 final size:63
Alignment explanation
Indices: 6839014--6839136 Score: 178
Period size: 62 Copynumber: 2.0 Consensus size: 63
6839004 GCGCAGGACG
** *
6839014 CCTTTTAAAGCCCACAAAAGTTGGTGGCATGTCTTAGTCCTCAAAGAGCAGGACAC-CTTTTT
1 CCTTTTAAAGCCCACAAAAGTTGGTGGCATGTCCCAGTCCTCAAAGACCAGGACACTCTTTTT
* *
6839076 CCTTTTAAATCCCACACAAGTTGGTGGCACT-TCCCAGTCCTCAAAGACCAGGACACTCTTT
1 CCTTTTAAAGCCCACAAAAGTTGGTGGCA-TGTCCCAGTCCTCAAAGACCAGGACACTCTTT
6839137 CCTATCACCC
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
62 49 0.91
63 5 0.09
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (63 bp):
CCTTTTAAAGCCCACAAAAGTTGGTGGCATGTCCCAGTCCTCAAAGACCAGGACACTCTTTTT
Found at i:6839210 original size:55 final size:55
Alignment explanation
Indices: 6839145--6839265 Score: 192
Period size: 55 Copynumber: 2.2 Consensus size: 55
6839135 TTCCTATCAC
*
6839145 CCTTT-AGTCCTCAAAGAGCAGGACGA-CTTTCAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGAC-ACCTTTCAAAGCCCACACAAATTGGTGGCA
*
6839199 CCTTTCAGTCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAAATTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAATTGGTGGCA
*
6839254 CCTTTCAATCCT
1 CCTTTCAGTCCT
6839266 ATGCTTTTTA
Statistics
Matches: 62, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
54 6 0.10
55 56 0.90
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (55 bp):
CCTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAATTGGTGGCA
Found at i:6839339 original size:255 final size:255
Alignment explanation
Indices: 6839016--6839514 Score: 818
Period size: 255 Copynumber: 2.0 Consensus size: 255
6839006 GCAGGACGCC
**
6839016 TTTTAAAGCCCACAAAAGTTGGTGGCATGTCTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTT
1 TTTTAAAGCCCACAAAAGTTGGTGGCACCTCTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTT
* *
6839081 TAAATCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGACCAGGACACTCTTTCCTATCACC
66 TAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGACCAGGACACTCTCTCCTATCACC
6839146 CTTTAGTCCTCAAAGAGCAGGACGACTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCT
131 CTTTAGTCCTCAAAGAGCAGGACGACTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCT
*
6839211 CAAAGAGCAGGACACCTTTTAAAGCCCACACAAATTGGTGGCACCTTTCAATCCTATGCT
196 CAAAGAGCAGGACACCTTTCAAAGCCCACACAAATTGGTGGCACCTTTCAATCCTATGCT
* * *
6839271 TTTTAAAGCCCACACAAGTTGGTGGCACCTCTTAGTCCTTAAAGAGCAGGACACCTTTTTCTTTT
1 TTTTAAAGCCCACAAAAGTTGGTGGCACCTCTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTT
* * * ** * * *
6839336 TAAAGCCCACACAAGTTGGTGGCACTTTCGATTCCTTGAAGAGCAGGACGCTCTCTCCTTTCACC
66 TAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGACCAGGACACTCTCTCCTATCACC
*
6839401 CTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCT
131 CTTTAGTCCTCAAAGAGCAGGACGACTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCT
* * *
6839466 CAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTC
196 CAAAGAGCAGGACACCTTTCAAAGCCCACACAAATTGGTGGCACCTTTC
6839515 TAGTCCTCAA
Statistics
Matches: 224, Mismatches: 20, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
255 224 1.00
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.26
Consensus pattern (255 bp):
TTTTAAAGCCCACAAAAGTTGGTGGCACCTCTTAGTCCTCAAAGAGCAGGACACCTTTTTCCTTT
TAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGACCAGGACACTCTCTCCTATCACC
CTTTAGTCCTCAAAGAGCAGGACGACTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCT
CAAAGAGCAGGACACCTTTCAAAGCCCACACAAATTGGTGGCACCTTTCAATCCTATGCT
Found at i:6839483 original size:55 final size:55
Alignment explanation
Indices: 6839400--6839530 Score: 237
Period size: 55 Copynumber: 2.4 Consensus size: 55
6839390 CTCCTTTCAC
6839400 CCTTT-AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
6839454 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
*
6839509 CTTTTCTAGTCCTCAAAGAGCA
1 CCTTTC-AGTCCTCAAAGAGCA
6839531 AGACATTTCT
Statistics
Matches: 74, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
54 5 0.07
55 54 0.73
56 15 0.20
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (55 bp):
CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:6839486 original size:26 final size:26
Alignment explanation
Indices: 6839400--6839486 Score: 70
Period size: 26 Copynumber: 3.3 Consensus size: 26
6839390 CTCCTTTCAC
6839400 CCTTT-AGTCCTCAAAGAGCAGGACG
1 CCTTTCAGTCCTCAAAGAGCAGGACG
* * * ** *
6839425 CCTTTCAAAGCCCACACAAGTTGGTGG-CA
1 CCTTTC--AGTCCTCA-AAG-AGCAGGACG
6839454 CCTTTCAGTCCTCAAAGAGCAGGACG
1 CCTTTCAGTCCTCAAAGAGCAGGACG
6839480 CCTTTCA
1 CCTTTCA
6839487 AAGCCCACAC
Statistics
Matches: 44, Mismatches: 12, Indels: 11
0.66 0.18 0.16
Matches are distributed among these distances:
25 8 0.18
26 11 0.25
27 6 0.14
28 6 0.14
29 10 0.23
30 3 0.07
ACGTcount: A:0.26, C:0.31, G:0.21, T:0.22
Consensus pattern (26 bp):
CCTTTCAGTCCTCAAAGAGCAGGACG
Found at i:6839605 original size:61 final size:62
Alignment explanation
Indices: 6839536--6840080 Score: 707
Period size: 61 Copynumber: 8.9 Consensus size: 62
6839526 GAGCAAGACA
* * * *
6839536 TTTCTAGTCCTCAAAGAGTAGGATGTCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA-T
