Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold25
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9553305
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 6276 characters in sequence are not A, C, G, or T
File 45 of 56
Found at i:7609004 original size:19 final size:20
Alignment explanation
Indices: 7608980--7609034 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 20
7608970 GTATCGATAT
*
7608980 ATTGTATCGATACAT-GATC-
1 ATTGTATCAATACATAGA-CA
*
7608999 ATTGTATCAATATATAGACA
1 ATTGTATCAATACATAGACA
7609019 ATTGTATCAATACATA
1 ATTGTATCAATACATA
7609035 AAACTGGCAG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 14 0.45
20 17 0.55
ACGTcount: A:0.40, C:0.13, G:0.11, T:0.36
Consensus pattern (20 bp):
ATTGTATCAATACATAGACA
Found at i:7609088 original size:20 final size:20
Alignment explanation
Indices: 7609063--7609116 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
7609053 CTACCACTGT
*
7609063 TTGTATCGATACA-GGGTACA
1 TTGTATCGATACATGAGTA-A
*
7609083 TTGTATCGATACATGATTAA
1 TTGTATCGATACATGAGTAA
7609103 TTGTATCGATACAT
1 TTGTATCGATACAT
7609117 TACTTGCAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 28 0.90
21 3 0.10
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.37
Consensus pattern (20 bp):
TTGTATCGATACATGAGTAA
Found at i:7619921 original size:22 final size:21
Alignment explanation
Indices: 7619896--7619940 Score: 56
Period size: 23 Copynumber: 2.1 Consensus size: 21
7619886 AGGTTAAGAT
7619896 AGAAC-CTATTAAAATCTCTTTA
1 AGAACTCTATTAAAAT-T-TTTA
*
7619918 AGAACTCTATTTAAATTTTTA
1 AGAACTCTATTAAAATTTTTA
7619939 AG
1 AG
7619941 TAATCTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 6 0.29
22 6 0.29
23 9 0.43
ACGTcount: A:0.40, C:0.13, G:0.07, T:0.40
Consensus pattern (21 bp):
AGAACTCTATTAAAATTTTTA
Found at i:7619940 original size:21 final size:23
Alignment explanation
Indices: 7619896--7619957 Score: 62
Period size: 22 Copynumber: 2.8 Consensus size: 23
7619886 AGGTTAAGAT
*
7619896 AGAAC-CTATTAAAATCTCTTTA
1 AGAACTCTATTTAAATCTCTTTA
7619918 AGAACTCTATTTAAAT-T-TTTA
1 AGAACTCTATTTAAATCTCTTTA
7619939 AGTAA-TCTTATTT-AATCTC
1 AG-AACTC-TATTTAAATCTC
7619958 ACACAAATAG
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
21 11 0.32
22 14 0.41
23 9 0.26
ACGTcount: A:0.37, C:0.15, G:0.05, T:0.44
Consensus pattern (23 bp):
AGAACTCTATTTAAATCTCTTTA
Found at i:7620336 original size:17 final size:19
Alignment explanation
Indices: 7620292--7620336 Score: 58
Period size: 21 Copynumber: 2.4 Consensus size: 19
7620282 CAATACATAA
7620292 ATATAAATATCAATACATTT
1 ATATAAATAT-AATACATTT
7620312 AGTATAAATAT-ATACATTT
1 A-TATAAATATAATACATTT
7620331 -TATAAA
1 ATATAAA
7620337 AAATGTGACT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 6 0.25
19 8 0.33
20 1 0.04
21 9 0.38
ACGTcount: A:0.51, C:0.07, G:0.02, T:0.40
Consensus pattern (19 bp):
ATATAAATATAATACATTT
Found at i:7620695 original size:15 final size:16
Alignment explanation
Indices: 7620675--7620707 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7620665 AAATTCAAAG
7620675 AAAAATA-CTAAATAT
1 AAAAATATCTAAATAT
*
7620690 AAAAATATTTAAATAT
1 AAAAATATCTAAATAT
7620706 AA
1 AA
7620708 GCTAATTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (16 bp):
AAAAATATCTAAATAT
Found at i:7621107 original size:15 final size:16
Alignment explanation
Indices: 7621088--7621124 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
7621078 AAATTTTAAG
7621088 ATCAAATTAAT-TAAA
1 ATCAAATTAATCTAAA
*
7621103 CTCAAATTAATCTAAA
1 ATCAAATTAATCTAAA
7621119 ATCAAA
1 ATCAAA
7621125 ATCAAAATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.30
Consensus pattern (16 bp):
ATCAAATTAATCTAAA
Found at i:7621123 original size:16 final size:15
Alignment explanation
Indices: 7621083--7621124 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
7621073 ATAAAAAATT
*
7621083 TTAAGATCAAATTAA
1 TTAAAATCAAATTAA
*
7621098 TTAAACTCAAATTAA
1 TTAAAATCAAATTAA
7621113 TCTAAAATCAAA
1 T-TAAAATCAAA
7621125 ATCAAAATCA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
15 14 0.61
16 9 0.39
ACGTcount: A:0.55, C:0.12, G:0.02, T:0.31
Consensus pattern (15 bp):
TTAAAATCAAATTAA
Found at i:7621854 original size:12 final size:12
Alignment explanation
Indices: 7621837--7621905 Score: 58
Period size: 12 Copynumber: 5.8 Consensus size: 12
7621827 AATACTTAAA
7621837 AATTTTTTATAT
1 AATTTTTTATAT
7621849 AATTTTTTATTAT
1 AATTTTTTA-TAT
7621862 CAAATTTCTTTAT-T
1 --AATTT-TTTATAT
7621876 AA--TTTTATAT
1 AATTTTTTATAT
*
7621886 -A-GTTTTATAT
1 AATTTTTTATAT
