Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold25
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9553305
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 6276 characters in sequence are not A, C, G, or T
File 43 of 56
Found at i:7248664 original size:32 final size:33
Alignment explanation
Indices: 7248604--7248668 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 33
7248594 CACACCTAGA
* *
7248604 TGTATCGATATATGCTGCTTTGTATCGATACAT
1 TGTATCGATACATGCTGCATTGTATCGATACAT
*
7248637 TGTATCGATACATG-TTCATTGTATCGATACAT
1 TGTATCGATACATGCTGCATTGTATCGATACAT
7248669 GGCCAAATTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.55
33 13 0.45
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATGCTGCATTGTATCGATACAT
Found at i:7248680 original size:21 final size:19
Alignment explanation
Indices: 7248634--7248690 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
7248624 TGTATCGATA
**
7248634 CATTGTATCGATACATGTT
1 CATTGTATCGATACATGGC
7248653 CATTGTATCGATACATGGC
1 CATTGTATCGATACATGGC
7248672 CAAATTGTATCGATACATG
1 C--ATTGTATCGATACATG
7248691 AAACTGGCAG
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 18 0.53
21 16 0.47
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.35
Consensus pattern (19 bp):
CATTGTATCGATACATGGC
Found at i:7248756 original size:13 final size:13
Alignment explanation
Indices: 7248735--7248765 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
7248725 CGATACATGG
*
7248735 TACAATGTATCGA
1 TACATTGTATCGA
7248748 TACATTGTATCGA
1 TACATTGTATCGA
7248761 TACAT
1 TACAT
7248766 GAAGAAATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:7248765 original size:33 final size:32
Alignment explanation
Indices: 7248723--7248785 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 32
7248713 CACTATTTGC
7248723 ATCGATACATG-GTACAATGTATCGATACATTGT
1 ATCGATACATGAG-A-AATGTATCGATACATTGT
7248756 ATCGATACATGAAGAAATGTATCGATACAT
1 ATCGATACATG-AGAAATGTATCGATACAT
7248786 AGCATGTAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
33 26 0.93
34 1 0.04
35 1 0.04
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.30
Consensus pattern (32 bp):
ATCGATACATGAGAAATGTATCGATACATTGT
Found at i:7248892 original size:10 final size:10
Alignment explanation
Indices: 7248877--7248903 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
7248867 AAAGCATGAA
7248877 AACAAGCACC
1 AACAAGCACC
7248887 AACAAGCACC
1 AACAAGCACC
7248897 AACAAGC
1 AACAAGC
7248904 TTATAATGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.52, C:0.37, G:0.11, T:0.00
Consensus pattern (10 bp):
AACAAGCACC
Found at i:7256849 original size:36 final size:38
Alignment explanation
Indices: 7256809--7256880 Score: 112
Period size: 36 Copynumber: 1.9 Consensus size: 38
7256799 AAAGGGGGAG
7256809 AAGATAATCGTTTAAAGGAGAG-AT-TTTTTTTAAGAA
1 AAGATAATCGTTTAAAGGAGAGAATATTTTTTTAAGAA
* *
7256845 AAGATAATCGTTTAAGGGGGAGAATATTTTTTTAAG
1 AAGATAATCGTTTAAAGGAGAGAATATTTTTTTAAG
7256881 GGGAGAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
36 20 0.62
37 2 0.06
38 10 0.31
ACGTcount: A:0.39, C:0.03, G:0.22, T:0.36
Consensus pattern (38 bp):
AAGATAATCGTTTAAAGGAGAGAATATTTTTTTAAGAA
Found at i:7258433 original size:79 final size:78
Alignment explanation
Indices: 7258237--7258484 Score: 286
Period size: 79 Copynumber: 3.2 Consensus size: 78
7258227 ATGGGGCTAA
*
7258237 AGTATCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAACTGGGGTTGGAGTATCCCCTT-GA
1 AGTATCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAAC-GGGGTTGGAGTAT-CCCTTCGG
7258301 AAATAAC-GGGTTGG
64 AAATAACGGGGTTGG
* * * * * *
7258315 AGTATCCCCGGTTGTAAAAAATCGATGA-TTAGGAAATAAAATCGGGATTGGAGTATCCCTTCGG
1 AGTATCCCCGATTGTGAGAAATCAAT-ATTTTGGAAATAAAA-CGGGGTTGGAGTATCCCTTCGG
7258379 AAATAACGGGGTTGG
64 AAATAACGGGGTTGG
** * * *
7258394 AGTATCCCTAATTATGAGAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTATCCCCTCGGA
1 AGTATCCCCGATTGTGAGAAATCAATATTTTGGAAATAAA-ACGGGGTTGGAGTATCCCTTCGGA
** **
7258459 GGTAACGACGTTGG
65 AATAACGGGGTTGG
7258473 AGTATCCCCGAT
1 AGTATCCCCGAT
7258485 GAAATAACGA
Statistics
Matches: 140, Mismatches: 24, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
77 5 0.04
78 55 0.39
79 80 0.57
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (78 bp):
AGTATCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAACGGGGTTGGAGTATCCCTTCGGAA
ATAACGGGGTTGG
Found at i:7258489 original size:107 final size:107
Alignment explanation
Indices: 7258362--7258772 Score: 326
Period size: 107 Copynumber: 3.9 Consensus size: 107
7258352 AAAATCGGGA
* *
7258362 TTGGAGTATCCCTTCG--GAAATAACGGGGTTGGAGTATCCCTAATTATGAGAAATCAATATTTT
1 TTGGAGTATCCC--CGATGAAATAACGAGGTTGGAGTATCCCTGATTATGAGAAATCAATATTTT
* *
7258425 GGAAATAAAGCCGGGGTTGGAGTATCCCCTCGGAGGTAACGACG
64 GGAAATAAAGACGGGGTTGGAGTATCCCCTCGGAGGTAACGAAG
* * *** *
7258469 TTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTAT-CCTCGATTGTGAAAAATTGGTGTTTTT
1 TTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTATCCCT-GATTATGAGAAATCAAT-ATTTT
* * * *
7258533 GGAAATAAA-ATCGGAGTTGGAGTAT-CCC-C-GA-TTAAAGGAAAA
64 GGAAATAAAGA-CGGGGTTGGAGTATCCCCTCGGAGGT-AACG-AAG
* * **** * * *
7258575 TTGGTGTTTTGAAGAT-AAA-ACCGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTGG
1 TTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTATCCCTGATTATGAGAAATCAATATTTTGG
* **
7258638 AAATAAAGATGGGG-TGAGAGTATCCCCTCGGAGGTAACGGGG
66 AAATAAAGACGGGGTTG-GAGTATCCCCTCGGAGGTAACGAAG
* * * *** *
7258680 TTGGAGTATCCCCGATGAAATAATGAGGTTGGAGTAT-CCTCGATTGTGAAAAATTGTTGTTTTT
1 TTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTATCCCT-GATTATGAGAAATCAAT-ATTTT
*
7258744 GGAAATAAA-ATCGGAGTTGGAGTATCCCC
64 GGAAATAAAGA-CGGGGTTGGAGTATCCCC
7258773 GATTAAAGGA
Statistics
Matches: 230, Mismatches: 54, Indels: 39
0.71 0.17 0.12
Matches are distributed among these distances:
102 2 0.01
103 22 0.10
104 31 0.13
105 23 0.10
106 25 0.11
107 73 0.32
108 52 0.23
109 2 0.01
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (107 bp):
TTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTATCCCTGATTATGAGAAATCAATATTTTGG
AAATAAAGACGGGGTTGGAGTATCCCCTCGGAGGTAACGAAG
Found at i:7258565 original size:52 final size:52
Alignment explanation
Indices: 7258496--7258839 Score: 204
Period size: 52 Copynumber: 6.6 Consensus size: 52
7258486 AAATAACGAG
* *
7258496 GTTGGAGTATCCTCGATTGTGAAAAATTGGTGTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTTGGAAATAAAATCGGA
* * * *
7258548 GTTGGAGTATCCCCGATTAAAGGAAAATTGGTG-TTTT-GAAGATAAAACCGGG
1 GTTGGAGTATCCCCGATT-ATGAAAAATTGGTGTTTTTGGAA-ATAAAATCGGA
* *** *
7258600 GTTGGAGTATCCCCGATTATGAGAAATCAAT-ATTTTGGAAATAAAGAT-GG-
1 GTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTTGGAAATAAA-ATCGGA
* **** * *** * ***
7258650 GGTGAGAGTATCCCCTCGGAGGTAACGGGGTTGGAGTATCCCCGATGAAAT--AAT--GA
1 GTTG-GAGTATCCCCGATTATG-AA--AAATTGGTGT-T-TTTG--GAAATAAAATCGGA
* * *
7258706 GGTTGGAGTATCCTCGATTGTGAAAAATTGTTGTTTTTGGAAATAAAATCGGA
1 -GTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTTGGAAATAAAATCGGA
* * * * *
7258759 GTTGGAGTATCCCCGATTAAAGGAAAATTGGTG-TTTTGAAAATAAAACCGGG
1 GTTGGAGTATCCCCGATT-ATGAAAAATTGGTGTTTTTGGAAATAAAATCGGA
*
7258811 GTTGGAGTATCCCCGATTATGAACAATTG
1 GTTGGAGTATCCCCGATTATGAAAAATTG
7258840 AAAAACTTAA
Statistics
Matches: 213, Mismatches: 58, Indels: 43
0.68 0.18 0.14
Matches are distributed among these distances:
49 5 0.02
50 3 0.01
51 45 0.21
52 105 0.49
53 28 0.13
54 1 0.00
55 3 0.01
56 13 0.06
57 5 0.02
59 5 0.02
ACGTcount: A:0.31, C:0.12, G:0.28, T:0.29
Consensus pattern (52 bp):
GTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTTGGAAATAAAATCGGA
Found at i:7258621 original size:211 final size:211
Alignment explanation
Indices: 7258385--7258832 Score: 799
Period size: 211 Copynumber: 2.1 Consensus size: 211
7258375 TCGGAAATAA
** *
7258385 CGGGGTTGGAGTATCCCTAATTATGAGAAATCAATATTTTGGAAATAAAGCCGGGGTTG-GAGTA
1 CGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTGGAAATAAAGACGGGG-TGAGAGTA
7258449 TCCCCTCGGAGGTAACGACGTTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTATCCTCGATT
65 TCCCCTCGGAGGTAACGACGTTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTATCCTCGATT
7258514 GTGAAAAATTGGTGTTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGGAAAATTGG
130 GTGAAAAATTGGTGTTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGGAAAATTGG
*
7258579 TGTTTTGAAGATAAAAC
195 TGTTTTGAAAATAAAAC
*
7258596 CGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTGGAAATAAAGATGGGGTGAGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTGGAAATAAAGACGGGGTGAGAGTAT
** *
7258661 CCCCTCGGAGGTAACGGGGTTGGAGTATCCCCGATGAAATAATGAGGTTGGAGTATCCTCGATTG
66 CCCCTCGGAGGTAACGACGTTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTATCCTCGATTG
*
7258726 TGAAAAATTGTTGTTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGGAAAATTGGT
131 TGAAAAATTGGTGTTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGGAAAATTGGT
7258791 GTTTTGAAAATAAAAC
196 GTTTTGAAAATAAAAC
7258807 CGGGGTTGGAGTATCCCCGATTATGA
1 CGGGGTTGGAGTATCCCCGATTATGA
7258833 ACAATTGAAA
Statistics
Matches: 227, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
210 2 0.01
211 225 0.99
ACGTcount: A:0.31, C:0.13, G:0.28, T:0.28
Consensus pattern (211 bp):
CGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTGGAAATAAAGACGGGGTGAGAGTAT
CCCCTCGGAGGTAACGACGTTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTATCCTCGATTG
TGAAAAATTGGTGTTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGGAAAATTGGT
GTTTTGAAAATAAAAC
Found at i:7261266 original size:13 final size:13
Alignment explanation
Indices: 7261248--7261299 Score: 50
Period size: 13 Copynumber: 3.5 Consensus size: 13
7261238 AGCTTCGTAA
7261248 CGATACATTGTAT
1 CGATACATTGTAT
7261261 CGATACAAAACTTATGTAT
1 CGATAC---A-TT--GTAT
7261280 CGATACATTGTAT
1 CGATACATTGTAT
7261293 CGATACA
1 CGATACA
7261300 ATACTTATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
13 17 0.52
15 2 0.06
16 2 0.06
17 2 0.06
19 10 0.30
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:7261280 original size:19 final size:18
Alignment explanation
Indices: 7261256--7261318 Score: 73
Period size: 19 Copynumber: 3.7 Consensus size: 18
7261246 AACGATACAT
7261256 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
7261275 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
7261288 TGTATCGATACAATACTTA
1 TGTATCGATACAA-ACTTA
7261307 TGTATCGATACA
1 TGTATCGATACA
7261319 TTTTCTGTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.29
14 1 0.03
16 2 0.05
18 1 0.03
19 23 0.61
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:7261289 original size:32 final size:32
Alignment explanation
Indices: 7261248--7261320 Score: 137
Period size: 32 Copynumber: 2.3 Consensus size: 32
7261238 AGCTTCGTAA
7261248 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
*
7261280 CGATACATTGTATCGATACAATACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
7261312 CGATACATT
1 CGATACATT