1 TTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACC
*
6839597 TTTCTAGTCCTCAAAGAGCAGGACGCCTTCTCC-TTCAAAGCCCACACAAGTTGGTGGCACC
1 TTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACC
* * * *
6839658 CTT-TAGTCCTCAAAGAGTAGGACGCCTTTTCCTTTTTAAAGCCCACACAAATTGGTGGCACC
1 TTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCC-TTTCAAAGCCCACACAAGTTGGTGGCACC
* * *
6839720 CTT-TAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA-T
1 TTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACC
* * * *
6839780 TTTCCAGTCCTCAAAGAGCATGACGCCTTTTCCTTTTAAAGCCCATACAAGTTGGTGGCACC
1 TTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACC
** * * *
6839842 CAT-TAGTCCTCAAAGAGCAGGACGCCTTCTCCTTT-AAAGCCCACACAAGTTAGTGGCACT
1 TTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACC
* *
6839902 TTTCTAGTCCTCAAAGAGCAGAACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA-T
1 TTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACC
* *
6839963 TTTCTAGTCCTCAAAGAGCAGGATG-C-TTTCTCTTTGCAAAGCCCACACAAGTTGATGGCACC
1 TTTCTAGTCCTCAAAGAGCAGGACGCCTTTTC-CTTT-CAAAGCCCACACAAGTTGGTGGCACC
* * * * * *
6840025 -TTCCAGTCCTCAAAGAGTAGGATGCCTCTTCTTTTCAAAGCCCACACGAGTTGGTG
1 TTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTG
6840081 TCCTCAAAGA
Statistics
Matches: 427, Mismatches: 45, Indels: 24
0.86 0.09 0.05
Matches are distributed among these distances:
59 4 0.01
60 83 0.19
61 254 0.59
62 83 0.19
63 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (62 bp):
TTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACC
Found at i:6840206 original size:45 final size:43
Alignment explanation
Indices: 6840079--6840242 Score: 129
Period size: 42 Copynumber: 3.8 Consensus size: 43
6840069 CACGAGTTGG
** * *
6840079 TGTCCTCAAAGAGCCGGACGTACTTTATTTTCTTCTTTC-CTT
1 TGTCCTCAAAGAGCAAGACGCACTTTATTTTCCTCTTTCTCTT
* * *
6840121 TGTCCTCAAAGAGCAAGACACACTTCA-TTCCCTTCTTTTCTCTTT
1 TGTCCTCAAAGAGCAAGACGCACTTTATTTTCC-TC-TTTCTC-TT
* * *
6840166 TGTCCTCAAAGAGCATGATGCACTTTATTTTTCCTCTTTCT-TC
1 TGTCCTCAAAGAGCAAGACGCACTTTA-TTTTCCTCTTTCTCTT
* * * *
6840209 TATCCTCAAAAAGCAGGACACA-TTTCATTTTCCT
1 TGTCCTCAAAGAGCAAGACGCACTTT-ATTTTCCT
6840243 TTTTTCCTTT
Statistics
Matches: 97, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
41 3 0.03
42 34 0.35
43 23 0.24
44 1 0.01
45 30 0.31
46 2 0.02
47 4 0.04
ACGTcount: A:0.22, C:0.27, G:0.11, T:0.40
Consensus pattern (43 bp):
TGTCCTCAAAGAGCAAGACGCACTTTATTTTCCTCTTTCTCTT
Found at i:6840248 original size:88 final size:86
Alignment explanation
Indices: 6840079--6840271 Score: 214
Period size: 88 Copynumber: 2.2 Consensus size: 86
6840069 CACGAGTTGG
* * * * *
6840079 TGTCCTCAAAGAGCCGGACGTACTTTATTTTCTTCTTTCCTTTGTCCTCAAAGAGCAAGACACAC
1 TGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCCTTTATCCTCAAAAAGCAAGACACAC
6840144 TTCATTCCCTTCTTTTCTCTTT
66 TTCATTCCCTTCTTTTC-CTTT
* * *
6840166 TGTCCTCAAAGAGCATGATGCACTTTATTTTTCCTCTTT-CTTCTATCCTCAAAAAGCAGGACAC
1 TGTCCTCAAAGAGCAGGACGCACTTTA-TTTTCCTCTTTCCTT-TATCCTCAAAAAGCAAGACAC
* *
6840230 ATTTCATTTTCCTT-TTTTCC-TT
64 ACTTCA-TTCCCTTCTTTTCCTTT
*
6840252 TATCCTCGAAA-AGCAGGACG
1 TGTCCTC-AAAGAGCAGGACG
6840272 TACTCTTTTT
Statistics
Matches: 89, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
86 15 0.17
87 30 0.34
88 38 0.43
89 6 0.07
ACGTcount: A:0.22, C:0.27, G:0.12, T:0.39
Consensus pattern (86 bp):
TGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCCTTTATCCTCAAAAAGCAAGACACAC
TTCATTCCCTTCTTTTCCTTT
Found at i:6840320 original size:41 final size:39
Alignment explanation
Indices: 6840275--6840380 Score: 117
Period size: 41 Copynumber: 2.6 Consensus size: 39
6840265 CAGGACGTAC
*
6840275 TCTTTTTCACTTTGTCCTCAAGAAGTAAGACACT-TTCCTTT
1 TCTTTTTC-CTTTGTCCTCAAGAAGTAAGAC-CTATTCC-AT
* * *
6840316 TCTTTTTTCCTTTGTCCTCAAGGAGCAAGACCTATTTCAT
1 TC-TTTTTCCTTTGTCCTCAAGAAGTAAGACCTATTCCAT
6840356 TCTCTTTTCCTTTGTCCTCAA-AAGT
1 TCT-TTTTCCTTTGTCCTCAAGAAGT
6840381 GGGATACCTT
Statistics
Matches: 56, Mismatches: 6, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
39 3 0.05
40 22 0.39
41 25 0.45
42 6 0.11
ACGTcount: A:0.20, C:0.25, G:0.10, T:0.44
Consensus pattern (39 bp):
TCTTTTTCCTTTGTCCTCAAGAAGTAAGACCTATTCCAT
Found at i:6840375 original size:40 final size:41
Alignment explanation
Indices: 6840278--6840376 Score: 121
Period size: 40 Copynumber: 2.4 Consensus size: 41
6840268 GACGTACTCT
* * *
6840278 TTTTCACTTTGTCCTCAAGAAGTAAGACACTTTCCTTTTCTT
1 TTTTC-CTTTGTCCTCAAGAAGCAAGACACTTTCCTATTCTC
* *
6840320 TTTTCCTTTGTCCTCAAGGAGCAAGAC-CTATTTC-ATTCTC
1 TTTTCCTTTGTCCTCAAGAAGCAAGACACT-TTCCTATTCTC
6840360 TTTTCCTTTGTCCTCAA
1 TTTTCCTTTGTCCTCAA
6840377 AAGTGGGATA
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
40 23 0.45
41 23 0.45
42 5 0.10
ACGTcount: A:0.19, C:0.26, G:0.10, T:0.44
Consensus pattern (41 bp):
TTTTCCTTTGTCCTCAAGAAGCAAGACACTTTCCTATTCTC
Found at i:6840935 original size:13 final size:13
Alignment explanation
Indices: 6840919--6840948 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
6840909 ATACATTGTT
6840919 CATTGTATCGATA
1 CATTGTATCGATA
6840932 CATTGTATCGATA
1 CATTGTATCGATA
6840945 CATT
1 CATT
