Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold25
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9553305
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 6276 characters in sequence are not A, C, G, or T
File 41 of 56
Found at i:6982819 original size:23 final size:21
Alignment explanation
Indices: 6982793--6982835 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
6982783 TATTAAAATA
6982793 ATAAGATGAATAATTGATTTTAT
1 ATAA-ATGAATAATT-ATTTTAT
* *
6982816 ATAAATGGATTATTATTTTA
1 ATAAATGAATAATTATTTTA
6982836 AATGTACATC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 6 0.33
22 8 0.44
23 4 0.22
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.47
Consensus pattern (21 bp):
ATAAATGAATAATTATTTTAT
Found at i:6986382 original size:42 final size:42
Alignment explanation
Indices: 6986327--6986684 Score: 211
Period size: 42 Copynumber: 8.5 Consensus size: 42
6986317 ATGCGAAGGT
* * *
6986327 AGACAAAAAGTAAAGAAGTCTTTAAGGTCAAAGCCGACAGGT
1 AGACTAAAGGTAAAGAAGTCTTTAAGGTCAAAGCCGACAGGC
* *
6986369 AGATTAAAGGTAAAGAAGT-TTTCATA-GTCAAAGCCGACAGAC
1 AGACTAAAGGTAAAGAAGTCTTT-A-AGGTCAAAGCCGACAGGC
* * * * * * * *
6986411 AGACTAAAGATAAAGAACTTTTTAAAGTTAAAAGCTGATAGGT
1 AGACTAAAGGTAAAGAAGTCTTT-AAGGTCAAAGCCGACAGGC
* * * * * *
6986454 AGACT-AAGAGTGAAGAAGCCTCTAGGGTCAAAGCTGATAAGGC
1 AGACTAAAG-GTAAAGAAGTCTTTAAGGTCAAAGCCGA-CAGGC
* * * * *
6986497 AGACTAAAGGTGAAGGAGTCTCTAGGGTCAAAGCCGACAAGC
1 AGACTAAAGGTAAAGAAGTCTTTAAGGTCAAAGCCGACAGGC
** * * * **
6986539 AGACTAAAGGTTATGGTAGTC-TTCAGCGTTAAAGTTGACAGGC
1 AGACTAAAGG-TAAAGAAGTCTTTAAG-GTCAAAGCCGACAGGC
* * * ** * * *
6986582 AGACTAAGGGTGAAGGAGTCTCCAAGGTTAAAGCTGACAGAC
1 AGACTAAAGGTAAAGAAGTCTTTAAGGTCAAAGCCGACAGGC
* * ** * *
6986624 AAACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGCCAACAAGC
1 AGACTAAAGGTAAAGAAGTCTTTAAGGTCAAAGCCGACAGGC
*
6986666 AGACTAAAGGTGAAGAAGT
1 AGACTAAAGGTAAAGAAGT
6986685 TAGAAGGTTA
Statistics
Matches: 241, Mismatches: 65, Indels: 20
0.74 0.20 0.06
Matches are distributed among these distances:
41 3 0.01
42 145 0.60
43 90 0.37
44 3 0.01
ACGTcount: A:0.40, C:0.15, G:0.26, T:0.19
Consensus pattern (42 bp):
AGACTAAAGGTAAAGAAGTCTTTAAGGTCAAAGCCGACAGGC
Found at i:6986501 original size:43 final size:43
Alignment explanation
Indices: 6986441--6986549 Score: 143
Period size: 43 Copynumber: 2.6 Consensus size: 43
6986431 TTTAAAGTTA
*
6986441 AAAGCTGAT-AGGTAGACT-AAGAGTGAAGAAGCCTCTAGGGTC
1 AAAGCTGATAAGGCAGACTAAAG-GTGAAGAAGCCTCTAGGGTC
* *
6986483 AAAGCTGATAAGGCAGACTAAAGGTGAAGGAGTCTCTAGGGTC
1 AAAGCTGATAAGGCAGACTAAAGGTGAAGAAGCCTCTAGGGTC
* *
6986526 AAAGCCGACAA-GCAGACTAAAGGT
1 AAAGCTGATAAGGCAGACTAAAGGT
6986550 TATGGTAGTC
Statistics
Matches: 60, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
42 22 0.37
43 35 0.58
44 3 0.05
ACGTcount: A:0.38, C:0.16, G:0.30, T:0.17
Consensus pattern (43 bp):
AAAGCTGATAAGGCAGACTAAAGGTGAAGAAGCCTCTAGGGTC
Found at i:6986759 original size:42 final size:42
Alignment explanation
Indices: 6986701--6986828 Score: 121
Period size: 42 Copynumber: 3.0 Consensus size: 42
6986691 GTTAAAGTCG
* *
6986701 AAAAGAAGTCTTTAGGGTCAAAGCCGACATGCAGACTAAAGGT
1 AAAA-AAGTCTCTAGGGTCAAAGCCGACAAGCAGACTAAAGGT
* * * * * *
6986744 AAAAAAGTGTCTAGGGTCAAAGTCAATAGGTAGACTAAAGGT
1 AAAAAAGTCTCTAGGGTCAAAGCCGACAAGCAGACTAAAGGT
* ** * *
6986786 TAGGAAGTCTCCAAGGTCAAAGCCGACAAGCAGACTTAAAGGT
1 AAAAAAGTCTCTAGGGTCAAAGCCGACAAGCAGAC-TAAAGGT
6986829 GAAGAAGTTA
Statistics
Matches: 66, Mismatches: 18, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
42 55 0.83
43 11 0.17
ACGTcount: A:0.40, C:0.16, G:0.26, T:0.19
Consensus pattern (42 bp):
AAAAAAGTCTCTAGGGTCAAAGCCGACAAGCAGACTAAAGGT
Found at i:6986876 original size:152 final size:152
Alignment explanation
Indices: 6986626--6986973 Score: 617
Period size: 152 Copynumber: 2.3 Consensus size: 152
6986616 TGACAGACAA
* *
6986626 ACTAAAGGTAAGGAAGTCTCCAAGGTCAAAGCCAACAAGCAGAC-TAAAGGTGAAGAAGTTAGAA
1 ACTAAAGGTTAGGAAGTCTCCAAGGTCAAAGCCGACAAGCAGACTTAAAGGTGAAGAAGTTAGAA
* *
6986690 GGTTAAAGTCGAAAAGAAGTCTTTAGGGTCAAAGCCGACATGCAGACTAAAGGTAAAAAAGTGTC
66 GGTCAAAGTCAAAAAGAAGTCTTTAGGGTCAAAGCCGACATGCAGACTAAAGGTAAAAAAGTGTC
* *
6986755 TAGGGTCAAAGTCAATAGGTAG
131 TAAGGTCAAAGTCAATAGGCAG
6986777 ACTAAAGGTTAGGAAGTCTCCAAGGTCAAAGCCGACAAGCAGACTTAAAGGTGAAGAAGTTAGAA
1 ACTAAAGGTTAGGAAGTCTCCAAGGTCAAAGCCGACAAGCAGACTTAAAGGTGAAGAAGTTAGAA
*
6986842 GGTCAAAGTCAAAAAGAAGTCTTTATGGTCAAAGCCGACATGCAGACTAAAGGTAAAAAAGTGTC
66 GGTCAAAGTCAAAAAGAAGTCTTTAGGGTCAAAGCCGACATGCAGACTAAAGGTAAAAAAGTGTC
*
6986907 TAAGGTCAAAGTCGATAGGCAG
131 TAAGGTCAAAGTCAATAGGCAG
6986929 ACTAAAGGTTAGGAAGTCTCCAAGGTCAAAGCCGACAAGCAGACT
1 ACTAAAGGTTAGGAAGTCTCCAAGGTCAAAGCCGACAAGCAGACT
6986974 AAATGTTAAA
Statistics
Matches: 188, Mismatches: 8, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
151 42 0.22
152 146 0.78
ACGTcount: A:0.41, C:0.16, G:0.26, T:0.18
Consensus pattern (152 bp):
ACTAAAGGTTAGGAAGTCTCCAAGGTCAAAGCCGACAAGCAGACTTAAAGGTGAAGAAGTTAGAA
GGTCAAAGTCAAAAAGAAGTCTTTAGGGTCAAAGCCGACATGCAGACTAAAGGTAAAAAAGTGTC
TAAGGTCAAAGTCAATAGGCAG
Found at i:6986915 original size:42 final size:42
Alignment explanation
Indices: 6986868--6987066 Score: 164
Period size: 42 Copynumber: 4.7 Consensus size: 42
6986858 AAGTCTTTAT
* * *
6986868 GGTCAAAGCCGACATGCAGACTAAAGGTAAAAAAGTGTCTAA
1 GGTCAAAGCCGACAGGCAGACTAAAGGTAAAAAAGTCTCCAA
* * * **
6986910 GGTCAAAGTCGATAGGCAGACTAAAGGTTAGGAAGTCTCCAA
1 GGTCAAAGCCGACAGGCAGACTAAAGGTAAAAAAGTCTCCAA
* * * *
6986952 GGTCAAAGCCGACAAGCAGACTAAATGTTAAAAAGTCTCTAA
1 GGTCAAAGCCGACAGGCAGACTAAAGGTAAAAAAGTCTCCAA
* ** * *** *
6986994 GGACTAAAGTTGACAGGTAGACTAAAGGTAAAGTCGTTTCCAA
1 GGTC-AAAGCCGACAGGCAGACTAAAGGTAAAAAAGTCTCCAA
* ** * *
6987037 GGTCAAAACTAACATGCAGACTAAAAGTAA
1 GGTCAAAGCCGACAGGCAGACTAAAGGTAA
6987067 GGAATTAGAA
Statistics
Matches: 122, Mismatches: 34, Indels: 2
0.77 0.22 0.01
Matches are distributed among these distances:
42 92 0.75
43 30 0.25
ACGTcount: A:0.41, C:0.17, G:0.23, T:0.19
Consensus pattern (42 bp):
GGTCAAAGCCGACAGGCAGACTAAAGGTAAAAAAGTCTCCAA
Found at i:6986971 original size:84 final size:85
Alignment explanation
Indices: 6986868--6987022 Score: 231
Period size: 84 Copynumber: 1.8 Consensus size: 85
6986858 AAGTCTTTAT
* * * *
6986868 GGTCAAAGCCGACATGCAGACTAAAGGTAAAAAAGTGTCTAAGGTC-AAAGTCGATAGGCAGACT
1 GGTCAAAGCCGACAAGCAGACTAAAGGTAAAAAAGTCTCTAAGGACTAAAGTCGACAGGCAGACT
6986932 AAAGGTTAGGAAGTCTCCAA
66 AAAGGTTAGGAAGTCTCCAA
* * * *
6986952 GGTCAAAGCCGACAAGCAGACTAAATGTTAAAAAGTCTCTAAGGACTAAAGTTGACAGGTAGACT
1 GGTCAAAGCCGACAAGCAGACTAAAGGTAAAAAAGTCTCTAAGGACTAAAGTCGACAGGCAGACT
6987017 AAAGGT
66 AAAGGT
6987023 AAAGTCGTTT
Statistics
Matches: 62, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
84 41 0.66
85 21 0.34
ACGTcount: A:0.40, C:0.16, G:0.25, T:0.19
Consensus pattern (85 bp):
GGTCAAAGCCGACAAGCAGACTAAAGGTAAAAAAGTCTCTAAGGACTAAAGTCGACAGGCAGACT
AAAGGTTAGGAAGTCTCCAA
Found at i:6987040 original size:85 final size:84
Alignment explanation
Indices: 6986854--6987066 Score: 237
Period size: 85 Copynumber: 2.5 Consensus size: 84
6986844 TCAAAGTCAA
** * * *
6986854 AAAGAAGTCTTTATGGTCAAAGCCGACATGCAGACTAAAGGTAAAAAAGTGTCTAAGGTCAAAGT
1 AAAGAAGTCTCCAAGGTCAAAGCCGACATGCAGACTAAAGGTAAAAAAGTCTCTAAGGACAAAGT
*
6986919 CGATAGGCAGACTAAAGGT
66 CGACAGGCAGACTAAAGGT
* * * * *
6986938 TAGGAAGTCTCCAAGGTCAAAGCCGACAAGCAGACTAAATGTTAAAAAGTCTCTAAGGACTAAAG
1 AAAGAAGTCTCCAAGGTCAAAGCCGACATGCAGACTAAAGGTAAAAAAGTCTCTAAGGAC-AAAG
* *
6987003 TTGACAGGTAGACTAAAGGT
65 TCGACAGGCAGACTAAAGGT
** * * ** *
6987023 AAAGTCGTTTCCAAGGTCAAAACTAACATGCAGACTAAAAGTAA
1 AAAGAAGTCTCCAAGGTCAAAGCCGACATGCAGACTAAAGGTAA
6987067 GGAATTAGAA
Statistics
Matches: 104, Mismatches: 24, Indels: 1
0.81 0.19 0.01
Matches are distributed among these distances:
84 50 0.48
85 54 0.52
ACGTcount: A:0.41, C:0.16, G:0.23, T:0.20
Consensus pattern (84 bp):
AAAGAAGTCTCCAAGGTCAAAGCCGACATGCAGACTAAAGGTAAAAAAGTCTCTAAGGACAAAGT
CGACAGGCAGACTAAAGGT
Found at i:6987139 original size:42 final size:42
Alignment explanation
Indices: 6987093--6987633 Score: 237
Period size: 42 Copynumber: 12.9 Consensus size: 42
6987083 AGCTAAAAAC
* * *
6987093 AAGTCTCTAAAGTCAAAGTCGACATGTAGA-TGAAGGATAAAG
1 AAGTCTCTAAGGTCAAAGTCGACAAGTAGACTAAAGG-TAAAG
* * * *
6987135 AAGTCTCCAGGGTCAAATTCGATAAGTAGACTAAAGGTAAA-
1 AAGTCTCTAAGGTCAAAGTCGACAAGTAGACTAAAGGTAAAG
* *
6987176 AGAGTCT-TTAGGATCAAAGTCGACAAGCAGACTAAAGGTAAAG
1 A-AGTCTCTAAGG-TCAAAGTCGACAAGTAGACTAAAGGTAAAG
** * * * * * *
6987219 AAGT-TAGAAAGTCAAAGCCGACAAGCAGAATAAAGGTTAGG
1 AAGTCTCTAAGGTCAAAGTCGACAAGTAGACTAAAGGTAAAG
* * *
6987260 AAGTTTCTAAGGTCAAAG-CTGATAGGCT-GACTAAAGGT-AAG
1 AAGTCTCTAAGGTCAAAGTC-GACAAG-TAGACTAAAGGTAAAG
* * * * * * *
6987301 AAAGTCTCCAAGGTCAAAGATTGACATGCAGACTGAAGGTTAGG
1 -AAGTCTCTAAGGTCAAAG-TCGACAAGTAGACTAAAGGTAAAG
* ** * * *
6987345 AAGTCTTTAAGGTCAAAGTCGACTGGTAAATTGAAGGTAAAG
1 AAGTCTCTAAGGTCAAAGTCGACAAGTAGACTAAAGGTAAAG
* * *
6987387 AAATCTCT-AGAGTCAAAGTCGACAAGTAGACCAAAGGTAAAT
1 AAGTCTCTAAG-GTCAAAGTCGACAAGTAGACTAAAGGTAAAG
* * * * * * * * * * *
6987429 ATGTCTCCAGGGTCAAATTTGATAGGCAGACCAAAAGT-TAG
1 AAGTCTCTAAGGTCAAAGTCGACAAGTAGACTAAAGGTAAAG
* * * * * * * *
6987470 AAAGCCTTTAGGGTCAAAGCCGACATGCAAACTAAAGGT-TAG
1 -AAGTCTCTAAGGTCAAAGTCGACAAGTAGACTAAAGGTAAAG
* * * * *
6987512 AAAGTCTTTAGGGTCAAA-ACTGACAAGTAGACTAGAGGTAAGG
1 -AAGTCTCTAAGGTCAAAGTC-GACAAGTAGACTAAAGGTAAAG
* * * *
6987555 AAGT-TTTCAGGGTCAAAG-CTGACAAGTAGACTAAAGGTTAGG
1 AAGTCTCT-AAGGTCAAAGTC-GACAAGTAGACTAAAGGTAAAG
* * * * *
6987597 AATTTTCCAAGGTCAAAG-CTGACAAGCAAACTAAAGG
1 AAGTCTCTAAGGTCAAAGTC-GACAAGTAGACTAAAGG
6987634 CTAGGAAGAT
Statistics
Matches: 383, Mismatches: 95, Indels: 42
0.74 0.18 0.08
Matches are distributed among these distances:
41 44 0.11
42 299 0.78
43 38 0.10
44 2 0.01
ACGTcount: A:0.40, C:0.14, G:0.25, T:0.21
Consensus pattern (42 bp):
AAGTCTCTAAGGTCAAAGTCGACAAGTAGACTAAAGGTAAAG
Found at i:6987364 original size:168 final size:167
Alignment explanation
Indices: 6987164--6987618 Score: 423
Period size: 168 Copynumber: 2.7 Consensus size: 167
6987154 CGATAAGTAG
* * *
6987164 ACTAAAGG-TAAAAGAGTCTTT-AGGATCAAAGTCGACAAGCAGACTAAAGGTAAAGAAGTTAGA
1 ACTAAAGGTTAGAA-AGTCTTTAAGG-TCAAAGTCGACAAGTAGACTAAAGGTAAAGAAGTTACA
* * * * * *
6987227 AAGTCAAAGCCGACAAGCAGAATAAAGGTTAGGAAGTTTCTAAGGTCAAAGCTGATAGGCTGACT
64 GAGTCAAAGCCGACAAGTAGACTAAAGGTTAGGAAGTTTCCAAGGTCAAAGCTGATAGGCAGACC
* * ** *
6987292 AAAGGTAAGAAAGTCTCCAAGGTCAAAGATTGACATGCAG
129 AAAAGTAAGAAAGCCTCCAAGGTCAAAG-CCGACATGCAA
* * ** * * * *
6987332 ACTGAAGGTTAGGAAGTCTTTAAGGTCAAAGTCGACTGGTAAATTGAAGGTAAAGAAATCT-CTA
1 ACTAAAGGTTAGAAAGTCTTTAAGGTCAAAGTCGACAAGTAGACTAAAGGTAAAGAAGT-TAC-A
* * * ** * * * **
6987396 GAGTCAAAGTCGACAAGTAGACCAAAGGTAAATATGTCTCCAGGGTCAAATTTGATAGGCAGACC
64 GAGTCAAAGCCGACAAGTAGACTAAAGGTTAGGAAGTTTCCAAGGTCAAAGCTGATAGGCAGACC
* ** *
6987461 AAAAGTTAGAAAGCCTTTAGGGTCAAAGCCGACATGCAA
129 AAAAGTAAGAAAGCCTCCAAGGTCAAAGCCGACATGCAA
* * * * *
6987500 ACTAAAGGTTAGAAAGTCTTTAGGGTCAAA-ACTGACAAGTAGACTAGAGGTAAGGAAGTTTTCA
1 ACTAAAGGTTAGAAAGTCTTTAAGGTCAAAGTC-GACAAGTAGACTAAAGGTAAAGAAG-TTACA
* * *
6987564 GGGTCAAAGCTGACAAGTAGACTAAAGGTTAGGAATTTTCCAAGGTCAAAGCTGA
64 GAGTCAAAGCCGACAAGTAGACTAAAGGTTAGGAAGTTTCCAAGGTCAAAGCTGA
6987619 CAAGCAAACT
Statistics
Matches: 219, Mismatches: 61, Indels: 14
0.74 0.21 0.05
Matches are distributed among these distances:
167 1 0.00
168 137 0.63
169 81 0.37
ACGTcount: A:0.40, C:0.14, G:0.25, T:0.21
Consensus pattern (167 bp):
ACTAAAGGTTAGAAAGTCTTTAAGGTCAAAGTCGACAAGTAGACTAAAGGTAAAGAAGTTACAGA
GTCAAAGCCGACAAGTAGACTAAAGGTTAGGAAGTTTCCAAGGTCAAAGCTGATAGGCAGACCAA
AAGTAAGAAAGCCTCCAAGGTCAAAGCCGACATGCAA
Found at i:6987595 original size:126 final size:125
Alignment explanation
Indices: 6987158--6987595 Score: 338
Period size: 126 Copynumber: 3.5 Consensus size: 125
6987148 CAAATTCGAT
** * * *
6987158 AAGTAGACTAAAGGTAA-AAGAGTCTTTAGGATCAAAGTCGACAAGCAGACTAAAGG-TAAAGAA
1 AAGTAGACTAAAGGTAAGAA-AGTCTCCAGGGTCAAAGTTGACAAGCAGACTAAAGGTTAGA-AA
* * * * * * *
6987221 G--TTAGAAAGTCAAAGCCGACAAGCAGAATAAAGGTTAGGAAGT-TTCTAAGGTCAAAGCTGAT
64 GCCTT-TAAGGTCAAAGCCGACATGCA-AATAAAGGTTAGAAAGTCTT-TAGGGTCAAAACTGAC
* * * * *
6987283 AGGCT-GACTAAAGGTAAGAAAGTCTCCAAGGTCAAAGATTGACATGCAGACTGAAGGTTAGGAA
1 AAG-TAGACTAAAGGTAAGAAAGTCTCCAGGGTCAAAG-TTGACAAGCAGACTAAAGGTTAGAAA
* * * * * * * *
6987347 GTCTTTAAGGTCAAAGTCGAC-TGGTAAATTGAAGGTAAAGAAA-TCTCTAGAGTC-AAAGTCGA
64 GCCTTTAAGGTCAAAGCCGACAT-GCAAA-TAAAGGT-TAGAAAGTCTTTAGGGTCAAAACT-GA
6987409 C
125 C
* * * * * * *