7621896 AATTTTTTAT
1 AATTTTTTAT
7621906 TTCTTTTTAA
Statistics
Matches: 48, Mismatches: 1, Indels: 16
0.74 0.02 0.25
Matches are distributed among these distances:
9 6 0.12
10 10 0.21
11 1 0.02
12 17 0.35
13 3 0.06
14 1 0.02
15 6 0.12
16 4 0.08
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (12 bp):
AATTTTTTATAT
Found at i:7623552 original size:6 final size:6
Alignment explanation
Indices: 7623541--7623585 Score: 63
Period size: 6 Copynumber: 7.2 Consensus size: 6
7623531 CTAAGAAAAA
*
7623541 AAATAT AAATATT AAAATTT AAATTT AAATTT AAATTT AAATTT A
1 AAATTT AAAT-TT -AAATTT AAATTT AAATTT AAATTT AAATTT A
7623586 TTTATATATT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
6 29 0.81
7 3 0.08
8 4 0.11
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (6 bp):
AAATTT
Found at i:7623596 original size:18 final size:17
Alignment explanation
Indices: 7623555--7623589 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
7623545 ATAAATATTA
7623555 AAATTTAAATTTAAATTT
1 AAATTTAAATTT-AATTT
7623573 AAATTTAAATTT-ATTT
1 AAATTTAAATTTAATTT
7623589 A
1 A
7623590 TATATTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
18 12 0.71
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
AAATTTAAATTTAATTT
Found at i:7625075 original size:15 final size:15
Alignment explanation
Indices: 7625037--7625094 Score: 50
Period size: 15 Copynumber: 3.9 Consensus size: 15
7625027 ATATTATATT
7625037 TTTAATTTTTTTAAA
1 TTTAATTTTTTTAAA
*
7625052 --AAATATTTTTTAAA
1 TTTAAT-TTTTTTAAA
*
7625066 TTTAATTTTTAGT-AA
1 TTTAATTTTT-TTAAA
7625081 TTTAATTATTTTTA
1 TTTAATT-TTTTTA
7625095 TTAAGCTTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 11
0.69 0.08 0.23
Matches are distributed among these distances:
13 3 0.09
14 9 0.27
15 14 0.42
16 7 0.21
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (15 bp):
TTTAATTTTTTTAAA
Found at i:7626878 original size:18 final size:18
Alignment explanation
Indices: 7626855--7626889 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
7626845 ATAATTTAAG
7626855 AATTAAATTT-ATTTGATC
1 AATT-AATTTAATTTGATC
7626873 AATTAATTTAATTTGAT
1 AATTAATTTAATTTGAT
7626890 TTTTAAAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.40, C:0.03, G:0.06, T:0.51
Consensus pattern (18 bp):
AATTAATTTAATTTGATC
Found at i:7642643 original size:166 final size:166
Alignment explanation
Indices: 7642136--7642643 Score: 563
Period size: 166 Copynumber: 3.1 Consensus size: 166
7642126 TAAATTACAA
* * * ** *
7642136 AGTTTTCTTCTTCTTAAATTTTTTC-GGAAGGATTTTCATGAGTTTAAAATTTTT-AAATTTCAT
1 AGTTTTCTACTTCGTAAATTTTTTCGGGAA-GATTTTCTTGA-TTTTTAATTTTTAAAATCT-AT
* * *
7642199 CAAATATTATTATTTGATTT-ATAGTAAATCAGTTTTCAAAAATTCATTCATTTTCACGAGTTTT
63 AAAATATTATTATTT-ATTTCATAGTAAATCAGTTTTAAAAAATTCATTCATTTTCATGAGTTTT
* * * *
7642263 -TAAATTTTTTCCTTGAAATTTTTCTATTTTT-GAAATAT-G
127 GT--ATTTTTTCCTTGAAATTCTCCTTTTTTTCGAAAAATCG
* * * *
7642302 AAGTTTTTTACTTCGTAAATTTTTTCAAGGGGAG-TTTTCTTGGTTTTTAATTTTTAAAATCCAT
1 -AGTTTTCTACTTCGTAAATTTTTTC--GGGAAGATTTTCTTGATTTTTAATTTTTAAAATCTAT
* * *
7642366 AAAATATTATTATTTATTTCATA-AAAATTAGTTTTAAAAAATTCATTAATTTTCATGAGTTTCT
63 AAAATATTATTATTTATTTCATAGTAAATCAGTTTTAAAAAATTCATTCATTTTCATGAGTTT-T
* * *
7642430 GAATTTTTTCCTTGAAATTCTCC-TATTTTCGAAAAA-CAA
127 GTATTTTTTCCTTGAAATTCTCCTTTTTTTCGAAAAATC-G
*
7642469 AATTTTCTACTTCGTAAATTTTTTCGGGAAGATTTTTCTTGATTTTTAATTTTTAAAATCTATAA
1 AGTTTTCTACTTCGTAAATTTTTTCGGGAAGA-TTTTCTTGATTTTTAATTTTTAAAATCTATAA
* *
7642534 AATATTATTATTTATTTCATAGTAAATCAAGGTTT-AAAAATTCATTCATTTTCATGAATTTTGT
65 AATATTATTATTTATTTCATAGTAAATC-AGTTTTAAAAAATTCATTCATTTTCATGAGTTTTGT
* *
7642598 ATTTTTTCTTTGAAA-TCCCCTTTTTTTCGAAAAATCG
129 ATTTTTTCCTTGAAATTCTCCTTTTTTTCGAAAAATCG
7642635 AGTTTTCTA
1 AGTTTTCTA
7642644 TTCCATAAAT
Statistics
Matches: 286, Mismatches: 39, Indels: 33
0.80 0.11 0.09
Matches are distributed among these distances:
164 5 0.02
165 8 0.03
166 172 0.60
167 81 0.28
168 16 0.06
169 1 0.00
170 3 0.01
ACGTcount: A:0.31, C:0.10, G:0.09, T:0.50
Consensus pattern (166 bp):
AGTTTTCTACTTCGTAAATTTTTTCGGGAAGATTTTCTTGATTTTTAATTTTTAAAATCTATAAA
ATATTATTATTTATTTCATAGTAAATCAGTTTTAAAAAATTCATTCATTTTCATGAGTTTTGTAT
TTTTTCCTTGAAATTCTCCTTTTTTTCGAAAAATCG
Found at i:7643292 original size:11 final size:11
Alignment explanation
Indices: 7643262--7643309 Score: 69
Period size: 11 Copynumber: 4.2 Consensus size: 11
7643252 CTGAAAGAGG
7643262 GAGAAAAAATGA
1 GAGAAAAAA-GA
7643274 GAGAAAAAAAGA
1 GAG-AAAAAAGA
*
7643286 AAGAAAAAAGA
1 GAGAAAAAAGA
7643297 GAGAAAAAAGA
1 GAGAAAAAAGA
7643308 GA
1 GA