6840949 TTAGGTTTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:6840989 original size:20 final size:19
Alignment explanation
Indices: 6840964--6841037 Score: 94
Period size: 20 Copynumber: 3.7 Consensus size: 19
6840954 TTTACCCAGA
6840964 TGTATCGATACATTTTGCAT
1 TGTATCGATACATTTT-CAT
*
6840984 TGTATCGATACATTGCTCAT
1 TGTATCGATACATT-TTCAT
*
6841004 TGTATCGATACATTTTACAA
1 TGTATCGATACATTTT-CAT
*
6841024 TGCATCGATACATT
1 TGTATCGATACATT
6841038 CAGGCATTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
19 1 0.02
20 46 0.96
21 1 0.02
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.41
Consensus pattern (19 bp):
TGTATCGATACATTTTCAT
Found at i:6842892 original size:51 final size:51
Alignment explanation
Indices: 6842808--6842966 Score: 162
Period size: 51 Copynumber: 3.1 Consensus size: 51
6842798 AAATTTCTAG
* * * * *
6842808 ATTTTTCGT-CTCGGGGATACTTCAATCCC-GATTTCATGTCCAAAACATCA
1 ATTTTTCGTAATCAGGGATACTCCAA-CCCTGATTTTATTTCCAAAACATCA
* * * * *
6842858 ATTTTTCTTAATC-GAGGATACTCCAACTCTGATTTTATTTCTAAAGCATCG
1 ATTTTTCGTAATCAG-GGATACTCCAACCCTGATTTTATTTCCAAAACATCA
** *
6842909 ATTTACCGTAATCAGGGATACTCCAACCCTGGTTTTATTTCCAAAACATCA
1 ATTTTTCGTAATCAGGGATACTCCAACCCTGATTTTATTTCCAAAACATCA
6842960 ATTTTTC
1 ATTTTTC
6842967 ATCCGGATAC
Statistics
Matches: 86, Mismatches: 19, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
50 11 0.13
51 74 0.86
52 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.12, T:0.37
Consensus pattern (51 bp):
ATTTTTCGTAATCAGGGATACTCCAACCCTGATTTTATTTCCAAAACATCA
Found at i:6843083 original size:79 final size:78
Alignment explanation
Indices: 6842971--6843221 Score: 315
Period size: 79 Copynumber: 3.2 Consensus size: 78
6842961 TTTTTCATCC
* * * * **
6842971 GGATACTCCAATCCCGTTATTTTCGAGGGGATACTCCAACCTCGACTTTATTTCTAAAATATTAA
1 GGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACC-CAATTTTATTTCTAAAACAACAA
*
6843036 TT-TCTCACAATCAG
65 TTCTC-CACAATCGG
* * *
6843050 GGATACTCTAACCCCGTTATTTTCGAGGCGATACTCCAACCCCAATTTTATTTCTAAAACACCAA
1 GGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAA-CCCAATTTTATTTCTAAAACAACAA
* *
6843115 TTCTCCATAAACGG
65 TTCTCCACAATCGG
* * * *
6843129 GGATACTCTAACCCCGTTATTTCCGAGGGGATACTCCAACCCCAGTTTTATATCTAAAACAACAA
1 GGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAA-CCCAATTTTATTTCTAAAACAACAA
6843194 TTCTCCACAATCGG
65 TTCTCCACAATCGG
6843208 GGATACTCCAACCC
1 GGATACTCCAACCC
6843222 TGGTTTTATT
Statistics
Matches: 151, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
79 147 0.97
80 4 0.03
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.29
Consensus pattern (78 bp):
GGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCAATTTTATTTCTAAAACAACAAT
TCTCCACAATCGG
Found at i:6843215 original size:51 final size:48
Alignment explanation
Indices: 6843155--6843270 Score: 142
Period size: 51 Copynumber: 2.4 Consensus size: 48
6843145 TTATTTCCGA
*
6843155 GGGGATACTCCAACCCCAGTTTTATATCTAAAACAACAATTCTCCACAATC
1 GGGGATACTCCAACCCCAGTTTTATATCCAAAACAACAATT-T-CAC-ATC
** * * **
6843206 GGGGATACTCCAACCCTGGTTTTATTTCCAAAACATCAATTTTTCATC
1 GGGGATACTCCAACCCCAGTTTTATATCCAAAACAACAATTTCACATC
6843254 GGGGATACTCCAACCCC
1 GGGGATACTCCAACCCC
6843271 GTTATTTCCG
Statistics
Matches: 57, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
48 19 0.33
49 1 0.02
50 1 0.02
51 36 0.63
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.28
Consensus pattern (48 bp):
GGGGATACTCCAACCCCAGTTTTATATCCAAAACAACAATTTCACATC
Found at i:6843312 original size:127 final size:126
Alignment explanation
Indices: 6843079--6843475 Score: 528
Period size: 127 Copynumber: 3.1 Consensus size: 126
6843069 TTTTCGAGGC
** * * * * *
6843079 GATACTCCAACCCCAATTTTATTTCTAAAACACCAATTCTCCATAAACGGGGATACTCTAACCCC
1 GATACTCCAA-CCCGGTTTTATTTCCAAAACATCAATTTTTCAT---CGGGGATACTCCAACCCC
*
6843144 GTTATTTCCGAGGGGATACTCCAACCCC-AGTTTTATATCTAAAACAACAATTCTCCACAATCGG
62 GTTATTTCCGAGGGGATACTCCAACCCCGA-TTTTATTTCTAAAACAACAATTCTCCACAATCGG
6843208 G
126 G
6843209 GATACTCCAACCCTGGTTTTATTTCCAAAACATCAATTTTTCATCGGGGATACTCCAACCCCGTT
1 GATACTCCAACCC-GGTTTTATTTCCAAAACATCAATTTTTCATCGGGGATACTCCAACCCCGTT
* *
6843274 ATTTCCGAGGAGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTCTCCACAATCGGG
65 ATTTCCGAGGGGATACTCCAACCCCGATTTTATTTCTAAAACAACAATTCTCCACAATCGGG
*
6843336 GATACTCCAATCCCGGTTTTATTTCCAAAACATCAATTTTTCATCGGGGATACTCCAACCCAGTT
1 GATACTCCAA-CCCGGTTTTATTTCCAAAACATCAATTTTTCATCGGGGATACTCCAACCCCGTT
* * * * * * ** *
6843401 ATTTTCAAGGGGAGACTCCAACCCTGACTTTATTTCTAAAATATTAATT-TCTCATAATCGGG
65 ATTTCCGAGGGGATACTCCAACCCCGATTTTATTTCTAAAACAACAATTCTC-CACAATCGGG
6843463 GATACTCCAACCC
1 GATACTCCAACCC
6843476 CGTTATTTTC
Statistics
Matches: 242, Mismatches: 21, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
126 5 0.02
127 196 0.81
128 4 0.02
129 3 0.01
130 34 0.14
ACGTcount: A:0.30, C:0.28, G:0.12, T:0.30
Consensus pattern (126 bp):
GATACTCCAACCCGGTTTTATTTCCAAAACATCAATTTTTCATCGGGGATACTCCAACCCCGTTA
TTTCCGAGGGGATACTCCAACCCCGATTTTATTTCTAAAACAACAATTCTCCACAATCGGG
Found at i:6843345 original size:51 final size:48
Alignment explanation