6987410 AAGTAGACCAAAGGTAA-ATATGTCTCCAGGGTCAAATTTGATAGGCAGACCAAAAGTTAGAAAG
1 AAGTAGACTAAAGGTAAGA-AAGTCTCCAGGGTCAAAGTTGACAAGCAGACTAAAGGTTAGAAAG
*
6987474 CCTTTAGGGTCAAAGCCGACATGCAAACTAAAGGTTAGAAAGTCTTTAGGGTCAAAACTGAC
65 CCTTTAAGGTCAAAGCCGACATGCAAA-TAAAGGTTAGAAAGTCTTTAGGGTCAAAACTGAC
* * * * * *
6987536 AAGTAGACTAGAGGTAAGGAAGTTTTCAGGGTCAAAGCTGACAAGTAGACTAAAGGTTAG
1 AAGTAGACTAAAGGTAAGAAAGTCTCCAGGGTCAAAGTTGACAAGCAGACTAAAGGTTAG
6987596 GAATTTTCCA
Statistics
Matches: 238, Mismatches: 58, Indels: 33
0.72 0.18 0.10
Matches are distributed among these distances:
125 32 0.13
126 135 0.57
127 64 0.27
128 7 0.03
ACGTcount: A:0.40, C:0.14, G:0.25, T:0.21
Consensus pattern (125 bp):
AAGTAGACTAAAGGTAAGAAAGTCTCCAGGGTCAAAGTTGACAAGCAGACTAAAGGTTAGAAAGC
CTTTAAGGTCAAAGCCGACATGCAAATAAAGGTTAGAAAGTCTTTAGGGTCAAAACTGAC
Found at i:6987720 original size:42 final size:42
Alignment explanation
Indices: 6987650--6987828 Score: 189
Period size: 42 Copynumber: 4.3 Consensus size: 42
6987640 AGATCTTGTC
* *
6987650 AGACTAAAGGTTAGGAAGACTCTAGGGTCAAAGCCGATAGGA
1 AGACTAAAGGTTAAGAAGTCTCTAGGGTCAAAGCCGATAGGA
* * *
6987692 AGACAAAAAGTGAAGAAGTCTCTAGGGTCAAAGCCGATAGGTA
1 AGACTAAAGGTTAAGAAGTCTCTAGGGTCAAAGCCGATAGG-A
* * * * * *
6987735 A-ATTAAAGGTTAGGAAGTCTCTAGGGTTAAAGTCGATAAGC
1 AGACTAAAGGTTAAGAAGTCTCTAGGGTCAAAGCCGATAGGA
* * * * * *
6987776 AGACTAAAGGTTAAAAAGTCTCCAGTGCCAAAGCCGATAAGC
1 AGACTAAAGGTTAAGAAGTCTCTAGGGTCAAAGCCGATAGGA
6987818 AGACTAAAGGT
1 AGACTAAAGGT
6987829 AAGGAACTTA
Statistics
Matches: 113, Mismatches: 22, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
41 1 0.01
42 110 0.97
43 2 0.02
ACGTcount: A:0.40, C:0.15, G:0.27, T:0.19
Consensus pattern (42 bp):
AGACTAAAGGTTAAGAAGTCTCTAGGGTCAAAGCCGATAGGA
Found at i:6987826 original size:84 final size:84
Alignment explanation
Indices: 6987649--6987834 Score: 219
Period size: 84 Copynumber: 2.2 Consensus size: 84
6987639 AAGATCTTGT
* *
6987649 CAGACTAAAGGTTAGGAAGACTCTAGGGTCAAAGCCGATAGGAAGACAAAAAGTGAAGAAGTCTC
1 CAGACTAAAGGTTAGGAAGACTCTAGGGTCAAAGCCGATAAGAAGACAAAAAGTGAAAAAGTCTC
* * *
6987714 TAGGGTCAAAGCCGATAGG
66 CAGGGCCAAAGCCGATAAG
* * * * * * * * * *
6987733 TAAATTAAAGGTTAGGAAGTCTCTAGGGTTAAAGTCGATAAGCAGACTAAAGGTTAAAAAGTCTC
1 CAGACTAAAGGTTAGGAAGACTCTAGGGTCAAAGCCGATAAGAAGACAAAAAGTGAAAAAGTCTC
*
6987798 CAGTGCCAAAGCCGATAAG
66 CAGGGCCAAAGCCGATAAG
*
6987817 CAGACTAAAGGTAAGGAA
1 CAGACTAAAGGTTAGGAA
6987835 CTTAGAAGGT
Statistics
Matches: 82, Mismatches: 20, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
84 82 1.00
ACGTcount: A:0.40, C:0.15, G:0.27, T:0.18
Consensus pattern (84 bp):
CAGACTAAAGGTTAGGAAGACTCTAGGGTCAAAGCCGATAAGAAGACAAAAAGTGAAAAAGTCTC
CAGGGCCAAAGCCGATAAG
Found at i:6987917 original size:42 final size:42
Alignment explanation
Indices: 6987858--6988742 Score: 352
Period size: 42 Copynumber: 21.4 Consensus size: 42
6987848 AGCCGAAAAA
* *
6987858 AAGTCTCTAGGGTCAAAGCTGATAGGCAGA-TGAAGGGTAAAG
1 AAGTCTCTAGGGTCAAAGCTGACAGGCAGACT-AAAGGTAAAG
* * * *
6987900 AAGTCTCTAGGGTCAAAGCTAACAAGTAGACTAAAGGT-ACG
1 AAGTCTCTAGGGTCAAAGCTGACAGGCAGACTAAAGGTAAAG
* * ** * * *
6987941 AAAGTTTCTAAGGTCAAAATTGACAAGCAGACTAAACGTCAAG
1 -AAGTCTCTAGGGTCAAAGCTGACAGGCAGACTAAAGGTAAAG
* * * *
6987984 AAGTCTCTAAGGTCAAAG-TCGATAGGAACACTAAAGG-AGAAG
1 AAGTCTCTAGGGTCAAAGCT-GACAGGCAGACTAAAGGTA-AAG
* * *
6988026 AAGTCTCTAGGGTCAAAGCCGACAGGCAAACT-AAGAGTAAGG
1 AAGTCTCTAGGGTCAAAGCTGACAGGCAGACTAAAG-GTAAAG
* * *
6988068 AAGTCTCTAGAGTCAAAGCTGACAGCCAAACTAAAGGT-AAG
1 AAGTCTCTAGGGTCAAAGCTGACAGGCAGACTAAAGGTAAAG
** * * * * * * * * *
6988109 AAAGT-TAGAAGGTCAAAGCCGAAAAGAAGTCTCTAGGGT-TA-
1 -AAGTCTCTAGGGTCAAAGCTGACAGGCAGACT-AAAGGTAAAG
* * **
6988150 AAG-CTGAC-A-GG-CAAA-CT-AAAGGTAAGAAGAAAGGT--AG
1 AAGTCT--CTAGGGTCAAAGCTGACAGG-CAGACTAAAGGTAAAG
** * * *
6988187 -A------A-GGTCAAAGCCAACAGGCAGAATAAAGGTTAGG
1 AAGTCTCTAGGGTCAAAGCTGACAGGCAGACTAAAGGTAAAG
* * * * * * *
6988221 AAGTCTTTAAGGTTAAAG-TCGATAGGTAGACAAAAGGT-ACG
1 AAGTCTCTAGGGTCAAAGCT-GACAGGCAGACTAAAGGTAAAG
* * * * * * *
6988262 AAAGTCTTTAGGGTCAAAACCGACAAGCAGATTAAAAGTTAAG
1 -AAGTCTCTAGGGTCAAAGCTGACAGGCAGACTAAAGGTAAAG
* * * *
6988305 AAGTCTCTAGGGTCAAAG-TCGATAGGAAGACTAAAAGTAAGG
1 AAGTCTCTAGGGTCAAAGCT-GACAGGCAGACTAAAGGTAAAG
* * * *
6988347 AAGTC-CTTAGGATCAAAGCCGACAAGCAGACTAAAGGTAAGG
1 AAGTCTC-TAGGGTCAAAGCTGACAGGCAGACTAAAGGTAAAG
* * * * * * * * *
6988389 AAGTCTCCAAGATGAAAGCTTACAAGTAGACTAAAGGTTAGG
1 AAGTCTCTAGGGTCAAAGCTGACAGGCAGACTAAAGGTAAAG
* * * * *
6988431 AAGT-TTTCAAGGTGAAAGCTGATAGGCAGACTAAAGGT-TAG
1 AAGTCTCT-AGGGTCAAAGCTGACAGGCAGACTAAAGGTAAAG
* * * *
6988472 AAAGTCTCTAAGGTCAAAG-TCGACAGGCATAATAAAGGTTAAG
1 -AAGTCTCTAGGGTCAAAGCT-GACAGGCAGACTAAAGGTAAAG
* * * * * *
6988515 AAGTCTTTAAGGTCAAAG-TCAACAAGCAAACTAAA-GTTAAG
1 AAGTCTCTAGGGTCAAAGCT-GACAGGCAGACTAAAGGTAAAG
* * * * * * *
6988556 AAGACTCCAAGGTCAATGCCGATAGGAAGACTAAAGGTGAAA-
1 AAGTCTCTAGGGTCAAAGCTGACAGGCAGACTAAAGGT-AAAG
* **
6988598 AAGTCTCTAGGGTCAAAGCTGATAGTAAGACTAAAGGTAAAG
1 AAGTCTCTAGGGTCAAAGCTGACAGGCAGACTAAAGGTAAAG
*
6988640 AAGTCT-TCAGGGTCAAAAG-TCGACAAGCAGACTAAAGGTTAAA-
1 AAGTCTCT-AGGGTC-AAAGCT-GACAGGCAGACTAAAGG-TAAAG
* * *
6988683 AAGTCTTTAGGGTCAAAGCCGACTAGGCAGACTAAAGGTAAAA
1 AAGTCTCTAGGGTCAAAGCTGAC-AGGCAGACTAAAGGTAAAG
*
6988726 AAGTCTCTATGGTCAAA
1 AAGTCTCTAGGGTCAAA
6988743 ATCGATAGAT
Statistics
Matches: 644, Mismatches: 145, Indels: 107
0.72 0.16 0.12
Matches are distributed among these distances:
30 3 0.00
31 4 0.01
32 11 0.02
33 4 0.01
34 1 0.00
35 1 0.00
36 2 0.00
37 8 0.01
38 4 0.01
39 4 0.01
40 6 0.01
41 66 0.10
42 452 0.70
43 73 0.11
44 5 0.01
ACGTcount: A:0.41, C:0.15, G:0.25, T:0.19
Consensus pattern (42 bp):
AAGTCTCTAGGGTCAAAGCTGACAGGCAGACTAAAGGTAAAG
Found at i:6988019 original size:193 final size:193
Alignment explanation
Indices: 6987669--6988020 Score: 411
Period size: 193 Copynumber: 1.8 Consensus size: 193
6987659 GTTAGGAAGA
* * * *
6987669 CTCTAGGGTCAAAGCCGATAGGAAGACAAAAAGTGAAGAAGTCTCTAGGGTCAAAGCCGATAGGT
1 CTCTAGGGTCAAAGCCGATAGGAAGACAAAAAGTAAAGAAGTCTCTAGGGTCAAAGCCAACAAGT
* * * * * * * * *
6987734 AAATTAAAGGTTAGGAAGTCTCTAGGGTTAAAGTCGATAAGCAGACTAAAGGTTAAAAAGTCTCC
66 AAACTAAAGGTTAGAAAGTCTCTAAGGTCAAAATCGACAAGCAGACTAAACGTCAAAAAGTCTCA
* *
6987799 AGTGCCAAAGCCGATAAGCAGACTAAAGGTAAGGAACTTAGAAGGTTAAAGCCGAAAAAAAGT
131 AGTGCCAAAGCCGATAAGAACACTAAAGGTAAGGAACTTAGAAGGTTAAAGCCGAAAAAAAGT
* * ** ** *
6987862 CTCTAGGGTCAAAGCTGATAGGCAGATGAAGGGTAAAGAAGTCTCTAGGGTCAAAGCTAACAAGT
1 CTCTAGGGTCAAAGCCGATAGGAAGACAAAAAGTAAAGAAGTCTCTAGGGTCAAAGCCAACAAGT
* * * *
6987927 AGACTAAAGG-TACGAAAGTTTCTAAGGTCAAAATTGACAAGCAGACTAAACGTCAAGAAGTCTC
66 AAACTAAAGGTTA-GAAAGTCTCTAAGGTCAAAATCGACAAGCAGACTAAACGTCAAAAAGTCTC
* * *
6987991 TAAG-GTCAAAGTCGATAGGAACACTAAAGG
130 -AAGTGCCAAAGCCGATAAGAACACTAAAGG
6988021 AGAAGAAGTC
Statistics
Matches: 128, Mismatches: 29, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
192 2 0.02
193 124 0.97
194 2 0.02
ACGTcount: A:0.40, C:0.15, G:0.26, T:0.19
Consensus pattern (193 bp):
CTCTAGGGTCAAAGCCGATAGGAAGACAAAAAGTAAAGAAGTCTCTAGGGTCAAAGCCAACAAGT
AAACTAAAGGTTAGAAAGTCTCTAAGGTCAAAATCGACAAGCAGACTAAACGTCAAAAAGTCTCA
AGTGCCAAAGCCGATAAGAACACTAAAGGTAAGGAACTTAGAAGGTTAAAGCCGAAAAAAAGT
Found at i:6988175 original size:67 final size:68
Alignment explanation
Indices: 6988067--6988198 Score: 203
Period size: 67 Copynumber: 1.9 Consensus size: 68
6988057 TAAGAGTAAG
*
6988067 GAAGTCTCTAGAGTCAAAGCTGACAGCCAAACTAAAGGT-AAGAAAGTTAGAAGGTCAAAGCCGA
1 GAAGTCTCTAGAGTCAAAGCTGACAGCCAAACTAAAGGTAAAGAAAGGTAGAAGGTCAAAGCCGA
6988131 AAA
66 AAA
* * *
6988134 GAAGTCTCTAGGGTTAAAGCTGACAGGCAAACTAAAGGTAAGAAGAAAGGTAGAAGGTCAAAGCC
1 GAAGTCTCTAGAGTCAAAGCTGACAGCCAAACTAAAGGT-A-AAGAAAGGTAGAAGGTCAAAGCC
6988199 AACAGGCAGA
Statistics
Matches: 58, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
67 36 0.62
70 22 0.38
ACGTcount: A:0.43, C:0.15, G:0.27, T:0.15
Consensus pattern (68 bp):
GAAGTCTCTAGAGTCAAAGCTGACAGCCAAACTAAAGGTAAAGAAAGGTAGAAGGTCAAAGCCGA
AAA
Found at i:6988479 original size:168 final size:166
Alignment explanation
Indices: 6988288--6988732 Score: 448
Period size: 168 Copynumber: 2.6 Consensus size: 166
6988278 AAACCGACAA
* * * * *
6988288 GCAGATTAAAAGTTAAGAAGTCTCTAGGGTCAAAGTCGATAGGAAGACTAAAAG-TAAGGAAGTC
1 GCAGACTAAAGGTTAAGAAGTCTCTAGGGTCAAAGTCGACAGGCAGACTAAAGGTTAA-GAAGTC
* * ** *
6988352 CTTAGGATCAAAGCCGACAAGCAGACTAAAGGTAAGGAAGTCTCCAAGATGAAAGCTTACAAGTA
65 TTTAGG-TCAAAGCCGACAAGCAGACTAAAGGTAA-GAAGTCTCCAAGATCAAAGCCGACAAGAA
* ** * *
6988417 GACTAAAGGTTAGGAAGT-TTTCAAGGTGAAAGCTGATAG
128 GACTAAAGGTGAAAAAGTCTCT-AAGGTCAAAGCTGATAG
* * *
6988456 GCAGACTAAAGGTT-AGAAAGTCTCTAAGGTCAAAGTCGACAGGCATAATAAAGGTTAAGAAGTC
1 GCAGACTAAAGGTTAAG-AAGTCTCTAGGGTCAAAGTCGACAGGCAGACTAAAGGTTAAGAAGTC
* * * * * * * * *
6988520 TTTAAGGTCAAAGTCAACAAGCAAACTAAAGTTAAGAAGACTCCAAGGTCAATGCCGATAGGAAG
65 TTT-AGGTCAAAGCCGACAAGCAGACTAAAGGTAAGAAGTCTCCAAGATCAAAGCCGACAAGAAG
*
6988585 ACTAAAGGTGAAAAAGTCTCTAGGGTCAAAGCTGATAG
129 ACTAAAGGTGAAAAAGTCTCTAAGGTCAAAGCTGATAG
** * * *
6988623 TAAGACTAAAGGTAAAGAAGTCT-TCAGGGTCAAAAGTCGACAAGCAGACTAAAGGTTAAAAAGT
1 GCAGACTAAAGGTTAAGAAGTCTCT-AGGGTC-AAAGTCGACAGGCAGACTAAAGGTTAAGAAGT
* *
6988687 CTTTAGGGTCAAAGCCGACTAGGCAGACTAAAGGTAAAAAAGTCTC
64 CTTTA-GGTCAAAGCCGAC-AAGCAGACTAAAGGT-AAGAAGTCTC
6988733 TATGGTCAAA
Statistics
Matches: 224, Mismatches: 43, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
166 1 0.00
167 75 0.33
168 122 0.54
169 18 0.08
170 8 0.04
ACGTcount: A:0.41, C:0.14, G:0.25, T:0.20
Consensus pattern (166 bp):
GCAGACTAAAGGTTAAGAAGTCTCTAGGGTCAAAGTCGACAGGCAGACTAAAGGTTAAGAAGTCT
TTAGGTCAAAGCCGACAAGCAGACTAAAGGTAAGAAGTCTCCAAGATCAAAGCCGACAAGAAGAC
TAAAGGTGAAAAAGTCTCTAAGGTCAAAGCTGATAG
Found at i:6988759 original size:42 final size:42
Alignment explanation
Indices: 6988585--6988765 Score: 154
Period size: 43 Copynumber: 4.3 Consensus size: 42
6988575 CGATAGGAAG
* * *
6988585 ACTAAAGGTGAAAAAGTCTCTAGGGTC-AAAGCTGATAGTA-AG
1 ACTAAAGGTAAAAAAGTCTCTAGGGTCAAAATC-GATAG-ACAA
* * *
6988627 ACTAAAGGTAAAGAAGTCT-TCAGGGTCAAAAGTCGACA-AGCAG
1 ACTAAAGGTAAAAAAGTCTCT-AGGGTCAAAA-TCGATAGA-CAA
* * ** * *
6988670 ACTAAAGGTTAAAAAGTCTTTAGGGTCAAAGCCGACTAGGCAG
1 ACTAAAGGTAAAAAAGTCTCTAGGGTCAAAATCGA-TAGACAA
* *
6988713 ACTAAAGGTAAAAAAGTCTCTATGGTCAAAATCGATAGATAA
1 ACTAAAGGTAAAAAAGTCTCTAGGGTCAAAATCGATAGACAA
6988755 ACTAAAGGTAA
1 ACTAAAGGTAA
6988766 TGAAGTTAGA
Statistics
Matches: 113, Mismatches: 18, Indels: 16
0.77 0.12 0.11
Matches are distributed among these distances:
41 2 0.02
42 41 0.36
43 68 0.60
44 2 0.02
ACGTcount: A:0.43, C:0.14, G:0.23, T:0.20
Consensus pattern (42 bp):
ACTAAAGGTAAAAAAGTCTCTAGGGTCAAAATCGATAGACAA
Found at i:6988851 original size:42 final size:42
Alignment explanation
Indices: 6988805--6988895 Score: 105
Period size: 42 Copynumber: 2.2 Consensus size: 42
6988795 GTCTTCAAGA
* *
6988805 TCAAAGCCGACAAGCAA-AC-AAAGGGTAAAAAAGTCTCTAGGG
1 TCAAAGCCGA-AAGAAAGACTAAA-GGTAAAAAAATCTCTAGGG
* * *
6988847 TCAAAGTCGATAGAAAGACTAAAGGTAAAAAAATCTTTAGGG
1 TCAAAGCCGAAAGAAAGACTAAAGGTAAAAAAATCTCTAGGG
6988889 TCAAAGC
1 TCAAAGC
6988896 TGATAAGTAG
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
41 4 0.10
42 34 0.83
43 3 0.07
ACGTcount: A:0.46, C:0.15, G:0.22, T:0.16
Consensus pattern (42 bp):
TCAAAGCCGAAAGAAAGACTAAAGGTAAAAAAATCTCTAGGG
Found at i:6988908 original size:42 final size:41
Alignment explanation
Indices: 6988828--6988978 Score: 142
Period size: 42 Copynumber: 3.6 Consensus size: 41
6988818 GCAAACAAAG
*
6988828 GGTAAAAAAGTCTCTAGGGTCAAAGTCGAT-AGAAAGACTAAA
1 GGTAAAAAAGTCTCTAGGGTCAAAGT-GATAAG-TAGACTAAA
* *
6988870 GGTAAAAAAATCTTTAGGGTCAAAGCTGATAAGTAGACTAAA
1 GGTAAAAAAGTCTCTAGGGTCAAAG-TGATAAGTAGACTAAA
* * ** * * *
6988912 AGTTAGGAAGTCCCCAGGGTCAAAGTTGATAGGTAGACTAAA
1 GGTAAAAAAGTCTCTAGGGTCAAAG-TGATAAGTAGACTAAA
** *
6988954 GGTAAGGAAGTCTCTAAGGTCAAAG
1 GGTAAAAAAGTCTCTAGGGTCAAAG
6988979 CCTAACAGAC
Statistics
Matches: 89, Mismatches: 18, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
42 86 0.97
43 3 0.03
ACGTcount: A:0.41, C:0.12, G:0.26, T:0.21
Consensus pattern (41 bp):
GGTAAAAAAGTCTCTAGGGTCAAAGTGATAAGTAGACTAAA
Found at i:6989077 original size:236 final size:236
Alignment explanation
Indices: 6988595--6989147 Score: 605
Period size: 236 Copynumber: 2.3 Consensus size: 236
6988585 ACTAAAGGTG
* *
6988595 AAAAAGTCTCTAGGGTCAAAG-CTGATAGTAAGACTAAAGGTAAAGAAGTCTTCAGGGTCAAAAG
1 AAAAAGTCTCTAGGGTCAAAGTC-GATAGAAAGACTAAAGGTAAAGAAGTCTTTAGGGTC-AAAG
* ***
6988659 TCGACAAGCAGACTAAAGGTTAAAAAGTCTTTAGGGTCAAAGCCGACTAGGCAGACTAAAGGTAA