7643310 TTTTAGTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
11 20 0.61
12 7 0.21
13 6 0.18
ACGTcount: A:0.73, C:0.00, G:0.25, T:0.02
Consensus pattern (11 bp):
GAGAAAAAAGA
Found at i:7644018 original size:29 final size:29
Alignment explanation
Indices: 7643982--7644039 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
7643972 CCACATAAGG
7643982 ACTAAATTGATGAAATATAAAAAATAAAA
1 ACTAAATTGATGAAATATAAAAAATAAAA
7644011 ACTAAATTGATGAAATATAAAAAATAAAA
1 ACTAAATTGATGAAATATAAAAAATAAAA
7644040 GGGGTTAGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.66, C:0.03, G:0.07, T:0.24
Consensus pattern (29 bp):
ACTAAATTGATGAAATATAAAAAATAAAA
Found at i:7647635 original size:52 final size:52
Alignment explanation
Indices: 7647565--7647685 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
7647555 GAAAATTTAT
*
7647565 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
*
7647617 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
7647669 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
7647686 AAGATCAGTG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:7647698 original size:52 final size:51
Alignment explanation
Indices: 7647565--7647705 Score: 212
Period size: 52 Copynumber: 2.7 Consensus size: 51
7647555 GAAAATTTAT
7647565 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
* *
7647617 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
*
7647669 CTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
7647706 ATGTATCGAT
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
51 2 0.02
52 80 0.98
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (51 bp):
CTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:7647712 original size:13 final size:13
Alignment explanation
Indices: 7647694--7647718 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7647684 CAAAGATCAG
7647694 TGTATCGATACAA
1 TGTATCGATACAA
7647707 TGTATCGATACA
1 TGTATCGATACA
7647719 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:7647802 original size:13 final size:13
Alignment explanation
Indices: 7647784--7647808 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7647774 CAAAAAAATA
7647784 TGTATCGATACAT
1 TGTATCGATACAT
7647797 TGTATCGATACA
1 TGTATCGATACA
7647809 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:7647804 original size:33 final size:33
Alignment explanation
Indices: 7647762--7647828 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
7647752 AGTAGCTTAA
7647762 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
7647795 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
7647828 A
1 A
7647829 GATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:7648822 original size:171 final size:168
Alignment explanation
Indices: 7648627--7649011 Score: 586
Period size: 171 Copynumber: 2.3 Consensus size: 168
7648617 TTTTAAAGAT
*
7648627 GATGAAGGTGACAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGA-AGATGAGAAA
1 GATGAA-GTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGATA-ATGAGAAA
* *
7648691 AGTGATCAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCTTGAAGATGAGAAAAAGG
64 AGTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGG
* *
7648756 ATGTCAACGTGCTGATTCAAGGCCAGC-TACATTGAACT-TAAA
129 ATGTCAACGTGCTGATTCAAGGCCAGCTTA-A-AG-A-TGGAAA
* *
7648798 GATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAAATGATAATGAGAAAA
1 GATGAAG-TGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGATAATGAGAAAA
7648863 GTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGA
65 GTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGA
7648928 TGTCAACGTGCTGATTCAAGGCCAGCTTAAAGATGGAAA
130 TGTCAACGTGCTGATTCAAGGCCAGCTTAAAGATGGAAA
*
7648967 -AT---GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG
1 GATGAAGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAG
7649012 GTGCCAATGT
Statistics
Matches: 201, Mismatches: 9, Indels: 15
0.89 0.04 0.07
Matches are distributed among these distances:
164 40 0.20
165 1 0.00
168 3 0.01
169 4 0.02
170 2 0.01
171 148 0.74
172 3 0.01
ACGTcount: A:0.37, C:0.14, G:0.25, T:0.24
Consensus pattern (168 bp):
GATGAAGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGATAATGAGAAAAG
TGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGAT
GTCAACGTGCTGATTCAAGGCCAGCTTAAAGATGGAAA
Found at i:7648959 original size:45 final size:42
Alignment explanation
Indices: 7648907--7649039 Score: 126
Period size: 43 Copynumber: 3.1 Consensus size: 42
7648897 ACGATATTGG
* *
7648907 GCTTAAAGATGAGAAAAAGGATGTCAACGTGCTGATTCAAGGCCA