Indices: 6843285--6843396 Score: 143
Period size: 51 Copynumber: 2.3 Consensus size: 48
6843275 TTTCCGAGGA
*
6843285 GATACTCCAACCCCGATTTTATTTCTAAAACACCAATTCTCCACAATCGGG
1 GATACTCCAACCCCGATTTTATTTCCAAAACACCAATT-T-CAC-ATCGGG
* * * **
6843336 GATACTCCAATCCCGGTTTTATTTCCAAAACATCAATTTTTCATCGGG
1 GATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTCACATCGGG
6843384 GATACTCCAACCC
1 GATACTCCAACCC
6843397 AGTTATTTTC
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
48 18 0.33
49 1 0.02
50 1 0.02
51 34 0.63
ACGTcount: A:0.29, C:0.30, G:0.11, T:0.29
Consensus pattern (48 bp):
GATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTCACATCGGG
Found at i:6843435 original size:333 final size:332
Alignment explanation
Indices: 6842997--6843682 Score: 980
Period size: 333 Copynumber: 2.1 Consensus size: 332
6842987 TTATTTTCGA
** * * * * * *
6842997 GGGGATACTCCAACCTCGACTTTATTTCTAAAATATTAATTTCTCACAATCAGGGATACTCTAAC
1 GGGGATACTCCAACC-CGGTTTTATTTCCAAAACATCAATTT-T-TC-ATCGGGGATACTCCAAC
* * * *
6843062 CCCGTTATTTTCGAGGCGATACTCCAACCCCAATTTTATTTCTAAAACACCAA-TTCTCCATAAA
62 CCAGTTATTTTCAAGGCGAGACTCCAACCCCAACTTTATTTCTAAAACACCAATTTCT-CATAAA
* *
6843126 CGGGGATACTCTAACCCCGTTATTTCCGAGGGGATACTCCAACCCCAGTTTTATATCTAAAACAA
126 CGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCAGTTTTATATCAAAAACAA
*
6843191 CAATTCTCCACAATCGGGGATACTCCAACCCTGGTTTTATTTCCAAAACATCAATTTTTCATCGG
191 CAATTCTCCACAATCGGGGATACTCCAACCCTGGTTTTATTTCCAAAACATCAATTTTTAATCGG
*
6843256 GGATACTCCAACCCCGTTATTTCCGAGGAGATACTCCAACCCCGATTTTATTTCTAAAACACCAA
256 GGATACTCCAACCCCGTTATTTCCGAGGAGATACTCCAACCCCGAGTTTATTTCTAAAACACCAA
6843321 -TTCTCCACAATC
321 TTTCT-CACAATC
6843333 GGGGATACTCCAATCCCGGTTTTATTTCCAAAACATCAATTTTTCATCGGGGATACTCCAACCCA
1 GGGGATACTCCAA-CCCGGTTTTATTTCCAAAACATCAATTTTTCATCGGGGATACTCCAACCCA
* ** * ** *
6843398 GTTATTTTCAAGGGGAGACTCCAACCCTGACTTTATTTCTAAAATATTAATTTCTCATAATCGGG
65 GTTATTTTCAAGGCGAGACTCCAACCCCAACTTTATTTCTAAAACACCAATTTCTCATAAACGGG
* * * * *
6843463 GATACTCCAACCCCGTTATTTTCGAGGGGATACTCTAACCCCGGTTTTATTTCAAAAACACCAAT
130 GATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCAGTTTTATATCAAAAACAACAAT
*
6843528 TCTCCACAATTGGGGATACTCCAACCCTGGTTTTATTTCCAAAACATCAATTTTTAATCGGGGAT
195 TCTCCACAATCGGGGATACTCCAACCCTGGTTTTATTTCCAAAACATCAATTTTTAATCGGGGAT
* * * **
6843593 ACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGAGTTTATTTCTAAAATATTAATTTC
260 ACTCCAACCCCGTTATTTCCGAGGAGATACTCCAACCCCGAGTTTATTTCTAAAACACCAATTTC
*
6843658 TCATAATC
325 TCACAATC
6843666 GGGGATACTCCAACCCG
1 GGGGATACTCCAACCCG
6843683 TTATTTTCGA
Statistics
Matches: 312, Mismatches: 35, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
332 4 0.01
333 262 0.84
334 9 0.03
335 1 0.00
336 34 0.11
337 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (332 bp):
GGGGATACTCCAACCCGGTTTTATTTCCAAAACATCAATTTTTCATCGGGGATACTCCAACCCAG
TTATTTTCAAGGCGAGACTCCAACCCCAACTTTATTTCTAAAACACCAATTTCTCATAAACGGGG
ATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCAGTTTTATATCAAAAACAACAATT
CTCCACAATCGGGGATACTCCAACCCTGGTTTTATTTCCAAAACATCAATTTTTAATCGGGGATA
CTCCAACCCCGTTATTTCCGAGGAGATACTCCAACCCCGAGTTTATTTCTAAAACACCAATTTCT
CACAATC
Found at i:6843463 original size:206 final size:204
Alignment explanation
Indices: 6842874--6843888 Score: 1198
Period size: 206 Copynumber: 4.9 Consensus size: 204
6842864 CTTAATCGAG
* * * * * ** *
6842874 GATACTCCAACTCTGATTTTATTTCTAAAGCATCGATT-TACCGTAATCAGGGATACTCCAACCC
1 GATACTCCAACCCCGATTTTATTTCTAAAACACCAATTCT-CCACAATCGGGGATACTCCAACCC
*
6842938 TGGTTTTATTTCCAAAACATCAATTTTTCATC-CGGATACTCCAATCCCGTTATTTTCGAGGGGA
65 -GGTTTTATTTCCAAAACATCAATTTTTCATCGGGGATACTCCAA-CCCGTTATTTTCGAGGGGA
* * *
6843002 TACTCCAA-CCTCGACTTTATTTCTAAAATATTAATTTCTCACAATCAGGGATACTCTAACCCCG
128 TACTCCAACCCT-GACTTTATTTCTAAAATATTAATTTCTCATAATCGGGGATACTCCAACCCCG
6843066 TTATTTTCGAGGC
192 TTATTTTCGAGGC
* * * * *
6843079 GATACTCCAACCCCAATTTTATTTCTAAAACACCAATTCTCCATAAACGGGGATACTCTAACCCC
1 GATACTCCAACCCCGATTTTATTTCTAAAACACCAATTCTCCACAATCGGGGATACTCCAACCCG
* ** * ** ** * *
6843144 G--TTATTTCCGAGGGGATAC-TCCAACCCCAGTTTTAT-ATC--TAAAACAACAATTC-TCCAC
66 GTTTTATTTCC-A----AAACAT-C-A----A-TTTT-TCATCGGGGATACTCCAACCCGT-TAT
** ** * * * *
6843202 AATC--GGGGATACTCCAACCCTGGTTTTATTTCCAAAACATCAATTT-T--TCATCGGGGATAC
117 TTTCGAGGGGATACTCCAACCCTGACTTTATTTCTAAAATATTAATTTCTCATAATCGGGGATAC
* *
6843262 TCCAACCCCGTTATTTCCGAGGA
182 TCCAACCCCGTTATTTTCGAGGC
6843285 GATACTCCAACCCCGATTTTATTTCTAAAACACCAATTCTCCACAATCGGGGATACTCCAATCCC
1 GATACTCCAACCCCGATTTTATTTCTAAAACACCAATTCTCCACAATCGGGGATACTCCAA-CCC
* *
6843350 GGTTTTATTTCCAAAACATCAATTTTTCATCGGGGATACTCCAACCCAGTTATTTTCAAGGGGAG
65 GGTTTTATTTCCAAAACATCAATTTTTCATCGGGGATACTCCAACCC-GTTATTTTCGAGGGGAT
6843415 ACTCCAACCCTGACTTTATTTCTAAAATATTAATTTCTCATAATCGGGGATACTCCAACCCCGTT
129 ACTCCAACCCTGACTTTATTTCTAAAATATTAATTTCTCATAATCGGGGATACTCCAACCCCGTT
*
6843480 ATTTTCGAGGG
194 ATTTTCGAGGC
* * * *
6843491 GATACTCTAACCCCGGTTTTATTTCAAAAACACCAATTCTCCACAATTGGGGATACTCCAACCCT
1 GATACTCCAACCCCGATTTTATTTCTAAAACACCAATTCTCCACAATCGGGGATACTCCAACCC-
*
6843556 GGTTTTATTTCCAAAACATCAATTTTTAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGAT
65 GGTTTTATTTCCAAAACATCAATTTTTCATCGGGGATACTCCAA-CCCGTTATTTTCGAGGGGAT
* *
6843621 ACTCCAACCCCGAGTTTATTTCTAAAATATTAATTTCTCATAATCGGGGATACTCCAA-CCCGTT
129 ACTCCAACCCTGACTTTATTTCTAAAATATTAATTTCTCATAATCGGGGATACTCCAACCCCGTT
6843685 ATTTTCGAGGC
194 ATTTTCGAGGC
* * *
6843696 GATACTCCAACCCTGGTTTTATTTCTAAAACACCAATTCTCCACATTCGGGGATACTCCAACCCC
1 GATACTCCAACCCCGATTTTATTTCTAAAACACCAATTCTCCACAATCGGGGATACTCCAA-CCC
* * **
6843761 GATTTTATTTCTAAAACATCAATTTTTCATCGGGGATACTCCAATCCCGTTATTTTCGATAGGAT
65 GGTTTTATTTCCAAAACATCAATTTTTCATCGGGGATACTCCAA-CCCGTTATTTTCGAGGGGAT
* *
6843826 ACTCCAACCCCGACTTTATTTCTAAAATATTAATTTCTCATAATCGAGGATACTCCAACCCCG
129 ACTCCAACCCTGACTTTATTTCTAAAATATTAATTTCTCATAATCGGGGATACTCCAACCCCG
6843889 GTTTTATTTG
Statistics
Matches: 693, Mismatches: 83, Indels: 67
0.82 0.10 0.08
Matches are distributed among these distances:
197 1 0.00
198 7 0.01
199 1 0.00
200 7 0.01
201 3 0.00
202 9 0.01
203 38 0.05
204 6 0.01
205 243 0.35
206 300 0.43
207 11 0.02
208 3 0.00
209 41 0.06
210 4 0.01
211 4 0.01
212 7 0.01
213 7 0.01
214 1 0.00
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.32
Consensus pattern (204 bp):
GATACTCCAACCCCGATTTTATTTCTAAAACACCAATTCTCCACAATCGGGGATACTCCAACCCG
GTTTTATTTCCAAAACATCAATTTTTCATCGGGGATACTCCAACCCGTTATTTTCGAGGGGATAC
TCCAACCCTGACTTTATTTCTAAAATATTAATTTCTCATAATCGGGGATACTCCAACCCCGTTAT
TTTCGAGGC
Found at i:6843482 original size:79 final size:79
Alignment explanation
Indices: 6843378--6843554 Score: 221
Period size: 79 Copynumber: 2.2 Consensus size: 79
6843368 TCAATTTTTC
* * *
6843378 ATCGGGGATACTCCAACCCAGTTATTTTCAAGGGGAGACTCCAACCCTGACTTTATTTCTAAAAT
1 ATCGGGGATACTCCAACCCAGTTATTTTCAAGGGGAGACTCCAACCCCGACTTTATTTCAAAAAC
** *
6843443 ATTAATT-TCTCATA
66 ACCAATTCTC-CACA
* * * * **
6843457 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCTAACCCCGGTTTTATTTCAAAAAC
1 ATCGGGGATACTCCAACCCAGTTATTTTCAAGGGGAGACTCCAACCCCGACTTTATTTCAAAAAC
6843522 ACCAATTCTCCACA
66 ACCAATTCTCCACA
*
6843536 ATTGGGGATACTCCAACCC
1 ATCGGGGATACTCCAACCC
6843555 TGGTTTTATT
Statistics
Matches: 84, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
79 82 0.98
80 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (79 bp):
ATCGGGGATACTCCAACCCAGTTATTTTCAAGGGGAGACTCCAACCCCGACTTTATTTCAAAAAC
ACCAATTCTCCACA
Found at i:6843594 original size:127 final size:129
Alignment explanation
Indices: 6843409--6843681 Score: 374
Period size: 127 Copynumber: 2.1 Consensus size: 129
6843399 TTATTTTCAA
* * * *
6843409 GGGGAGACTCCAACCCTGACTTTATTTCTAAAATATTAATTTCTCATAATCGGGGATACTCCAAC
1 GGGGATACTCCAACCCTGACTTTATTTCCAAAACATCAATTTCT-ATAATCGGGGATACTCCAAC
*
6843474 CCCGTTATTTTCGAGGGGATACTCTAACCCCG-GTTTTATTTCAAAAACACCAA-TTCTCCACAA
65 CCCGTTATTTTCGAGGGGATACTCCAACCCCGAG-TTTATTTCAAAAACACCAATTTCT-CACAA
*
6843537 TT
128 TC
**
6843539 GGGGATACTCCAACCCTGGTTTTATTTCCAAAACATCAATTT-T-TAATCGGGGATACTCCAACC
1 GGGGATACTCCAACCCTGACTTTATTTCCAAAACATCAATTTCTATAATCGGGGATACTCCAACC
* * ** *
6843602 CCGTTATTTTCGAGGGGATACTCCAACCCCGAGTTTATTTCTAAAATATTAATTTCTCATAATC
66 CCGTTATTTTCGAGGGGATACTCCAACCCCGAGTTTATTTCAAAAACACCAATTTCTCACAATC
6843666 GGGGATACTCCAACCC
1 GGGGATACTCCAACCC
6843682 GTTATTTTCG
Statistics
Matches: 128, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
127 86 0.67
128 5 0.04
129 1 0.01
130 36 0.28
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.32
Consensus pattern (129 bp):
GGGGATACTCCAACCCTGACTTTATTTCCAAAACATCAATTTCTATAATCGGGGATACTCCAACC
CCGTTATTTTCGAGGGGATACTCCAACCCCGAGTTTATTTCAAAAACACCAATTTCTCACAATC
Found at i:6843706 original size:78 final size:78
Alignment explanation
Indices: 6843542--6843759 Score: 302
Period size: 78 Copynumber: 2.8 Consensus size: 78
6843532 CACAATTGGG
*
6843542 GATACTCCAACCCTGGTTTTATTTCCAAAACATCAATTT-T--TAATCGGGGATACTCCAACCCC
1 GATACTCCAACCCTGGTTTTATTTCTAAAACATCAATTTCTCATAATCGGGGATACTCCAA-CCC
*
6843604 GTTATTTTCGAGGG
65 GTTATTTTCGAGGC
* * *
6843618 GATACTCCAACCCCGAG-TTTATTTCTAAAATATTAATTTCTCATAATCGGGGATACTCCAACCC
1 GATACTCCAACCCTG-GTTTTATTTCTAAAACATCAATTTCTCATAATCGGGGATACTCCAACCC
6843682 GTTATTTTCGAGGC
65 GTTATTTTCGAGGC
* * *
6843696 GATACTCCAACCCTGGTTTTATTTCTAAAACACCAA-TTCTCCACATTCGGGGATACTCCAACCC
1 GATACTCCAACCCTGGTTTTATTTCTAAAACATCAATTTCT-CATAATCGGGGATACTCCAACCC
6843760 CGATTTTATT
Statistics
Matches: 125, Mismatches: 11, Indels: 10
0.86 0.08 0.07
Matches are distributed among these distances:
76 33 0.26
77 7 0.06
78 67 0.54
79 18 0.14
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (78 bp):
GATACTCCAACCCTGGTTTTATTTCTAAAACATCAATTTCTCATAATCGGGGATACTCCAACCCG
TTATTTTCGAGGC
Found at i:6843772 original size:51 final size:48
Alignment explanation
Indices: 6843696--6843809 Score: 147
Period size: 51 Copynumber: 2.3 Consensus size: 48
6843686 TTTTCGAGGC
* *
6843696 GATACTCCAACCCTGGTTTTATTTCTAAAACACCAATTCTCCACATTCGGG
1 GATACTCCAACCCCGATTTTATTTCTAAAACACCAATT-T-CACA-TCGGG
* **
6843747 GATACTCCAACCCCGATTTTATTTCTAAAACATCAATTTTTCATCGGG
1 GATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTCACATCGGG
*
6843795 GATACTCCAATCCCG
1 GATACTCCAACCCCG
6843810 TTATTTTCGA
Statistics
Matches: 57, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