64 TCGACAAGCAGACTAAAAGTTAAAAAGTCCCCAGGGTCAAAGCCGACTAGGCAGACTAAAGGTAA
* * * * * ** *
6988724 AAAAGTCTCTATGGTCAAAATCGATAGATAAACTAAAGGTAATGAAGTTAGAAGGTCAAAGCCGA
129 AAAAGTCTCTAAGGTCAAAACCAACAGACAAACTAAAGGTAACAAAGTTAGAAGGTCAAAGCCAA
* ***
6988789 AAAGAAGTCTTCAAGATCAAAGCCGACAAGCAAACAAAGGGTA
194 AAAGAAGTCTACAAGATCAAAAAAGACAAGCAAACAAAGGGTA
* *
6988832 AAAAAGTCTCTAGGGTCAAAGTCGATAGAAAGACTAAAGGTAAAAAAATCTTTAGGGTCAAAG-C
1 AAAAAGTCTCTAGGGTCAAAGTCGATAGAAAGACTAAAGGTAAAGAAGTCTTTAGGGTCAAAGTC
* * ** ** * *
6988896 TGATAAGTAGACTAAAAGTTAGGAAGTCCCCAGGGTCAAAGTTGA-TAGGTAGACTAAAGGTAAG
66 -GACAAGCAGACTAAAAGTTAAAAAGTCCCCAGGGTCAAAGCCGACTAGGCAGACTAAAGGTAAA
* * * *
6988960 GAAGTCTCTAAGGTCAAAGCCTAACAGACAGACTACAGGTAACAAAGTTAGAAGGTCAAAGCCAA
130 AAAGTCTCTAAGGTCAAAACC-AACAGACAAACTAAAGGTAACAAAGTTAGAAGGTCAAAGCCAA
* * * * **
6989025 AAAGAAGTCTACATGGTTAAAAAAGACTAGGCAAACGGAGGGT-
194 AAAGAAGTCTACAAGATCAAAAAAGAC-AAGCAAACAAAGGGTA
* * * * **
6989068 AAGAAGTCTCAAGAGTCAAAATCGATAGGCAGACTAAAGGTAAAGAAGT-TTCTAGGGTCAAAGT
1 AAAAAGTCTCTAGGGTCAAAGTCGATAGAAAGACTAAAGGTAAAGAAGTCTT-TAGGGTCAAAGT
6989132 CGAC-AGACAGACTAAA
65 CGACAAG-CAGACTAAA
6989148 GGTTTGAAAG
Statistics
Matches: 261, Mismatches: 48, Indels: 15
0.81 0.15 0.05
Matches are distributed among these distances:
235 39 0.15
236 155 0.59
237 66 0.25
238 1 0.00
ACGTcount: A:0.43, C:0.14, G:0.24, T:0.18
Consensus pattern (236 bp):
AAAAAGTCTCTAGGGTCAAAGTCGATAGAAAGACTAAAGGTAAAGAAGTCTTTAGGGTCAAAGTC
GACAAGCAGACTAAAAGTTAAAAAGTCCCCAGGGTCAAAGCCGACTAGGCAGACTAAAGGTAAAA
AAGTCTCTAAGGTCAAAACCAACAGACAAACTAAAGGTAACAAAGTTAGAAGGTCAAAGCCAAAA
AGAAGTCTACAAGATCAAAAAAGACAAGCAAACAAAGGGTA
Found at i:6989114 original size:42 final size:42
Alignment explanation
Indices: 6989068--6989150 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 42
6989058 AACGGAGGGT
* *
6989068 AAGAAGTCTCAAGAGTCAAAATCGATAGGCAGACTAAAGGTA
1 AAGAAGTCTCAAGAGTCAAAATCGACAGACAGACTAAAGGTA
* * * *
6989110 AAGAAGTTTCTAGGGTCAAAGTCGACAGACAGACTAAAGGT
1 AAGAAGTCTCAAGAGTCAAAATCGACAGACAGACTAAAGGT
6989151 TTGAAAGTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.42, C:0.14, G:0.25, T:0.18
Consensus pattern (42 bp):
AAGAAGTCTCAAGAGTCAAAATCGACAGACAGACTAAAGGTA
Found at i:6989336 original size:44 final size:43
Alignment explanation
Indices: 6989279--6989584 Score: 227
Period size: 44 Copynumber: 7.1 Consensus size: 43
6989269 TTTGAACACA
* *
6989279 GTGGTAACTATACGTCAAATCATAATGAAAAGAATTTGACTAGG
1 GTGGTAACCATACGTCAAATCA-AATGAAAAGAATTTGACTAAG
*
6989323 GTGGTAACCATACGTCAAA-C-AA-GAAAGAGGCAGATTTGACCAAG
1 GTGGTAACCATACGTCAAATCAAATGAAA-A-G-A-ATTTGACTAAG
* * * * *
6989367 GTGGTAACTATACGTCAAATTGAATTGAAAAGAATCTGACCAAG
1 GTGGTAACCATACGTCAAA-TCAAATGAAAAGAATTTGACTAAG
* * ** *
6989411 GTGGTAACCATACATCAAAT-AGA-G-GCAG-ATTTGACCT-GG
1 GTGGTAACCATACGTCAAATCAAATGAAAAGAATTTGA-CTAAG
* * * *
6989450 GTGGTAACCATACATCAAATCAGAATGAAAA-AATCTGCCCAAG
1 GTGGTAACCATACGTCAAATCA-AATGAAAAGAATTTGACTAAG
* * * *
6989493 GTGGTAACCATATGTCAGACCGAAATGAGAAA-AGTTTGACTAAG
1 GTGGTAACCATACGTCAAATC-AAATGA-AAAGAATTTGACTAAG
* * *
6989537 GTGGTAACCATACGTCAAATTGAAATGAAAAGAATTTAACTAGG
1 GTGGTAACCATACGTCAAA-TCAAATGAAAAGAATTTGACTAAG
6989581 GTGG
1 GTGG
6989585 AAGAGTTTGA
Statistics
Matches: 205, Mismatches: 38, Indels: 38
0.73 0.14 0.14
Matches are distributed among these distances:
39 26 0.13
40 8 0.04
41 5 0.02
42 4 0.02
43 34 0.17
44 120 0.59
45 1 0.00
46 1 0.00
47 2 0.01
48 4 0.02
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.23
Consensus pattern (43 bp):
GTGGTAACCATACGTCAAATCAAATGAAAAGAATTTGACTAAG
Found at i:6989418 original size:88 final size:87
Alignment explanation
Indices: 6989279--6989571 Score: 300
Period size: 88 Copynumber: 3.4 Consensus size: 87
6989269 TTTGAACACA
* * * *
6989279 GTGGTAACTATACGTCAAATCAT-AATGAAAAGAATTTGACTAGGGTGGTAACCATACGTCAAAC
1 GTGGTAACCATACGTCAAATC-TGAATGAAAAGAATCTGACCAAGGTGGTAACCATA-GTCAAAC
6989343 AAGAAAGAGGCAGATTTGACCAAG
64 AAGAAAGAGGCAGATTTGACCAAG
* *
6989367 GTGGTAACTATACGTCAAAT-TGAATTGAAAAGAATCTGACCAAGGTGGTAACCATA--C-ATCA
1 GTGGTAACCATACGTCAAATCTGAA-TGAAAAGAATCTGACCAAGGTGGTAACCATAGTCAAACA
* **
6989428 A-ATAGAGGCAGATTTGACCTGG
65 AGAAAGAGGCAGATTTGACCAAG
* * * *
6989450 GTGGTAACCATACATCAAATCAGAATGAAAA-AATCTGCCCAAGGTGGTAACCATATGTCAGAC-
1 GTGGTAACCATACGTCAAATCTGAATGAAAAGAATCTGACCAAGGTGGTAACCATA-GTCAAACA
* * * *
6989513 CGAAATGA-GAAAAGTTTGACTAAG
65 AGAAA-GAGGCAGA-TTTGACCAAG
6989537 GTGGTAACCATACGTCAAAT-TGAAATGAAAAGAAT
1 GTGGTAACCATACGTCAAATCTG-AATGAAAAGAAT
6989572 TTAACTAGGG
Statistics
Matches: 171, Mismatches: 22, Indels: 24
0.79 0.10 0.11
Matches are distributed among these distances:
82 23 0.13
83 42 0.25
84 7 0.04
85 2 0.01
86 8 0.05
87 38 0.22
88 51 0.30
ACGTcount: A:0.41, C:0.15, G:0.22, T:0.22
Consensus pattern (87 bp):
GTGGTAACCATACGTCAAATCTGAATGAAAAGAATCTGACCAAGGTGGTAACCATAGTCAAACAA
GAAAGAGGCAGATTTGACCAAG
Found at i:6989886 original size:90 final size:88
Alignment explanation
Indices: 6989745--6990013 Score: 297
Period size: 90 Copynumber: 3.0 Consensus size: 88
6989735 CATCAGTACT
* * * *
6989745 ATCTAGTGGTT-GGATAAAGGAGATATGATTAAGAATCTGTGGGCTGTACCTTACCTCAAGGAAA
1 ATCTAATGGTTAGG-TAAAGGGGATATGATTAAGAATGTGTGGGCTGCACCTTACCTCAA-GAAA
* * * *
6989809 TAAAACTTTGTGATGCATCAATAGC
64 TCAAGCTTTGTGATGCATTAATACC
*** * *
6989834 ATCTAATGGTTAGGTAAAAGGGGATATGATTAAGAATGTGTGGGCTGCACCTTTGTTCTATGAGA
1 ATCTAATGGTTAGGT-AAAGGGGATATGATTAAGAATGTGTGGGCTGCACCTTACCTC-AAGAAA
6989899 TCAAGCTTTGTGATGCATTAATACC
64 TCAAGCTTTGTGATGCATTAATACC
* * * * ** * * *
6989924 ATCTAGTGGTTGGGTGAAGGGAATATGATTGGGAATGTGTGGGCTGCACCTTGCCCCAAGAAGTC
1 ATCTAATGGTTAGGTAAAGGGGATATGATTAAGAATGTGTGGGCTGCACCTTACCTCAAGAAATC
6989989 AAGCTTTGTGATGCATTAATACC
66 AAGCTTTGTGATGCATTAATACC
6990012 AT
1 AT
6990014 AAAGGGACTG
Statistics
Matches: 151, Mismatches: 26, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
88 30 0.20
89 45 0.30
90 75 0.50
91 1 0.01
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.30
Consensus pattern (88 bp):
ATCTAATGGTTAGGTAAAGGGGATATGATTAAGAATGTGTGGGCTGCACCTTACCTCAAGAAATC
AAGCTTTGTGATGCATTAATACC
Found at i:6990030 original size:88 final size:89
Alignment explanation
Indices: 6989851--6990052 Score: 248
Period size: 88 Copynumber: 2.3 Consensus size: 89
6989841 GGTTAGGTAA
** ** * *
6989851 AAGGGGATATGATTAAGAATGTGTGGGCTGCACCTTTGTTCTATGAGATCAAGCTTTGTGATGCA
1 AAGGGGATATGATTGGGAATGTGTGGGCTGCACCTTTGCCCCAAGAGATCAAGCTTTGTGATGCA
** * *
6989916 TTAATACCATCTAGTGGTTGGGTG
66 TTAATACCATAAAGTGGCTGAGTG
*
6989940 AAGGGAATATGATTGGGAATGTGTGGGCTGCACC-TTGCCCCAAGA-AGTCAAGCTTTGTGATGC
1 AAGGGGATATGATTGGGAATGTGTGGGCTGCACCTTTGCCCCAAGAGA-TCAAGCTTTGTGATGC
6990003 ATTAATACCATAAAG-GGACTGAGTG
65 ATTAATACCATAAAGTGG-CTGAGTG
*
6990028 AAGGGGATATGATTAGGAAATGTGT
1 AAGGGGATATGATT-GGGAATGTGT
6990053 TTTCCTTGAA
Statistics
Matches: 97, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
87 3 0.03
88 54 0.56
89 40 0.41
ACGTcount: A:0.28, C:0.12, G:0.30, T:0.29
Consensus pattern (89 bp):
AAGGGGATATGATTGGGAATGTGTGGGCTGCACCTTTGCCCCAAGAGATCAAGCTTTGTGATGCA
TTAATACCATAAAGTGGCTGAGTG
Found at i:6998024 original size:20 final size:20
Alignment explanation
Indices: 6997972--6998024 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
6997962 CTATTGTTCT
6997972 TTTTC-TTTGTTTCGATTAC
1 TTTTCATTTGTTTCGATTAC
* * *
6997991 TTTGCAGTAGTTTCGATTAC
1 TTTTCATTTGTTTCGATTAC
*
6998011 TTTTCATTTCTTTC
1 TTTTCATTTGTTTC
6998025 TTTGTTCTTC
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
19 4 0.15
20 22 0.85
ACGTcount: A:0.13, C:0.17, G:0.11, T:0.58
Consensus pattern (20 bp):
TTTTCATTTGTTTCGATTAC
Found at i:6998751 original size:19 final size:17
Alignment explanation
Indices: 6998723--6998785 Score: 53
Period size: 19 Copynumber: 3.7 Consensus size: 17
6998713 AAACAGAAAA
*
6998723 TGTATTGATACATAAGGGT
1 TGTATCGATACATAA--GT
6998742 TGTATCGATAC--AA--
1 TGTATCGATACATAAGT
6998755 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAG--T
6998774 TGTATCGATACA
1 TGTATCGATACA
6998786 ATGTATCGCT
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
13 11 0.30
15 2 0.05
17 2 0.05
19 22 0.59
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (17 bp):
TGTATCGATACATAAGT
Found at i:6998760 original size:13 final size:13
Alignment explanation
Indices: 6998742--6998766 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6998732 ACATAAGGGT
6998742 TGTATCGATACAA
1 TGTATCGATACAA
6998755 TGTATCGATACA
1 TGTATCGATACA
6998767 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:6998765 original size:32 final size:32
Alignment explanation
Indices: 6998721--6998793 Score: 119
Period size: 32 Copynumber: 2.3 Consensus size: 32
6998711 ACAAACAGAA
*
6998721 AATGTATTGATACATAAGGGTTGTATCGATAC
1 AATGTATCGATACATAAGGGTTGTATCGATAC
**
6998753 AATGTATCGATACATAAGTTTTGTATCGATAC
1 AATGTATCGATACATAAGGGTTGTATCGATAC
6998785 AATGTATCG
1 AATGTATCG
6998794 CTACGAAGCT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.36
Consensus pattern (32 bp):
AATGTATCGATACATAAGGGTTGTATCGATAC
Found at i:6998836 original size:21 final size:21
Alignment explanation
Indices: 6998810--6998872 Score: 117
Period size: 21 Copynumber: 3.0 Consensus size: 21
6998800 AGCTACTGCC
*
6998810 AAGGAAATGTATTGATACATT
1 AAGGAAATGTATCGATACATT
6998831 AAGGAAATGTATCGATACATT
1 AAGGAAATGTATCGATACATT
6998852 AAGGAAATGTATCGATACATT
1 AAGGAAATGTATCGATACATT
6998873 GTATCGATAC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.43, C:0.08, G:0.19, T:0.30
Consensus pattern (21 bp):
AAGGAAATGTATCGATACATT
Found at i:6998877 original size:13 final size:13
Alignment explanation
Indices: 6998859--6998884 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6998849 ATTAAGGAAA
6998859 TGTATCGATACAT
1 TGTATCGATACAT
6998872 TGTATCGATACAT
1 TGTATCGATACAT
6998885 CGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:7001309 original size:52 final size:52
Alignment explanation
Indices: 7001250--7001375 Score: 182
Period size: 52 Copynumber: 2.4 Consensus size: 52
7001240 CTTAATTGTT
* *
7001250 CATAATCGAGGATACTCCAACCCCGGTTTTATTTTC-AAAACACCAATTTTC
1 CATAATCGAGGATACTCCAACCCCGATTTTATTTCCAAAAACACCAATTTTC
* * *
7001301 CTTTAATCGAGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTT
1 C-ATAATCGAGGATACTCCAACCCCGATTTTATTTCCAAAAACACCAATTTTC
*
7001354 CACAATCGAGGATACTCCAACC
1 CATAATCGAGGATACTCCAACC
7001376 TCATTATTTC
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
51 1 0.02
52 49 0.75
53 15 0.23
ACGTcount: A:0.33, C:0.28, G:0.10, T:0.30
Consensus pattern (52 bp):
CATAATCGAGGATACTCCAACCCCGATTTTATTTCCAAAAACACCAATTTTC
Found at i:7001497 original size:79 final size:79
Alignment explanation
Indices: 7001391--7001776 Score: 411
Period size: 79 Copynumber: 4.9 Consensus size: 79
7001381 ATTTCATTGA
* ** * **
7001391 GGATACTCCAACCCCGTTACCTCCGAGGGGATACTCCAACTTCGGCTTTATTTCCAAAATATTAA
1 GGATACTTCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTTCCAAAATATTAA
7001456 TTTCTCATAATCGG
66 TTTCTCATAATCGG
* ** * * *
7001470 GGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATTTTATTTCTAAAACATCAA
1 GGATACTTCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTTCCAAAATATTAA
* * *
7001535 TTTTTTATAATCAG
66 TTTCTCATAATCGG
* * * * * ** * * *
7001549 GAATACTTTAATCCCGTTATTTCCAAGGGGATACTCCAACCCCGATTTTATTTCAAAAAACATCA
1 GGATACTTCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTTC-CAAAATATTA
* * * *
7001614 ATTTTTTAGAATTGG
65 ATTTCTCATAATCGG
* * *
7001629 GGATACTTCAACCTCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTA-TTCTTAAAATATTG
1 GGATACTTCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTTC-CAAAATATTA
*
7001693 ATTTCTCGTAATCGG
65 ATTTCTCATAATCGG
*
7001708 GGATACTTCAACCCCGTTA-TTTC--GGGGATACTCCAACCCCGGCTTTATCTCCAAAATATTAA
1 GGATACTTCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTTCCAAAATATT-A
7001770 ATTTCTC
65 ATTTCTC
7001777 GTCAGGGGAT
Statistics
Matches: 259, Mismatches: 45, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
76 32 0.12
77 9 0.03
78 4 0.02
79 151 0.58
80 63 0.24
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (79 bp):
GGATACTTCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTTCCAAAATATTAA
TTTCTCATAATCGG
Found at i:7001502 original size:107 final size:107
Alignment explanation
Indices: 7001311--7001513 Score: 257
Period size: 107 Copynumber: 1.9 Consensus size: 107
7001301 CTTTAATCGA
* *
7001311 GGATACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTCACAATCGAGGATACTCCAACC
1 GGATACTCCAACTCCGACTTTATTTCCAAAAACACCAATTTCTCACAATCGAGGATACTCCAACC