7261321 TTCTGTTTGT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (32 bp):
CGATACATTGTATCGATACAAAACTTATGTAT
Found at i:7261347 original size:19 final size:19
Alignment explanation
Indices: 7261287--7261348 Score: 63
Period size: 19 Copynumber: 3.2 Consensus size: 19
7261277 TATCGATACA
7261287 TTGTATCGATACAATACT-T
1 TTGTATCGATACAA-ACTGT
* **
7261306 ATGTATCGATACATTTTCTGT
1 TTGTATCGATACA--AACTGT
7261327 TTGTATCGATACAAACTGT
1 TTGTATCGATACAAACTGT
7261346 TTG
1 TTG
7261349 AAGTTCAAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
19 19 0.56
20 2 0.06
21 13 0.38
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.44
Consensus pattern (19 bp):
TTGTATCGATACAAACTGT
Found at i:7261851 original size:19 final size:20
Alignment explanation
Indices: 7261827--7261883 Score: 80
Period size: 19 Copynumber: 2.9 Consensus size: 20
7261817 GTACCGATAT
**
7261827 ATTGTATCGATACATGTTC-
1 ATTGTATCGATACATGACCA
7261846 ATTGTATCGATACATGACCAA
1 ATTGTATCGATACATGACC-A
7261867 ATTGTATCGATACATGA
1 ATTGTATCGATACATGA
7261884 AACTGGCAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 17 0.50
21 17 0.50
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (20 bp):
ATTGTATCGATACATGACCA
Found at i:7264891 original size:2 final size:2
Alignment explanation
Indices: 7264884--7264910 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7264874 TAATATGAAA
7264884 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
7264911 CTTGGCCTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7266654 original size:13 final size:13
Alignment explanation
Indices: 7266636--7266661 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7266626 ATGACTTTGT
7266636 TTTTTCATTTAAG
1 TTTTTCATTTAAG
7266649 TTTTTCATTTAAG
1 TTTTTCATTTAAG
7266662 CTAGAGATCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.08, T:0.62
Consensus pattern (13 bp):
TTTTTCATTTAAG
Found at i:7267547 original size:2 final size:2
Alignment explanation
Indices: 7267540--7267570 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7267530 AAAATAAACA
7267540 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7267571 CACTGTCTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7269112 original size:69 final size:71
Alignment explanation
Indices: 7269014--7269147 Score: 154
Period size: 69 Copynumber: 1.9 Consensus size: 71
7269004 ACAAAACAAT
*
7269014 AATTTAAATTAATTTTTAAGAGTTATTTTAATTGAT-TT-GTATA-AT-TATTTTTAAAATAATA
1 AATTTAAATTAATATTTAAGAGTTATTTT-ATT-ATCTTAGTATATATATATTTTTAAAATAATA
7269075 ATATTTAA
64 ATATTTAA
* * *
7269083 AATTTAAATTTAATATTTATA-A-TTTTTTTATTATCTTATTATATATATATTTTTAAAATAGTA
1 AATTTAAA-TTAATATTTA-AGAGTTATTTTATTATCTTAGTATATATATATTTTTAAAATAATA
7269146 AT
64 AT
7269148 GATAATGTAT
Statistics
Matches: 55, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
67 2 0.04
68 5 0.09
69 18 0.33
70 12 0.22
71 18 0.33
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.54
Consensus pattern (71 bp):
AATTTAAATTAATATTTAAGAGTTATTTTATTATCTTAGTATATATATATTTTTAAAATAATAAT
ATTTAA
Found at i:7269369 original size:2 final size:2
Alignment explanation
Indices: 7269362--7269390 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7269352 CGTATACGTG
7269362 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7269391 GAGATGTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7272268 original size:27 final size:26
Alignment explanation
Indices: 7272198--7272269 Score: 66
Period size: 27 Copynumber: 2.9 Consensus size: 26
7272188 TTATAAATAA
7272198 ATTTAAAT-AAAATT-T-TTT-AATT
1 ATTTAAATAAAAATTATATTTAAATT
* *
7272220 A-TTAAATAATAATTCA-AATTAAATT
1 ATTTAAATAAAAATT-ATATTTAAATT
7272245 ACTTTAAATAAAAATTATATTTAAA
1 A-TTTAAATAAAAATTATATTTAAA
7272270 ATTTAATCTA
Statistics
Matches: 38, Mismatches: 4, Indels: 11
0.72 0.08 0.21
Matches are distributed among these distances:
21 6 0.16
22 6 0.16
24 2 0.05
25 5 0.13
26 1 0.03
27 18 0.47
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (26 bp):
ATTTAAATAAAAATTATATTTAAATT
Found at i:7276734 original size:21 final size:20
Alignment explanation
Indices: 7276700--7276738 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
7276690 CACATTTTTG
7276700 TCTAAATATATCGATACATT
1 TCTAAATATATCGATACATT
*
7276720 TCTAGAATGTATCGATACA
1 TCTA-AATATATCGATACA
7276739 AGGTCCCAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.36
Consensus pattern (20 bp):
TCTAAATATATCGATACATT
Found at i:7276838 original size:31 final size:32
Alignment explanation
Indices: 7276797--7276866 Score: 115
Period size: 31 Copynumber: 2.2 Consensus size: 32
7276787 AAACAGTAAC
*
7276797 TGTATTGATACATAAGTGTTG-ATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
7276828 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
*
7276860 TATATCG
1 TGTATCG
7276867 CTACGAAGCT
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
31 20 0.56
32 16 0.44
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.36
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:7276852 original size:19 final size:19
Alignment explanation
Indices: 7276797--7276858 Score: 66
Period size: 19 Copynumber: 3.6 Consensus size: 19
7276787 AAACAGTAAC
*
7276797 TGTATTGATACATAAGTGT
1 TGTATCGATACATAAGTGT
7276816 TG-ATCGATAC--AA----
1 TGTATCGATACATAAGTGT
7276828 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGTGT
7276847 TGTATCGATACA
1 TGTATCGATACA
7276859 ATATATCGCT
Statistics
Matches: 35, Mismatches: 1, Indels: 14
0.70 0.02 0.28
Matches are distributed among these distances:
12 2 0.06
13 8 0.23
15 2 0.06
16 2 0.06
18 7 0.20
19 14 0.40
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.35
Consensus pattern (19 bp):
TGTATCGATACATAAGTGT
Found at i:7279171 original size:26 final size:26
Alignment explanation
Indices: 7279142--7279209 Score: 136
Period size: 26 Copynumber: 2.6 Consensus size: 26
7279132 TTTATTCATC
7279142 GGGGACACTCCAACCCATTCCTCTGA
1 GGGGACACTCCAACCCATTCCTCTGA
7279168 GGGGACACTCCAACCCATTCCTCTGA
1 GGGGACACTCCAACCCATTCCTCTGA
7279194 GGGGACACTCCAACCC
1 GGGGACACTCCAACCC
7279210 CCTTTTCAAC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.24, C:0.40, G:0.21, T:0.16
Consensus pattern (26 bp):
GGGGACACTCCAACCCATTCCTCTGA
Found at i:7286524 original size:11 final size:12
Alignment explanation
Indices: 7286487--7286566 Score: 63
Period size: 13 Copynumber: 6.4 Consensus size: 12
7286477 TCAAAATAAC
*
7286487 AAAAAAGTCAAA
1 AAAAAAATCAAA
*
7286499 AGAAAAAGTACAAA
1 A-AAAAAAT-CAAA
*
7286513 AAAAAAATAAAA
1 AAAAAAATCAAA
*
7286525 CAAAAAAATCACA
1 -AAAAAAATCAAA
7286538 AAAAAAATGCAAA
1 AAAAAAAT-CAAA
**
7286551 AGCAAAAT-AAA
1 AAAAAAATCAAA
7286562 AAAAA
1 AAAAA
7286567 GGGTATAACA
Statistics
Matches: 55, Mismatches: 9, Indels: 9
0.75 0.12 0.12
Matches are distributed among these distances:
11 6 0.11
12 12 0.22
13 32 0.58
14 5 0.09
ACGTcount: A:0.78, C:0.09, G:0.06, T:0.07
Consensus pattern (12 bp):
AAAAAAATCAAA
Found at i:7288055 original size:96 final size:95
Alignment explanation
Indices: 7287925--7288305 Score: 342
Period size: 96 Copynumber: 4.0 Consensus size: 95
7287915 CCCCCGCAAG
* * * *
7287925 TCAGTAGCAATCTCTTCTAAAGCCTACATAAGTCGGTGGCAACCTCTTCTAAAGCCCACATGAA-
1 TCAGTGGCAACCTCTTCTAAAGCCCACATAAGTCGGTGGCAACC-CTTCTAAAGCCCACA-CAAG
* *
7287989 TCGGTGGCAACCCTTTCTAAATCCTACACAAAC
64 TCGGTGGCAACCCTTTCTAAAGCCCACAC-AAC
* * * * *
7288022 T-GGTGGCAACCTCTTCTAAAGCCCACATAAGTCGGTGGTAACCCCTCTAAAACCCACACAAGTT
1 TCAGTGGCAACCTCTTCTAAAGCCCACATAAGTCGGTGGCAACCCTTCTAAAGCCCACACAAGTC
*
7288086 GGTGGCAACCCTTCTCTAAAGCCCACACAAG
66 GGTGGCAACCCTT-TCTAAAGCCCACACAAC
*** * *
7288117 TCAGTGGCAACC-CTTCTCAAAGCCCACGCGAGTCGGTAGCAACCCTTTCTAAAGCCTACACAAG
1 TCAGTGGCAACCTCTTCT-AAAGCCCACATAAGTCGGTGGCAACCC-TTCTAAAGCCCACACAAG
* * * *
7288181 TCGGTGGTAACCTTTTCTAAAGCCCACATAAG
64 TCGGTGGCAACCCTTTCTAAAGCCCACACAAC
** * * * * * * * * *
7288213 TTGGTGG-TACCCCTTCCAAGGCTCACAAAAGTCTGTGG-TACCCTTTCTAAGGCCCACACAAGT
1 TCAGTGGCAACCTCTTCTAAAGCCCACATAAGTCGGTGGCAACCC-TTCTAAAGCCCACACAAGT
* *
7288276 CAGTGGCAA-CCTTCTCAAAAGCCCACACAA
65 CGGTGGCAACCCTT-TCTAAAGCCCACACAA
7288306 GCCGGTGGCA
Statistics
Matches: 233, Mismatches: 44, Indels: 17
0.79 0.15 0.06
Matches are distributed among these distances:
93 3 0.01
94 45 0.19
95 52 0.22
96 105 0.45
97 28 0.12
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.22
Consensus pattern (95 bp):
TCAGTGGCAACCTCTTCTAAAGCCCACATAAGTCGGTGGCAACCCTTCTAAAGCCCACACAAGTC
GGTGGCAACCCTTTCTAAAGCCCACACAAC
Found at i:7288161 original size:160 final size:158
Alignment explanation
Indices: 7287939--7288303 Score: 461
Period size: 160 Copynumber: 2.3 Consensus size: 158
7287929 TAGCAATCTC
* * * * *
7287939 TTCTAAAGCCTACATAAGTCGGTGGCAACCTCTTCT-AAAGCCCACATGAATCGGTGGCAACCCT
1 TTCTAAAGCCCACACAAGTCAGTGGCAACC-CTTCTCAAAGCCCACACGAATCGGTAGCAACCCT
*
7288003 TTCTAAATCCTACACAAACT-GGTGGCAACCTCTTCTAAAGCCCACATAAGTCGGTGGTAACCCC
65 TTCTAAAGCCTACAC-AACTCGGTGGCAACCTCTTCTAAAGCCCACATAAGTCGGTGGT-ACCCC
* *
7288067 -TCTAAAACCCACACAAGT-TGGTGGCAACCCT
128 TTCCAAAACCCACAAAAGTCT-GTGG-AACCCT
* *
7288098 TCTCTAAAGCCCACACAAGTCAGTGGCAACCCTTCTCAAAGCCCACGCGAGTCGGTAGCAACCCT
1 T-TCTAAAGCCCACACAAGTCAGTGGCAACCCTTCTCAAAGCCCACACGAATCGGTAGCAACCCT
* * * *
7288163 TTCTAAAGCCTACACAAGTCGGTGGTAACCTTTTCTAAAGCCCACATAAGTTGGTGGTACCCCTT
65 TTCTAAAGCCTACACAACTCGGTGGCAACCTCTTCTAAAGCCCACATAAGTCGGTGGTACCCCTT
** * *
7288228 CCAAGGCTCACAAAAGTCTGTGGTACCCT
130 CCAAAACCCACAAAAGTCTGTGGAACCCT
*
7288257 TTCTAAGGCCCACACAAGTCAGTGGCAA-CCTTCTCAAAAGCCCACAC
1 TTCTAAAGCCCACACAAGTCAGTGGCAACCCTTCTC-AAAGCCCACAC
7288304 AAGCCGGTGG
Statistics
Matches: 180, Mismatches: 20, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
157 7 0.04
158 36 0.20
159 20 0.11
160 116 0.64
161 1 0.01
ACGTcount: A:0.29, C:0.32, G:0.18, T:0.22
Consensus pattern (158 bp):
TTCTAAAGCCCACACAAGTCAGTGGCAACCCTTCTCAAAGCCCACACGAATCGGTAGCAACCCTT
TCTAAAGCCTACACAACTCGGTGGCAACCTCTTCTAAAGCCCACATAAGTCGGTGGTACCCCTTC
CAAAACCCACAAAAGTCTGTGGAACCCT
Found at i:7288254 original size:31 final size:31
Alignment explanation
Indices: 7288202--7288281 Score: 88
Period size: 31 Copynumber: 2.6 Consensus size: 31
7288192 CTTTTCTAAA
* **
7288202 GCCCACATAAGTTGGTGGTACCCCTTCCAAG
1 GCCCACAAAAGTCAGTGGTACCCCTTCCAAG
* * * *
7288233 GCTCACAAAAGTCTGTGGTACCCTTTCTAAG
1 GCCCACAAAAGTCAGTGGTACCCCTTCCAAG
*
7288264 GCCCACACAAGTCAGTGG
1 GCCCACAAAAGTCAGTGG
7288282 CAACCTTCTC
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.23
Consensus pattern (31 bp):
GCCCACAAAAGTCAGTGGTACCCCTTCCAAG
Found at i:7288314 original size:32 final size:32
Alignment explanation
Indices: 7287940--7288315 Score: 306
Period size: 32 Copynumber: 11.8 Consensus size: 32
7287930 AGCAATCTCT
* *
7287940 TCTAAAGCCTACATAAGTCGGTGGCAACC-TC
1 TCTAAAGCCCACACAAGTCGGTGGCAACCTTC
*
7287971 TTCTAAAGCCCACATGAA-TCGGTGGCAACCCTT-
1 -TCTAAAGCCCACA-CAAGTCGGTGGCAA-CCTTC
* * *
7288004 TCTAAATCCTACACAA-ACTGGTGGCAACC-TC
1 TCTAAAGCCCACACAAGTC-GGTGGCAACCTTC
* * *
7288035 TTCTAAAGCCCACATAAGTCGGTGGTAACC-CC
1 -TCTAAAGCCCACACAAGTCGGTGGCAACCTTC
* *