1 GCTTAAAGATG-G-AAAAGG-TGCCAACATGCTGATTCAAGGCCA
* *
7648952 GCTTAAAGATGGAAAATGTGCCAATATGCTGATTCAAGGCCA
1 GCTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCA
* * **
7648994 GC-TATA-TTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCA
1 GCTTAAAGATGGA---AAAGGTGCCAACATGCTGATTCAAGGCCA
7649037 GCT
1 GCT
7649040 ACATTGGACT
Statistics
Matches: 76, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
40 4 0.05
41 3 0.04
42 23 0.30
43 34 0.45
44 1 0.01
45 11 0.14
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (42 bp):
GCTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCA
Found at i:7649030 original size:43 final size:43
Alignment explanation
Indices: 7648935--7649054 Score: 156
Period size: 43 Copynumber: 2.8 Consensus size: 43
7648925 GGATGTCAAC
* *
7648935 GTGCTGATTCAAGGCCAGCTTAAAGATGGA---AAATGTGCCAAT
1 GTGCTGATTCAAGGCCAGC-TAAA-TTGGACTTAAAGGTGCCAAT
* *
7648977 ATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAAT
1 GTGCTGATTCAAGGCCAGCTAAATTGGACTTAAAGGTGCCAAT
*
7649020 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAG
1 GTGCTGATTCAAGGCCAGCTAAATTGGACTTAAAG
7649055 ATAAAGAGGA
Statistics
Matches: 69, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
40 4 0.06
41 3 0.04
42 18 0.26
43 44 0.64
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (43 bp):
GTGCTGATTCAAGGCCAGCTAAATTGGACTTAAAGGTGCCAAT
Found at i:7649427 original size:171 final size:168
Alignment explanation
Indices: 7649232--7649616 Score: 604
Period size: 171 Copynumber: 2.3 Consensus size: 168
7649222 TTTTAGAGAT
7649232 GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGA-AGATGAGAAA
1 GATGAA-GTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGATA-ATGAGAAA
7649296 AGTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCCTAAAGATGAGAAAAAGG
64 AGTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCCTAAAGATGAGAAAAAGG
* *
7649361 ATGTCAACGTGCTGATTCAAGGCCAGC-TACATTGAACT-TAAA
129 ATGTCAACGTGCTGATTCAAGGCCAGCTTA-A-AG-A-TGGAAA
* *
7649403 GATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAAATGATAATGAGAAAA
1 GATGAAG-TGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGATAATGAGAAAA
*
7649468 GTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGA
65 GTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCCTAAAGATGAGAAAAAGGA
7649533 TGTCAACGTGCTGATTCAAGGCCAGCTTAAAGATGGAAA
130 TGTCAACGTGCTGATTCAAGGCCAGCTTAAAGATGGAAA
*
7649572 -AT---GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG
1 GATGAAGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAG
7649617 GTGCCAATGT
Statistics
Matches: 203, Mismatches: 7, Indels: 15
0.90 0.03 0.07
Matches are distributed among these distances:
164 40 0.20
165 1 0.00
168 3 0.01
169 4 0.02
170 2 0.01
171 150 0.74
172 3 0.01
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (168 bp):
GATGAAGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGATAATGAGAAAAG
TGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCCTAAAGATGAGAAAAAGGAT
GTCAACGTGCTGATTCAAGGCCAGCTTAAAGATGGAAA
Found at i:7649449 original size:49 final size:49
Alignment explanation
Indices: 7649303--7649456 Score: 146
Period size: 49 Copynumber: 3.0 Consensus size: 49
7649293 AAAAGTGATA
* * * * *
7649303 AAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCCTAAAGATGAG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT--G
* ** * * *
7649354 AAAAAGGATGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATG
1 ---AA-GATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
*
7649407 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAAATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
7649456 A
1 A
7649457 TAATGAGAAA
Statistics
Matches: 81, Mismatches: 18, Indels: 7
0.76 0.17 0.07
Matches are distributed among these distances:
49 41 0.51
50 2 0.02
53 1 0.01
54 2 0.02
55 35 0.43
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.24
Consensus pattern (49 bp):
AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
Found at i:7649564 original size:45 final size:42
Alignment explanation
Indices: 7649512--7649644 Score: 126
Period size: 43 Copynumber: 3.1 Consensus size: 42
7649502 ACGATATTGG
* *
7649512 GCTTAAAGATGAGAAAAAGGATGTCAACGTGCTGATTCAAGGCCA
1 GCTTAAAGATG-G-AAAAGG-TGCCAACATGCTGATTCAAGGCCA
* *
7649557 GCTTAAAGATGGAAAATGTGCCAATATGCTGATTCAAGGCCA
1 GCTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCA
* * **
7649599 GC-TATA-TTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCA
1 GCTTAAAGATGGA---AAAGGTGCCAACATGCTGATTCAAGGCCA
7649642 GCT
1 GCT
7649645 ACATTGGACT