*
7001376 TCATTATTTCATTGAGGATACTCCAACCCCGTTACCTCCGAGG
66 CCATTATTTCA-TGAGGATACTCCAACCCCGTTACCTCCGAGG
* * * ** * *
7001419 GGATACTCCAACTTCGGCTTTATTTCC-AAAATATTAATTTCTCATAATCGGGGATACTCCAACC
1 GGATACTCCAACTCCGACTTTATTTCCAAAAACACCAATTTCTCACAATCGAGGATACTCCAACC
* *
7001483 CCGTTATTTTCGA-GGGGATACTCCAACCCCG
66 CCATTA-TTTC-ATGAGGATACTCCAACCCCG
7001514 ATTTTATTTC
Statistics
Matches: 81, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
107 52 0.64
108 28 0.35
109 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.30
Consensus pattern (107 bp):
GGATACTCCAACTCCGACTTTATTTCCAAAAACACCAATTTCTCACAATCGAGGATACTCCAACC
CCATTATTTCATGAGGATACTCCAACCCCGTTACCTCCGAGG
Found at i:7014147 original size:1 final size:1
Alignment explanation
Indices: 7014141--7014206 Score: 69
Period size: 1 Copynumber: 66.0 Consensus size: 1
7014131 CTTATCTTCT
* ** * * * *
7014141 AAAAAAAAAAACAAAAGCAAAAAAAAAAACAAAAAAAAAACAAAAAAAAACAAAAAAAAAACAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
7014206 A
1 A
7014207 CAAAGAAAAG
Statistics
Matches: 52, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 52 1.00
ACGTcount: A:0.89, C:0.09, G:0.02, T:0.00
Consensus pattern (1 bp):
A
Found at i:7014162 original size:12 final size:11
Alignment explanation
Indices: 7014141--7014206 Score: 91
Period size: 11 Copynumber: 6.1 Consensus size: 11
7014131 CTTATCTTCT
7014141 AAAAAAA-AAA
1 AAAAAAACAAA
* *
7014151 ACAAAAGCAAAA
1 AAAAAAAC-AAA
7014163 AAAAAAACAAA
1 AAAAAAACAAA
7014174 AAAAAAAC-AA
1 AAAAAAACAAA
7014184 AAAAAAACAAA
1 AAAAAAACAAA
7014195 AAAAAAACAAA
1 AAAAAAACAAA
7014206 A
1 A
7014207 CAAAGAAAAG
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
10 15 0.31
11 25 0.51
12 9 0.18
ACGTcount: A:0.89, C:0.09, G:0.02, T:0.00
Consensus pattern (11 bp):
AAAAAAACAAA
Found at i:7014224 original size:26 final size:22
Alignment explanation
Indices: 7014141--7014215 Score: 89
Period size: 21 Copynumber: 3.4 Consensus size: 22
7014131 CTTATCTTCT
* *
7014141 AAAAAAAAAAACAAAAGCAAAAA
1 AAAAAAAAAAA-AAAAACAAAAC
7014164 AAAAAACAAAAAAAAAACAAAA-
1 AAAAAA-AAAAAAAAAACAAAAC
*
7014186 AAAAACAAAAAAAAAACAAAAC
1 AAAAAAAAAAAAAAAACAAAAC
*
7014208 AAAGAAAA
1 AAAAAAAA
7014216 GAGAGAAAAG
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
21 15 0.33
22 11 0.24
23 15 0.33
24 5 0.11
ACGTcount: A:0.88, C:0.09, G:0.03, T:0.00
Consensus pattern (22 bp):
AAAAAAAAAAAAAAAACAAAAC
Found at i:7014224 original size:29 final size:25
Alignment explanation
Indices: 7014141--7014215 Score: 100
Period size: 25 Copynumber: 3.0 Consensus size: 25
7014131 CTTATCTTCT
7014141 AAAAAAAAAAACAAAAGC-AAAAAAA
1 AAAAAAAAAAACAAAA-CAAAAAAAA
*
7014166 AAAACAAAAAA-AAAACAAAAAAAA
1 AAAAAAAAAAACAAAACAAAAAAAA
*
7014190 ACAAAAAAAAAACAAAACAAAGAAAA
1 A-AAAAAAAAAACAAAACAAAAAAAA
7014216 GAGAGAAAAG
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
23 1 0.02
24 12 0.27
25 19 0.43
26 12 0.27
ACGTcount: A:0.88, C:0.09, G:0.03, T:0.00
Consensus pattern (25 bp):
AAAAAAAAAAACAAAACAAAAAAAA
Found at i:7015343 original size:94 final size:94
Alignment explanation
Indices: 7015218--7015473 Score: 345
Period size: 94 Copynumber: 2.7 Consensus size: 94
7015208 GATGCCTTTT
* *
7015218 CCTTTTAAAGCCTACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAAGACGCTCTCTCCTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGCTCTCTCCTT
*
7015283 TTGCCCTTTAGTCCTCAAAGAGCAGGACG
66 TTACCCTTTAGTCCTCAAAGAGCAGGACG
* * * *
7015312 CCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCTCCCTCATT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGCTCTCTCCTT
* * * * *
7015377 TCACCTTTTTGTCCTCAAAGAGTAGGATG
66 TTACCCTTTAGTCCTCAAAGAGCAGGACG
* * *
7015406 CCTTTTAAAGCCCACACAAGCTGGTGGCACCTT-TTAGTCCTCAAAGAGCAGGATGC-CTTCTCC
1 CCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCTCAAAGAGCAGGACGCTC-TCTCC
7015469 TTTTA
64 TTTTA
7015474 AAGCCCACAC
Statistics
Matches: 140, Mismatches: 20, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
93 1 0.01
94 136 0.97
95 3 0.02
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (94 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGCTCTCTCCTT
TTACCCTTTAGTCCTCAAAGAGCAGGACG
Found at i:7015462 original size:55 final size:55
Alignment explanation
Indices: 7015378--7015632 Score: 341
Period size: 55 Copynumber: 4.5 Consensus size: 55
7015368 TCCCTCATTT
* * * *
7015378 CACCTTTTTGTCCTCAAAGAGTAGGATGCCTTTTAAAGCCCACACAAGCTGGTGG
1 CACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGG
*
7015433 CACCTTTTAGTCCTCAAAGAGCAGGATGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGG
1 CACCTTTTAGTCCTCAAAGAGCAGGA------CGCCTTTTAAAGCCCACACAAGTTGGTGG
* * * *
7015494 CA-CTTCCTAGTCCTCAAAGAACAGGACGCCTTTCAAAGCCCACACGAGTTGGTGG
1 CACCTT-TTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGG
*
7015549 CACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGG
1 CACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGG
*
7015604 CACCTTCTAGTCCTCAAAGAGCAGGACGC
1 CACCTTTTAGTCCTCAAAGAGCAGGACGC
7015633 TCTCTCTTTT
Statistics
Matches: 175, Mismatches: 17, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
55 123 0.70
56 3 0.02
60 3 0.02
61 46 0.26
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (55 bp):
CACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGG
Found at i:7015644 original size:116 final size:112
Alignment explanation
Indices: 7015387--7015632 Score: 338
Period size: 116 Copynumber: 2.2 Consensus size: 112
7015377 TCACCTTTTT
** * *
7015387 GTCCTCAAAGAGTAGGATGCCTTTT-AAAGCCCACACAAGCTGGTGGCACCTTTTAGTCCTCAAA
1 GTCCTCAAAGAACAGGACGCCTTTTCAAAGCCCACACAAGCTGGTGGCACCTTTCAGTCCTCAAA
*
7015451 GAGCAGGATGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTA
66 GAGCAGGA-----TCGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTA
* *
7015503 GTCCTCAAAGAACAGGACGCC-TTTCAAAGCCCACACGAGTTGGTGGCACCTTTCAGTCCTCAAA
1 GTCCTCAAAGAACAGGACGCCTTTTCAAAGCCCACACAAGCTGGTGGCACCTTTCAGTCCTCAAA
7015567 GAGCAGGA-CGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-CTA
66 GAGCAGGATCGCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCTA
*
7015613 GTCCTCAAAGAGCAGGACGC
1 GTCCTCAAAGAACAGGACGC
7015633 TCTCTCTTTT
Statistics
Matches: 120, Mismatches: 8, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
110 52 0.43
111 3 0.03
115 3 0.03
116 62 0.52
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (112 bp):
GTCCTCAAAGAACAGGACGCCTTTTCAAAGCCCACACAAGCTGGTGGCACCTTTCAGTCCTCAAA
GAGCAGGATCGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTA
Found at i:7015718 original size:94 final size:95
Alignment explanation
Indices: 7015551--7015724 Score: 278
Period size: 94 Copynumber: 1.8 Consensus size: 95
7015541 GTTGGTGGCA
* * *
7015551 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTC
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTCCAGTC
*
7015616 CTCAAAGAGCAGGACGCTCTCTCTTTTCAC
66 CTCAAAGAGAAGGACGCTCTCTCTTTTCAC
* * *
7015646 CCTTT-AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACGCGAGTTGGTGTCACCCTCCAGTC
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTCCAGTC
7015710 CTCAAAGAGAAGGAC
66 CTCAAAGAGAAGGAC
7015725 ACCTTTTTCT
Statistics
Matches: 72, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
94 67 0.93
95 5 0.07
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.22
Consensus pattern (95 bp):
CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTCCAGTC
CTCAAAGAGAAGGACGCTCTCTCTTTTCAC
Found at i:7015938 original size:46 final size:44
Alignment explanation
Indices: 7015769--7015939 Score: 167
Period size: 42 Copynumber: 3.9 Consensus size: 44
7015759 GCACTTTGTA
* *
7015769 GTCCTCAAAGAGCAGGACTCGC-TTT-ATTTTCC-TCTTT-CTTTT
1 GTCCTCAAAGAGCAGGA--CGCATTTCATTTTCCTTTTTTCCCTTT
* * * *
7015811 GTCCTCAAAGAGCAAGATGCATTTCGTTTTCCTTTTCT-CCTTT
1 GTCCTCAAAGAGCAGGACGCATTTCATTTTCCTTTTTTCCCTTT
*
7015854 GTCCTCAAAGAGCAGGACGC-TCTTTA-TTTCCTTCTTTTCCCTTCT
1 GTCCTCAAAGAGCAGGACGCAT-TTCATTTTCCTT-TTTTCCCTT-T
*
7015899 AGTCCTCAAAGAGCAGGACACATTTCATTTTCCTTTTTTCC
1 -GTCCTCAAAGAGCAGGACGCATTTCATTTTCCTTTTTTCC
7015940 TTTTTGCTCG
Statistics
Matches: 106, Mismatches: 13, Indels: 16
0.79 0.10 0.12
Matches are distributed among these distances:
40 2 0.02
41 3 0.03
42 30 0.28
43 30 0.28
44 4 0.04
45 1 0.01
46 28 0.26
47 8 0.08
ACGTcount: A:0.19, C:0.27, G:0.13, T:0.40
Consensus pattern (44 bp):
GTCCTCAAAGAGCAGGACGCATTTCATTTTCCTTTTTTCCCTTT
Found at i:7015941 original size:89 final size:85
Alignment explanation
Indices: 7015769--7015942 Score: 224
Period size: 89 Copynumber: 2.0 Consensus size: 85
7015759 GCACTTTGTA
* * **
7015769 GTCCTCAAAGAGCAGGACTCGCTTTATTTTCCTCTTTCTTTTGTCCTCAAAGAGCAAGATGCATT
1 GTCCTCAAAGAGCAGGACGCGCTTTATTTTCCTCTTTCTTTAGTCCTCAAAGAGCAAGACACATT
*
7015834 TCGTTTTCCTTTTCTCCTTT
66 TCATTTTCCTTTTCTCCTTT
* *
7015854 GTCCTCAAAGAGCAGGACGCTCTTTA-TTTCCTTCTTTTCCCTTCTAGTCCTCAAAGAGCAGGAC
1 GTCCTCAAAGAGCAGGACGCGCTTTATTTTCC-TC-TTT--CTT-TAGTCCTCAAAGAGCAAGAC
*
7015918 ACATTTCATTTTCCTTTTTTCCTTT
61 ACATTTCATTTTCCTTTTCTCCTTT
7015943 TTGCTCGAAA
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
84 5 0.07
85 26 0.34
86 3 0.04
88 3 0.04
89 39 0.51
ACGTcount: A:0.18, C:0.27, G:0.13, T:0.41
Consensus pattern (85 bp):
GTCCTCAAAGAGCAGGACGCGCTTTATTTTCCTCTTTCTTTAGTCCTCAAAGAGCAAGACACATT
TCATTTTCCTTTTCTCCTTT
Found at i:7016723 original size:19 final size:19
Alignment explanation
Indices: 7016699--7016844 Score: 148
Period size: 19 Copynumber: 8.6 Consensus size: 19
7016689 AAACAAAAAA
7016699 TGTATCGATACATAAGGGT
1 TGTATCGATACATAAGGGT
7016718 TGTATCGATAC--AA----
1 TGTATCGATACATAAGGGT
7016731 TGTATCGATACATAAGGGT
1 TGTATCGATACATAAGGGT
7016750 TGTATCGATAC--AA----
1 TGTATCGATACATAAGGGT
7016763 TGTATCGATACATAAGGGT
1 TGTATCGATACATAAGGGT
7016782 TGTATCGATAC--AA----
1 TGTATCGATACATAAGGGT
7016795 TGTATCGATACATAAGGGT
1 TGTATCGATACATAAGGGT
**
7016814 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAGGGT
7016833 TGTATCGATACA
1 TGTATCGATACA
7016845 ATGTATCTCT
Statistics
Matches: 107, Mismatches: 2, Indels: 36
0.74 0.01 0.25
Matches are distributed among these distances:
13 33 0.31
15 6 0.06
17 6 0.06
19 62 0.58
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (19 bp):
TGTATCGATACATAAGGGT
Found at i:7016736 original size:13 final size:13
Alignment explanation
Indices: 7016718--7016806 Score: 70
Period size: 13 Copynumber: 5.9 Consensus size: 13
7016708 ACATAAGGGT
7016718 TGTATCGATACAA
1 TGTATCGATACAA
7016731 TGTATCGATACATAA
1 TGTATCGATAC--AA
7016746 GGGTTGTATCGATACAA
1 ----TGTATCGATACAA
7016763 TGTATCGATACATAA
1 TGTATCGATAC--AA
7016778 GGGTTGTATCGATACAA
1 ----TGTATCGATACAA
7016795 TGTATCGATACA
1 TGTATCGATACA
7016807 TAAGGGTTGT
Statistics
Matches: 64, Mismatches: 0, Indels: 24
0.73 0.00 0.27
Matches are distributed among these distances:
13 34 0.53
15 4 0.06
17 4 0.06
19 22 0.34
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:7016738 original size:32 final size:32
Alignment explanation
Indices: 7016697--7016825 Score: 258
Period size: 32 Copynumber: 4.0 Consensus size: 32
7016687 ACAAACAAAA
7016697 AATGTATCGATACATAAGGGTTGTATCGATAC
1 AATGTATCGATACATAAGGGTTGTATCGATAC
7016729 AATGTATCGATACATAAGGGTTGTATCGATAC
1 AATGTATCGATACATAAGGGTTGTATCGATAC
7016761 AATGTATCGATACATAAGGGTTGTATCGATAC
1 AATGTATCGATACATAAGGGTTGTATCGATAC
7016793 AATGTATCGATACATAAGGGTTGTATCGATAC
1 AATGTATCGATACATAAGGGTTGTATCGATAC
7016825 A
1 A
7016826 TAAGTTTTGT
Statistics
Matches: 97, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 97 1.00
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.31
Consensus pattern (32 bp):
AATGTATCGATACATAAGGGTTGTATCGATAC
Found at i:7016895 original size:21 final size:21
Alignment explanation
Indices: 7016869--7016910 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
7016859 AGCTACTGCC
7016869 AAGGAAATGTATCGATACATT
1 AAGGAAATGTATCGATACATT
7016890 AAGGAAATGTATCGATACATT
1 AAGGAAATGTATCGATACATT
7016911 GTATCGATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.10, G:0.19, T:0.29
Consensus pattern (21 bp):
AAGGAAATGTATCGATACATT
Found at i:7016915 original size:13 final size:13
Alignment explanation
Indices: 7016897--7016922 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7016887 ATTAAGGAAA
7016897 TGTATCGATACAT
1 TGTATCGATACAT
7016910 TGTATCGATACAT
1 TGTATCGATACAT
7016923 CGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:7019344 original size:52 final size:53
Alignment explanation
Indices: 7019278--7019409 Score: 150