7288067 TCTAAAACCCACACAAGTTGGTGGCAACCCTTC
1 TCTAAAGCCCACACAAGTCGGTGGCAA-CCTTC
*
7288100 TCTAAAGCCCACACAAGTCAGTGGCAACCCTTC
1 TCTAAAGCCCACACAAGTCGGTGGCAA-CCTTC
* * *
7288133 TC-AAAGCCCACGCGAGTCGGTAGCAACCCTT-
1 TCTAAAGCCCACACAAGTCGGTGGCAA-CCTTC
* * *
7288164 TCTAAAGCCTACACAAGTCGGTGGTAACCTTT
1 TCTAAAGCCCACACAAGTCGGTGGCAACCTTC
* * * *
7288196 TCTAAAGCCCACATAAGTTGGTGGTACCCCTTC
1 TCTAAAGCCCACACAAGTCGGTGGCA-ACCTTC
* * * * * *
7288229 -C-AAGGCTCACAAAAGTCTGTGGTACCCTT-
1 TCTAAAGCCCACACAAGTCGGTGGCAACCTTC
* *
7288258 TCTAAGGCCCACACAAGTCAGTGGCAACCTTC
1 TCTAAAGCCCACACAAGTCGGTGGCAACCTTC
* *
7288290 TCAAAAGCCCACACAAGCCGGTGGCA
1 TCTAAAGCCCACACAAGTCGGTGGCA
7288316 TCTCTTTCTA
Statistics
Matches: 281, Mismatches: 48, Indels: 30
0.78 0.13 0.08
Matches are distributed among these distances:
30 7 0.02
31 75 0.27
32 156 0.56
33 42 0.15
34 1 0.00
ACGTcount: A:0.29, C:0.32, G:0.18, T:0.21
Consensus pattern (32 bp):
TCTAAAGCCCACACAAGTCGGTGGCAACCTTC
Found at i:7289167 original size:21 final size:21
Alignment explanation
Indices: 7289137--7289190 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
7289127 TTTTATAATT
*
7289137 TGTATCGATATAAACAGTAAA
1 TGTATCGATATAAAAAGTAAA
* *
7289158 TGTATTGATACAAAAAGTAAA
1 TGTATCGATATAAAAAGTAAA
7289179 TGTATCGATATA
1 TGTATCGATATA
7289191 TGGTTAAAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.46, C:0.07, G:0.15, T:0.31
Consensus pattern (21 bp):
TGTATCGATATAAAAAGTAAA
Found at i:7298230 original size:19 final size:20
Alignment explanation
Indices: 7298186--7298236 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
7298176 CTGCCAGTTT
**
7298186 CATGTATCGATACAATTGTC
1 CATGTATCGATACAATTGAA
7298206 CATGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGAA
7298225 CATGTATCGATA
1 CATGTATCGATA
7298237 TATTGTATCG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 14 0.48
20 15 0.52
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:7298249 original size:32 final size:33
Alignment explanation
Indices: 7298208--7298269 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 33
7298198 CAATTGTCCA
*
7298208 TGTATCGATACAATG-A-ACATGTATCGATATAT
1 TGTATCGATACAAAGCATA-ATGTATCGATATAT
7298240 TGTATCGATACAAAGCATAATGTATCGATA
1 TGTATCGATACAAAGCATAATGTATCGATA
7298270 CATCTGGGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
32 14 0.52
33 12 0.44
34 1 0.04
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (33 bp):
TGTATCGATACAAAGCATAATGTATCGATATAT
Found at i:7305522 original size:27 final size:27
Alignment explanation
Indices: 7305481--7305905 Score: 485
Period size: 27 Copynumber: 15.5 Consensus size: 27
7305471 CACCTAAGTT
7305481 CGTGGCATCCC-TTTAAGTCCACAACTC
1 CGTGGCA-CCCTTTTAAGTCCACAACTC
* *
7305508 CATGGCGCCCTTTTAAAGTCCACAACTC
1 CGTGGCACCCTTTT-AAGTCCACAACTC
* * *
7305536 CATTGCACCCTCTTAAGTCCACAACTC
1 CGTGGCACCCTTTTAAGTCCACAACTC
*
7305563 CGTGGCACCTTTTTAAGTCCACAACTC
1 CGTGGCACCCTTTTAAGTCCACAACTC
* *
7305590 TGTGGCACCCCTTTTTAAGTCCACAACTT
1 CGTGGCA-CCC-TTTTAAGTCCACAACTC
* * *
7305619 CGTGGTAGCCTTTAAAGTCCACAACTC
1 CGTGGCACCCTTTTAAGTCCACAACTC
*
7305646 CGTGGCAGCCCTTTTAAAGTCAACAACTC
1 CGTGGCA-CCCTTTT-AAGTCCACAACTC
*
7305675 TGTGGCACCCTTTTAAGTCCACAACTC
1 CGTGGCACCCTTTTAAGTCCACAACTC
** * * *
7305702 TATGGCACCTTTTTAGGCCCACAACTC
1 CGTGGCACCCTTTTAAGTCCACAACTC
* * ** *
7305729 TGTGGTACATTTTTAAAGTCCACAAGTC
1 CGTGGCACCCTTTT-AAGTCCACAACTC
7305757 CGTGGCACCCTTTTAAGTCCACAACTC
1 CGTGGCACCCTTTTAAGTCCACAACTC
*
7305784 CGTGGCA-CCTTTTAAAGTCTACAACTC
1 CGTGGCACCCTTTT-AAGTCCACAACTC
* *
7305811 CGTGGCACCCTTTAAAGTCCACGACTC
1 CGTGGCACCCTTTTAAGTCCACAACTC
*
7305838 CGTGGCACCCTTTTAAAGTCCATAACTC
1 CGTGGCACCCTTTT-AAGTCCACAACTC
** *
7305866 TATGACACCCTTTTAAGTCCACAACTC
1 CGTGGCACCCTTTTAAGTCCACAACTC
7305893 CGTGGCACCCTTT
1 CGTGGCACCCTTT
7305906 CAAAGCCCAC
Statistics
Matches: 336, Mismatches: 52, Indels: 20
0.82 0.13 0.05
Matches are distributed among these distances:
26 9 0.03
27 201 0.60
28 87 0.26
29 39 0.12
ACGTcount: A:0.24, C:0.33, G:0.15, T:0.28
Consensus pattern (27 bp):
CGTGGCACCCTTTTAAGTCCACAACTC
Found at i:7305556 original size:55 final size:55
Alignment explanation
Indices: 7305481--7305916 Score: 513
Period size: 55 Copynumber: 7.9 Consensus size: 55
7305471 CACCTAAGTT
* *
7305481 CGTGGCATCCC-TTTAAGTCCACAACTCCATGGCGCCCTTTTAAAGTCCACAACTC
1 CGTGGCA-CCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTC
* * * *
7305536 CATTGCACCCTCTTAAGTCCACAACTCCGTGGCA-CCTTTTTAAGTCCACAACTC
1 CGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTC
* * * *
7305590 TGTGGCACCCCTTTTTAAGTCCACAACTTCGTGGTAGCC-TTTAAAGTCCACAACTC
1 CGTGGCA-CCC-TTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTC
* *
7305646 CGTGGCAGCCCTTTTAAAGTCAACAACTCTGTGGCACCCTTTT-AAGTCCACAACTC
1 CGTGGCA-CCCTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTC
** * * * * * ** *
7305702 TATGGCACCTTTTTAGGCCCACAACTCTGTGGTACATTTTTAAAGTCCACAAGTC
1 CGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTC
*
7305757 CGTGGCACCCTTTTAAGTCCACAACTCCGTGGCA-CCTTTTAAAGTCTACAACTC
1 CGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTC
* * *
7305811 CGTGGCACCCTTTAAAGTCCACGACTCCGTGGCACCCTTTTAAAGTCCATAACTC
1 CGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTC
** * * *
7305866 TATGACACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTCAAAGCCCACA
1 CGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACA
7305917 CAAGTCGATG
Statistics
Matches: 320, Mismatches: 53, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
54 95 0.30
55 138 0.43
56 82 0.26
57 5 0.02
ACGTcount: A:0.25, C:0.33, G:0.15, T:0.28
Consensus pattern (55 bp):
CGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGTCCACAACTC
Found at i:7305767 original size:82 final size:82
Alignment explanation
Indices: 7305481--7305916 Score: 497
Period size: 82 Copynumber: 5.3 Consensus size: 82
7305471 CACCTAAGTT
* * * *
7305481 CGTGGCATCCC-TTT-AAGTCCACAACTCCATGGCGCCCTTTTAAAGTCCACAACTCCATTGCAC
1 CGTGGCA-CCCTTTTAAAGTCCACAACTCCGTGGCACCCTTTT-AAGTCCACAACTCTATGGCAC
*
7305544 CCTCTTAAGTCCACAACTC
64 CCTTTTAAGTCCACAACTC
* * * *
7305563 CGTGGCA-CCTTTTTAAGTCCACAACTCTGTGGCACCCCTTTTTAAGTCCACAACT-TCGTGGTA
1 CGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCA-CCC-TTTTAAGTCCACAACTCT-ATGGCA
* *
7305626 GCCTTTAAAGTCCACAACTC
63 CCCTTTTAAGTCCACAACTC
* *
7305646 CGTGGCAGCCCTTTTAAAGTCAACAACTCTGTGGCACCCTTTTAAGTCCACAACTCTATGGCACC
1 CGTGGCA-CCCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTATGGCACC
* * *
7305711 TTTTTAGGCCCACAACTC
65 CTTTTAAGTCCACAACTC
* * ** * **
7305729 TGTGGTACATTTTTAAAGTCCACAAGTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCA-CC
1 CGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTATGGCACCC
*
7305793 TTTTAAAGTCTACAACTC
66 TTTT-AAGTCCACAACTC
* * *
7305811 CGTGGCACCC-TTTAAAGTCCACGACTCCGTGGCACCCTTTTAAAGTCCATAACTCTATGACACC
1 CGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCCTTTT-AAGTCCACAACTCTATGGCACC
7305875 CTTTTAAGTCCACAACTC
65 CTTTTAAGTCCACAACTC
* *
7305893 CGTGGCACCCTTTCAAAGCCCACA
1 CGTGGCACCCTTTTAAAGTCCACA
7305917 CAAGTCGATG
Statistics
Matches: 296, Mismatches: 46, Indels: 23
0.81 0.13 0.06
Matches are distributed among these distances:
80 2 0.01
81 37 0.12
82 126 0.43
83 98 0.33
84 8 0.03
85 25 0.08
ACGTcount: A:0.25, C:0.33, G:0.15, T:0.28
Consensus pattern (82 bp):
CGTGGCACCCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTATGGCACCC
TTTTAAGTCCACAACTC
Found at i:7305809 original size:109 final size:108
Alignment explanation
Indices: 7305517--7305916 Score: 466
Period size: 109 Copynumber: 3.6 Consensus size: 108
7305507 CCATGGCGCC
* * *
7305517 CTTTTAAAGTCCACAACTCCATTGCACCCTCTTAAGTCCACAACTCCGTGGCA-CCTTTTTAAGT
1 CTTTTAAAGTCCACAACTCCATGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGT
7305581 CCACAACTCTGTGGCACCCCTTTTTAAGTCCACAACT-TCGTGGTA
66 CCACAACTCTGTGGCA--CCTTTTTAAGTCCACAACTCT-GTGGTA
* * * *
7305626 GCCTTTAAAGTCCACAACTCCGTGGCAGCCCTTTTAAAGTCAACAACTCTGTGGCACCCTTTT-A
1 -CTTTTAAAGTCCACAACTCCATGGCA-CCCTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAA
* * *
7305690 AGTCCACAACTCTATGGCACCTTTTTAGGCCCACAACTCTGTGGTA
63 AGTCCACAACTCTGTGGCACCTTTTTAAGTCCACAACTCTGTGGTA
* *
7305736 CATTTTTAAAGTCCACAAGTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCA-CCTTTTAAA
1 C--TTTTAAAGTCCACAACTCCATGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAA
* * * * * * *
7305800 GTCTACAACTCCGTGGCACCCTTTAAAGTCCACGACTCCGTGGCA
64 GTCCACAACTCTGTGGCACCTTTTTAAGTCCACAACTCTGTGGTA
* * * *
7305845 CCCTTTTAAAGTCCATAACTCTATGACACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTCAAA
1 --CTTTTAAAGTCCACAACTCCATGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAA
*
7305910 GCCCACA
64 GTCCACA
7305917 CAAGTCGATG
Statistics
Matches: 249, Mismatches: 31, Indels: 20
0.83 0.10 0.07
Matches are distributed among these distances:
108 6 0.02
109 103 0.41
110 66 0.27
111 31 0.12
112 37 0.15
113 6 0.02
ACGTcount: A:0.25, C:0.33, G:0.14, T:0.28
Consensus pattern (108 bp):
CTTTTAAAGTCCACAACTCCATGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGT
CCACAACTCTGTGGCACCTTTTTAAGTCCACAACTCTGTGGTA
Found at i:7305943 original size:32 final size:31
Alignment explanation
Indices: 7305901--7306008 Score: 107
Period size: 32 Copynumber: 3.5 Consensus size: 31
7305891 TCCGTGGCAC
7305901 CCTTTCAAAGCCCACACAAGTCGATGGTAACT
1 CCTTTCAAAGCCCACACAAGTCGATGG-AACT
* * * * *
7305933 CTTTTTAAAG-CC-TACAAGT-TAGTGGCAC-
1 CCTTTCAAAGCCCACACAAGTCGA-TGGAACT
*
7305961 CCTTTCAAAGCCCACACAAGTCGGTGGCAACT
1 CCTTTCAAAGCCCACACAAGTCGATGG-AACT
7305993 CCTTTCAAAGCCCACA
1 CCTTTCAAAGCCCACA
7306009 AGTTAGTGGC
Statistics
Matches: 59, Mismatches: 11, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
28 8 0.14
29 5 0.08
30 18 0.31
31 4 0.07
32 24 0.41
ACGTcount: A:0.30, C:0.31, G:0.16, T:0.23
Consensus pattern (31 bp):
CCTTTCAAAGCCCACACAAGTCGATGGAACT
Found at i:7305972 original size:28 final size:28
Alignment explanation
Indices: 7305939--7306577 Score: 778
Period size: 28 Copynumber: 22.6 Consensus size: 28
7305929 AACTCTTTTT
* * * *
7305939 AAAGCCTACAAGTTAGTGGCACCCTTTC
1 AAAGCCCACAAGTCAGTGGCATCATTTC
* *
7305967 AAAGCCCACACAAGTCGGTGGCAACTCCTTTC
1 AAAG-CC-CACAAGTCAGTGGC-A-TCATTTC
* *
7305999 AAAGCCCACAAGTTAGTGGCATCATTTT
1 AAAGCCCACAAGTCAGTGGCATCATTTC
*
7306027 AAAGCCCACAAGTCAGTGGCACCATTTC
1 AAAGCCCACAAGTCAGTGGCATCATTTC
7306055 AAAGCCCACAAGTCAGTGGCATCATTTC
1 AAAGCCCACAAGTCAGTGGCATCATTTC
* * * *
7306083 AAAGCTCACAAGTCAATGGCATCCTTTT
1 AAAGCCCACAAGTCAGTGGCATCATTTC
*
7306111 AAAGCCCACAAGTCCGTGGCATCATTTC
1 AAAGCCCACAAGTCAGTGGCATCATTTC
* *
7306139 AAAGCCCACAAGTCAGTGGCACCATTTT
1 AAAGCCCACAAGTCAGTGGCATCATTTC
* * *
7306167 AAAGCCCATAAGTCAATTGCATCATTTC
1 AAAGCCCACAAGTCAGTGGCATCATTTC
* *
7306195 AAAGCCCACAAGTCAATGGCATCTTTTC
1 AAAGCCCACAAGTCAGTGGCATCATTTC
* *
7306223 GAAGCCCACAAGTCTGTGGCATCATTTC
1 AAAGCCCACAAGTCAGTGGCATCATTTC
* * * *
7306251 AAAGCTCACAAGTCTGTGGCACCATTTT
1 AAAGCCCACAAGTCAGTGGCATCATTTC
* *
7306279 AAAGCCCACAAGTCATTGGCATCCTTTC