48 19 0.33
49 2 0.04
50 1 0.02
51 35 0.61
ACGTcount: A:0.28, C:0.29, G:0.11, T:0.32
Consensus pattern (48 bp):
GATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTCACATCGGG
Found at i:6843835 original size:411 final size:405
Alignment explanation
Indices: 6842874--6843888 Score: 1246
Period size: 411 Copynumber: 2.5 Consensus size: 405
6842864 CTTAATCGAG
* * * * ** *
6842874 GATACTCCAACTCTGATTTTATTTCTAAAGCATCGATT-TACCGTAATCAGGGATACTCCAACCC
1 GATACTCCAACCCTGATTTTATTTCTAAAACACCAATTCT-CCACAATCGGGGATACTCCAACCC
* *
6842938 TGGTTTTATTTCCAAAACATCAATTTTTCATC-CGGATACTCCAATCCCGTTATTTTCGAGGGGA
65 CGGTTTTATTTCCAAAACATCAATTTTTCATCGGGGATACTCCAATCCCGTTATTTTCGAGGGGA
* * *
6843002 TACTCCAA-CCTCGACTTTATTTCTAAAATATTAATTTCTCACAATCAGGGATACTCTAACCCCG
130 TACTCCAACCCT-GACTTTATTTCTAAAATATTAATTTCTCATAATCGGGGATACTCCAACCCCG
* *
6843066 TTATTTTCGAGGCGATACTCCAACCCCAATTTTATTTCTAAAACACCAATTCTCCATAAACGGGG
194 TTATTTTCGAGGCGATACTCCAACCCCAATTTTATTTCAAAAACACCAATTCTCCACAAACGGGG
* * *
6843131 ATACTCTAACCCCGTTATTTCCGAGGGGATACTCCAACCCCAGTTTTATATCTAAAACAACAATT
259 ATACTCCAACCCCGTTATTTCCGA---GAAACTCCAA---CAGTTTTATATCGAAAACAACAA-T
* * *
6843196 CTCCACAATCGGGGATACTCCAACCCTGGTTTTATTTCCAAAACATCAATTTTTCATCGGGGATA
317 CCCCACAATCGGGGATACTCCAACCCCGGTTTTATTTCCAAAACATCAATTTTTAATCGGGGATA
6843261 CTCCAACCCCGTTATTTCCGAGGA
382 CTCCAACCCCGTTATTTCCGAGGA
* *
6843285 GATACTCCAACCCCGATTTTATTTCTAAAACACCAATTCTCCACAATCGGGGATACTCCAATCCC
1 GATACTCCAACCCTGATTTTATTTCTAAAACACCAATTCTCCACAATCGGGGATACTCCAACCCC
*
6843350 GGTTTTATTTCCAAAACATCAATTTTTCATCGGGGATACTCCAA-CCCAGTTATTTTCAAGGGGA
66 GGTTTTATTTCCAAAACATCAATTTTTCATCGGGGATACTCCAATCCC-GTTATTTTCGAGGGGA
*
6843414 GACTCCAACCCTGACTTTATTTCTAAAATATTAATTTCTCATAATCGGGGATACTCCAACCCCGT
130 TACTCCAACCCTGACTTTATTTCTAAAATATTAATTTCTCATAATCGGGGATACTCCAACCCCGT
* * ** **
6843479 TATTTTCGAGGGGATACTCTAACCCCGGTTTTATTTCAAAAACACCAATTCTCCACAATTGGGGA
195 TATTTTCGAGGCGATACTCCAACCCCAATTTTATTTCAAAAACACCAATTCTCCACAAACGGGGA
* * * * **
6843544 TACTCCAACCCTGGTTTTATTTCC-A-AAACAT-C-A-ATTTTTA-ATCGGGGATACTCCAA-CC
260 TACTCCAACCC-CG--TTATTTCCGAGAAAC-TCCAACAGTTTTATATC--GAAAACAACAATCC
*** * * *
6843602 CCGTTATTTTCGAGGGGATACTCCAACCCCGAG-TTTATTTCTAAAATATTAATTTCTCATAATC
319 CC---ACAATC--GGGGATACTCCAACCCCG-GTTTTATTTCCAAAACATCAATTT-T--TAATC
* *
6843666 GGGGATACTCCAA-CCCGTTATTTTCGAGGC
375 GGGGATACTCCAACCCCGTTATTTCCGAGGA
* *
6843696 GATACTCCAACCCTGGTTTTATTTCTAAAACACCAATTCTCCACATTCGGGGATACTCCAACCCC
1 GATACTCCAACCCTGATTTTATTTCTAAAACACCAATTCTCCACAATCGGGGATACTCCAACCCC
* * **
6843761 GATTTTATTTCTAAAACATCAATTTTTCATCGGGGATACTCCAATCCCGTTATTTTCGATAGGAT
66 GGTTTTATTTCCAAAACATCAATTTTTCATCGGGGATACTCCAATCCCGTTATTTTCGAGGGGAT
* *
6843826 ACTCCAACCCCGACTTTATTTCTAAAATATTAATTTCTCATAATCGAGGATACTCCAACCCCG
131 ACTCCAACCCTGACTTTATTTCTAAAATATTAATTTCTCATAATCGGGGATACTCCAACCCCG
6843889 GTTTTATTTG
Statistics
Matches: 528, Mismatches: 56, Indels: 40
0.85 0.09 0.06
Matches are distributed among these distances:
404 6 0.01
405 6 0.01
406 6 0.01
407 3 0.01
409 37 0.07
410 6 0.01
411 280 0.53
412 171 0.32
413 4 0.01
414 1 0.00
415 8 0.02
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.32
Consensus pattern (405 bp):
GATACTCCAACCCTGATTTTATTTCTAAAACACCAATTCTCCACAATCGGGGATACTCCAACCCC
GGTTTTATTTCCAAAACATCAATTTTTCATCGGGGATACTCCAATCCCGTTATTTTCGAGGGGAT
ACTCCAACCCTGACTTTATTTCTAAAATATTAATTTCTCATAATCGGGGATACTCCAACCCCGTT
ATTTTCGAGGCGATACTCCAACCCCAATTTTATTTCAAAAACACCAATTCTCCACAAACGGGGAT
ACTCCAACCCCGTTATTTCCGAGAAACTCCAACAGTTTTATATCGAAAACAACAATCCCCACAAT
CGGGGATACTCCAACCCCGGTTTTATTTCCAAAACATCAATTTTTAATCGGGGATACTCCAACCC
CGTTATTTCCGAGGA
Found at i:6843849 original size:127 final size:127
Alignment explanation
Indices: 6843615--6843935 Score: 387
Period size: 127 Copynumber: 2.5 Consensus size: 127
6843605 TTATTTTCGA
* * * *
6843615 GGGGATACTCCAACCCCGAGTTTATTTCTAAAATATTAATTTCTCATAATCGGGGATACTCCAAC
1 GGGGATACTCCAACCCCGATTTTATTTCTAAAACATCAATTTCT--TCATCGGGGATACTCCAAC
* * ** *
6843680 CCGTTATTTTCGAGGCGATACTCCAACCCTGGTTTTATTTCTAAAACACCAA-TTCTCCACATTC
64 CCGTTATTTTCGAAGCGATACTCCAACCCCGACTTTATTTCTAAAACACCAATTTCT-CACAATC
6843744 GGGGATACTCCAACCCCGATTTTATTTCTAAAACATCAATTT-TTCATCGGGGATACTCCAATCC
1 GGGGATACTCCAACCCCGATTTTATTTCTAAAACATCAATTTCTTCATCGGGGATACTCCAA-CC
* ** *
6843808 CGTTATTTTCGATAG-GATACTCCAACCCCGACTTTATTTCTAAAATATTAATTTCTCATAATC
65 CGTTATTTTCGA-AGCGATACTCCAACCCCGACTTTATTTCTAAAACACCAATTTCTCACAATC
* * * * **
6843871 GAGGATACTCCAACCCCGGTTTTATTTGTAAAACACCAATTCTCCACAATCGGGGATACTCCAAC
1 GGGGATACTCCAACCCCGATTTTATTTCTAAAACATCAATT-TCTTC-ATCGGGGATACTCCAAC
6843936 TCCAATTTTA
Statistics
Matches: 167, Mismatches: 19, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
126 17 0.10
127 86 0.51
128 7 0.04
129 41 0.25
130 16 0.10
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (127 bp):
GGGGATACTCCAACCCCGATTTTATTTCTAAAACATCAATTTCTTCATCGGGGATACTCCAACCC
GTTATTTTCGAAGCGATACTCCAACCCCGACTTTATTTCTAAAACACCAATTTCTCACAATC
Found at i:6843986 original size:52 final size:52
Alignment explanation
Indices: 6843822--6843991 Score: 200
Period size: 51 Copynumber: 3.3 Consensus size: 52