Period size: 52 Copynumber: 2.5 Consensus size: 53
7019268 TAAGTTTCTC
* * *
7019278 AATTGTTCA-TAATCGAGGATACTCCAAGC-CCGGTTTTATTTTC-AAAACACC-
1 AATT-TTCACTAATCGAGGATACTCCAA-CTCCGATTTTATTTCCAAAAAAACCA
*
7019329 AATTTTC-CTTTAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAAAACCA
1 AATTTTCAC--TAATCGAGGATACTCCAACTCCGATTTTATTTCCAAAAAAACCA
7019383 AATTTTCAC-AATCGAGGATACTCCAAC
1 AATTTTCACTAATCGAGGATACTCCAAC
7019410 CTCATTATTT
Statistics
Matches: 69, Mismatches: 5, Indels: 13
0.79 0.06 0.15
Matches are distributed among these distances:
50 3 0.04
51 5 0.07
52 46 0.67
53 7 0.10
54 7 0.10
55 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.31
Consensus pattern (53 bp):
AATTTTCACTAATCGAGGATACTCCAACTCCGATTTTATTTCCAAAAAAACCA
Found at i:7019508 original size:79 final size:77
Alignment explanation
Indices: 7019346--7019654 Score: 305
Period size: 79 Copynumber: 3.9 Consensus size: 77
7019336 CTTTAATCGG
* * * * *
7019346 GGATACTCCAACTCCGATTTTATTTCCAAAAAAACCAAATTTTCACAATCGAGGATACTCCAACC
1 GGATACTCCAACCCCGATTTTATTTCC-AAAACACCAATTTTTCATAATCGGGGATACTCCAACC
* *
7019411 TCATTATTTCATCG-
65 CCGTTATTTCA--GA
** * ** *
7019425 GGATACTCCAACCCCGGCTTTATTTCCAAAATATTAATTTCTCATAATCGGGGATACTCCAACCC
1 GGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCATAATCGGGGATACTCCAACCC
7019490 CGTTATTTTCGAGA
66 CGTTA-TTTC-AGA
* ** * * * ** *
7019504 GGATACTCCAACCCCGGTTTTATTTTTAAAACATCAATTTTTCATAATCAGGAATACTTTAATCC
1 GGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCATAATCGGGGATACTCCAACCC
*
7019569 CGTTATTTCCAAA
66 CGTTATTT-CAGA
* *
7019582 GGGATACTCCAACCCCGATTTTATTTCAAAAAAACACCAATTTTTCAGAATCGGGGATACTCCAA
1 -GGATACTCCAACCCCGATTTTATTTC--CAAAACACCAATTTTTCATAATCGGGGATACTCCAA
7019647 CCCCGTTA
63 CCCCGTTA
7019655 ATCATCGGGG
Statistics
Matches: 189, Mismatches: 34, Indels: 12
0.80 0.14 0.05
Matches are distributed among these distances:
78 40 0.21
79 112 0.59
80 1 0.01
81 36 0.19
ACGTcount: A:0.32, C:0.26, G:0.11, T:0.31
Consensus pattern (77 bp):
GGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCATAATCGGGGATACTCCAACCC
CGTTATTTCAGA
Found at i:7019661 original size:27 final size:25
Alignment explanation
Indices: 7019631--7019705 Score: 96
Period size: 27 Copynumber: 2.8 Consensus size: 25
7019621 ATTTTTCAGA
7019631 ATCGGGGATACTCCAACCCCGTTAAT
1 ATCGGGGATACTCCAACCCCGTT-AT
*
7019657 CATCGGGGATACTCCAACTCCGTTAT
1 -ATCGGGGATACTCCAACCCCGTTAT
*
7019683 TTCCGAGGGATACTCCAACCCCG
1 AT-CG-GGGATACTCCAACCCCG
7019706 GTTTTATTCT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
25 1 0.02
26 4 0.09
27 38 0.88
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (25 bp):
ATCGGGGATACTCCAACCCCGTTAT
Found at i:7019754 original size:105 final size:106
Alignment explanation
Indices: 7019568--7019777 Score: 257
Period size: 105 Copynumber: 2.0 Consensus size: 106
7019558 TACTTTAATC
*
7019568 CCGTTATTTCCAAAGGGATACTCCAACCCCGATTTTATTTCAAAAAAACACCAATTTTTCAGAAT
1 CCGTTATTTCCAAAGGGATACTCCAACCCCGATTTTATTTCAAAAAAACACCAATTTCTCAGAAT
* *
7019633 CGGGGATACTCCAACCCCGTTAATCATCGGGGATACTCCAACT
66 CGGAGATACTCCAACCCCCTT-AT-ATCGGGGATACTCCAACT
* * ** * ***
7019676 CCGTTATTTCC-GAGGGATACTCCAACCCCGGTTTTA-TTC-TTAAAATATTGATTTCTC-GTAA
1 CCGTTATTTCCAAAGGGATACTCCAACCCCGATTTTATTTCAAAAAAACACCAATTTCTCAG-AA
*
7019737 TCGGAGATACTCCAACCCCCTTATTTCGGGGATACTCCAAC
65 TCGGAGATACTCCAACCCCCTTATATCGGGGATACTCCAAC
7019778 CCCGGCTTTA
Statistics
Matches: 89, Mismatches: 12, Indels: 7
0.82 0.11 0.06
Matches are distributed among these distances:
103 16 0.18
104 3 0.03
105 33 0.37
106 3 0.03
107 23 0.26
108 11 0.12
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.30
Consensus pattern (106 bp):
CCGTTATTTCCAAAGGGATACTCCAACCCCGATTTTATTTCAAAAAAACACCAATTTCTCAGAAT
CGGAGATACTCCAACCCCCTTATATCGGGGATACTCCAACT
Found at i:7019788 original size:76 final size:79
Alignment explanation
Indices: 7019658--7019811 Score: 217
Period size: 76 Copynumber: 2.0 Consensus size: 79
7019648 CCCGTTAATC
* * * * *
7019658 ATCGGGGATACTCCAACTCCGTTATTTCCGAGGGATACTCCAACCCCGGTTTTAT-TCTTAAAAT
1 ATCGGAGATACTCCAACCCCCTTATTTCCGAGGGATACTCCAACCCCGGCTTTATCTC-CAAAAT
*
7019722 ATT-GATTTCTCGTA
65 ATTAAATTTCTCGTA
7019736 ATCGGAGATACTCCAACCCCCTTATTT-CG-GGGATACTCCAACCCCGGCTTTATCTCCAAAATA
1 ATCGGAGATACTCCAACCCCCTTATTTCCGAGGGATACTCCAACCCCGGCTTTATCTCCAAAATA
7019799 TTAAATTTCTCGT
66 TTAAATTTCTCGT
7019812 CAGGGGATGT
Statistics
Matches: 68, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
76 31 0.46
77 13 0.19
78 24 0.35
ACGTcount: A:0.25, C:0.27, G:0.15, T:0.32
Consensus pattern (79 bp):
ATCGGAGATACTCCAACCCCCTTATTTCCGAGGGATACTCCAACCCCGGCTTTATCTCCAAAATA
TTAAATTTCTCGTA
Found at i:7020990 original size:13 final size:13
Alignment explanation
Indices: 7020972--7020997 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7020962 ACAATTTTTG
7020972 TGTATCGATACAT
1 TGTATCGATACAT
7020985 TGTATCGATACAT
1 TGTATCGATACAT
7020998 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:7020994 original size:32 final size:32
Alignment explanation
Indices: 7020953--7021015 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
7020943 TACAAACCAA
**
7020953 TGTATCGATACAATTTTTG-TGTATCGATACAT
1 TGTATCGATAC-ATACTTGCTGTATCGATACAT
7020985 TGTATCGATACATACTTGCTGTATCGATACA
1 TGTATCGATACATACTTGCTGTATCGATACA
7021016 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 5 0.18
32 23 0.82
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.40
Consensus pattern (32 bp):
TGTATCGATACATACTTGCTGTATCGATACAT
Found at i:7021081 original size:20 final size:20
Alignment explanation
Indices: 7021056--7021108 Score: 106
Period size: 20 Copynumber: 2.6 Consensus size: 20
7021046 ACATCTTTTT
7021056 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
7021076 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
7021096 CATGTATCGATAC
1 CATGTATCGATAC
7021109 TTTGAATTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (20 bp):
CATGTATCGATACATTGCAA
Found at i:7023394 original size:21 final size:21
Alignment explanation
Indices: 7023370--7023416 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
7023360 TTTAATGCTG
7023370 ATTTTG-A-TGAAAAACGAAGT
1 ATTTTGAAGTGAAAAAC-AAGT
7023390 -TATTTGAAGTGAAAAACAAGT
1 AT-TTTGAAGTGAAAAACAAGT
7023411 ATTTTG
1 ATTTTG
7023417 CAAAAGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
19 1 0.04
20 4 0.17
21 9 0.39
22 9 0.39
ACGTcount: A:0.43, C:0.04, G:0.19, T:0.34
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAACAAGT
Found at i:7023555 original size:13 final size:13
Alignment explanation
Indices: 7023537--7023575 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
7023527 ATAATCACCC
*
7023537 TGTATCGATACAG
1 TGTATCGATACAA
7023550 TGTATCGATACAA
1 TGTATCGATACAA
7023563 TGTATCGATACAA
1 TGTATCGATACAA
7023576 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:7023586 original size:20 final size:20
Alignment explanation
Indices: 7023561--7023639 Score: 77
Period size: 20 Copynumber: 3.7 Consensus size: 20
7023551 GTATCGATAC
7023561 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
7023581 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
* *
7023606 GATGTATCGATACACAGAAA
1 AATGTATCGATACAAAGAAA
*
7023626 CATGTATCGATACA
1 AATGTATCGATACA
7023640 TTTTGGACAT
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
20 32 0.64
25 18 0.36
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:7025684 original size:15 final size:15
Alignment explanation
Indices: 7025648--7025685 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
7025638 TTCATCAATT
* *
7025648 TCATTTGGAGCTTCT
1 TCATTTTGAGCTTCC
7025663 TCATTTTGAGCTTCC
1 TCATTTTGAGCTTCC
7025678 TCATTTTG
1 TCATTTTG
7025686 GACATTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.13, C:0.21, G:0.16, T:0.50
Consensus pattern (15 bp):
TCATTTTGAGCTTCC
Found at i:7027518 original size:21 final size:21
Alignment explanation
Indices: 7027489--7027533 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
7027479 AAGTTTTCAT
*
7027489 TTTTCTTAGCTAA-TTCATTA
1 TTTTCTTAGCCAACTTCATTA
*
7027509 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
7027531 TTT
1 TTT
7027534 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 7 0.33
22 9 0.43
ACGTcount: A:0.22, C:0.18, G:0.04, T:0.56
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:7029769 original size:13 final size:13
Alignment explanation
Indices: 7029751--7029776 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7029741 ACAATTTTTA
7029751 TGTATCGATACAT
1 TGTATCGATACAT
7029764 TGTATCGATACAT
1 TGTATCGATACAT
7029777 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:7032785 original size:18 final size:18
Alignment explanation
Indices: 7032762--7032797 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
7032752 GTTACCTATT
*
7032762 CTTCATTGTGCCCAACAA
1 CTTCATTATGCCCAACAA
7032780 CTTCATTATGCCCAACAA
1 CTTCATTATGCCCAACAA
7032798 TAACATTGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.33, G:0.08, T:0.28
Consensus pattern (18 bp):
CTTCATTATGCCCAACAA
Found at i:7034794 original size:18 final size:17
Alignment explanation
Indices: 7034767--7034801 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7034757 ATGATTATGA
*
7034767 TTTTAGAGTCTACTTTG
1 TTTTAGAGTCTAATTTG
7034784 TTTTAAGAGTCTAATTTG
1 TTTT-AGAGTCTAATTTG
7034802 AGATGTTGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.23, C:0.09, G:0.17, T:0.51
Consensus pattern (17 bp):
TTTTAGAGTCTAATTTG
Found at i:7042215 original size:14 final size:13
Alignment explanation
Indices: 7042141--7042216 Score: 55
Period size: 14 Copynumber: 5.6 Consensus size: 13
7042131 GGGTAAAAGC
*
7042141 AAAAAAAGAGAAA
1 AAAAAAAGAAAAA
* * *
7042154 CACAAGAGAAACAA
1 AAAAAAAGAAA-AA
7042168 AAATAAAA-AAAAGA
1 AAA-AAAAGAAAA-A
7042182 AAAAAAAGAAAAA
1 AAAAAAAGAAAAA
*
7042195 AACAAAAAGAATAA
1 AA-AAAAAGAAAAA
*
7042209 ATAAAAAG
1 AAAAAAAG
7042217 GGAACAACAA
Statistics
Matches: 49, Mismatches: 9, Indels: 10
0.72 0.13 0.15
Matches are distributed among these distances:
13 21 0.43
14 25 0.51
15 3 0.06
ACGTcount: A:0.80, C:0.05, G:0.11, T:0.04
Consensus pattern (13 bp):
AAAAAAAGAAAAA
Found at i:7043807 original size:61 final size:62
Alignment explanation
Indices: 7043477--7045037 Score: 1928
Period size: 62 Copynumber: 25.3 Consensus size: 62
7043467 CTTTTAGCCA
* * *
7043477 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTCAAAGCCTACACAAGTTGGTGGCACCC
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * *** * *
7043539 TTTAGTCCTTAAAGAGTAGGACATCTTTTTCTTTTCGAAGCCCACACGACTTGGTGGCACCC
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * **
7043601 TTTAATCCTCAAAGAGCAGGACGTTTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* *** * *
7043663 TTTTGTCCTCAAAGAGCAGGACATCTTTTCCTTTTCAAAGTCCACACGAGTTGGTGGCACCC
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
7043725 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTT-GTGGCACCC
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
*
7043786 TTTAGTCCTCAAAGAGCAGGATGCTTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* ** * *
7043848 TTTAGTACTCAAAGAGCAGGACACCTTTTT-TTTTCAAA-CCAACACGAGTTGATGGCACCC
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * * * * *
7043908 TGTAGTCCTCAAAGAGTAGGATGTCTTTTCCTTTTTC-AAGCTCACACGAGTTGGTGGCA-CA
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTC-TTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * * *
7043969 TTTAGTCCTCAAAGTGCATGACGCCTTTTT-TTTTC-AAGCCCACATGAGTTGGTGGCA-CC
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * * * *
7044028 TTTAGTCATTAAAGAGTAGGACT-CAC-TTTTCTTTTCAAAGCCCACACAAGTTGGTGGCA-TC
1 TTTAGTCCTCAAAGAGCAGGA-TGC-CTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * * **
7044089 TTTACTCCTCAAAGATCAGGATGCCTTTTTCCTTTT-AAAGCCCACAC-ACGTTGGTGGTATTC
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTT-CTTTTCAAAGCCCACACGA-GTTGGTGGCACCC
* * *
7044151 TTTAGCCCTCAAAGATCAGGATGCCTTTTT-TTTTCAATGCCCACACGAGTTGGTGGCACCC
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* **
7044212 TTTAGTCCTCAAAGAACAGGACACCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* **
7044274 TTTTGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCATTCGAGTTGGTGGCACCC
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * * * *
7044336 TTCAGTCCTCAAAGAGTAGGATGCCTTTTTCATTTCAAAGCCCATACGAGTTGGTGGCACCT
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * *
7044398 TTTATTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCTACATGAGTTGGTGGCACCC
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * * * *
7044460 TTTAGTCCTCAAAGAGCAGAACGTCTTTTCCTTTTTC-AAGCCCACACAAGTTGGTGGCA-CC
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTC-TTTTCAAAGCCCACACGAGTTGGTGGCACCC
* *
7044521 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTC-AAGCCCACATGAGTTGGTGG-AACC
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * ** *
7044581 TTTAGTCTTCAAAGAGCAACG-TGTATTTTTCTTTTCAAAGGCCACACGAGTTGGTGGCA-CC
1 TTTAGTCCTCAAAGAGC-AGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* *
7044642 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTC-AAGCCCATACGAGTTGGTGGCATCC
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * * * * * *
7044703 TTTTGTCCTCAAAAAGAAAGATGCCTTTTTCTTTTCAAAGCCCATACTAGTTGGTGGCACCA
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * *
7044765 TTTAGTCCTCAAAGAGCAAGATGCC-TTTTCTTTTCAAAGCCTACGCGAGTTGGTGGCA-CC
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * *
7044825 TCTTAGTCCTCAAAGAGCAGGATACCTTTTTTTTTTCAAAGCCTACACGAGTTGGTGGCACCC
1 T-TTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * * * *
7044888 TTTAGTTCTCAAAGAGCAGGACGCCTTTTCTTTTTTC-AAGCCCACATGAGTTGGTGGCACTC
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTT-TCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * *
7044950 TTTAGTCCTCAAAGAGCAGAGCAGGACACCTTTTTCTTTTCGAAGCCCATACGAGTTGGTGGCAC
1 TTTAGTCCTCAAAGAGCAG-G-ATG---CCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCAC
*
7045015 CT
61 CC
*
7045017 TTTAGTCTTCAAAGAGCAGGA
1 TTTAGTCCTCAAAGAGCAGGA
7045038 CATCTTTTCT
Statistics
Matches: 1303, Mismatches: 162, Indels: 65
0.85 0.11 0.04
Matches are distributed among these distances:
59 48 0.04
60 134 0.10
61 367 0.28
62 683 0.52
63 16 0.01
64 2 0.00
65 1 0.00
66 7 0.01
67 45 0.03
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (62 bp):
TTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
Found at i:7047662 original size:13 final size:13
Alignment explanation
Indices: 7047636--7047672 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
7047626 ATAGTGCCCT
*
7047636 TGTATCGATACAA
1 TGTATTGATACAA
*
7047649 TGTATTGATGCAA
1 TGTATTGATACAA
7047662 TGTATTGATAC
1 TGTATTGATAC
7047673 TAAGATCCTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (13 bp):
TGTATTGATACAA
Found at i:7048930 original size:50 final size:50
Alignment explanation
Indices: 7048855--7048999 Score: 184
Period size: 50 Copynumber: 2.9 Consensus size: 50
7048845 AAATTCAAAA
* *
7048855 TTTACCCAGAGGTATTGAGACATTCTTCATTGTATCGATACATTCTGGGT
1 TTTACCCAGATGTATTGATACATTCTTCATTGTATCGATACATTCTGGGT
* * * * *
7048905 TTTACCCAGATGTATCGATACATTCTTTATTGTATCGAAATATTTTGGGT
1 TTTACCCAGATGTATTGATACATTCTTCATTGTATCGATACATTCTGGGT
* * *
7048955 TTTACTCAGATGTATTGATACATT-TCTCAATATATCGATACATTC
1 TTTACCCAGATGTATTGATACATTCT-TCATTGTATCGATACATTC
7049000 AAGCATTTTT
Statistics
Matches: 79, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
49 1 0.01
50 78 0.99
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.41
Consensus pattern (50 bp):
TTTACCCAGATGTATTGATACATTCTTCATTGTATCGATACATTCTGGGT
Found at i:7051415 original size:79 final size:78
Alignment explanation
Indices: 7051299--7051757 Score: 439
Period size: 79 Copynumber: 5.8 Consensus size: 78
7051289 ATACTTTAAC
* * ** * *
7051299 CCCGTTATTTTCGCGGGGATACTTTAATCC-CGGTTTTATTT-TCAAAATATAGATTTTCCACCA
1 CCCGTTATTTTTGAGGGGATACTCCAA-CCTCGATTTTATTTCT-AAAACATAGATTTTCCACCA
* *
7051362 TCAAGGATACTCTAA
64 TCGAGGATACTCCAA
* * * * *
7051377 TCCCGTTATTTTTGAGGAGATACTCCAACCTCAATTTTATTTCTAAAACATCGACTTTCCATCAT
1 -CCCGTTATTTTTGAGGGGATACTCCAACCTCGATTTTATTTCTAAAACATAGATTTTCCACCAT
*
7051442 CGGGGATACTCCAA
65 CGAGGATACTCCAA
** * *
7051456 CCTCGTTATTTCCGAAGGGATACTCCAACCTCGATTTTATTTCTAAAACACT-GATTTTCTACCA
1 CC-CGTTATTTTTGAGGGGATACTCCAACCTCGATTTTATTTCTAAAACA-TAGATTTTCCACCA
7051520 TCGAGG--ACTCCAA
64 TCGAGGATACTCCAA
* * * * * * *
7051533 CCCCATTATGTTCGAGGGGATACTCCAACCTCGATTTTTATATCTAAAACATTGATTTTTCACAA
1 -CCCGTTATTTTTGAGGGGATACTCCAACCTCGA-TTTTATTTCTAAAACATAGATTTTCCACCA
*
7051598 TCGAGGATACTTCAA
64 TCGAGGATACTCCAA
* * * *
7051613 CCTCGTTATTTCTGAGGGGATGCTCCAACCTCG-TATTTATTTCTAAAACATCA-ATTTTTCACA
1 CC-CGTTATTTTTGAGGGGATACTCCAACCTCGAT-TTTATTTCTAAAACAT-AGATTTTCCACC
*
7051676 ATCGGGGATACTCCAA
63 ATCGAGGATACTCCAA
* * * *
7051692 CCCCATTATTTTTGAGGGGATACTCCAA-CTCCGATTTTATTTCCAAAACATTGATTTTTCACCA
1 -CCCGTTATTTTTGAGGGGATACTCCAACCT-CGATTTTATTTCTAAAACATAGATTTTCCACCA
7051756 TC
64 TC
7051758 AGGGAATGTA
Statistics
Matches: 317, Mismatches: 47, Indels: 32
0.80 0.12 0.08
Matches are distributed among these distances:
77 35 0.11
78 39 0.12
79 207 0.65
80 36 0.11
ACGTcount: A:0.27, C:0.24, G:0.13, T:0.35
Consensus pattern (78 bp):
CCCGTTATTTTTGAGGGGATACTCCAACCTCGATTTTATTTCTAAAACATAGATTTTCCACCATC
GAGGATACTCCAA
Found at i:7051623 original size:157 final size:156
Alignment explanation
Indices: 7051390--7051753 Score: 468
Period size: 157 Copynumber: 2.3 Consensus size: 156
7051380 CGTTATTTTT
* * * * * *
7051390 GAGGAGATACTCCAACCTCAATTTTATTTCTAAAACATCGACTTTCCATCATCGGGGATACTCCA
1 GAGGGGATACTCCAACCTCGATTTTATTTCTAAAACATTGATTTTTCA-CATCGAGGATACTCCA
*
7051455 ACCTCGTTATTTCCGAAGGGATACTCCAACCTCG-ATTTTATTTCTAAAACA-CTGA-TTTTCTA
65 ACCTCGTTATTTCCGAAGGGATACTCCAACCTCGTA-TTTATTTCTAAAACATC-AATTTTTC-A
*
7051517 CCATCGAGG-ACTCCAACCCCATTATGTTC
127 CAATCGAGGAACTCCAACCCCATTATGTTC
* *
7051546 GAGGGGATACTCCAACCTCGATTTTTATATCTAAAACATTGATTTTTCACAATCGAGGATACTTC
1 GAGGGGATACTCCAACCTCGA-TTTTATTTCTAAAACATTGATTTTTCAC-ATCGAGGATACTCC
* * *
7051611 AACCTCGTTATTTCTGAGGGGATGCTCCAACCTCGTATTTATTTCTAAAACATCAATTTTTCACA
64 AACCTCGTTATTTCCGAAGGGATACTCCAACCTCGTATTTATTTCTAAAACATCAATTTTTCACA
* * *
7051676 ATCGGGGATACTCCAACCCCATTATTTTT
129 ATCGAGGA-ACTCCAACCCCATTATGTTC
*
7051705 GAGGGGATACTCCAA-CTCCGATTTTATTTCCAAAACATTGATTTTTCAC
1 GAGGGGATACTCCAACCT-CGATTTTATTTCTAAAACATTGATTTTTCAC
7051754 CATCAGGGAA
Statistics
Matches: 182, Mismatches: 18, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
156 20 0.11
157 91 0.50
158 35 0.19
159 36 0.20
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.34
Consensus pattern (156 bp):
GAGGGGATACTCCAACCTCGATTTTATTTCTAAAACATTGATTTTTCACATCGAGGATACTCCAA
CCTCGTTATTTCCGAAGGGATACTCCAACCTCGTATTTATTTCTAAAACATCAATTTTTCACAAT
CGAGGAACTCCAACCCCATTATGTTC
Found at i:7056250 original size:17 final size:17
Alignment explanation
Indices: 7056228--7056266 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
7056218 TTGATATTTG
*
7056228 TCCTTCTTGCTCGATTC
1 TCCTTCTTGCTCGAGTC
*
7056245 TCCTTCTTTCTCGAGTC
1 TCCTTCTTGCTCGAGTC
7056262 TCCTT
1 TCCTT
7056267 TTACCATGGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.05, C:0.36, G:0.10, T:0.49
Consensus pattern (17 bp):
TCCTTCTTGCTCGAGTC
Found at i:7056370 original size:3 final size:3
Alignment explanation
Indices: 7056362--7056396 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
7056352 TGAGTCTACT
* *
7056362 TCA TCA TCA TCA TCA TCA TCA TTA TCT TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
7056397 TTTGATGGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.29, C:0.31, G:0.00, T:0.40
Consensus pattern (3 bp):
TCA
Found at i:7056397 original size:9 final size:9
Alignment explanation
Indices: 7056360--7056398 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
7056350 TCTGAGTCTA
7056360 CTTCATCAT
1 CTTCATCAT
*
7056369 CATCATCAT
1 CTTCATCAT
* *
7056378 CATCATTAT
1 CTTCATCAT
7056387 CTTCATCAT
1 CTTCATCAT
7056396 CTT
1 CTT
7056399 TGATGGTTGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.26, C:0.31, G:0.00, T:0.44
Consensus pattern (9 bp):
CTTCATCAT
Found at i:7063854 original size:9 final size:9
Alignment explanation
Indices: 7063832--7063865 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
7063822 TCCAAACATG
*
7063832 AATACTCTAG
1 AATA-TCTAA
7063842 AATATCTAA
1 AATATCTAA
7063851 AATATCTAA
1 AATATCTAA
7063860 AATATC
1 AATATC
7063866 ATCAAATCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 19 0.83
10 4 0.17
ACGTcount: A:0.50, C:0.15, G:0.03, T:0.32
Consensus pattern (9 bp):
AATATCTAA
Found at i:7064117 original size:9 final size:9
Alignment explanation
Indices: 7064095--7064128 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
7064085 GAAAAAAATG
*
7064095 AATACTCTAG
1 AATA-TCTAA
7064105 AATATCTAA
1 AATATCTAA
7064114 AATATCTAA
1 AATATCTAA
7064123 AATATC
1 AATATC
7064129 ATGTGTATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 19 0.83
10 4 0.17
ACGTcount: A:0.50, C:0.15, G:0.03, T:0.32
Consensus pattern (9 bp):
AATATCTAA
Found at i:7065455 original size:14 final size:15
Alignment explanation
Indices: 7065401--7065455 Score: 51
Period size: 17 Copynumber: 3.7 Consensus size: 15
7065391 TTTTTTTAAA
*
7065401 TTTTGTTTTTGCTTTGT
1 TTTTGATTTT-CTTT-T
*
7065418 TTTTGGTTTTCTTTT
1 TTTTGATTTTCTTTT
*
7065433 TTTT-CTTTT-TTTT
1 TTTTGATTTTCTTTT
7065446 TTTTGATTTT
1 TTTTGATTTT
7065456 ATGCTTTTGC
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
13 8 0.24
14 8 0.24
15 5 0.15
16 4 0.12
17 9 0.26
ACGTcount: A:0.02, C:0.05, G:0.11, T:0.82
Consensus pattern (15 bp):
TTTTGATTTTCTTTT
Found at i:7068637 original size:20 final size:20
Alignment explanation
Indices: 7068583--7068658 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
7068573 AAAACCCTTA
**
7068583 AATGTATCGATACACAATTC
1 AATGTATCGATACATGATTC
* *
7068603 AAAGTATCGATACATGTTTC
1 AATGTATCGATACATGATTC
***
7068623 AATGTATCGATACATGAAAA
1 AATGTATCGATACATGATTC
7068643 AGATGTATCGATACAT
1 A-ATGTATCGATACAT
7068659 TTCTTGGCAG
Statistics
Matches: 46, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
20 32 0.70
21 14 0.30
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.30
Consensus pattern (20 bp):
AATGTATCGATACATGATTC
Found at i:7068715 original size:13 final size:13
Alignment explanation
Indices: 7068697--7068722 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7068687 TACAGCAAGT
7068697 ATGTATCGATACA
1 ATGTATCGATACA
7068710 ATGTATCGATACA
1 ATGTATCGATACA
7068723 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:7072808 original size:15 final size:15
Alignment explanation
Indices: 7072788--7072819 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7072778 ATAAAAATGT
*
7072788 TCAAAATGAGGAAGC
1 TCAAAATGAAGAAGC
7072803 TCAAAATGAAGAAGC
1 TCAAAATGAAGAAGC
7072818 TC
1 TC
7072820 CAAACGAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.16, G:0.22, T:0.16
Consensus pattern (15 bp):
TCAAAATGAAGAAGC
Found at i:7074912 original size:20 final size:20
Alignment explanation
Indices: 7074834--7074945 Score: 94
Period size: 20 Copynumber: 5.7 Consensus size: 20
7074824 ATGTCCAAAA
* *
7074834 TGTATCGATACATGTTTCTG
1 TGTATCGATACATTTTTCTT
* *
7074854 TGTATCGATACATCTAGAAATTCTA
1 TGTATCGATACAT-T----TTTCTT
7074879 TGTATCGATACATTTTTCTT
1 TGTATCGATACATTTTTCTT
7074899 TGTATCGATACA-------T
1 TGTATCGATACATTTTTCTT
7074912 TGTATCGATACATTTTTCTT
1 TGTATCGATACATTTTTCTT
7074932 TGTATCGATACATT
1 TGTATCGATACATT
7074946 GTATCGATAC
Statistics
Matches: 75, Mismatches: 5, Indels: 24
0.72 0.05 0.23
Matches are distributed among these distances:
13 13 0.17
20 44 0.59
24 1 0.01
25 17 0.23
ACGTcount: A:0.26, C:0.15, G:0.13, T:0.46
Consensus pattern (20 bp):
TGTATCGATACATTTTTCTT
Found at i:7074916 original size:13 final size:13
Alignment explanation
Indices: 7074898--7074969 Score: 84
Period size: 13 Copynumber: 6.0 Consensus size: 13
7074888 ACATTTTTCT
7074898 TTGTATCGATACA
1 TTGTATCGATACA
7074911 TTGTATCGATACA
1 TTGTATCGATACA
*
7074924 TT-T-T---T-CT
1 TTGTATCGATACA
7074931 TTGTATCGATACA
1 TTGTATCGATACA
7074944 TTGTATCGATACA
1 TTGTATCGATACA
*
7074957 CTGTATCGATACA
1 TTGTATCGATACA
7074970 GGAGGATTAT
Statistics
Matches: 50, Mismatches: 3, Indels: 12
0.77 0.05 0.18
Matches are distributed among these distances:
7 3 0.06
8 2 0.04
9 1 0.02
11 1 0.02
12 2 0.04
13 41 0.82
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.42
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:7074921 original size:33 final size:33
Alignment explanation
Indices: 7074879--7074956 Score: 156
Period size: 33 Copynumber: 2.4 Consensus size: 33
7074869 AGAAATTCTA
7074879 TGTATCGATACATTTTTCTTTGTATCGATACAT
1 TGTATCGATACATTTTTCTTTGTATCGATACAT
7074912 TGTATCGATACATTTTTCTTTGTATCGATACAT
1 TGTATCGATACATTTTTCTTTGTATCGATACAT
7074945 TGTATCGATACA
1 TGTATCGATACA
7074957 CTGTATCGAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.26, C:0.15, G:0.13, T:0.46
Consensus pattern (33 bp):