1 AAAGCCCACAAGTCAGTGGCATCATTTC
*
7306307 AAAGCCCACAAGTCTGTGGCATCATTTC
1 AAAGCCCACAAGTCAGTGGCATCATTTC
* *
7306335 AAAGCCCATAAGTCAGTGGCATCCTTTC
1 AAAGCCCACAAGTCAGTGGCATCATTTC
* *
7306363 AAAGCCCACAAGTTAGTGGCATCCTTTC
1 AAAGCCCACAAGTCAGTGGCATCATTTC
* * * *
7306391 AAAGCCCAAAAGTTAGTGGCATTATTTT
1 AAAGCCCACAAGTCAGTGGCATCATTTC
*
7306419 AAAGACCACAAGTCAGTGGCATCATTTC
1 AAAGCCCACAAGTCAGTGGCATCATTTC
*
7306447 AAGGCCCACAAGTCAGTGGCA-CTATTTC
1 AAAGCCCACAAGTCAGTGGCATC-ATTTC
*
7306475 AAAGCCCACAAGTCAATGGCATCATTTC
1 AAAGCCCACAAGTCAGTGGCATCATTTC
* *
7306503 CAAGCCCATAAGTCAGTGGCA-CTATTTC
1 AAAGCCCACAAGTCAGTGGCATC-ATTTC
* * *
7306531 AAAGCCCACAAGTTAGTGGCATTCTTTTA
1 AAAGCCCACAAGTCAGTGGCA-TCATTTC
*
7306560 AAAGCCAACAAGTCAGTG
1 AAAGCCCACAAGTCAGTG
7306578 AGAACCTTTT
Statistics
Matches: 525, Mismatches: 77, Indels: 17
0.85 0.12 0.03
Matches are distributed among these distances:
27 2 0.00
28 463 0.88
29 23 0.04
30 24 0.05
31 3 0.01
32 10 0.02
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.24
Consensus pattern (28 bp):
AAAGCCCACAAGTCAGTGGCATCATTTC
Found at i:7306120 original size:84 final size:84
Alignment explanation
Indices: 7305743--7306577 Score: 747
Period size: 84 Copynumber: 9.9 Consensus size: 84
7305733 GTACATTTTT
* * * * * * * * *
7305743 AAAGTCCACAAGTCCGTGGCACCCTTTT-AAGTCCACAACTCCGTGGCACC-TTTTAAAGTCTAC
1 AAAGCCCACAAGTCAGTGGCATCCTTTTAAAGCCCACAAGTCAGTGGCACCATTTCAAAGCCCAC
* * * *
7305806 AACTCCGTGGCACCCTTT-
66 AAGTCAGTGGCATCATTTC
* * * * * * * * * * * *
7305824 AAAGTCCACGACTCCGTGGCACCCTTTTAAAGTCCATAACTCTA-TGACACCCTTT-TAAGTCCA
1 AAAGCCCACAAGTCAGTGGCATCCTTTTAAAGCCCACAAGTC-AGTGGCACCATTTCAAAGCCCA
* * * *
7305887 CAACTCCGTGGCACCCTTTC
65 CAAGTCAGTGGCATCATTTC
* * * * *
7305907 AAAGCCCACACAAGTC-GATGGTAACTCTTTTTAAAGCCTACAAGTTAGTGGCACCCTTTCAAAG
1 AAAG-CC-CACAAGTCAG-TGG-CA-TCCTTTTAAAGCCCACAAGTCAGTGGCACCATTTCAAAG
* *
7305971 CCCACACAAGTCGGTGGCAACTCCTTTC
61 -CC-CACAAGTCAGTGGC-A-TCATTTC
* *
7305999 AAAGCCCACAAGTTAGTGGCATCATTTTAAAGCCCACAAGTCAGTGGCACCATTTCAAAGCCCAC
1 AAAGCCCACAAGTCAGTGGCATCCTTTTAAAGCCCACAAGTCAGTGGCACCATTTCAAAGCCCAC
7306064 AAGTCAGTGGCATCATTTC
66 AAGTCAGTGGCATCATTTC
* * * *
7306083 AAAGCTCACAAGTCAATGGCATCCTTTTAAAGCCCACAAGTCCGTGGCATCATTTCAAAGCCCAC
1 AAAGCCCACAAGTCAGTGGCATCCTTTTAAAGCCCACAAGTCAGTGGCACCATTTCAAAGCCCAC
* *
7306148 AAGTCAGTGGCACCATTTT
66 AAGTCAGTGGCATCATTTC
* * * * * * * * *
7306167 AAAGCCCATAAGTCAATTGCATCATTTCAAAGCCCACAAGTCAATGGCATCTTTTCGAAGCCCAC
1 AAAGCCCACAAGTCAGTGGCATCCTTTTAAAGCCCACAAGTCAGTGGCACCATTTCAAAGCCCAC
*
7306232 AAGTCTGTGGCATCATTTC
66 AAGTCAGTGGCATCATTTC
* * *
7306251 AAAGCTCACAAGTCTGTGGCA-CCATTTTAAAGCCCACAAGTCATTGGCATCC-TTTCAAAGCCC
1 AAAGCCCACAAGTCAGTGGCATCC-TTTTAAAGCCCACAAGTCAGTGGCA-CCATTTCAAAGCCC
*
7306314 ACAAGTCTGTGGCATCATTTC
64 ACAAGTCAGTGGCATCATTTC
* * *
7306335 AAAGCCCATAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTTAGTGGCATCC-TTTCAAAGCCCA
1 AAAGCCCACAAGTCAGTGGCATCCTTTTAAAGCCCACAAGTCAGTGGCA-CCATTTCAAAGCCCA
* * * *
7306399 AAAGTTAGTGGCATTATTTT
65 CAAGTCAGTGGCATCATTTC
* * * * *
7306419 AAAGACCACAAGTCAGTGGCATCATTTCAAGGCCCACAAGTCAGTGGCACTATTTCAAAGCCCAC
1 AAAGCCCACAAGTCAGTGGCATCCTTTTAAAGCCCACAAGTCAGTGGCACCATTTCAAAGCCCAC
*
7306484 AAGTCAATGGCATCATTTC
66 AAGTCAGTGGCATCATTTC
* * * * * *
7306503 CAAGCCCATAAGTCAGTGGCA--CTATTTCAAAGCCCACAAGTTAGTGGCATTCTTTTAAAAGCC
1 AAAGCCCACAAGTCAGTGGCATCCT-TTT-AAAGCCCACAAGTCAGTGGCA-CCATTTCAAAGCC
*
7306566 AACAAGTCAGTG
63 CACAAGTCAGTG
7306578 AGAACCTTTT
Statistics
Matches: 634, Mismatches: 97, Indels: 42
0.82 0.13 0.05
Matches are distributed among these distances:
81 26 0.04
82 44 0.07
83 11 0.02
84 404 0.64
85 32 0.05
86 15 0.02
87 26 0.04
88 38 0.06
89 2 0.00
90 22 0.03
91 4 0.01
92 10 0.02
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.25
Consensus pattern (84 bp):
AAAGCCCACAAGTCAGTGGCATCCTTTTAAAGCCCACAAGTCAGTGGCACCATTTCAAAGCCCAC
AAGTCAGTGGCATCATTTC
Found at i:7313649 original size:6 final size:6
Alignment explanation
Indices: 7313640--7313718 Score: 63
Period size: 7 Copynumber: 12.7 Consensus size: 6
7313630 AATTTAAATT
* ** *
7313640 ATTTTA ATTTTTA ATTTTTA ATTTTTA ATTTTTT ATAAGTA AATTTA A-TTTA
1 ATTTTA A-TTTTA A-TTTTA A-TTTTA A-TTTTA AT-TTTA ATTTTA ATTTTA
7313692 A-TTTA ATTTTA ATTTTA ATTTTA ATTT
1 ATTTTA ATTTTA ATTTTA ATTTTA ATTT
7313719 ATTAAATTAA
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
5 10 0.16
6 25 0.40
7 28 0.44
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.65
Consensus pattern (6 bp):
ATTTTA
Found at i:7313653 original size:7 final size:7
Alignment explanation
Indices: 7313641--7313672 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
7313631 ATTTAAATTA
7313641 TTTTAAT
1 TTTTAAT
7313648 TTTTAAT
1 TTTTAAT
7313655 TTTTAAT
1 TTTTAAT
7313662 TTTTAAT
1 TTTTAAT
7313669 TTTT
1 TTTT
7313673 TATAAGTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (7 bp):
TTTTAAT
Found at i:7313691 original size:5 final size:5
Alignment explanation
Indices: 7313681--7313731 Score: 52
Period size: 5 Copynumber: 10.0 Consensus size: 5
7313671 TTTATAAGTA
*
7313681 AATTT AATTT AATTT AATTTT AATTTT AATTTT AATTT -A-TT AAATT
1 AATTT AATTT AATTT AA-TTT AA-TTT AA-TTT AATTT AATTT AATTT
7313727 AATTT
1 AATTT
7313732 TTGAGTTATA
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
3 2 0.05
4 2 0.05
5 21 0.50
6 17 0.40
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
AATTT
Found at i:7314129 original size:2 final size:2
Alignment explanation
Indices: 7314122--7314158 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
7314112 CCATTTAGCT
7314122 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7314159 GGTCAAGATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7317079 original size:26 final size:26
Alignment explanation
Indices: 7317042--7317118 Score: 109
Period size: 26 Copynumber: 3.0 Consensus size: 26
7317032 TATAGAGAAA
*
7317042 AGATTGATAAAGTTTAACTTTATTTG
1 AGATTGATAAAGTTTAACTTTATTTC
* *
7317068 GGATTGATAAAGTTTAACTTTATCTC
1 AGATTGATAAAGTTTAACTTTATTTC
* *
7317094 AGATTAATAAAGTTCAACTTTATTT
1 AGATTGATAAAGTTTAACTTTATTT
7317119 AGAATTCTAG
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.35, C:0.08, G:0.13, T:0.44
Consensus pattern (26 bp):
AGATTGATAAAGTTTAACTTTATTTC
Found at i:7327242 original size:1 final size:1
Alignment explanation
Indices: 7327232--7327321 Score: 72
Period size: 1 Copynumber: 90.0 Consensus size: 1
7327222 TGGCAATTGG
* * * ** * * * **
7327232 AAAAAGAAAAAAACAAAACAAAAAAAAAAGGAAAAAGAAAAAAAAACAAAACAAAAAAAAGGAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
7327297 AAGAAAAAAAAAACAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
7327322 GTGAAGATTT
Statistics
Matches: 69, Mismatches: 20, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 69 1.00
ACGTcount: A:0.87, C:0.06, G:0.08, T:0.00
Consensus pattern (1 bp):
A
Found at i:7327321 original size:31 final size:31
Alignment explanation
Indices: 7327230--7327321 Score: 143
Period size: 31 Copynumber: 3.0 Consensus size: 31
7327220 CATGGCAATT
*
7327230 GGAAAAAGAAAAAAACAAA-ACAAAAAAAAAA
1 GGAAAAAGAAAAAAA-AAACAAAAAAAAAAAA
7327261 GGAAAAAG-AAAAAAAAACAAAACAAAAAAAA
1 GGAAAAAGAAAAAAAAAACAAAA-AAAAAAAA
7327292 GGAAAAAGAAAAAAAAAACAAAAAAAAAAA
1 GGAAAAAGAAAAAAAAAACAAAAAAAAAAA
7327322 GTGAAGATTT
Statistics
Matches: 57, Mismatches: 1, Indels: 6
0.89 0.02 0.09
Matches are distributed among these distances:
29 3 0.05
30 9 0.16
31 31 0.54
32 14 0.25
ACGTcount: A:0.85, C:0.05, G:0.10, T:0.00
Consensus pattern (31 bp):
GGAAAAAGAAAAAAAAAACAAAAAAAAAAAA
Found at i:7331969 original size:26 final size:26
Alignment explanation
Indices: 7331940--7332060 Score: 145
Period size: 26 Copynumber: 4.7 Consensus size: 26
7331930 GATAAGATAT
*
7331940 ATAAAGTTTAACTTTATCTAGGTTTA
1 ATAAAGTTTAACTTTATCTAGGATTA
*
7331966 ATAAAGTTTAACGTTATCT-GAGATTA
1 ATAAAGTTTAACTTTATCTAG-GATTA
* * * *
7331992 ATAAAATTCAACTTTATCTAGGAGTG
1 ATAAAGTTTAACTTTATCTAGGATTA
* *
7332018 ATAAAGTTTAACTTTATTTGGGATTA
1 ATAAAGTTTAACTTTATCTAGGATTA
*
7332044 ATAAAGTTCAACTTTAT
1 ATAAAGTTTAACTTTAT
7332061 TTGGATTTTA
Statistics
Matches: 79, Mismatches: 14, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
25 1 0.01
26 77 0.97
27 1 0.01
ACGTcount: A:0.37, C:0.08, G:0.13, T:0.41
Consensus pattern (26 bp):
ATAAAGTTTAACTTTATCTAGGATTA
Found at i:7332011 original size:52 final size:52
Alignment explanation
Indices: 7331940--7332060 Score: 170
Period size: 52 Copynumber: 2.3 Consensus size: 52
7331930 GATAAGATAT
* **
7331940 ATAAAGTTTAACTTTATCTAGGTTTAATAAAGTTTAACGTTATCTGAGATTA
1 ATAAAGTTCAACTTTATCTAGGAGTAATAAAGTTTAACGTTATCTGAGATTA
* * * * *
7331992 ATAAAATTCAACTTTATCTAGGAGTGATAAAGTTTAACTTTATTTGGGATTA
1 ATAAAGTTCAACTTTATCTAGGAGTAATAAAGTTTAACGTTATCTGAGATTA
7332044 ATAAAGTTCAACTTTAT
1 ATAAAGTTCAACTTTAT
7332061 TTGGATTTTA
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
52 60 1.00
ACGTcount: A:0.37, C:0.08, G:0.13, T:0.41
Consensus pattern (52 bp):
ATAAAGTTCAACTTTATCTAGGAGTAATAAAGTTTAACGTTATCTGAGATTA
Found at i:7344696 original size:21 final size:21
Alignment explanation
Indices: 7344663--7344702 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7344653 AACTAATTAA
7344663 AAATTTATATTA-TAACTTAT
1 AAATTTATATTATTAACTTAT
*
7344683 AAATATTATTTTATTAACTT
1 AAAT-TTATATTATTAACTT
7344703 GATATTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 7 0.41
22 6 0.35
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (21 bp):
AAATTTATATTATTAACTTAT
Found at i:7344809 original size:16 final size:16
Alignment explanation
Indices: 7344790--7344840 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
7344780 TTATTTCAAA
7344790 TTCGAGTCATTTCGGG
1 TTCGAGTCATTTCGGG
* * *
7344806 TTCGAGTTATTTTGGA
1 TTCGAGTCATTTCGGG
*
7344822 TTCG-GATCATTTCGAG
1 TTCGAG-TCATTTCGGG
7344838 TTC
1 TTC
7344841 AGATCATATG
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
15 1 0.04
16 26 0.96
ACGTcount: A:0.16, C:0.16, G:0.25, T:0.43
Consensus pattern (16 bp):
TTCGAGTCATTTCGGG
Found at i:7352382 original size:20 final size:20
Alignment explanation
Indices: 7352362--7352401 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 20
7352352 TTATTAATTA
7352362 TTAATTATATTTAATATTTAT
1 TTAA-TATATTTAATATTTAT
7352383 TTAATATATTTAATATTTA
1 TTAATATATTTAATATTTA
7352402 AATATATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
TTAATATATTTAATATTTAT
Found at i:7352383 original size:11 final size:11
Alignment explanation
Indices: 7352369--7352401 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
7352359 TTATTAATTA
7352369 TATTTAATATT
1 TATTTAATATT
7352380 TATTTAATA--
1 TATTTAATATT
7352389 TATTTAATATT
1 TATTTAATATT
7352400 TA
1 TA
7352402 AATATATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
9 9 0.45
11 11 0.55
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (11 bp):
TATTTAATATT
Found at i:7354396 original size:48 final size:48
Alignment explanation
Indices: 7354282--7354389 Score: 171
Period size: 48 Copynumber: 2.2 Consensus size: 48