6843812 ATTTTCGATA
* * * * *
6843822 GGATACTCCAACCCCGACTTTATTTCTAAAAT-ATTAATTTCTCATAATCGA
1 GGATACTCCAACCCCGATTTTATTTCTAAAATCATCAATTTTTCACAATCGG
* * * * *
6843873 GGATACTCCAACCCCGGTTTTATTTGTAAAA-CACCAATTCTCCACAATCGG
1 GGATACTCCAACCCCGATTTTATTTCTAAAATCATCAATTTTTCACAATCGG
* * * *
6843924 GGATACTCCAACTCCAATTTTATTTCCAAAATCATCGATTTTTCACAATCGG
1 GGATACTCCAACCCCGATTTTATTTCTAAAATCATCAATTTTTCACAATCGG
6843976 GGATACTCCAACCCCG
1 GGATACTCCAACCCCG
6843992 TTATTTTCGA
Statistics
Matches: 96, Mismatches: 21, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
51 66 0.69
52 30 0.31
ACGTcount: A:0.31, C:0.28, G:0.11, T:0.31
Consensus pattern (52 bp):
GGATACTCCAACCCCGATTTTATTTCTAAAATCATCAATTTTTCACAATCGG
Found at i:6845370 original size:194 final size:193
Alignment explanation
Indices: 6845090--6845438 Score: 477
Period size: 194 Copynumber: 1.8 Consensus size: 193
6845080 ATGCAAGCTA
* * * *
6845090 GTGGCACCTTTTTAGTCCTCAAAGCGTAAGATGCCTTTTCCTCTTTTAAAGCTTACACAAGCTGG
1 GTGGCACCTTTTTAGTCCTCAAAGAGCAAGATGACTTTTCCTCTTTTAAAGCTCACACAAGCTGG
** * * **
6845155 TGGTACCTTTTAGTCCTTAAAGAGTAGGATATTTTTTCCTTTTGGAAAAAAGCCCACACAAGCTG
66 TGACACCTTTTAGTCCTTAAAGAGCAGGACACATTTTCCTTTT---AAAAAGCCCACACAAGCTG
* *
6845220 ATGGCACATTTTATTCCTCAAAGAGCAAAACACAATTTCCTTTTAAAAAAAAGCCCACATAAACT
128 ATGGCACAATTTAGTCCTCAAAGAGCAAAACACAATTTCCTTTTAAAAAAAAGCCCACATAAACT
6845285 G
193 G
* * *
6845286 GTGGCACC-TTTTAGTTCTCAAAGAGCAAGAT-ACTTTTCTTCTTTTAAAGCTCACATAAGCTGG
1 GTGGCACCTTTTTAGTCCTCAAAGAGCAAGATGACTTTTCCTCTTTTAAAGCTCACACAAGCTGG
* * * *
6845349 TGACACCTTTTAGTTCTTAAAGAGCAGGACACATTTTCCTTTTTAAAAGCTCACACAAGCTGGTG
66 TGACACCTTTTAGTCCTTAAAGAGCAGGACACATTTTCCTTTTAAAAAGCCCACACAAGCTGATG
*
6845414 GCACAATTTAGTCCTTAAAGAGCAA
131 GCACAATTTAGTCCTCAAAGAGCAA
6845439 GATATCTTTT
Statistics
Matches: 133, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
191 41 0.31
194 64 0.48
195 20 0.15
196 8 0.06
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (193 bp):
GTGGCACCTTTTTAGTCCTCAAAGAGCAAGATGACTTTTCCTCTTTTAAAGCTCACACAAGCTGG
TGACACCTTTTAGTCCTTAAAGAGCAGGACACATTTTCCTTTTAAAAAGCCCACACAAGCTGATG
GCACAATTTAGTCCTCAAAGAGCAAAACACAATTTCCTTTTAAAAAAAAGCCCACATAAACTG
Found at i:6845424 original size:63 final size:63
Alignment explanation
Indices: 6844991--6845577 Score: 391
Period size: 66 Copynumber: 9.2 Consensus size: 63
6844981 CGACAAGTAG
* * *
6844991 GACACATTTTCC-TTTTAGAAGCCCACACAAG-TCGGTGGCACCTTTTAGT-CTTCAAAGAGCAG
1 GACACATTTTCCTTTTTAAAAGCTCACACAAGCT-GGTGGCACCTTTTAGTCCTT-AAAGAGCAA
** * * * ** * * * *
6845053 GAGGC-TTTTCTTTTTCTTTTAAAGCCCATGCAAGCTAGTGGCACCTTTTTAGTCCTCAAAGCGT
1 GACACATTTTC--CTT-TTTAAAAGCTCACACAAGCTGGTGGCACC-TTTTAGTCCTTAAAGAGC
6845117 AA
62 AA
** * * * * *
6845119 GATGCCTTTTCCTCTTTT-AAAGCTTACACAAGCTGGTGGTACCTTTTAGTCCTTAAAGAGTAG
1 GACACATTTTCCT-TTTTAAAAGCTCACACAAGCTGGTGGCACCTTTTAGTCCTTAAAGAGCAA
* ** * * * * * *
6845182 GATATTTTTTCCTTTTGGAAAAAAGCCCACACAAGCTGATGGCACATTTTATTCCTCAAAGAGCA
1 GACACATTTTCCTTTT---TAAAAGCTCACACAAGCTGGTGGCACCTTTTAGTCCTTAAAGAGCA
6845247 A
63 A
* * * * * * * *
6845248 AACACAATTTCCTTTTAAAAAAAAGCCCACATAAACTGGTGGCACCTTTTAGTTCTCAAAGAGCA
1 GACACATTTTCCTTTT---TAAAAGCTCACACAAGCTGGTGGCACCTTTTAGTCCTTAAAGAGCA
6845313 A
63 A
* * * * * *
6845314 GATAC-TTTT-CTTCTTTTAAAGCTCACATAAGCTGGTGACACCTTTTAGTTCTTAAAGAGCAG
1 GACACATTTTCCTT-TTTAAAAGCTCACACAAGCTGGTGGCACCTTTTAGTCCTTAAAGAGCAA
**
6845376 GACACATTTTCCTTTTTAAAAGCTCACACAAGCTGGTGGCACAATTTAGTCCTTAAAGAGCAA
1 GACACATTTTCCTTTTTAAAAGCTCACACAAGCTGGTGGCACCTTTTAGTCCTTAAAGAGCAA
* * * * * *
6845439 GATATC-TTTTCTTTTTTAAAAGCCCACACAAGCTGGCTGGTC-TCTTTTAGTCCTAAAAAAGCA
1 GACA-CATTTTCCTTTTTAAAAGCTCACACAAGCTGG-TGG-CACCTTTTAGTCCTTAAAGAGCA
*
6845502 G
63 A
** * * ** *
6845503 GACGGATTTTCCTTTTTAAAAAAGCTCACACAAGATGGTGGCATCTTTTAGTCCCCAAAAAGCAA
1 GACACATTTTCCTTTTT--AAAAGCTCACACAAGCTGGTGGCACCTTTTAGTCCTTAAAGAGCAA
*
6845568 GAAACATTTT
1 GACACATTTT
6845578 TTTCTTTGTC
Statistics
Matches: 414, Mismatches: 88, Indels: 43
0.76 0.16 0.08
Matches are distributed among these distances:
61 5 0.01
62 50 0.12
63 104 0.25
64 59 0.14
65 61 0.15
66 128 0.31
67 7 0.02
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (63 bp):
GACACATTTTCCTTTTTAAAAGCTCACACAAGCTGGTGGCACCTTTTAGTCCTTAAAGAGCAA
Found at i:6846218 original size:20 final size:20
Alignment explanation
Indices: 6846202--6846247 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
6846192 TCGATACAAG
6846202 AGTGAATATATCAATACATA
1 AGTGAATATATCAATACATA
* *
6846222 AGTGAATGTATTAATACATA
1 AGTGAATATATCAATACATA
*
6846242 ACTGAA
1 AGTGAA
6846248 ATGTATCGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.48, C:0.09, G:0.13, T:0.30
Consensus pattern (20 bp):
AGTGAATATATCAATACATA
Found at i:6846252 original size:21 final size:20
Alignment explanation
Indices: 6846204--6846253 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
6846194 GATACAAGAG
* * *
6846204 TGAATATATCAATACATAAG
1 TGAATGTATTAATACATAAC
6846224 TGAATGTATTAATACATAAC
1 TGAATGTATTAATACATAAC
6846244 TGAAATGTAT
1 TG-AATGTAT
6846254 CGATATAGGA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 19 0.73
21 7 0.27