Statistics
Matches: 76, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
40 4 0.05
41 3 0.04
42 23 0.30
43 34 0.45
44 1 0.01
45 11 0.14
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (42 bp):
GCTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCA
Found at i:7649570 original size:605 final size:604
Alignment explanation
Indices: 7648408--7649665 Score: 2268
Period size: 605 Copynumber: 2.1 Consensus size: 604
7648398 GTTTTGCAAT
* * * * * * * *
7648408 GTGCCACTGTGCAGATTCAAGGCCTGCCACACTGGACTTAAAGATGATGAGGATGAAGAGCGATA
1 GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGAGGAGGAAGAGCGATA
* * *
7648473 AAAGGACCAATACGTTGATTCACGGCCAACGATATTGAGTTTAGAGATGAGAAAAGGGATAAAGG
66 AAAGGACCAATACGTTGATTCACGGCCAACGATATTGAGTTGAAAGATGAGAAAAGGGATAAAAG
* * *
7648538 AGCCAATATGCGGCTAGCGATATTAGGCTGGAGGATGCAAAAAATGACAATGTGCTGATTCATGA
131 AGCCAATATGCGGCTAGCGATATTAGGCTCGAAGATGCAAAAAATGACAATGTGCTGATTCATAA
7648603 CCAGCGTCATTGGGTTTTAAAGATGATGAAGGTGACAATATGCTGATTCAAGGCCAGCAATATTG
196 CCAGCGTCATTGGGTTTTAAAGATGATGAAGGTGACAATATGCTGATTCAAGGCCAGCAATATTG
*
7648668 GACTTAAAGATGAAGATGAGAAAAGTGATCAAGATGCCAATATGTTGATTCATGGCCAACGATAT
261 GACTTAAAGATGAAGATGAGAAAAGTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATAT
* *
7648733 TGGGCTTGAAGATGAGAAAAAGGATGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAA
326 TGGGCCTAAAGATGAGAAAAAGGATGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAA
7648798 GATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAAATGATAATGAGAAAA
391 GATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAAATGATAATGAGAAAA
7648863 GTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGA
456 GTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGA
7648928 TGTCAACGTGCTGATTCAAGGCCAGCTTAAAGATGGAAAATGTGCCAATATGCTGATTCAAGGCC
521 TGTCAACGTGCTGATTCAAGGCCAGCTTAAAGATGGAAAATGTGCCAATATGCTGATTCAAGGCC
7648993 AGCTATATTGGACTTAAAG
586 AGCTATATTGGACTTAAAG
*
7649012 GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGAGGAGGGAA-AGTGAT
1 GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGAGGA-GGAAGAGCGAT
* *
7649076 AAAAGGACCAATACGTTGATTCACGGCCAACGATATTGGGTTGAAATATGAGAAGAA-GGATAAA
65 AAAAGGACCAATACGTTGATTCACGGCCAACGATATTGAGTTGAAAGATGAGAA-AAGGGATAAA
*
7649140 AGAGCCAATATGCGGCTAGCGATATTAGGCTCGAAGATGCGAAAAATGACAATGTGCTGATTCAT
129 AGAGCCAATATGCGGCTAGCGATATTAGGCTCGAAGATGCAAAAAATGACAATGTGCTGATTCAT
* *
7649205 AACCAGCGTCATTGGGTTTTTAGAGATGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATA
194 AACCAGCGTCATTGGG-TTTTAAAGATGATGAAGGTGACAATATGCTGATTCAAGGCCAGCAATA
7649270 TTGGACTTAAAGATGAAGATGAGAAAAGTGATAAAGATGCCAATATGTTGATTCATGGCCAACGA
258 TTGGACTTAAAGATGAAGATGAGAAAAGTGATAAAGATGCCAATATGTTGATTCATGGCCAACGA
7649335 TATTGGGCCTAAAGATGAGAAAAAGGATGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTT
323 TATTGGGCCTAAAGATGAGAAAAAGGATGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTT
7649400 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAAATGATAATGAGA
388 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAAATGATAATGAGA
7649465 AAAGTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAA
453 AAAGTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAA
7649530 GGATGTCAACGTGCTGATTCAAGGCCAGCTTAAAGATGGAAAATGTGCCAATATGCTGATTCAAG
518 GGATGTCAACGTGCTGATTCAAGGCCAGCTTAAAGATGGAAAATGTGCCAATATGCTGATTCAAG
7649595 GCCAGCTATATTGGACTTAAAG
583 GCCAGCTATATTGGACTTAAAG
7649617 GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAG
1 GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAG
7649666 GTGCCAATGT
Statistics
Matches: 628, Mismatches: 23, Indels: 5
0.96 0.04 0.01
Matches are distributed among these distances:
604 184 0.29
605 444 0.71
ACGTcount: A:0.36, C:0.15, G:0.26, T:0.24
Consensus pattern (604 bp):
GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGAGGAGGAAGAGCGATA
AAAGGACCAATACGTTGATTCACGGCCAACGATATTGAGTTGAAAGATGAGAAAAGGGATAAAAG
AGCCAATATGCGGCTAGCGATATTAGGCTCGAAGATGCAAAAAATGACAATGTGCTGATTCATAA
CCAGCGTCATTGGGTTTTAAAGATGATGAAGGTGACAATATGCTGATTCAAGGCCAGCAATATTG
GACTTAAAGATGAAGATGAGAAAAGTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATAT
TGGGCCTAAAGATGAGAAAAAGGATGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAA
GATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAAATGATAATGAGAAAA
GTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGA
TGTCAACGTGCTGATTCAAGGCCAGCTTAAAGATGGAAAATGTGCCAATATGCTGATTCAAGGCC
AGCTATATTGGACTTAAAG
Found at i:7649667 original size:49 final size:43
Alignment explanation
Indices: 7649540--7649751 Score: 268