7354272 GTCAAAAAAT
** **
7354282 GAAAAGAAAATAAATTTCGTATGTATTTGATAAAAAAGAAAAGTGAGA
1 GAAAAGAAAATAAATTTTTTATGTATTCAATAAAAAAGAAAAGTGAGA
*
7354330 AAAAAGAAAATAAATTTTTTATGTATTCAATAAAAAAGAAAAGTGAGA
1 GAAAAGAAAATAAATTTTTTATGTATTCAATAAAAAAGAAAAGTGAGA
7354378 GAAAAGAAAATA
1 GAAAAGAAAATA
7354390 GGTTTTTATC
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.58, C:0.02, G:0.16, T:0.24
Consensus pattern (48 bp):
GAAAAGAAAATAAATTTTTTATGTATTCAATAAAAAAGAAAAGTGAGA
Found at i:7357084 original size:21 final size:20
Alignment explanation
Indices: 7357054--7357134 Score: 62
Period size: 21 Copynumber: 4.2 Consensus size: 20
7357044 TTAAATAATT
*
7357054 TATATATTTATAT-TATATAAA
1 TATATTTTTATATAT-TAT-AA
7357075 TATATTTTTATATATTATAA
1 TATATTTTTATATATTATAA
* *
7357095 T-TATTTTTA-A-AATATTA
1 TATATTTTTATATATTATAA
* * *
7357112 TATATTTATAAATATTTTAA
1 TATATTTTTATATATTATAA
7357132 TAT
1 TAT
7357135 TTTAATAATT
Statistics
Matches: 49, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
17 6 0.12
18 8 0.16
19 9 0.18
20 10 0.20
21 15 0.31
22 1 0.02
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
TATATTTTTATATATTATAA
Found at i:7357115 original size:37 final size:35
Alignment explanation
Indices: 7357074--7357149 Score: 91
Period size: 37 Copynumber: 2.1 Consensus size: 35
7357064 TATTATATAA
* *
7357074 ATATATTTTTATATATTATAATTATTTTTAA-AATATT
1 ATATATTTATAAATATTATAA-TA-TTTTAATAAT-TT
*
7357111 ATATATTTATAAATATTTTAATATTTTAATAATTT
1 ATATATTTATAAATATTATAATATTTTAATAATTT
7357146 ATAT
1 ATAT
7357150 GATATAAATT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
35 12 0.34
36 5 0.14
37 18 0.51
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (35 bp):
ATATATTTATAAATATTATAATATTTTAATAATTT
Found at i:7357145 original size:27 final size:27
Alignment explanation
Indices: 7357080--7357148 Score: 70
Period size: 27 Copynumber: 2.5 Consensus size: 27
7357070 ATAAATATAT
* *
7357080 TTTTAT-ATATTATAATTATTTTTAAAA
1 TTTTATAAT-TTATAAATATTTTTAATA
*
7357107 TATTATATATTTATAAATA-TTTTAATA
1 TTTTATA-ATTTATAAATATTTTTAATA
7357134 TTTTAATAATTTATA
1 TTTT-ATAATTTATA
7357149 TGATATAAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
27 22 0.63
28 11 0.31
29 2 0.06
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (27 bp):
TTTTATAATTTATAAATATTTTTAATA
Found at i:7357714 original size:3 final size:3
Alignment explanation
Indices: 7357706--7357752 Score: 85
Period size: 3 Copynumber: 15.7 Consensus size: 3
7357696 CCAGCAATGC
*
7357706 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA TTA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
7357753 GAGGAGGGTT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
ATA
Found at i:7363548 original size:22 final size:23
Alignment explanation
Indices: 7363516--7363561 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
7363506 TGATATTACC
*
7363516 ACACAATCATC-CACCAATATTT
1 ACACAACCATCTCACCAATATTT
*
7363538 ACACAACCATCTCATCAATATTT
1 ACACAACCATCTCACCAATATTT
7363561 A
1 A
7363562 AAAAGTGAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 10 0.48
23 11 0.52
ACGTcount: A:0.41, C:0.30, G:0.00, T:0.28
Consensus pattern (23 bp):
ACACAACCATCTCACCAATATTT
Found at i:7364082 original size:17 final size:17
Alignment explanation
Indices: 7364016--7364081 Score: 57
Period size: 17 Copynumber: 3.8 Consensus size: 17
7364006 TTGATACTTT
*
7364016 ATTAAATTTAAATTATA
1 ATTAAATTTATATTATA
*
7364033 ATTAGATTTAT-TTATAA
1 ATTAAATTTATATTAT-A
7364050 ATTAAATAATT-TATT-TA
1 ATTAAAT--TTATATTATA
7364067 ATTTAAATTTATATT
1 A-TTAAATTTATATT
7364082 TTTTATTTTA
Statistics
Matches: 40, Mismatches: 3, Indels: 12
0.73 0.05 0.22
Matches are distributed among these distances:
16 6 0.15
17 22 0.55
18 8 0.20
19 4 0.10
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (17 bp):
ATTAAATTTATATTATA
Found at i:7364091 original size:20 final size:23
Alignment explanation
Indices: 7364013--7364097 Score: 72
Period size: 20 Copynumber: 3.8 Consensus size: 23
7364003 ATCTTGATAC
* *
7364013 TTTATTAAATTTAAATT--ATAA
1 TTTATTTATTTTAAATTAAATAA
*
7364034 TTAGATTTATTTATAAATTAAATAA
1 TT-TATTTATTT-TAAATTAAATAA
* *
7364059 TTTATTTAATTTAAATT-TAT-A
1 TTTATTTATTTTAAATTAAATAA
7364080 TTT-TTTATTTTAAATTAA
1 TTTATTTATTTTAAATTAA
7364098 TTTGATTTAA
Statistics
Matches: 51, Mismatches: 8, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
20 12 0.24
21 6 0.12
22 8 0.16
23 12 0.24
24 7 0.14
25 6 0.12
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.56
Consensus pattern (23 bp):
TTTATTTATTTTAAATTAAATAA
Found at i:7364106 original size:20 final size:20
Alignment explanation
Indices: 7364031--7364106 Score: 57
Period size: 20 Copynumber: 3.6 Consensus size: 20
7364021 ATTTAAATTA
*
7364031 TAATTAGATTTATTTATAAAT
1 TAATTTGATTTATTT-TAAAT
* *
7364052 TAAATAATTTATTTAATTTAAATT
1 T-AAT--TTGATTTATTTTAAA-T
7364076 TATATTT--TTTATTTTAAAT
1 TA-ATTTGATTTATTTTAAAT
7364095 TAATTTGATTTA
1 TAATTTGATTTA
7364107 AAATAATATT
Statistics
Matches: 44, Mismatches: 4, Indels: 15
0.70 0.06 0.24
Matches are distributed among these distances:
18 4 0.09
19 3 0.07
20 14 0.32
21 1 0.02
22 5 0.11
23 5 0.11
24 12 0.27
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (20 bp):
TAATTTGATTTATTTTAAAT
Found at i:7364127 original size:34 final size:35
Alignment explanation
Indices: 7364057--7364132 Score: 91
Period size: 35 Copynumber: 2.2 Consensus size: 35
7364047 TAAATTAAAT
* * * *
7364057 AATTTATTTAATTTAAATTTATATTTTTTATTTTA
1 AATTAATTTAATTTAAAATAATATTTTTTATATTA
*
7364092 AATTAATTTGATTTAAAATAATA-TTTTTATATTA
1 AATTAATTTAATTTAAAATAATATTTTTTATATTA
*
7364126 AAATAAT
1 AATTAAT
7364133 ATATTTTTAC
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
34 16 0.46
35 19 0.54
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (35 bp):
AATTAATTTAATTTAAAATAATATTTTTTATATTA
Found at i:7364870 original size:2 final size:2
Alignment explanation
Indices: 7364863--7364893 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7364853 CTAAACTAAG
7364863 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7364894 AATTAATAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7365127 original size:18 final size:18
Alignment explanation
Indices: 7365106--7365141 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
7365096 TAAATTAGAT
7365106 AAATATTATTAATAATAA
1 AAATATTATTAATAATAA
* *
7365124 AAATATTTTTAATGATAA
1 AAATATTATTAATAATAA
7365142 TTTTAAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.42
Consensus pattern (18 bp):
AAATATTATTAATAATAA
Found at i:7366654 original size:2 final size:2
Alignment explanation
Indices: 7366647--7366690 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
7366637 CGAAACAATG
7366647 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7366689 AT
1 AT
7366691 TTTTGAATAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7366996 original size:17 final size:18
Alignment explanation
Indices: 7366974--7367014 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
7366964 TGCTAAATAT
7366974 AATATATA-TTTAATAAA
1 AATATATATTTTAATAAA
*
7366991 AATATA-ATTTTAATTAA
1 AATATATATTTTAATAAA
*
7367008 ATTATAT
1 AATATAT
7367015 GATCTTTATC
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
16 1 0.05
17 19 0.95
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
AATATATATTTTAATAAA
Found at i:7376502 original size:28 final size:29
Alignment explanation
Indices: 7376467--7376551 Score: 104
Period size: 28 Copynumber: 2.9 Consensus size: 29
7376457 TATTAAATTA
7376467 TATTTTAATATAAATAAATATTTAATACT
1 TATTTTAATATAAATAAATATTTAATACT
*
7376496 TA-TTTAATATAAATATAAT-TTTAATAATT
1 TATTTTAATATAAATA-AATATTTAAT-ACT
*
7376525 TATTTTTAATATAAATAGA-ATTTAATA
1 TA-TTTTAATATAAATAAATATTTAATA
7376552 AATTTTAATT
Statistics
Matches: 49, Mismatches: 2, Indels: 10
0.80 0.03 0.16
Matches are distributed among these distances:
28 19 0.39
29 10 0.20
30 7 0.14
31 13 0.27
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (29 bp):
TATTTTAATATAAATAAATATTTAATACT
Found at i:7376536 original size:31 final size:31
Alignment explanation
Indices: 7376454--7376616 Score: 112
Period size: 31 Copynumber: 5.4 Consensus size: 31
7376444 CTTTTATTAT
* *
7376454 TTTTATTAAATTATATTTTAATATAAATA-AA
1 TTTTAATAATTTAT-TTTTAATATAAATATAA
*
7376485 TATTTAAT-ACTTA--TTTAATATAAATATAA
1 T-TTTAATAATTTATTTTTAATATAAATATAA
*
7376514 TTTTAATAATTTATTTTTAATATAAATAGAA
1 TTTTAATAATTTATTTTTAATATAAATATAA
* *
7376545 -TTTAATAAATTTTAATTATT-AT-TCAATATAA
1 TTTTAAT-AA-TTT-ATTTTTAATATAAATATAA
* * * *
7376576 ATATACT--TTTATTATTTAATATAAAT-TTA
1 TTTTAATAATTTATT-TTTAATATAAATATAA
7376605 TTTTAATAATTT
1 TTTTAATAATTT
7376617 TTAATTATTT
Statistics
Matches: 103, Mismatches: 15, Indels: 28
0.71 0.10 0.19
Matches are distributed among these distances:
27 3 0.03
28 24 0.23
29 15 0.15
30 10 0.10
31 32 0.31
32 14 0.14
33 5 0.05
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.53
Consensus pattern (31 bp):
TTTTAATAATTTATTTTTAATATAAATATAA
Found at i:7376596 original size:24 final size:23
Alignment explanation
Indices: 7376560--7376609 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 23
7376550 TAAATTTTAA
7376560 TTATTATTCAATATAAATATACTT
1 TTATTATTCAATATAAATATA-TT
* *
7376584 TTATTATTTAATATAAATTTATT
1 TTATTATTCAATATAAATATATT
7376607 TTA
1 TTA
7376610 ATAATTTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 5 0.21
24 19 0.79
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (23 bp):
TTATTATTCAATATAAATATATT
Found at i:7376616 original size:24 final size:24
Alignment explanation
Indices: 7376560--7376616 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
7376550 TAAATTTTAA
* *
7376560 TTATTATTCAATATAAATATACTT
1 TTATAATTTAATATAAATATACTT
* *
7376584 TTATTATTTAATATAAATTTA-TT
1 TTATAATTTAATATAAATATACTT
7376607 TTAATAATTT
1 TT-ATAATTT
7376617 TTAATTATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 4 0.14
24 25 0.86
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (24 bp):
TTATAATTTAATATAAATATACTT
Found at i:7376692 original size:3 final size:3
Alignment explanation
Indices: 7376678--7376751 Score: 50
Period size: 3 Copynumber: 25.3 Consensus size: 3
7376668 TTTATTTTGT
* * * *
7376678 TTA TTA TT- TTA TTA TTA TTA TTA TTA TGA TTA -AA TT- TAA ATA TATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
7376724 TT- TTA TTA TTAA TT- TTAA TTA TTA TTA T
1 TTA TTA TTA TT-A TTA TT-A TTA TTA TTA T
7376752 AATAATAATT
Statistics
Matches: 55, Mismatches: 8, Indels: 16
0.70 0.10 0.20
Matches are distributed among these distances:
2 8 0.15
3 39 0.71
4 8 0.15
ACGTcount: A:0.36, C:0.00, G:0.01, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:7376735 original size:25 final size:25
Alignment explanation
Indices: 7376693--7376751 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
7376683 ATTTTATTAT
7376693 TATTATTATTATGATTAAATTTAAA
1 TATTATTATTATGATTAAATTTAAA
* * *
7376718 TATATATT-TTATTATTAATTTTAAT
1 TAT-TATTATTATGATTAAATTTAAA
7376743 TATTATTAT
1 TATTATTAT