ACGTcount: A:0.46, C:0.08, G:0.12, T:0.34
Consensus pattern (20 bp):
TGAATGTATTAATACATAAC
Found at i:6848741 original size:79 final size:79
Alignment explanation
Indices: 6848604--6848757 Score: 202
Period size: 79 Copynumber: 1.9 Consensus size: 79
6848594 AAATTTATCA
* ** * * * *
6848604 ATCAGGGACACTCCAACCCCATTATTTTTAAGAGGATACTCTAACCCTGTTTTTATTTCCAAAAT
1 ATCAGGGACACTCCAACCCCATAATTTCAAAGAGGATACTCCAACCATATTTTCATTTCCAAAAT
6848669 ATCAATTTTTCACC
66 ATCAATTTTTCACC
* *
6848683 ATCAGGGACACTCCAACCCCATAATTTCCAAAG-GGATGCTCCAACCATATTTTCATTTCCCAAA
1 ATCAGGGACACTCCAACCCCATAATTT-CAAAGAGGATACTCCAACCATATTTTCATTTCCAAAA
*
6848747 TATCGATTTTT
65 TATCAATTTTT
6848758 ATTGGGGATA
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
79 61 0.95
80 3 0.05
ACGTcount: A:0.31, C:0.27, G:0.10, T:0.33
Consensus pattern (79 bp):
ATCAGGGACACTCCAACCCCATAATTTCAAAGAGGATACTCCAACCATATTTTCATTTCCAAAAT
ATCAATTTTTCACC
Found at i:6848867 original size:126 final size:126
Alignment explanation
Indices: 6848637--6848906 Score: 305
Period size: 126 Copynumber: 2.1 Consensus size: 126
6848627 ATTTTTAAGA
*
6848637 GGATACTCTAACCCTGTTTTTATTTCCAAAATATCAATTTTTCACCATCAGGGACACTCCAACCC
1 GGATACTCCAACCCTGTTTTTATTTCCAAAATATCAATTTTTCACCATCAGGGACACTCCAACCC
* * *
6848702 CATAATTTCCAAAGGGATGCTCCAACCATATTTTCATTTCCCAAATATCGATTTTTATTGG
66 CATAATTTCCAAAGGGATACTCCAACCATATTTTCATTTCCAAAATATCAATTTTTATTGG
* ** *
6848763 GGATACTCCAA-CCTCGTTTTTATTTCCAAAATAT-ATGTTTTTCACCATTGGGGATACTCCAAC
1 GGATACTCCAACCCT-GTTTTTATTTCCAAAATATCA-ATTTTTCACCATCAGGGACACTCCAAC
* * * * * *
6848826 TCCATCATTTCC-GAGAGGATACTCCAACTC-TGTTTTTATTTCTAAAATATCAATTTTTCACCA
64 CCCATAATTTCCAAAG-GGATACTCCAAC-CATATTTTCATTTCCAAAATATCAATTTTT----A
6848889 TTGG
123 TTGG
*
6848893 GGATACTTCAACCC
1 GGATACTCCAACCC
6848907 CATCATTTTC
Statistics
Matches: 120, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
125 6 0.05
126 96 0.80
127 1 0.01
130 15 0.12
131 2 0.02
ACGTcount: A:0.28, C:0.25, G:0.11, T:0.36
Consensus pattern (126 bp):
GGATACTCCAACCCTGTTTTTATTTCCAAAATATCAATTTTTCACCATCAGGGACACTCCAACCC
CATAATTTCCAAAGGGATACTCCAACCATATTTTCATTTCCAAAATATCAATTTTTATTGG
Found at i:6848995 original size:80 final size:80
Alignment explanation
Indices: 6848761--6849132 Score: 376
Period size: 79 Copynumber: 4.6 Consensus size: 80
6848751 GATTTTTATT
* * ***
6848761 GGGGATACTCCAA-CCTCGTTTTTATTTCCAAAATAT-ATGTTTTTCACCATTGGGGATACTCCA
1 GGGGATACTCCAACCCT-ATTTTTACTTCCAAAATATCAAAATTTTCACCATTGGGGATACTCCA
*
6848824 ACTCCATCATTTCCGA
65 ACCCCATCATTTCCGA
* * * * * * *
6848840 GAGGATACTCCAACTCTGTTTTTATTTCTAAAATATC-AATTTTTCACCATTGGGGATACTTCAA
1 GGGGATACTCCAACCCTATTTTTACTTCCAAAATATCAAAATTTTCACCATTGGGGATACTCCAA
*
6848904 CCCCATCATTTTCGA
66 CCCCATCATTTCCGA
** * * * *
6848919 GGGGATACTCTTACCCCATTTTTACTTCCTAAATATCAAAATTTTCACCATCGAGGATACTCCAA
1 GGGGATACTCCAACCCTATTTTTACTTCCAAAATATCAAAATTTTCACCATTGGGGATACTCCAA
* * *
6848984 CCCCATTATTTTCAA
66 CCCCATCATTTCCGA
* * ** * * *
6848999 GGGGATACTCTAATCTCGT-TTTTTACTTCCAAAAATATTGAATTTTTTACCATTGGAGATA-TC
1 GGGGATACTCCAA-C-CCTATTTTTACTTCC-AAAATATCAAAATTTTCACCATTGGGGATACT-
6849062 CCAACCCCATCATTTCCGA
62 CCAACCCCATCATTTCCGA
*
6849081 GGGGATACTCCAACCCTATTTTTACTTTCAAAAATATCAAAATTTTCACCAT
1 GGGGATACTCCAACCCTATTTTTAC-TTCCAAAATATCAAAATTTTCACCAT
6849133 CATGGGTACT
Statistics
Matches: 240, Mismatches: 44, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
79 95 0.40
80 52 0.22
81 39 0.16
82 54 0.22
ACGTcount: A:0.29, C:0.24, G:0.11, T:0.36
Consensus pattern (80 bp):
GGGGATACTCCAACCCTATTTTTACTTCCAAAATATCAAAATTTTCACCATTGGGGATACTCCAA
CCCCATCATTTCCGA
Found at i:6849084 original size:162 final size:160
Alignment explanation
Indices: 6848761--6849133 Score: 432
Period size: 162 Copynumber: 2.3 Consensus size: 160
6848751 GATTTTTATT
* * * *** * *
6848761 GGGGATACTCCAACCTCGTTTTTA-TTTCCAAAATAT-ATGTTTTTCACCATTGGGGATACTCCA
1 GGGGATACTCCAACCCCATTTTTACTTTCAAAAATATCAAAATTTTCACCATCGAGGATACTCCA
* * * *
6848824 ACTCCATCATTTCCGAGAGGATACTCCAACTCTGTTTTTATTTCTAAAATATCAATTTTTCACCA
66 ACCCCATCATTTCCAAGAGGATACTCCAACTCTGTTTTTATTCCAAAAATATCAATTTTTCACCA
* * *
6848889 TTGGGGATACTTCAACCCCATCATTTTCGA
131 TTGGAGATACTCCAACCCCATCATTTCCGA
** **
6848919 GGGGATACTCTTACCCCATTTTTAC-TTCCTAAATATCAAAATTTTCACCATCGAGGATACTCCA
1 GGGGATACTCCAACCCCATTTTTACTTTCAAAAATATCAAAATTTTCACCATCGAGGATACTCCA
* * * * * *
6848983 ACCCCATTATTTTCAAGGGGATACTCTAA-TCTCGTTTTTTACTTCCAAAAATATTGAATTTTTT
66 ACCCCATCATTTCCAAGAGGATACTCCAACTCT-G-TTTTTA-TTCCAAAAATA-TCAATTTTTC
6849047 ACCATTGGAGATA-TCCCAACCCCATCATTTCCGA
127 ACCATTGGAGATACT-CCAACCCCATCATTTCCGA
*
6849081 GGGGATACTCCAACCCTATTTTTACTTTCAAAAATATCAAAATTTTCACCATC
1 GGGGATACTCCAACCCCATTTTTACTTTCAAAAATATCAAAATTTTCACCATC
6849134 ATGGGTACTC
Statistics
Matches: 179, Mismatches: 28, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
158 33 0.18
159 46 0.26
160 6 0.03
161 10 0.06
162 59 0.33
163 25 0.14
ACGTcount: A:0.29, C:0.25, G:0.11, T:0.36
Consensus pattern (160 bp):
GGGGATACTCCAACCCCATTTTTACTTTCAAAAATATCAAAATTTTCACCATCGAGGATACTCCA
ACCCCATCATTTCCAAGAGGATACTCCAACTCTGTTTTTATTCCAAAAATATCAATTTTTCACCA
TTGGAGATACTCCAACCCCATCATTTCCGA
Done.