Period size: 43 Copynumber: 4.8 Consensus size: 43
7649530 GGATGTCAAC
* * *
7649540 GTGCTGATTCAAGGCCAGCTTAAAGATGGA---AAATGTGCCAAT
1 GTGCTGATTCAAGGCCAGC-TACA-TTGGACTTAAAGGTGCCAAT
* *
7649582 ATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAAT
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGCCAAT
7649625 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAAT
1 GTGCTGATTCAAGGCCAGCTACATTGGAC-T-----TAAAGGTGCCAAT
* *
7649674 GTGCTGAGTCAAGGCCAGCTACATTAGACTTAAAGGTGCCAAT
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGCCAAT
7649717 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAG
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAG
7649752 ATAAAGGTGC
Statistics
Matches: 151, Mismatches: 10, Indels: 17
0.85 0.06 0.10
Matches are distributed among these distances:
40 4 0.03
41 3 0.02
42 18 0.12
43 84 0.56
44 1 0.01
48 1 0.01
49 40 0.26
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (43 bp):
GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGCCAAT
Found at i:7649689 original size:92 final size:92
Alignment explanation
Indices: 7649574--7649763 Score: 344
Period size: 92 Copynumber: 2.1 Consensus size: 92
7649564 GATGGAAAAT
* * *
7649574 GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGG
1 GTGCCAATATGCTGAGTCAAGGCCAGCTACATTAGACTTAAAGGTGCCAATGTGCTGATTCAAGG
7649639 CCAGCTACATTGGACTTAAAGATAAAG
66 CCAGCTACATTGGACTTAAAGATAAAG
*
7649666 GTGCCAATGTGCTGAGTCAAGGCCAGCTACATTAGACTTAAAGGTGCCAATGTGCTGATTCAAGG
1 GTGCCAATATGCTGAGTCAAGGCCAGCTACATTAGACTTAAAGGTGCCAATGTGCTGATTCAAGG
7649731 CCAGCTACATTGGACTTAAAGATAAAG
66 CCAGCTACATTGGACTTAAAGATAAAG
7649758 GTGCCA
1 GTGCCA
7649764 CGGAGTTATG
Statistics
Matches: 94, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 94 1.00
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (92 bp):
GTGCCAATATGCTGAGTCAAGGCCAGCTACATTAGACTTAAAGGTGCCAATGTGCTGATTCAAGG
CCAGCTACATTGGACTTAAAGATAAAG
Found at i:7649812 original size:31 final size:31
Alignment explanation
Indices: 7649741--7649814 Score: 96
Period size: 31 Copynumber: 2.4 Consensus size: 31
7649731 CCAGCTACAT
*
7649741 TGGACTTAAAGATAAAGGTGCCACGGAGTTA
1 TGGACTTAAAGATAAAGGTGCCACGGAATTA
* *
7649772 TGGACTTAAAGAT-GAGGTGCCACGGAATTG
1 TGGACTTAAAGATAAAGGTGCCACGGAATTA
*
7649802 TGGGCTTTAAAGA
1 TGGAC-TTAAAGA
7649815 AAAAATGCCA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
30 18 0.47
31 20 0.53
ACGTcount: A:0.32, C:0.12, G:0.31, T:0.24
Consensus pattern (31 bp):
TGGACTTAAAGATAAAGGTGCCACGGAATTA
Found at i:7650870 original size:16 final size:16
Alignment explanation
Indices: 7650849--7650884 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
7650839 CTCACCGAGA
*
7650849 TTTTCTGTTTTGTTTT
1 TTTTCTGTTTTCTTTT
*
7650865 TTTTCTTTTTTCTTTT
1 TTTTCTGTTTTCTTTT
7650881 TTTT
1 TTTT
7650885 TGTGTTTGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.00, C:0.08, G:0.06, T:0.86
Consensus pattern (16 bp):
TTTTCTGTTTTCTTTT
Found at i:7652325 original size:12 final size:12
Alignment explanation
Indices: 7652288--7652319 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
7652278 TGGTGCATTA
7652288 TTGGCATTAGGG
1 TTGGCATTAGGG
7652300 TTGGCATTAGGG
1 TTGGCATTAGGG
7652312 TTGGCATT
1 TTGGCATT
7652320 TAGGTTAGCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.16, C:0.09, G:0.38, T:0.38
Consensus pattern (12 bp):
TTGGCATTAGGG
Found at i:7658154 original size:52 final size:52
Alignment explanation
Indices: 7658084--7658204 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
7658074 GAAAATTTAT
*
7658084 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
*
7658136 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
7658188 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
7658205 AAGATCAGTG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:7658217 original size:52 final size:51
Alignment explanation
Indices: 7658084--7658224 Score: 212
Period size: 52 Copynumber: 2.7 Consensus size: 51
7658074 GAAAATTTAT
7658084 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
* *
7658136 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
*
7658188 CTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
7658225 ATGTATCGAT
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
51 2 0.02
52 80 0.98
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (51 bp):
CTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:7658231 original size:13 final size:13
Alignment explanation
Indices: 7658213--7658237 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7658203 CAAAGATCAG