7376752 AATAATAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 4 0.14
25 21 0.72
26 4 0.14
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (25 bp):
TATTATTATTATGATTAAATTTAAA
Found at i:7379586 original size:22 final size:20
Alignment explanation
Indices: 7379535--7379577 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 20
7379525 TAAACTTTTT
*
7379535 AAATACAAAACTTAAAAATA
1 AAATAAAAAACTTAAAAATA
7379555 AAACTAAAAAAACTTAAAAATA
1 AAA-T-AAAAAACTTAAAAATA
7379577 A
1 A
7379578 TTAATAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 3 0.15
21 1 0.05
22 16 0.80
ACGTcount: A:0.72, C:0.09, G:0.00, T:0.19
Consensus pattern (20 bp):
AAATAAAAAACTTAAAAATA
Found at i:7379741 original size:6 final size:6
Alignment explanation
Indices: 7379674--7379740 Score: 107
Period size: 6 Copynumber: 10.8 Consensus size: 6
7379664 ATGTTATTTT
7379674 AAATTA AAATTAAA AAATTA AAATTA AAATTA AAATTA AAATTA AAATTA
1 AAATTA AAATT--A AAATTA AAATTA AAATTA AAATTA AAATTA AAATTA
*
7379724 AAATTA AAATTT AAATT
1 AAATTA AAATTA AAATT
7379741 TTAACTAAAA
Statistics
Matches: 58, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
6 52 0.90
8 6 0.10
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (6 bp):
AAATTA
Found at i:7381084 original size:16 final size:18
Alignment explanation
Indices: 7381057--7381090 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
7381047 CCACTAATTT
7381057 ATTTTTTAAAAAC-CTAA
1 ATTTTTTAAAAACACTAA
7381074 ATTTTTT-AAAACACTAA
1 ATTTTTTAAAAACACTAA
7381091 CTACAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.41
Consensus pattern (18 bp):
ATTTTTTAAAAACACTAA
Found at i:7382265 original size:19 final size:19
Alignment explanation
Indices: 7382241--7382278 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
7382231 CAAAGATTGA
7382241 TTTTCT-TTATCTCTTTTTT
1 TTTTCTATT-TCTCTTTTTT
7382260 TTTTCTATTTCTCTTTTTT
1 TTTTCTATTTCTCTTTTTT
7382279 CCCTTTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 16 0.89
20 2 0.11
ACGTcount: A:0.05, C:0.16, G:0.00, T:0.79
Consensus pattern (19 bp):
TTTTCTATTTCTCTTTTTT
Found at i:7382362 original size:25 final size:25
Alignment explanation
Indices: 7382334--7382384 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
7382324 AGTAATTAAT
7382334 TATCCCTGATATTAAAAGATATTGC
1 TATCCCTGATATTAAAAGATATTGC
7382359 TATCCCTGATATTAAAAGATATTGC
1 TATCCCTGATATTAAAAGATATTGC
7382384 T
1 T
7382385 TTAGTTTAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (25 bp):
TATCCCTGATATTAAAAGATATTGC
Found at i:7382679 original size:71 final size:71
Alignment explanation
Indices: 7382599--7382743 Score: 281
Period size: 71 Copynumber: 2.0 Consensus size: 71
7382589 TTAGCCTAAT
7382599 TTTCTTTATCTCATTTAAAATATACCTTTTGTTTTTTAAAAATTAAATAAAGTAATATGATATCT
1 TTTCTTTATCTCATTTAAAATATACCTTTTGTTTTTTAAAAATTAAATAAAGTAATATGATATCT
7382664 TTCATA
66 TTCATA
7382670 TTTCTTTATCTCATTTAAAATATACCTTTTGTTTTTTAAAAATTAAATAAAGTAATATGATATCT
1 TTTCTTTATCTCATTTAAAATATACCTTTTGTTTTTTAAAAATTAAATAAAGTAATATGATATCT
*
7382735 TTTATA
66 TTCATA
7382741 TTT
1 TTT
7382744 ATTTTTCTTT
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 73 1.00
ACGTcount: A:0.36, C:0.09, G:0.04, T:0.51
Consensus pattern (71 bp):
TTTCTTTATCTCATTTAAAATATACCTTTTGTTTTTTAAAAATTAAATAAAGTAATATGATATCT
TTCATA
Found at i:7388119 original size:20 final size:21
Alignment explanation
Indices: 7388091--7388150 Score: 88
Period size: 20 Copynumber: 3.0 Consensus size: 21
7388081 TAGGTAAAAA
7388091 GATAGAATGTATCGATACATT
1 GATAGAATGTATCGATACATT
7388112 GA-AGAATGTATCGATACATT
1 GATAGAATGTATCGATACATT
* *
7388132 TATA-CATGTATCGATACAT
1 GATAGAATGTATCGATACAT
7388151 CTGGGTACTT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
20 33 0.92
21 3 0.08
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (21 bp):
GATAGAATGTATCGATACATT
Found at i:7394900 original size:21 final size:20
Alignment explanation
Indices: 7394874--7394919 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
7394864 GTAATCCCAT
*
7394874 GTAATCA-ATCATGTAATTTG
1 GTAATCAGAT-ATATAATTTG
7394894 AGTAATCAGATATATAATTTG
1 -GTAATCAGATATATAATTTG
7394915 GTAAT
1 GTAAT
7394920 AAATTATTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 5 0.22
21 16 0.70
22 2 0.09
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (20 bp):
GTAATCAGATATATAATTTG
Found at i:7398321 original size:27 final size:27
Alignment explanation
Indices: 7398291--7398361 Score: 67
Period size: 27 Copynumber: 2.7 Consensus size: 27
7398281 AAGTTTACGT
7398291 ATAAAAAATCAATCA-AAATAAAAATAA
1 ATAAAAAATCAAT-ATAAATAAAAATAA
* **
7398318 ATAACAAAA-AAATATAAATAAAAATTT
1 ATAA-AAAATCAATATAAATAAAAATAA
*
7398345 TTAAAAAATCAA-ATAAA
1 ATAAAAAATCAATATAAA
7398362 AAATCGAAAG
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
26 10 0.28
27 22 0.61
28 4 0.11
ACGTcount: A:0.72, C:0.06, G:0.00, T:0.23
Consensus pattern (27 bp):
ATAAAAAATCAATATAAATAAAAATAA
Found at i:7398336 original size:17 final size:18
Alignment explanation
Indices: 7398304--7398338 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
7398294 AAAAATCAAT
7398304 CAAAATAAAAATAAATAA
1 CAAAATAAAAATAAATAA
*
7398322 CAAAA-AAATATAAATAA
1 CAAAATAAAAATAAATAA
7398339 AAATTTTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.77, C:0.06, G:0.00, T:0.17
Consensus pattern (18 bp):
CAAAATAAAAATAAATAA
Found at i:7402775 original size:8 final size:7
Alignment explanation
Indices: 7402739--7402815 Score: 61
Period size: 7 Copynumber: 10.9 Consensus size: 7
7402729 CCACTCATTT
7402739 TTTTTTA
1 TTTTTTA
*
7402746 CTTTTTA
1 TTTTTTA
7402753 --TTTTA
1 TTTTTTA
7402758 TTTATTTA
1 TTT-TTTA
7402766 TTTTTGTA
1 TTTTT-TA
*
7402774 TTTTTTG
1 TTTTTTA
*
7402781 TCTTTTA
1 TTTTTTA
7402788 TTTTTGTA
1 TTTTT-TA
7402796 TTTTATTA
1 TTTT-TTA
*
7402804 -TTATTA
1 TTTTTTA
7402810 TTTTTT
1 TTTTTT
7402816 TAAAAAAATA
Statistics
Matches: 56, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
5 5 0.09
6 3 0.05
7 25 0.45
8 22 0.39
9 1 0.02
ACGTcount: A:0.16, C:0.03, G:0.04, T:0.78
Consensus pattern (7 bp):
TTTTTTA
Found at i:7402801 original size:35 final size:36
Alignment explanation
Indices: 7402748--7402815 Score: 88
Period size: 35 Copynumber: 1.9 Consensus size: 36
7402738 TTTTTTTACT
*
7402748 TTTTATTTTATTTATTTATT-TT-TGTATTTTTTGTC
1 TTTTATTTTATGTATTTATTATTAT-TATTTTTTGTC
7402783 TTTTATTTT-TGTATTTTATTATTATTATTTTTT
1 TTTTATTTTATGTA-TTTATTATTATTATTTTTT
7402816 TAAAAAAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
34 3 0.10
35 15 0.52
36 10 0.34
37 1 0.03
ACGTcount: A:0.16, C:0.01, G:0.04, T:0.78
Consensus pattern (36 bp):
TTTTATTTTATGTATTTATTATTATTATTTTTTGTC
Found at i:7402810 original size:22 final size:21
Alignment explanation
Indices: 7402738--7402814 Score: 70
Period size: 22 Copynumber: 3.6 Consensus size: 21
7402728 GCCACTCATT
* *
7402738 TTTTTTTACTTTT-TATTTTA
1 TTTTATTATTTTTGTATTTTA
7402758 -TTTATTTATTTTTGTATTTT-
1 TTTTA-TTATTTTTGTATTTTA
*
7402778 TTGTCTTTTATTTTTGTATTTTA
1 TT-T-TATTATTTTTGTATTTTA
7402801 TTATTATTATTTTT
1 TT-TTATTATTTTT
7402815 TTAAAAAAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
19 3 0.07
20 7 0.15
21 7 0.15
22 25 0.54
23 4 0.09
ACGTcount: A:0.16, C:0.03, G:0.04, T:0.78
Consensus pattern (21 bp):
TTTTATTATTTTTGTATTTTA
Found at i:7403345 original size:41 final size:41
Alignment explanation
Indices: 7403276--7403388 Score: 104
Period size: 41 Copynumber: 2.8 Consensus size: 41
7403266 CTTTCTTATA
* * * ** *
7403276 TGTTGACTTATTGATTTTGTCCTAGTCAACCATTGACTC-C
1 TGTTGACTTGTAGATTTTATCCCGGTCAACCATTCACTCTC
* *
7403316 TATTTGACTTGTA-AGTTTTATCCCGGTCAACCCTTCACTCTC
1 T-GTTGACTTGTAGA-TTTTATCCCGGTCAACCATTCACTCTC
* *
7403358 TGTTGACTTGTCGATTTTATCTCGGTCAACC
1 TGTTGACTTGTAGATTTTATCCCGGTCAACC
7403389 TTTTTTCTTA
Statistics
Matches: 58, Mismatches: 11, Indels: 7
0.76 0.14 0.09
Matches are distributed among these distances:
40 2 0.03
41 53 0.91
42 3 0.05
ACGTcount: A:0.19, C:0.25, G:0.15, T:0.42
Consensus pattern (41 bp):
TGTTGACTTGTAGATTTTATCCCGGTCAACCATTCACTCTC
Found at i:7403907 original size:66 final size:66
Alignment explanation
Indices: 7403837--7403964 Score: 154
Period size: 66 Copynumber: 1.9 Consensus size: 66
7403827 TTTCACCCTA
* *
7403837 GTCAACC-CATTTTCAACTTCA-ATTTCACCCTAGTTAC-TCTTAGTTGACTTTATCGGTTTTAC
1 GTCAACCAC-TTTTCAACTT-AGATTTCACCCTAGTCACAT-TTAGTTGACTTTAACGGTTTTAC
7403899 TTTG
63 TTTG
* * * *
7403903 GTCAACCACTTTTCGACTTAGGTTTCACCTTGGTCACATTTAGTTGACTTTAACGGTTTTAC
1 GTCAACCACTTTTCAACTTAGATTTCACCCTAGTCACATTTAGTTGACTTTAACGGTTTTAC
7403965 CCTGATCAAC
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
65 1 0.02
66 50 0.94
67 2 0.04
ACGTcount: A:0.21, C:0.23, G:0.13, T:0.42
Consensus pattern (66 bp):
GTCAACCACTTTTCAACTTAGATTTCACCCTAGTCACATTTAGTTGACTTTAACGGTTTTACTTT
G
Found at i:7405412 original size:6 final size:6
Alignment explanation
Indices: 7405403--7405440 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
7405393 TTTATGATTA
*
7405403 TTAATT TTAATT TTAATT TT-ATT TTAATAT TAAATT TT
1 TTAATT TTAATT TTAATT TTAATT TTAAT-T TTAATT TT
7405441 TTTTATTGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
5 5 0.18
6 18 0.64
7 5 0.18
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (6 bp):
TTAATT
Found at i:7405428 original size:17 final size:18
Alignment explanation
Indices: 7405406--7405445 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
7405396 ATGATTATTA
*
7405406 ATTTTAAT-TTTAATTTT
1 ATTTTAATATTAAATTTT
7405423 ATTTTAATATTAAATTTT
1 ATTTTAATATTAAATTTT
7405441 -TTTTA
1 ATTTTA
7405446 TTGTATCTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 13 0.62
18 8 0.38
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
ATTTTAATATTAAATTTT
Found at i:7405627 original size:12 final size:12
Alignment explanation
Indices: 7405546--7405628 Score: 59
Period size: 12 Copynumber: 7.0 Consensus size: 12
7405536 ATTTTACATG
7405546 ATTAAATTTTTA
1 ATTAAATTTTTA
7405558 ATT--ATTTTTA
1 ATTAAATTTTTA
*
7405568 ATTGAA---TTA
1 ATTAAATTTTTA
*
7405577 ATAAAATTTTTA
1 ATTAAATTTTTA
*
7405589 ATTGAATTTTGTCA
1 ATTAAATTTT-T-A
*
7405603 TATGTAAAATTTTA
1 -AT-TAAATTTTTA
7405617 ATTAAATTTTTA
1 ATTAAATTTTTA
7405629 TTTGTTGCAA
Statistics
Matches: 55, Mismatches: 7, Indels: 18
0.69 0.09 0.22
Matches are distributed among these distances:
9 7 0.13
10 10 0.18
12 24 0.44
13 3 0.05
14 2 0.04
15 3 0.05
16 6 0.11
ACGTcount: A:0.40, C:0.01, G:0.05, T:0.54
Consensus pattern (12 bp):
ATTAAATTTTTA
Found at i:7405984 original size:15 final size:15
Alignment explanation
Indices: 7405964--7405994 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7405954 TCTAACCAAT
*
7405964 TTAGTTCCATCATAA
1 TTAGTTCCAGCATAA
7405979 TTAGTTCCAGCATAA
1 TTAGTTCCAGCATAA
7405994 T
1 T
7405995 AATCAAGGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.19, G:0.10, T:0.39
Consensus pattern (15 bp):
TTAGTTCCAGCATAA
Found at i:7406169 original size:3 final size:3
Alignment explanation
Indices: 7406161--7406214 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