TGTATCGATACATTTTTCTTTGTATCGATACAT
Found at i:7075133 original size:20 final size:19
Alignment explanation
Indices: 7075092--7075134 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
7075082 ATCTTTTACA
7075092 AAATACTTGTTTTTCACTTC
1 AAATACTTGTTTTTCAC-TC
7075112 AAATCACTTCGTTTTTCA-TC
1 AAAT-ACTT-GTTTTTCACTC
7075132 AAA
1 AAA
7075135 ACCAGCATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 9 0.43
21 4 0.19
22 8 0.38
ACGTcount: A:0.30, C:0.21, G:0.05, T:0.44
Consensus pattern (19 bp):
AAATACTTGTTTTTCACTC
Found at i:7077429 original size:20 final size:21
Alignment explanation
Indices: 7077383--7077436 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 21
7077373 AAAACCCTTA
*
7077383 AATGTATCGATACACAATT-C
1 AATGTATCGATACACTATTGC
* *
7077403 AAAGTATCGATACA-TGTTGC
1 AATGTATCGATACACTATTGC
7077423 AATGTATCGATACA
1 AATGTATCGATACA
7077437 ATTTTTGATG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 2 0.07
20 27 0.93
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.30
Consensus pattern (21 bp):
AATGTATCGATACACTATTGC
Found at i:7077514 original size:13 final size:13
Alignment explanation
Indices: 7077496--7077521 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7077486 TACAGCAAGT
7077496 ATGTATCGATACA
1 ATGTATCGATACA
7077509 ATGTATCGATACA
1 ATGTATCGATACA
7077522 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:7080430 original size:32 final size:33
Alignment explanation
Indices: 7080388--7080451 Score: 85
Period size: 33 Copynumber: 2.0 Consensus size: 33
7080378 CATTTTATGG
7080388 TGTATCGATACAAAG-AACATTCATCGATACAA
1 TGTATCGATACAAAGCAACATTCATCGATACAA
* * * *
7080420 TGTATTGATACTAAGCAATATTTATCGATACA
1 TGTATCGATACAAAGCAACATTCATCGATACA
7080452 TCTGGGTGTG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 13 0.48
33 14 0.52
ACGTcount: A:0.41, C:0.16, G:0.12, T:0.31
Consensus pattern (33 bp):
TGTATCGATACAAAGCAACATTCATCGATACAA
Found at i:7081373 original size:18 final size:18
Alignment explanation
Indices: 7081350--7081396 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
7081340 GTACAAACAT
*
7081350 ACTACTCCTA-CAAATTCA
1 ACTACTCCTATCAAAAT-A
7081368 ACTACTCCTATCAAAATA
1 ACTACTCCTATCAAAATA
*
7081386 ACTAATCCTAT
1 ACTACTCCTAT
7081397 GACTAATCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 21 0.81
19 5 0.19
ACGTcount: A:0.40, C:0.30, G:0.00, T:0.30
Consensus pattern (18 bp):
ACTACTCCTATCAAAATA
Found at i:7086618 original size:45 final size:45
Alignment explanation
Indices: 7086549--7086653 Score: 183
Period size: 45 Copynumber: 2.3 Consensus size: 45
7086539 AATTTTTATT
*
7086549 CCTTGAGGAATCCATTTTATAACTTTATCCTTGGATGCATTGGCTC
1 CCTT-AGGAATCCATTTTATAACTTCATCCTTGGATGCATTGGCTC
*
7086595 CCTTAGGAATCCATTTTATAACTTCATCCTTTGATGCATTGGCTC
1 CCTTAGGAATCCATTTTATAACTTCATCCTTGGATGCATTGGCTC
7086640 CCTTAGGAATCCAT
1 CCTTAGGAATCCAT
7086654 ATTTTCTTAA
Statistics
Matches: 57, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
45 53 0.93
46 4 0.07
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (45 bp):
CCTTAGGAATCCATTTTATAACTTCATCCTTGGATGCATTGGCTC
Found at i:7088636 original size:35 final size:35
Alignment explanation
Indices: 7088581--7088678 Score: 180
Period size: 35 Copynumber: 2.8 Consensus size: 35
7088571 ACCTTACAAT
*
7088581 ACTATCTTTT-CAAAGGCTAAGATAGAACCTTTTC
1 ACTATCTTTTATAAAGGCTAAGATAGAACCTTTTC
7088615 ACTATCTTTTATAAAGGCTAAGATAGAACCTTTTC
1 ACTATCTTTTATAAAGGCTAAGATAGAACCTTTTC
7088650 ACTATCTTTTATAAAGGCTAAGATAGAAC
1 ACTATCTTTTATAAAGGCTAAGATAGAAC
7088679 TTGTCAATCA
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
34 10 0.16
35 52 0.84
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (35 bp):
ACTATCTTTTATAAAGGCTAAGATAGAACCTTTTC
Found at i:7091224 original size:20 final size:21
Alignment explanation
Indices: 7091199--7091237 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7091189 TCTTAACAGT
7091199 CCATGTT-CATGCATTTTATA
1 CCATGTTCCATGCATTTTATA
*
7091219 CCATGTTCCTTGCATTTTA
1 CCATGTTCCATGCATTTTA
7091238 ATAAGTCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.21, C:0.23, G:0.10, T:0.46
Consensus pattern (21 bp):
CCATGTTCCATGCATTTTATA
Found at i:7096495 original size:20 final size:20
Alignment explanation
Indices: 7096470--7096523 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 20
7096460 GTTTCAAACA
7096470 ATGTATCGATACAAT-T-CATC
1 ATGTATCGATACAATGTGC--C
*
7096490 ATGTATAGATACAATGTGCC
1 ATGTATCGATACAATGTGCC
7096510 ATGTATCGATACAA
1 ATGTATCGATACAA
7096524 ACAGTGGTAG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 28 0.93
21 1 0.03
22 1 0.03
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACAATGTGCC
Found at i:7096596 original size:19 final size:19
Alignment explanation
Indices: 7096552--7096607 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
7096542 CTGCCAGTTT
**
7096552 CATGTATCGATACAATTGTG
1 CATGTATCGATACAA-TGAA
7096572 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
*
7096591 CATGTATCGATATAATG
1 CATGTATCGATACAATG
7096608 TATCGATACA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 18 0.55
20 15 0.45
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:7096614 original size:32 final size:33
Alignment explanation
Indices: 7096573--7096635 Score: 94
Period size: 32 Copynumber: 1.9 Consensus size: 33
7096563 ACAATTGTGC
*
7096573 ATGTATCGATACAATG-A-ACATGTATCGATATA
1 ATGTATCGATACAAAGCATA-ATGTATCGATATA
7096605 ATGTATCGATACAAAGCATAATGTATCGATA
1 ATGTATCGATACAAAGCATAATGTATCGATA
7096636 CATCTAGATG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 15 0.54
33 12 0.43
34 1 0.04
ACGTcount: A:0.41, C:0.13, G:0.16, T:0.30
Consensus pattern (33 bp):
ATGTATCGATACAAAGCATAATGTATCGATATA
Found at i:7098064 original size:13 final size:13
Alignment explanation
Indices: 7098046--7098070 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7098036 TTCAATAGTT
7098046 TGTATCGATACAA
1 TGTATCGATACAA
7098059 TGTATCGATACA
1 TGTATCGATACA
7098071 TAATTAGCTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:7098131 original size:13 final size:13
Alignment explanation
Indices: 7098113--7098138 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7098103 CATTTTTCTG
7098113 TGTATCGATACAT
1 TGTATCGATACAT
7098126 TGTATCGATACAT
1 TGTATCGATACAT
7098139 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:7098137 original size:33 final size:33
Alignment explanation
Indices: 7098093--7098159 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
7098083 GCCAAGGAAA
***
7098093 TGTATCCATACATTTTTCTGTGTATCGATACAT
1 TGTATCCATACATGGATCTGTGTATCGATACAT
* *
7098126 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCCATACATGGATCTGTGTATCGATACAT
7098159 T
1 T
7098160 TGGAAATTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.25, C:0.16, G:0.15, T:0.43
Consensus pattern (33 bp):
TGTATCCATACATGGATCTGTGTATCGATACAT
Found at i:7100634 original size:27 final size:28
Alignment explanation
Indices: 7100604--7100679 Score: 111
Period size: 27 Copynumber: 2.8 Consensus size: 28
7100594 TTTCTTCACA
7100604 ATCGGGGATACTCCAACCCCGTTA-ATC
1 ATCGGGGATACTCCAACCCCGTTATATC
*
7100631 ATCGGGGATACTCCAACCCCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATATC
*
7100659 -TGAGGGGATACTCCAACCCCG
1 AT-CGGGGATACTCCAACCCCG
7100680 ACTTTATTTC
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
27 25 0.56
28 20 0.44
ACGTcount: A:0.24, C:0.33, G:0.21, T:0.22
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTATATC
Found at i:7100730 original size:51 final size:51
Alignment explanation
Indices: 7100662--7100883 Score: 219
Period size: 52 Copynumber: 4.3 Consensus size: 51
7100652 TTATTTCTGA
* * ***
7100662 GGGGATACTCCAACCCCGACTTTATTTCCAAAATATTGATTTTTCATAATC
1 GGGGATACTCCAACCCCGATTTTATTTCTAAAATACCAATTTTTCATAATC
* * * *
7100713 GGGGATACTCCAACCCCGGTTTTATTGCTAAAATACTACTTTTTTCATAATC
1 GGGGATACTCCAACCCCGATTTTATTTCTAAAATACCA-ATTTTTCATAATC
* * * * * * * *
7100765 GGGGATACTTCAATCCCGGTTTTATTTTTGAAACACCAATTTTCCTTTAATC
1 GGGGATACTCCAACCCCGATTTTATTTCTAAAATACCAATTTTTC-ATAATC
* * * *
7100817 GGGGATACTCCAACTCCGATTTTATTTTCAAAAATACCAATTTTTCACAGTC
1 GGGGATACTCCAACCCCGATTTTA-TTTCTAAAATACCAATTTTTCATAATC
*
7100869 GAGGATACTCCAACC
1 GGGGATACTCCAACC
7100884 TCGTTATTTC
Statistics
Matches: 137, Mismatches: 31, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
51 37 0.27
52 84 0.61
53 16 0.12
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.35
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGATTTTATTTCTAAAATACCAATTTTTCATAATC
Found at i:7100816 original size:52 final size:50
Alignment explanation
Indices: 7100498--7100883 Score: 166
Period size: 52 Copynumber: 7.4 Consensus size: 50
7100488 AATTCTCCAC
* * * *
7100498 AATCGGGGATATTCCAACTCCGATTTTATTTTTAAAACACTAATTTTCTAT
1 AATCGGGGATACTCCAAC-CCGGTTTTATTTTTAAAACACCAATTTTTTAT
* * ** * *
7100549 AATCGGGGATACTCTAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCAC
1 AATCGGGGATACTCCAAC-CCGGTTTTATTT--TTAAAACACCAATTT-TTTAT
* * ***** * * * *
7100603 AATCGGGGATACTCCAACCCCGTTAATCATCGGGGATACTCCAACCCCGTTATTTCT
1 AATCGGGGATACTCCAACCCGGTT--TTATTTTTAAAACACCAA-----TTTTTTAT
* ** ** * *** *
7100660 GA--GGGGATACTCCAACCCCGACTTTATTTCCAAAATATTGATTTTTCAT
1 AATCGGGGATACTCCAA-CCCGGTTTTATTTTTAAAACACCAATTTTTTAT
** * * *
7100709 AATCGGGGATACTCCAACCCCGGTTTTATTGCTAAAATACTACTTTTTTCAT
1 AATCGGGGATACTCCAA-CCCGGTTTTATTTTTAAAACACCAATTTTTT-AT
* *
7100761 AATCGGGGATACTTCAATCCCGGTTTTATTTTTGAAACACCAATTTTCCTT-T
1 AATCGGGGATACTCCAA-CCCGGTTTTATTTTTAAAACACCAATTTT--TTAT
* * * * *
7100813 AATCGGGGATACTCCAACTCCGATTTTATTTTCAAAAATACCAATTTTTCAC
1 AATCGGGGATACTCCAAC-CCGGTTTTATTTT-TAAAACACCAATTTTTTAT
* *
7100865 AGTCGAGGATACTCCAACC
1 AATCGGGGATACTCCAACC
7100884 TCGTTATTTC
Statistics
Matches: 248, Mismatches: 68, Indels: 38
0.70 0.19 0.11
Matches are distributed among these distances:
49 6 0.02
51 69 0.28
52 86 0.35
53 35 0.14
54 27 0.11
55 16 0.06
56 4 0.02
57 3 0.01
58 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (50 bp):
AATCGGGGATACTCCAACCCGGTTTTATTTTTAAAACACCAATTTTTTAT
Found at i:7100903 original size:28 final size:28
Alignment explanation
Indices: 7100871--7100941 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
7100861 TCACAGTCGA
* * **
7100871 GGATACTCCAACCTCGTTATTTCATCGG
1 GGATACTCCAACCCCGTTACTTCAGAGG
*
7100899 GGATACTCCAACCCCGTTACTTCCGAGG
1 GGATACTCCAACCCCGTTACTTCAGAGG
7100927 GGATACTCCAACCCC
1 GGATACTCCAACCCC
7100942 AGCTTTATTC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.23, C:0.35, G:0.18, T:0.24
Consensus pattern (28 bp):
GGATACTCCAACCCCGTTACTTCAGAGG
Found at i:7100965 original size:263 final size:263
Alignment explanation
Indices: 7100498--7100991 Score: 764
Period size: 263 Copynumber: 1.9 Consensus size: 263
7100488 AATTCTCCAC
*
7100498 AATCGGGGATATTCCAACTCCGATTTTATTTTTAAAACACTAATTTTCTATAATCGGGGATACTC
1 AATCGGGGATATTCCAACTCCGATTTTATTTTTAAAACACCAATTTTCTATAATCGGGGATACTC
* *
7100563 TAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATACTCCAACCCCGTTA
66 CAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCCCGTTA
* * *
7100628 ATCATCGGGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCCAACCCCGACTTTATTTCCAA
131 ATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGACTTTATTCCCAA
*
7100693 AATATTGATTTTTCATAATCGGGGATACTCCAACCCCGGTTTTATTGCTAAAATACTACTTTTTT
196 AATATTGATTTCTCATAATCGGGGATACTCCAACCCCGGTTTTATTGCTAAAATACTACTTTTTT
7100758 CAT
261 CAT
* * *
7100761 AATCGGGGATACTT-CAA-TCCCGGTTTTATTTTTGAAACACCAATTTTCCTTTAATCGGGGATA
1 AATCGGGGATA-TTCCAACT-CCGATTTTATTTTTAAAACACCAATTTT-CTATAATCGGGGATA
* * * *
7100824 CTCCAACTCCGATTTTATTTTC-AAAAATACCAATTT-TTCACAGTCGAGGATACTCCAACCTCG
63 CTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCCCG
*
7100887 TTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCC-AGCTTTATT
128 TTA-ATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGA-CTTTATT
*
7100951 CCCAAAATATTGATTTCTCATAATTGGGGATACTCCAACCC
191 CCCAAAATATTGATTTCTCATAATCGGGGATACTCCAACCC
7100992 TGTTATTTTC
Statistics
Matches: 210, Mismatches: 16, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
262 29 0.14
263 145 0.69
264 36 0.17
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (263 bp):
AATCGGGGATATTCCAACTCCGATTTTATTTTTAAAACACCAATTTTCTATAATCGGGGATACTC
CAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCCCGTTA
ATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGACTTTATTCCCAA
AATATTGATTTCTCATAATCGGGGATACTCCAACCCCGGTTTTATTGCTAAAATACTACTTTTTT
CAT