7658213 TGTATCGATACAA
1 TGTATCGATACAA
7658226 TGTATCGATACA
1 TGTATCGATACA
7658238 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:7658321 original size:13 final size:13
Alignment explanation
Indices: 7658303--7658327 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7658293 CAAAAAAATA
7658303 TGTATCGATACAT
1 TGTATCGATACAT
7658316 TGTATCGATACA
1 TGTATCGATACA
7658328 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:7658323 original size:33 final size:33
Alignment explanation
Indices: 7658281--7658347 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
7658271 AGTAGCTTAA
7658281 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
7658314 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
7658347 A
1 A
7658348 GATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:7660215 original size:33 final size:33
Alignment explanation
Indices: 7660159--7660223 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
7660149 TACAAGCCAA
* * *
7660159 TGTATCGATACAATTTTTTGTGTATTGATACAT
1 TGTATCGATACAATCTTTGGTGTATCGATACAT
7660192 TGTATCGATAC-ATACTTTGGTGTATCGATACA
1 TGTATCGATACAAT-CTTTGGTGTATCGATACA
7660224 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 2 0.07
33 26 0.93
ACGTcount: A:0.28, C:0.12, G:0.17, T:0.43
Consensus pattern (33 bp):
TGTATCGATACAATCTTTGGTGTATCGATACAT
Found at i:7660305 original size:20 final size:20
Alignment explanation
Indices: 7660280--7660325 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
7660270 TTTTTGATGC
7660280 ATCGATACATTGCAA-CATGT
1 ATCGATACATTG-AATCATGT
* *
7660300 ATCGATACTTTGAATTATGT
1 ATCGATACATTGAATCATGT
7660320 ATCGAT
1 ATCGAT
7660326 GCTTTTAAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 2 0.09
20 21 0.91
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (20 bp):
ATCGATACATTGAATCATGT
Found at i:7663592 original size:7 final size:7
Alignment explanation
Indices: 7663580--7663625 Score: 53
Period size: 7 Copynumber: 7.0 Consensus size: 7
7663570 TCTAAATAAA
7663580 AAAAAAG
1 AAAAAAG
7663587 AAAAAAG
1 AAAAAAG
7663594 AAAAAAG
1 AAAAAAG
7663601 --AAAAG
1 AAAAAAG
*
7663606 AAAAATG
1 AAAAAAG
*
7663613 -AAAATG
1 AAAAAAG
7663619 AAAAAAG
1 AAAAAAG
7663626 CGTGCAATGA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
5 5 0.15
6 6 0.18
7 23 0.68
ACGTcount: A:0.80, C:0.00, G:0.15, T:0.04
Consensus pattern (7 bp):
AAAAAAG
Found at i:7663597 original size:12 final size:12
Alignment explanation
Indices: 7663589--7663625 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
7663579 AAAAAAAGAA
7663589 AAAAGAAAAAAG
1 AAAAGAAAAAAG
*
7663601 AAAAGAAAAATG
1 AAAAGAAAAAAG
7663613 AAAATGAAAAAAG
1 AAAA-GAAAAAAG
7663626 CGTGCAATGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 15 0.68
13 7 0.32
ACGTcount: A:0.78, C:0.00, G:0.16, T:0.05
Consensus pattern (12 bp):
AAAAGAAAAAAG
Found at i:7663599 original size:19 final size:19
Alignment explanation
Indices: 7663577--7663616 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
7663567 TTCTCTAAAT
7663577 AAAAAAAAAGAAAAAAGAA
1 AAAAAAAAAGAAAAAAGAA
* *
7663596 AAAAGAAAAGAAAAATGAA
1 AAAAAAAAAGAAAAAAGAA
7663615 AA
1 AA
7663617 TGAAAAAAGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (19 bp):
AAAAAAAAAGAAAAAAGAA
Found at i:7663683 original size:17 final size:17
Alignment explanation
Indices: 7663663--7663695 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
7663653 AGAGAAAAAA
7663663 ATGA-AAAATGAAAGAAG
1 ATGAGAAAAT-AAAGAAG
7663680 ATGAGAAAATAAAGAA
1 ATGAGAAAATAAAGAA
7663696 ACACTGCATC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.67, C:0.00, G:0.21, T:0.12
Consensus pattern (17 bp):
ATGAGAAAATAAAGAAG
Found at i:7665926 original size:48 final size:48
Alignment explanation
Indices: 7665787--7666133 Score: 315
Period size: 48 Copynumber: 7.2 Consensus size: 48
7665777 TAATTATATT
* * *
7665787 TGGTCAAACTTTTTTCATCGCTCATTTGACTATATTGGTGTTAGGGCC
1 TGGTCAAACTCTTTTCATCTCTTATTTGACTATATTGGTGTTAGGGCC
* * * ** * *
7665835 TGGTCAAACTCTTTCCA-CCCTTGTTTGACTATATTGGCATTAGGACT
1 TGGTCAAACTCTTTTCATCTCTTATTTGACTATATTGGTGTTAGGGCC
* * *
7665882 TAGTCAAATTCTTTTCATCTCTTATTTGACTCTATTGGTGTTAGGGCC
1 TGGTCAAACTCTTTTCATCTCTTATTTGACTATATTGGTGTTAGGGCC
* * * * * *
7665930 TGGTTAAACTCTTTTCA-CTCTTTTTTTTATTGTATTGGTGTTAAGGCC
1 TGGTCAAACTCTTTTCATCTC-TTATTTGACTATATTGGTGTTAGGGCC
*** * * * * *
7665978 TGGTCAAACTCAAGTCTTCCCCTGTTTGACTATATTGGTGTTAGGACC
1 TGGTCAAACTCTTTTCATCTCTTATTTGACTATATTGGTGTTAGGGCC
* *
7666026 TGATCAAACTCTTTTCATC-CTTTGTTTGACTATATTGGTGTTAGGGCC