7406151 GAAATAGCAA
7406161 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
7406209 AAT AAT
1 AAT AAT
7406215 GAAAAGACAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:7407878 original size:29 final size:28
Alignment explanation
Indices: 7407827--7407884 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 28
7407817 GTCATTTCGA
7407827 GGTCAAAATATAATTTTAAAAAGTTTAAG
1 GGTCAAAATATAATTTTAAAAAG-TTAAG
* *
7407856 GGTCAAAATGTAA-TTTAGGAAAGTTAAG
1 GGTCAAAATATAATTTTA-AAAAGTTAAG
7407884 G
1 G
7407885 TGGAAAGTGC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 10 0.38
29 16 0.62
ACGTcount: A:0.45, C:0.03, G:0.21, T:0.31
Consensus pattern (28 bp):
GGTCAAAATATAATTTTAAAAAGTTAAG
Found at i:7407987 original size:29 final size:29
Alignment explanation
Indices: 7407895--7407968 Score: 121
Period size: 29 Copynumber: 2.6 Consensus size: 29
7407885 TGGAAAGTGC
* *
7407895 AATTTTGAAAAGTTTTGGCATCAAAGTCT
1 AATTTTGAAAAGTTTAGGCATCAAAGTAT
*
7407924 GATTTTGAAAAGTTTAGGCATCAAAGTAT
1 AATTTTGAAAAGTTTAGGCATCAAAGTAT
7407953 AATTTTGAAAAGTTTA
1 AATTTTGAAAAGTTTA
7407969 AGGACTCAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.38, C:0.07, G:0.18, T:0.38
Consensus pattern (29 bp):
AATTTTGAAAAGTTTAGGCATCAAAGTAT
Found at i:7410661 original size:28 final size:29
Alignment explanation
Indices: 7410610--7410702 Score: 84
Period size: 29 Copynumber: 3.1 Consensus size: 29
7410600 GTAGAGTTTT
7410610 AATAAT-TATAAAATTTTAAATTAAA-TAA
1 AATAATATAT-AAATTTTAAATTAAATTAA
*
7410638 AATTAATATATAAATTTT-TATTAAATTAA
1 AA-TAATATATAAATTTTAAATTAAATTAA
* *
7410667 AATATTATGATAAATTATGTAAAATAAATTATA
1 AATAATAT-ATAAATT-T-TAAATTAAATTA-A
7410700 AAT
1 AAT
7410703 TAAGATAAGA
Statistics
Matches: 53, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
28 13 0.25
29 23 0.43
30 4 0.08
31 1 0.02
32 8 0.15
33 4 0.08
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (29 bp):
AATAATATATAAATTTTAAATTAAATTAA
Found at i:7411458 original size:9 final size:9
Alignment explanation
Indices: 7411438--7411488 Score: 59
Period size: 9 Copynumber: 5.3 Consensus size: 9
7411428 GACAATTGAG
7411438 AAAGAAAGAA
1 AAAGAAA-AA
7411448 AAGAGAAAAA
1 AA-AGAAAAA
7411458 AGAA-AAAAA
1 A-AAGAAAAA
7411467 AAAGAAAAA
1 AAAGAAAAA
7411476 AAAGAGAAAA
1 AAAGA-AAAA
7411486 AAA
1 AAA
7411489 TTTATGTGTT
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
8 2 0.05
9 16 0.43
10 13 0.35
11 6 0.16
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (9 bp):
AAAGAAAAA
Found at i:7411467 original size:11 final size:11
Alignment explanation
Indices: 7411453--7411488 Score: 63
Period size: 11 Copynumber: 3.3 Consensus size: 11
7411443 AAGAAAAGAG
7411453 AAAAAAGAAAA
1 AAAAAAGAAAA
7411464 AAAAAAGAAAA
1 AAAAAAGAAAA
*
7411475 AAAAGAGAAAA
1 AAAAAAGAAAA
7411486 AAA
1 AAA
7411489 TTTATGTGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (11 bp):
AAAAAAGAAAA
Found at i:7412596 original size:15 final size:16
Alignment explanation
Indices: 7412576--7412605 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
7412566 TTTTTAAACA
7412576 AATTTTA-TTAATTAT
1 AATTTTATTTAATTAT
7412591 AATTTTATTTAATTA
1 AATTTTATTTAATTA
7412606 AAAAAATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
AATTTTATTTAATTAT
Found at i:7412622 original size:4 final size:4
Alignment explanation
Indices: 7412615--7412661 Score: 94
Period size: 4 Copynumber: 11.8 Consensus size: 4
7412605 AAAAAAATTA
7412615 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TAT
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TAT
7412662 ACATATATAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 43 1.00
ACGTcount: A:0.26, C:0.23, G:0.00, T:0.51
Consensus pattern (4 bp):
TATC
Found at i:7412774 original size:28 final size:29
Alignment explanation
Indices: 7412734--7412790 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
7412724 TTTACGAAGG
* *
7412734 GAAAAGAGAGAAA-AAAAGGAGAAAAAAA
1 GAAAAGAAAGAAAGAAAAAGAGAAAAAAA
7412762 GAAAAGAAAGAAAGAAAAAGAGAAAAAAA
1 GAAAAGAAAGAAAGAAAAAGAGAAAAAAA
7412791 TTATGTCTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 12 0.46
29 14 0.54
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (29 bp):
GAAAAGAAAGAAAGAAAAAGAGAAAAAAA
Found at i:7413201 original size:13 final size:15
Alignment explanation
Indices: 7413179--7413215 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
7413169 TGCTTTTGAA
7413179 ACATATAAA-AATAT
1 ACATATAAATAATAT
7413193 ACA-ATAAAATAATAT
1 ACATAT-AAATAATAT
7413208 ACATATAA
1 ACATATAA
7413216 CACGAATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
13 2 0.10
14 6 0.30
15 10 0.50
16 2 0.10
ACGTcount: A:0.65, C:0.08, G:0.00, T:0.27
Consensus pattern (15 bp):
ACATATAAATAATAT
Found at i:7413259 original size:38 final size:35
Alignment explanation
Indices: 7413198--7413288 Score: 85
Period size: 36 Copynumber: 2.4 Consensus size: 35
7413188 AATATACAAT
* *
7413198 AAAATAATATACATATAACACGAATATATGTACATA-TAA
1 AAAATAA-ATA-AAATAAAACGAAT-TAT-TA-ATAGTAA
7413237 AAATATAAATAAAATAAAACGAATTATTAATATGTAA
1 AAA-ATAAATAAAATAAAACGAATTATTAATA-GTAA
*
7413274 AAAATATATAAAATA
1 AAAATAAATAAAATA
7413289 TAATATTTAC
Statistics
Matches: 46, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
35 3 0.07
36 13 0.28
37 9 0.20
38 11 0.24
39 6 0.13
40 4 0.09
ACGTcount: A:0.62, C:0.05, G:0.04, T:0.29
Consensus pattern (35 bp):
AAAATAAATAAAATAAAACGAATTATTAATAGTAA
Found at i:7413357 original size:15 final size:14
Alignment explanation
Indices: 7413327--7413369 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
7413317 AATATATCAA
7413327 TTTTTTTCTTT-TT
1 TTTTTTTCTTTCTT
*
7413340 TTTCTTTCTTTCTTT
1 TTTTTTTCTTTC-TT
7413355 TTTTTTTCTTT-TT
1 TTTTTTTCTTTCTT
7413368 TT
1 TT
7413370 CTATCTCAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
13 14 0.54
15 12 0.46
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (14 bp):
TTTTTTTCTTTCTT
Found at i:7413359 original size:19 final size:19
Alignment explanation
Indices: 7413335--7413371 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
7413325 AATTTTTTTC
7413335 TTTTTTTTCTTTCTTTCTT
1 TTTTTTTTCTTTCTTTCTT
*
7413354 TTTTTTTTCTTTTTTTCT
1 TTTTTTTTCTTTCTTTCT
7413372 ATCTCAACTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (19 bp):
TTTTTTTTCTTTCTTTCTT
Found at i:7414168 original size:2 final size:2
Alignment explanation
Indices: 7414161--7414203 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
7414151 AGCCCAGATT
*
7414161 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC CC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
7414203 T
1 T
7414204 TCCCTTCTCC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
TC
Found at i:7414212 original size:10 final size:12
Alignment explanation
Indices: 7414161--7414212 Score: 72
Period size: 12 Copynumber: 4.5 Consensus size: 12
7414151 AGCCCAGATT
*
7414161 TCTCTCTCTCTC
1 TCTCTCTCTCCC
*
7414173 TCTCTCTCTCTC
1 TCTCTCTCTCCC
7414185 TCTCTCTCTCCC
1 TCTCTCTCTCCC
7414197 TCTCTCT-TCCC
1 TCTCTCTCTCCC
7414208 T-TCTC
1 TCTCTC
7414213 CTTAGGCCTT
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
10 4 0.10
11 5 0.13
12 30 0.77
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (12 bp):
TCTCTCTCTCCC
Found at i:7414881 original size:15 final size:15
Alignment explanation
Indices: 7414861--7414895 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
7414851 AAAACCCTCA
**
7414861 TTGGTTGTTTTTCTT
1 TTGGTTGTTTGCCTT
7414876 TTGGTTGTTTGCCTT
1 TTGGTTGTTTGCCTT
7414891 TTGGT
1 TTGGT
7414896 GTGGTTGGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.00, C:0.09, G:0.26, T:0.66
Consensus pattern (15 bp):
TTGGTTGTTTGCCTT
Found at i:7422153 original size:15 final size:16
Alignment explanation
Indices: 7422116--7422189 Score: 71
Period size: 16 Copynumber: 4.5 Consensus size: 16
7422106 TCGATTTTTT
7422116 TTTTTTTAAGTTTGAA
1 TTTTTTTAAGTTTGAA
*
7422132 TTATTTTAAGTTT-AA
1 TTTTTTTAAGTTTGAA
*
7422147 TTTTTTTTTAA-TTTGAGG
1 --TTTTTTTAAGTTTGA-A
*
7422165 TTTTTTTAAGTTTGAG
1 TTTTTTTAAGTTTGAA
7422181 TTATTTTTA
1 TT-TTTTTA
7422190 TTTTTGTTTG
Statistics
Matches: 49, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
15 2 0.04
16 27 0.55
17 20 0.41
ACGTcount: A:0.23, C:0.00, G:0.12, T:0.65
Consensus pattern (16 bp):
TTTTTTTAAGTTTGAA
Found at i:7422156 original size:33 final size:33
Alignment explanation
Indices: 7422114--7422177 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
7422104 TTTCGATTTT
7422114 TTTTTTTTTAAGTTTGA-ATTATTTTAAGTTTAA
1 TTTTTTTTTAA-TTTGAGATTATTTTAAGTTTAA
* *
7422147 TTTTTTTTTAATTTGAGGTTTTTTTAAGTTT
1 TTTTTTTTTAATTTGAGATTATTTTAAGTTT
7422178 GAGTTATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 5 0.18
33 23 0.82
ACGTcount: A:0.22, C:0.00, G:0.11, T:0.67
Consensus pattern (33 bp):
TTTTTTTTTAATTTGAGATTATTTTAAGTTTAA
Found at i:7422188 original size:33 final size:33
Alignment explanation
Indices: 7422118--7422189 Score: 83
Period size: 33 Copynumber: 2.2 Consensus size: 33
7422108 GATTTTTTTT
* *
7422118 TTTTTAAGTTTGAATTATTTTAAGTTTAATTTT
1 TTTTTAAGTTTGAATTATTTTAAGTTTAAGTTA
* * *
7422151 TTTTTAA-TTTGAGGTTTTTTTAAGTTTGAGTTA
1 TTTTTAAGTTTGA-ATTATTTTAAGTTTAAGTTA
7422184 TTTTTA
1 TTTTTA
7422190 TTTTTGTTTG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
32 5 0.15
33 28 0.85
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.64
Consensus pattern (33 bp):
TTTTTAAGTTTGAATTATTTTAAGTTTAAGTTA
Found at i:7422212 original size:21 final size:21
Alignment explanation
Indices: 7422174--7422215 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
7422164 GTTTTTTTAA
** *
7422174 GTTTGAGTTATTTTTATTTTT
1 GTTTGAGTTAAGTATATTTTT
7422195 GTTTGAGTTAAGTATATTTTT
1 GTTTGAGTTAAGTATATTTTT
7422216 ACATCATTTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.19, C:0.00, G:0.17, T:0.64
Consensus pattern (21 bp):
GTTTGAGTTAAGTATATTTTT
Found at i:7430231 original size:49 final size:49
Alignment explanation
Indices: 7430145--7430263 Score: 150
Period size: 49 Copynumber: 2.4 Consensus size: 49
7430135 ATATTGATAA
* * * *
7430145 TTTTAAGGTTAGTTTTGTACTTTTCATGAAAAACAACTAAAACT-GAGTT
1 TTTTAAGGTTAGTTTTGTACTCTCCATCAAAAACAACT-AAACTCGAGTC
* * *
7430194 TTTTAAGGTTAGCTTTGTACTCTCCATCAAAACCAACTAAACTCTAGTC
1 TTTTAAGGTTAGTTTTGTACTCTCCATCAAAAACAACTAAACTCGAGTC
*
7430243 TTTAAAGGTTAGTTTTGTACT
1 TTTTAAGGTTAGTTTTGTACT
7430264 TTTTTGTCAA
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
48 5 0.08
49 55 0.92
ACGTcount: A:0.31, C:0.15, G:0.13, T:0.40
Consensus pattern (49 bp):
TTTTAAGGTTAGTTTTGTACTCTCCATCAAAAACAACTAAACTCGAGTC
Found at i:7431361 original size:19 final size:20
Alignment explanation
Indices: 7431337--7431388 Score: 72
Period size: 19 Copynumber: 2.6 Consensus size: 20
7431327 ATAATTGTGT
*
7431337 ATGTATCGATACAAA-TA-A
1 ATGTATCGATACAAAGCATA
7431355 CATGTATCGATACAAAGCATA
1 -ATGTATCGATACAAAGCATA
7431376 ATGTATCGATACA
1 ATGTATCGATACA
7431389 TCTGGGTGTG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 15 0.50