Found at i:7101045 original size:79 final size:79
Alignment explanation
Indices: 7100896--7101098 Score: 221
Period size: 79 Copynumber: 2.6 Consensus size: 79
7100886 GTTATTTCAT
* * *
7100896 CGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCAGCTTTATTCCCAAAATAT
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCGAGCTTTATTCCCAAAATAT
* * *
7100961 TGATTTCTCATAAT
66 CGATTTCTCACAAC
* * * * ** *
7100975 TGGGGATACTCCAACCCTGTTATTTTCGAGGGGATACTCCAATCCCGA-TTTTTTTTTC-TAATC
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAA-CCCGAGCTTTATTCCCAAAAT-
7101038 ATCGATTTCTCACAAC
64 ATCGATTTCTCACAAC
* * * *
7101054 CGGGGATACTCCAGCCCCGTTATTTTCAAGGGAACACTCCAACCC
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCC
7101099 CGTTATTATC
Statistics
Matches: 103, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
78 6 0.06
79 93 0.90
80 4 0.04
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.30
Consensus pattern (79 bp):
CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCGAGCTTTATTCCCAAAATAT
CGATTTCTCACAAC
Found at i:7103402 original size:26 final size:26
Alignment explanation
Indices: 7103372--7103433 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
7103362 GTAACCTATA
* *
7103372 TATCGATACATTGTATTGATACCATG
1 TATCGATACATTGTATCGATACAATG
* *
7103398 TATCGATACATTTTATCGATATAATG
1 TATCGATACATTGTATCGATACAATG
*
7103424 TATCAATACA
1 TATCGATACA
7103434 AAAAAACATT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.39
Consensus pattern (26 bp):
TATCGATACATTGTATCGATACAATG
Found at i:7103414 original size:13 final size:13
Alignment explanation
Indices: 7103372--7103433 Score: 63
Period size: 13 Copynumber: 4.8 Consensus size: 13
7103362 GTAACCTATA
7103372 TATCGATACATTG
1 TATCGATACATTG
*
7103385 TATTGATACCA-TG
1 TATCGATA-CATTG
*
7103398 TATCGATACATTT
1 TATCGATACATTG
* *
7103411 TATCGATATAATG
1 TATCGATACATTG
*
7103424 TATCAATACA
1 TATCGATACA
7103434 AAAAAACATT
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
12 2 0.05
13 35 0.90
14 2 0.05
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.39
Consensus pattern (13 bp):
TATCGATACATTG
Found at i:7107961 original size:9 final size:9
Alignment explanation
Indices: 7107928--7107958 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
7107918 TCCGAGTCAA
7107928 CATCATTAT
1 CATCATTAT
7107937 CATCATTAT
1 CATCATTAT
*
7107946 CATCTTTAT
1 CATCATTAT
7107955 CATC
1 CATC
7107959 TTTGATGGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.29, C:0.26, G:0.00, T:0.45
Consensus pattern (9 bp):
CATCATTAT
Found at i:7109501 original size:20 final size:20
Alignment explanation
Indices: 7109476--7109528 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
7109466 TCCCGCTGCT
*
7109476 ATGTATCGATACAATTTATA
1 ATGTATCGATACAATTCATA
*
7109496 ATGTATTGATACAATTCATA
1 ATGTATCGATACAATTCATA
7109516 ATGTATCGATACA
1 ATGTATCGATACA
7109529 TGCATTTGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.38
Consensus pattern (20 bp):
ATGTATCGATACAATTCATA
Found at i:7109624 original size:33 final size:32
Alignment explanation
Indices: 7109569--7109633 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 32
7109559 TTTGAAGTAA
7109569 TGTATCGATACAATTCATCATGTATCAATACAT
1 TGTATCGATACAATTCA-CATGTATCAATACAT
*
7109602 TGTATCGATACAATATGC-CATGTATCGATACA
1 TGTATCGATACAAT-T-CACATGTATCAATACA
7109634 AACAGTGGTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 27 0.93
34 1 0.03
35 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.34
Consensus pattern (32 bp):
TGTATCGATACAATTCACATGTATCAATACAT
Found at i:7111860 original size:16 final size:17
Alignment explanation
Indices: 7111829--7111860 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7111819 AGTTCCCTTC
7111829 AAAAATGATTTCAAAAA
1 AAAAATGATTTCAAAAA
7111846 AAAAATGATTT-AAAA
1 AAAAATGATTTCAAAA
7111861 GAAAGGGAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.66, C:0.03, G:0.06, T:0.25
Consensus pattern (17 bp):
AAAAATGATTTCAAAAA
Found at i:7113659 original size:29 final size:28
Alignment explanation
Indices: 7113536--7113808 Score: 171
Period size: 29 Copynumber: 9.6 Consensus size: 28
7113526 AATAACTTTC
** * *
7113536 TTAAAGTCCACGACCCAGTGACACCCTT
1 TTAAAGTCCATAACTCAGTGGCACCCTT
* * * *
7113564 CTCAAAGTCCATAACTC--TGACAACTTT
1 -TTAAAGTCCATAACTCAGTGGCACCCTT
** *
7113591 TTCCAAAGTCCACGACTTAGTGGCACCCCTT
1 TT--AAAGTCCATAACTCAGTGGCA-CCCTT
*
7113622 CTCAAAGTCCATAACTCAGTGGCACCCTT
1 -TTAAAGTCCATAACTCAGTGGCACCCTT
** * **
7113651 CAAAAAGTCTATAACTCTA-TGGCACTTTT
1 -TTAAAGTCCATAACTC-AGTGGCACCCTT
*
7113680 TTAAAATCCATAACTTCA-TGGCACCCCTT
1 TTAAAGTCCATAAC-TCAGTGGCA-CCCTT
* * **
7113709 TTAAAGTCCACAATTTTGTGGCACCCTT
1 TTAAAGTCCATAACTCAGTGGCACCCTT
*
7113737 TTAAAGTCCATAACTCTGTGGCAACCCTT
1 TTAAAGTCCATAACTCAGTGGC-ACCCTT
**
7113766 TTAAAGTCCATAA-TCTA-TGGTGCCCTT
1 TTAAAGTCCATAACTC-AGTGGCACCCTT
*
7113793 TTAAAGTCCACAACTC
1 TTAAAGTCCATAACTC
7113809 CATGGCGCTC
Statistics
Matches: 191, Mismatches: 40, Indels: 27
0.74 0.16 0.10
Matches are distributed among these distances:
26 1 0.01
27 25 0.13
28 59 0.31
29 79 0.41
30 23 0.12
31 3 0.02
32 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.30
Consensus pattern (28 bp):
TTAAAGTCCATAACTCAGTGGCACCCTT
Found at i:7113715 original size:57 final size:54
Alignment explanation
Indices: 7113611--7113871 Score: 171
Period size: 57 Copynumber: 4.6 Consensus size: 54
7113601 CACGACTTAG
* * ** *
7113611 TGGCACCCCTTCTCAAAGTCCATAACTCAGTGGCACCCTTCAAAAAGTCTATAACTCTA
1 TGGCA-CCCTT-TTAAAATCCATAACTCA-TGGCACCCTT-TTAAAGTCCATAA-TCTA
** * * *
7113670 TGGCACTTTTTTAAAATCCATAACTTCATGGCACCCCTTTTAAAGTCCACAATTTTG
1 TGGCACCCTTTTAAAATCCATAAC-TCATGGCA-CCCTTTTAAAGTCCATAA-TCTA
* *
7113727 TGGCACCCTTTTAAAGTCCATAACTCTGTGGCAACCCTTTTAAAGTCCATAATCTA
1 TGGCACCCTTTTAAAATCCATAACTC-ATGGC-ACCCTTTTAAAGTCCATAATCTA
** * * * * * * * *
7113783 TGGTGCCCTTTTAAAGTCCACAACTCCATGGCGCTCTTTCAAAGTCTACAACACTA
1 TGGCACCCTTTTAAAATCCATAACT-CATGGCACCCTTTTAAAGTCCATAA-TCTA
* ** *
7113839 TAGCACCCTTTTAAAGCCCACAACTCTATGGCA
1 TGGCACCCTTTTAAAATCCATAACTC-ATGGCA
7113872 TTGCCACCCT
Statistics
Matches: 162, Mismatches: 33, Indels: 17
0.76 0.16 0.08
Matches are distributed among these distances:
55 15 0.09
56 59 0.36
57 71 0.44
58 12 0.07
59 5 0.03
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.30
Consensus pattern (54 bp):
TGGCACCCTTTTAAAATCCATAACTCATGGCACCCTTTTAAAGTCCATAATCTA
Found at i:7113743 original size:28 final size:27
Alignment explanation
Indices: 7113698--7113871 Score: 132
Period size: 28 Copynumber: 6.2 Consensus size: 27
7113688 CATAACTTCA
*
7113698 TGGCACCCCTTTTAAAGTCCACAATTTTG
1 TGGCA-CCCTTTTAAAGTCCACAA-TCTG
*
7113727 TGGCACCCTTTTAAAGTCCATAACTCTG
1 TGGCACCCTTTTAAAGTCCACAA-TCTG
* *
7113755 TGGCAACCCTTTTAAAGTCCATAATCTA
1 TGGC-ACCCTTTTAAAGTCCACAATCTG
** **
7113783 TGGTGCCCTTTTAAAGTCCACAACTCCA
1 TGGCACCCTTTTAAAGTCCACAA-TCTG
* * * * * *
7113811 TGGCGCTCTTTCAAAGTCTACAACACTA
1 TGGCACCCTTTTAAAGTCCACAA-TCTG
* * *
7113839 TAGCACCCTTTTAAAGCCCACAACTCTA
1 TGGCACCCTTTTAAAGTCCACAA-TCTG
7113867 TGGCA
1 TGGCA
7113872 TTGCCACCCT
Statistics
Matches: 121, Mismatches: 22, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
27 17 0.14
28 80 0.66
29 24 0.20
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.30
Consensus pattern (27 bp):
TGGCACCCTTTTAAAGTCCACAATCTG
Found at i:7113827 original size:84 final size:86
Alignment explanation
Indices: 7113703--7113911 Score: 217
Period size: 84 Copynumber: 2.4 Consensus size: 86
7113693 CTTCATGGCA
* * * * * * * *
7113703 CCCCTTTTAAAGTCCACAATTTTGTGGCACCCTTTTAAAGTCCATAACTCTGTGGCAACCCTTTT
1 CCCCTTTTAAAGTCCACAACTCTATGGCACCCTTTCAAAGTCCACAACACTATAGC-ACCCTTTT
* *
7113768 AAAGTCCATAA-TCTATGG-TG
65 AAAGCCCACAACTCTATGGATG
* * * *
7113788 -CCCTTTTAAAGTCCACAACTCCATGGCGCTCTTTCAAAGTCTACAACACTATAGCACCCTTTTA
1 CCCCTTTTAAAGTCCACAACTCTATGGCACCCTTTCAAAGTCCACAACACTATAGCACCCTTTTA
7113852 AAGCCCACAACTCTATGGCATTG
66 AAGCCCACAACTCTATGG-A-TG
7113875 CCACCCTTTTTAAAGTCCACAACTCTATGGCACCCTT
1 -C-CCC-TTTTAAAGTCCACAACTCTATGGCACCCTT
7113912 GAATTAGCAC
Statistics
Matches: 99, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
83 17 0.17
84 50 0.51
87 2 0.02
90 3 0.03
91 27 0.27
ACGTcount: A:0.27, C:0.31, G:0.12, T:0.31
Consensus pattern (86 bp):
CCCCTTTTAAAGTCCACAACTCTATGGCACCCTTTCAAAGTCCACAACACTATAGCACCCTTTTA
AAGCCCACAACTCTATGGATG
Found at i:7114019 original size:52 final size:52
Alignment explanation
Indices: 7113963--7114246 Score: 227
Period size: 52 Copynumber: 5.5 Consensus size: 52
7113953 ATCGTTGACT
* *
7113963 TTGAATCAATAGATTGGCACTTTTATCATCTTTAAG-CCTAATGTCGCTAGCC
1 TTGAATCAACACATTGGCACTTTTATCATCTTTAAGTCC-AATGTCGCTAGCC
* * * * * *
7114015 TTGAATTAACATATTGGCATCCTTCATCATATTTAAGTCCAATGTTGCTAGCC
1 TTGAATCAACACATTGGCA-CTTTTATCATCTTTAAGTCCAATGTCGCTAGCC
* * * * * * * *
7114068 ATGAATTAGCGCATTGCCA-TATTTTTCATCTTTAAGTCCAATGTCGTTGGCC
1 TTGAATCAACACATTGGCACT-TTTATCATCTTTAAGTCCAATGTCGCTAGCC
* * * *
7114120 TTGAA-CTAGCATATTGGCA-TTCTTATCATTTTTTAGTCCAATGTCGCTA-CC
1 TTGAATC-AACACATTGGCACTT-TTATCATCTTTAAGTCCAATGTCGCTAGCC
* * * * * * * *
7114171 TCGAATCAGCACATTGGTACTCTTATCATCTTTAAGTGCAGTGTCACAAGCC
1 TTGAATCAACACATTGGCACTTTTATCATCTTTAAGTCCAATGTCGCTAGCC
*
7114223 TTGAATCTACACATTGGCACTTTT
1 TTGAATCAACACATTGGCACTTTT
7114247 GTCAAGAAAT
Statistics
Matches: 180, Mismatches: 44, Indels: 16
0.75 0.18 0.07
Matches are distributed among these distances:
51 38 0.21
52 100 0.56
53 40 0.22
54 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (52 bp):
TTGAATCAACACATTGGCACTTTTATCATCTTTAAGTCCAATGTCGCTAGCC
Found at i:7114930 original size:20 final size:20
Alignment explanation
Indices: 7114902--7114958 Score: 71
Period size: 19 Copynumber: 2.9 Consensus size: 20
7114892 GTATTGATAC
*
7114902 AAGTTAATGTATCGATACAT
1 AAGTGAATGTATCGATACAT
* *
7114922 AAGTGAATGTAT-AATGCAT
1 AAGTGAATGTATCGATACAT
*
7114941 AACTGAATGTATCGATAC
1 AAGTGAATGTATCGATAC
7114959 TGGACCTTAT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.40, C:0.11, G:0.18, T:0.32
Consensus pattern (20 bp):
AAGTGAATGTATCGATACAT
Found at i:7115636 original size:14 final size:15
Alignment explanation
Indices: 7115608--7115636 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7115598 TAGAGCTCTT
7115608 AAACACCTCCCAAAG
1 AAACACCTCCCAAAG
7115623 AAACACCT-CCAAAG
1 AAACACCTCCCAAAG
7115637 GTATTTTCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.48, C:0.38, G:0.07, T:0.07
Consensus pattern (15 bp):
AAACACCTCCCAAAG
Found at i:7121372 original size:23 final size:21
Alignment explanation
Indices: 7121337--7121379 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
7121327 AATTTTAGAA
*
7121337 AAATTGAATTTTTCTAAATTTTT
1 AAATTGAA-CTTT-TAAATTTTT
*
7121360 AAATTTAACTTTTAAATTTT
1 AAATTGAACTTTTAAATTTT
7121380 AAAAATTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 8 0.44
22 3 0.17
23 7 0.39
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.56
Consensus pattern (21 bp):
AAATTGAACTTTTAAATTTTT
Found at i:7121546 original size:111 final size:113
Alignment explanation
Indices: 7121364--7121587 Score: 285
Period size: 112 Copynumber: 2.0 Consensus size: 113
7121354 ATTTTTAAAT
* * * *
7121364 TTAACTTTTAAATTTTAAAAATTACGTTTCGTACCTGACGGAAAACTAAAAAATACGAAAAGTGT
1 TTAACTTCTAAATTTCAAAAATTACGTTTCGTACCTAACGAAAAACTAAAAAATACGAAAAGTGT
* *
7121429 TTAAAAA-AATTTTCATACCCCTACAGAAAGCCACAGAGATACGAAAA
66 TAAAAAAGAATTTTCATACCCCTACAGAAAACCACAGAGATACGAAAA
* * *
7121476 TTAACTTCT-AATTTCAAAAATTATGTTTCGTACCTAACGAAAAAACTAAGAGATACG-AAAG-G
1 TTAACTTCTAAATTTCAAAAATTACGTTTCGTACCTAACG-AAAAACTAAAAAATACGAAAAGTG
* * * *
7121538 TATAAAAAAGAATTTTCATAGCCCTACAGAAAACCATAGGGATATGAAAA
65 T-TAAAAAAGAATTTTCATACCCCTACAGAAAACCACAGAGATACGAAAA
7121588 CATAAACGAC
Statistics
Matches: 96, Mismatches: 13, Indels: 6
0.83 0.11 0.05
Matches are distributed among these distances:
110 2 0.02
111 37 0.39
112 57 0.59
ACGTcount: A:0.46, C:0.15, G:0.12, T:0.26
Consensus pattern (113 bp):
TTAACTTCTAAATTTCAAAAATTACGTTTCGTACCTAACGAAAAACTAAAAAATACGAAAAGTGT
TAAAAAAGAATTTTCATACCCCTACAGAAAACCACAGAGATACGAAAA
Found at i:7122959 original size:18 final size:18
Alignment explanation
Indices: 7122936--7122971 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
7122926 TTCTTCCATT
7122936 TTGCATTCATTTGCTGCA
1 TTGCATTCATTTGCTGCA
7122954 TTGCATTCATTTGCTGCA
1 TTGCATTCATTTGCTGCA
7122972 GCTTAATAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.22, G:0.17, T:0.44
Consensus pattern (18 bp):
TTGCATTCATTTGCTGCA
Done.