20 14 0.47
21 1 0.03
ACGTcount: A:0.44, C:0.15, G:0.13, T:0.27
Consensus pattern (20 bp):
ATGTATCGATACAAAGCATA
Found at i:7435243 original size:10 final size:10
Alignment explanation
Indices: 7435228--7435279 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
7435218 GGTTCAACTA
7435228 AAAAAAAGAG
1 AAAAAAAGAG
7435238 AAAAAAAGAG
1 AAAAAAAGAG
7435248 AAAGAAAAGAG
1 AAA-AAAAGAG
* *
7435259 AGAAGAAATAG
1 A-AAAAAAGAG
*
7435270 AAACAAAGAG
1 AAAAAAAGAG
7435280 GTAGAAAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
10 20 0.56
11 14 0.39
12 2 0.06
ACGTcount: A:0.73, C:0.02, G:0.23, T:0.02
Consensus pattern (10 bp):
AAAAAAAGAG
Found at i:7436295 original size:97 final size:97
Alignment explanation
Indices: 7436168--7436414 Score: 341
Period size: 97 Copynumber: 2.5 Consensus size: 97
7436158 AATTTTATTT
* * * *
7436168 ATCGGGGATACTCCAACCCTATTCTTCCGAGAGGATACTCCAACCCCGCTTTTAAACACATCAAA
1 ATCGAGGACACTCCAACCCCATTCCTCCGAGAGGATACTCCAACCCCGCTTTTAAACACATCAAA
7436233 GTTTAAATCTTATTCTCACTTAAATTGTCACC
66 GTTTAAATCTTATTCTCACTTAAATTGTCACC
* * * *
7436265 ATCGAGGACACTTCAACCCCATTCCTCCGAGAGGATACTCCAACCCCACTTTTAAACGCATTAAA
1 ATCGAGGACACTCCAACCCCATTCCTCCGAGAGGATACTCCAACCCCGCTTTTAAACACATCAAA
* * *
7436330 GTTTAAATTTTATTCTTACTTAAATTGTCATC
66 GTTTAAATCTTATTCTCACTTAAATTGTCACC
* * * ** *
7436362 ATCGGGGACACTCCAACCACATTCCTCCGAGGGGATACTGGAACCCCGTTTTT
1 ATCGAGGACACTCCAACCCCATTCCTCCGAGAGGATACTCCAACCCCGCTTTT
7436415 CAATTAAAAA
Statistics
Matches: 131, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
97 131 1.00
ACGTcount: A:0.29, C:0.29, G:0.13, T:0.29
Consensus pattern (97 bp):
ATCGAGGACACTCCAACCCCATTCCTCCGAGAGGATACTCCAACCCCGCTTTTAAACACATCAAA
GTTTAAATCTTATTCTCACTTAAATTGTCACC
Found at i:7441143 original size:19 final size:18
Alignment explanation
Indices: 7441121--7441169 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 18
7441111 AAATGAAAAA
7441121 AAAAACAAAAAAAAAGTGC
1 AAAAACAAAAAAAAAG-GC
*
7441140 AAAAACAAAATAAAAAGGG
1 AAAAACAAAA-AAAAAGGC
*
7441159 AACAACAAAAA
1 AAAAACAAAAA
7441170 TCAAAAAACA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 1 0.04
19 20 0.74
20 6 0.22
ACGTcount: A:0.76, C:0.10, G:0.10, T:0.04
Consensus pattern (18 bp):
AAAAACAAAAAAAAAGGC
Found at i:7442531 original size:27 final size:27
Alignment explanation
Indices: 7442489--7443230 Score: 746
Period size: 27 Copynumber: 27.1 Consensus size: 27
7442479 CAGTGGCATT
* *
7442489 CCTTTTAAAGTCCACAAGTCCGTGGCAT
1 CCTTTT-AAGTCCACAACTCCGTGGCAC
*
7442517 CATTTTAAGTCCACAACTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
** * *
7442544 CCTTTTAAGTCCACAGGTCTGTGGCAT
1 CCTTTTAAGTCCACAACTCCGTGGCAC
* * * *
7442571 CCTTTTACGTCAACAACTCCATGGCAT
1 CCTTTTAAGTCCACAACTCCGTGGCAC
* * *
7442598 CTTTTTAAGTCCACAAGTCTGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
* *
7442625 CCTTTTAAAGTCTACAACTCTGTGGCAC
1 CCTTTT-AAGTCCACAACTCCGTGGCAC
* *
7442653 CCTTTTAAGTCCACAAATCTGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
* * *
7442680 CCTTTTAAGTCCACAAGTCTGTGGCAT
1 CCTTTTAAGTCCACAACTCCGTGGCAC
* * * *
7442707 CTTTTTAAGTCCATAACTCCATGGTAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
*
7442734 CCTTTTAAAGTCCACAACTCCGTGGTAC
1 CCTTTT-AAGTCCACAACTCCGTGGCAC
* *
7442762 CTTTTTAAAATCCACAACTCCGTGGCAC
1 CCTTTT-AAGTCCACAACTCCGTGGCAC
* * * ** *
7442790 CCTTTTAAGTCTAGAAATATGTGGCAT
1 CCTTTTAAGTCCACAACTCCGTGGCAC
* * * * *
7442817 CCTTTTAAGTTCATAAGTCTGTGGCAT
1 CCTTTTAAGTCCACAACTCCGTGGCAC
* *
7442844 CTTTTTAAGTCCACAACTCTGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
* *
7442871 CCTTTTAAAGTCCATAACTCCATGGCAC
1 CCTTTT-AAGTCCACAACTCCGTGGCAC
*
7442899 CCTTTTAAGTCCACAACTCTGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
* *
7442926 CCTTTCAAGTCCACAAGTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
* *
7442953 CCTTTTAAGTCCATAACTCGGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
* **
7442980 CCTTTTAAAGTCCATAACTTTGTGGCAC
1 CCTTTT-AAGTCCACAACTCCGTGGCAC
7443008 CCTTTTAAAGTCCACAACTCCGTGGCAC
1 CCTTTT-AAGTCCACAACTCCGTGGCAC
* *
7443036 CCTTTTAATTTCACAACTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
* * * *
7443063 CCTTTTAAGTTCATAACTCTGTGGCAT
1 CCTTTTAAGTCCACAACTCCGTGGCAC
* *
7443090 CCTTTTAAAGTCCACAACTCGGTGGCAT
1 CCTTTT-AAGTCCACAACTCCGTGGCAC
* *
7443118 CTTTTTAAGTCCACAACTCCGTGGCAT
1 CCTTTTAAGTCCACAACTCCGTGGCAC
* * *
7443145 CCTTTCATGTCCACAACTCCGTGGCAT
1 CCTTTTAAGTCCACAACTCCGTGGCAC
* * * * *
7443172 TCTTTTAAGCCCACAAGTCAGTGACAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
* * * *
7443199 CCTTTCAAAGCCCACAAGTCAGTGGCAC
1 CCTTT-TAAGTCCACAACTCCGTGGCAC
7443227 CCTT
1 CCTT
7443231 CCAAAGCCCA
Statistics
Matches: 605, Mismatches: 103, Indels: 12
0.84 0.14 0.02
Matches are distributed among these distances:
27 405 0.67
28 200 0.33
ACGTcount: A:0.24, C:0.30, G:0.15, T:0.31
Consensus pattern (27 bp):
CCTTTTAAGTCCACAACTCCGTGGCAC
Found at i:7442641 original size:28 final size:28
Alignment explanation
Indices: 7442489--7443539 Score: 728
Period size: 28 Copynumber: 38.0 Consensus size: 28
7442479 CAGTGGCATT
* *
7442489 CCTTTTAAAGTCCACAAGTCCGTGGCAT
1 CCTTTTAAAGTCCACAAGTCTGTGGCAC
* * *
7442517 CATTTT-AAGTCCACAACTCCGTGGCAC
1 CCTTTTAAAGTCCACAAGTCTGTGGCAC
* *
7442544 CCTTTT-AAGTCCACAGGTCTGTGGCAT
1 CCTTTTAAAGTCCACAAGTCTGTGGCAC
* * * **
7442571 CCTTTT-ACGTCAACAACTCCATGGCA-
1 CCTTTTAAAGTCCACAAGTCTGTGGCAC
* *
7442597 TCTTTTTAAGTCCACAAGTCTGTGGCAC
1 CCTTTTAAAGTCCACAAGTCTGTGGCAC
* *
7442625 CCTTTTAAAGTCTACAACTCTGTGGCAC
1 CCTTTTAAAGTCCACAAGTCTGTGGCAC
*
7442653 CCTTTT-AAGTCCACAAATCTGTGGCAC
1 CCTTTTAAAGTCCACAAGTCTGTGGCAC
7442680 CCTTTT-AAGTCCACAAGTCTGTGGCA-
1 CCTTTTAAAGTCCACAAGTCTGTGGCAC
* * * * ** *
7442706 TCTTTTTAAGTCCATAACTCCATGGTAC
1 CCTTTTAAAGTCCACAAGTCTGTGGCAC
* * *
7442734 CCTTTTAAAGTCCACAACTCCGTGGTAC
1 CCTTTTAAAGTCCACAAGTCTGTGGCAC
* * * *
7442762 CTTTTTAAAATCCACAACTCCGTGGCAC
1 CCTTTTAAAGTCCACAAGTCTGTGGCAC
* * * * *
7442790 CCTTTT-AAGTCTAGAAATATGTGGCAT
1 CCTTTTAAAGTCCACAAGTCTGTGGCAC
* *
7442817 CCTTTT-AAGTTCATAAGTCTGTGGCA-
1 CCTTTTAAAGTCCACAAGTCTGTGGCAC
* * *
7442843 TCTTTTTAAGTCCACAACTCTGTGGCAC
1 CCTTTTAAAGTCCACAAGTCTGTGGCAC
* * **
7442871 CCTTTTAAAGTCCATAACTCCATGGCAC
1 CCTTTTAAAGTCCACAAGTCTGTGGCAC
*
7442899 CCTTTT-AAGTCCACAACTCTGTGGCAC
1 CCTTTTAAAGTCCACAAGTCTGTGGCAC
* *
7442926 CC-TTTCAAGTCCACAAGTCCGTGGCAC
1 CCTTTTAAAGTCCACAAGTCTGTGGCAC
* * *
7442953 CCTTTT-AAGTCCATAACTCGGTGGCAC
1 CCTTTTAAAGTCCACAAGTCTGTGGCAC
* * *
7442980 CCTTTTAAAGTCCATAACTTTGTGGCAC
1 CCTTTTAAAGTCCACAAGTCTGTGGCAC
* *
7443008 CCTTTTAAAGTCCACAACTCCGTGGCAC
1 CCTTTTAAAGTCCACAAGTCTGTGGCAC
* * * *
7443036 CCTTTT-AATTTCACAACTCCGTGGCAC
1 CCTTTTAAAGTCCACAAGTCTGTGGCAC
* * * *
7443063 CCTTTT-AAGTTCATAACTCTGTGGCAT
1 CCTTTTAAAGTCCACAAGTCTGTGGCAC
* *
7443090 CCTTTTAAAGTCCACAACTCGGTGGCA-
1 CCTTTTAAAGTCCACAAGTCTGTGGCAC
* * * * *
7443117 TCTTTTTAAGTCCACAACTCCGTGGCAT
1 CCTTTTAAAGTCCACAAGTCTGTGGCAC
* * * * *
7443145 CC-TTTCATGTCCACAACTCCGTGGCAT
1 CCTTTTAAAGTCCACAAGTCTGTGGCAC
* * * *
7443172 TCTTTT-AAGCCCACAAGTCAGTGACAC
1 CCTTTTAAAGTCCACAAGTCTGTGGCAC
* * *
7443199 CCTTTCAAAGCCCACAAGTCAGTGGCAC
1 CCTTTTAAAGTCCACAAGTCTGTGGCAC
** * **
7443227 CCTTCCAAAGCCCACAAGTCAATGGCAC
1 CCTTTTAAAGTCCACAAGTCTGTGGCAC
* ** * * *
7443255 CATTCCAAAGCCCACAAGTCAGTGGCAT
1 CCTTTTAAAGTCCACAAGTCTGTGGCAC
* * ** * *
7443283 CCTTTCAAAGCCCATGAGTCAGTAGCAC
1 CCTTTTAAAGTCCACAAGTCTGTGGCAC
* * * *
7443311 CCTTTCAAAATCCACAAGTCAGTGGCAT
1 CCTTTTAAAGTCCACAAGTCTGTGGCAC
* * *
7443339 TCTTTCAAAGTCCACAAGTCAT-TGACA-
1 CCTTTTAAAGTCCACAAGTC-TGTGGCAC
* * *
7443366 TCTTTTCAAAAGCCCACAAGT-TAGTGGCATTTT
1 CCTTTT--AAAGTCCACAAGTCT-GTGGCA---C
* * *
7443399 CTTTTTCAAAGCCCATAAGT-TAGTGGCAC
1 CCTTTT-AAAGTCCACAAGTCT-GTGGCAC
*
7443428 CCTTTTAAAGTCCACAAGTCAGTGGCATC
1 CCTTTTAAAGTCCACAAGTCTGTGGCA-C
* * *
7443457 CCCTTT-AAGTCCACAATTCTGTGGCTC
1 CCTTTTAAAGTCCACAAGTCTGTGGCAC
* *
7443484 CCTTTCAAAGCCCACAAGT-TAGTGGCAC
1 CCTTTTAAAGTCCACAAGTCT-GTGGCAC
** * *
7443512 CCTTCCAAAGCCCACAAGTCAGTGGCAC
1 CCTTTTAAAGTCCACAAGTCTGTGGCAC
7443540 ATTTCTCTAA
Statistics
Matches: 852, Mismatches: 144, Indels: 54
0.81 0.14 0.05
Matches are distributed among these distances:
26 18 0.02
27 379 0.44
28 404 0.47
29 27 0.03
32 20 0.02
33 4 0.00
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.29
Consensus pattern (28 bp):
CCTTTTAAAGTCCACAAGTCTGTGGCAC
Found at i:7442684 original size:109 final size:109
Alignment explanation
Indices: 7442481--7443230 Score: 829
Period size: 109 Copynumber: 6.9 Consensus size: 109
7442471 CCATGATTCA
* * *
7442481 GTGGCATTCCTTTTAAAGTCCACAAGTCCGTGGCATCATTTTAAGTCCACAACTCCGTGGCACCC
1 GTGGCA-TCCTTTT-AAGTCCACAAGTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCACCC
** * * *
7442546 TTTT-AAGTCCACAGGTCTGTGGCATCCTTTTACGTCAACAACTCC
64 TTTTAAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCC
* * * *
7442591 ATGGCATCTTTTTAAGTCCACAAGTCTGTGGCACCCTTTTAAAGTCTACAACTCTGTGGCACCCT
1 GTGGCATCCTTTTAAGTCCACAAGTCCGTGGCACCCTTTT-AAGTCCACAACTCTGTGGCACCCT
* * *
7442656 TTT-AAGTCCACAAATCTGTGGCACCCTTTTAAGTCCACAAGTCT
65 TTTAAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCC
* * * * * * * *
7442700 GTGGCATCTTTTTAAGTCCATAACTCCATGGTACCCTTTTAAAGTCCACAACTCCGTGGTACCTT
1 GTGGCATCCTTTTAAGTCCACAAGTCCGTGGCACCCTTTT-AAGTCCACAACTCTGTGGCACCCT
* * * * * **
7442765 TTTAAAATCCACAACTCCGTGGCACCCTTTTAAGTCTAGAAATAT
65 TTTAAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCC
* * * * *
7442810 GTGGCATCCTTTTAAGTTCATAAGTCTGTGGCATCTTTTTAAGTCCACAACTCTGTGGCACCCTT
1 GTGGCATCCTTTTAAGTCCACAAGTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCACCCTT
* ** *
7442875 TTAAAGTCCATAACTCCATGGCACCCTTTTAAGTCCACAACTCT
66 TTAAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCC
* * * *
7442919 GTGGCACCCTTTCAAGTCCACAAGTCCGTGGCACCCTTTTAAGTCCATAACTCGGTGGCACCCTT
1 GTGGCATCCTTTTAAGTCCACAAGTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCACCCTT
* *
7442984 TTAAAGTCCATAACTTTGTGGCACCCTTTTAAAGTCCACAACTCC
66 TTAAAGTCCACAACTCTGTGGCACCCTTTT-AAGTCCACAACTCC
* * * * * * *
7443029 GTGGCACCCTTTTAATTTCACAACTCCGTGGCACCCTTTTAAGTTCATAACTCTGTGGCATCCTT
1 GTGGCATCCTTTTAAGTCCACAAGTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCACCCTT
* * *
7443094 TTAAAGTCCACAACTCGGTGGCATCTTTTTAAGTCCACAACTCC
66 TTAAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCC
* * * ** * * * *
7443138 GTGGCATCCTTTCATGTCCACAACTCCGTGGCATTCTTTTAAGCCCACAAGTCAGTGACACCCTT
1 GTGGCATCCTTTTAAGTCCACAAGTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCACCCTT
* * * *
7443203 TCAAAGCCCACAAGTCAGTGGCACCCTT
66 TTAAAGTCCACAACTCTGTGGCACCCTT
7443231 CCAAAGCCCA
Statistics
Matches: 543, Mismatches: 94, Indels: 7
0.84 0.15 0.01
Matches are distributed among these distances:
108 24 0.04
109 352 0.65
110 167 0.31
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.31
Consensus pattern (109 bp):
GTGGCATCCTTTTAAGTCCACAAGTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCACCCTT
TTAAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCC
Done.