1 TGGTCAAACTCTTTTCATCTC-TTATTTGACTATATTGGTGTTAGGGCC
* * * * *
7666074 TAGTCAAACTCTTTTTATCTC-TAGTTTGATTTTATTAGTGTTAGGGCC
1 TGGTCAAACTCTTTTCATCTCTTA-TTTGACTATATTGGTGTTAGGGCC
* *
7666122 TAGTGAAACTCT
1 TGGTCAAACTCT
7666134 CCTCTTTACT
Statistics
Matches: 238, Mismatches: 55, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
47 42 0.18
48 193 0.81
49 3 0.01
ACGTcount: A:0.20, C:0.19, G:0.18, T:0.43
Consensus pattern (48 bp):
TGGTCAAACTCTTTTCATCTCTTATTTGACTATATTGGTGTTAGGGCC
Found at i:7666116 original size:144 final size:142
Alignment explanation
Indices: 7665789--7666132 Score: 379
Period size: 144 Copynumber: 2.4 Consensus size: 142
7665779 ATTATATTTG
* * **
7665789 GTCAAACT-TTTTTCATCGCTCATTTGACTATATTGGTGTTAGGGCCTGGTCAAACTCTTTCCAC
1 GTCAAACTCTTTTT-ATCTCT-ATTTGATTATATTGGTGTTAGGGCCTGGTCAAACTCAGTCCAC
* * * *
7665853 CCTTGTTTGACTATATTGGCATTAGGACTTAGTCAAATTCTTTTCATCTCTTATTTGACTCTATT
64 CCCTGTTTGACTATATTGGCATTAGGACTGAGTCAAACTCTTTTCATCTCTTATTTGACTATATT
*
7665918 GGTGTTAGGGCCTG
129 GGTGTTAGGGCCTA
* * * * * * * **
7665932 GTTAAACTCTTTTCACTCTTTTTTTTATTGTATTGGTGTTAAGGCCTGGTCAAACTCAAGTCTTC
1 GTCAAACTCTTTTTA-TCTCTATTTGATTATATTGGTGTTAGGGCCTGGTCAAACTC-AGTCCAC
** *
7665997 CCCTGTTTGACTATATTGGTGTTAGGACCTGA-TCAAACTCTTTTCATC-CTTTGTTTGACTATA
64 CCCTGTTTGACTATATTGGCATTAGGA-CTGAGTCAAACTCTTTTCATCTC-TTATTTGACTATA
7666060 TTGGTGTTAGGGCCTA
127 TTGGTGTTAGGGCCTA
* * * *
7666076 GTCAAACTCTTTTTATCTCTAGTTTGATTTTATTAGTGTTAGGGCCTAGTGAAACTC
1 GTCAAACTCTTTTTATCTCTA-TTTGATTATATTGGTGTTAGGGCCTGGTCAAACTC
7666133 TCCTCTTTAC
Statistics
Matches: 164, Mismatches: 31, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
143 44 0.27
144 117 0.71
145 3 0.02
ACGTcount: A:0.20, C:0.19, G:0.18, T:0.43
Consensus pattern (142 bp):
GTCAAACTCTTTTTATCTCTATTTGATTATATTGGTGTTAGGGCCTGGTCAAACTCAGTCCACCC
CTGTTTGACTATATTGGCATTAGGACTGAGTCAAACTCTTTTCATCTCTTATTTGACTATATTGG
TGTTAGGGCCTA
Found at i:7666248 original size:44 final size:43
Alignment explanation
Indices: 7666191--7667315 Score: 436
Period size: 44 Copynumber: 25.6 Consensus size: 43
7666181 CTTTCTAATT
*
7666191 TGACGTAT-GTTACCACCCTAGTCAAATCTGCCTCTGTTTTGTC
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCT-TTTTGTC
* * * * * *
7666234 TAATGCATGGTTACCACCCTGGTCAGAT-T-CCT-TTCATTCCGATT
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTT--TT-TG-TC
* * * *
7666278 TTACGTATGGTTACCACTCTGGTGAAATCTGCCTCTCTCTTG-C
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCT-TTTTGTC
* * * *** *
7666321 TTGATGTATGGTTACCACCCTAGTCAGAT-TTTTTCTTTTTGATT
1 -TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTTTTTG-TC
** * * *
7666365 TGATATATAGTTACCACCCTAGTCAAATCTGCCTCTTTCTTATC
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTTT-TTGTC
*
7666409 TGGCGTATGGTTACCACCCTGGTCAAATCTGCCTCTTTCTTGTC
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTTT-TTGTC
* ** * *
7666453 T-AGCGTATGTTTACCACCCTGGTCAAATTCT-TTTCATTTTGATT
1 TGA-CGTATGGTTACCACCCTGGTCAAA-TCTGCCTCTTTTTG-TC
* * * * * *
7666497 TGACATATGGTTACCATCGTAGTCAAATCTGCCTCTCTCTTATC
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCT-TTTTGTC
* * * * * *
7666541 TGATGTATGGTTACCACTCTAGTCAGAT-T--CTTTTTATTCCGGTT
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTTT-TT---GTC
** * * * *
7666585 TGACACATGGTTACCACCTTGGTCAAATCTATCTTCTTCTTGTC
1 TGACGTATGGTTACCACCCTGGTCAAATCT-GCCTCTTTTTGTC
* * * ** * * *
7666629 TGACGTATGGCTACCACCCTAGTCAGATTCT-TTTCATTTCGATT
1 TGACGTATGGTTACCACCCTGGTCA-AATCTGCCTCTTTTTG-TC
* * * **
7666673 TGACGTATGGTTACCACCCTGGTTAAGTCTGCATCCTTCCTGTC
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCT-CTTTTTGTC
* * * ** *
7666717 TGATGTATGGTTACCATCTTGGTCAAAT-T-CCT-TTCATTCCAATT
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTT--TT--TGTC
* * ** *
7666761 TGACGTATGGTTACCACCTTAGTCAAATCTGCCTCTCTCATGTT
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCT-TTTTGTC
* * * * *
7666805 TTATGTATGGTTACCACCCTAGTCAAATCTACCTCCTTTTTGTT
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCT-CTTTTTGTC
* * * * * * *** *** *
7666849 TGGCATATAGTTACCACACCCTCGTCAGATTTTTTTCATTCCAGTT
1 TGACGTATGGTTA-C-CACCCTGGTCAAATCTGCCTC-TTTTTGTC
** * * * *
7666895 TGACGTATGGTTGTCGCCCTAGTCAAGTCTGCCTCTCTTCTGTC
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCT-TTTTGTC
* * * * *
7666939 TGACGTATGGTTACCACCCTAGTCAGAT-T-CTTTTTATTGTGATT
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTT-TT-TG-TC
** * * *
7666983 TGACACATGGTTATCACCCTGGTCAAATTTGCCTTCTTCTTGTC
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCC-TCTTTTTGTC
* * ** * ** *
7667027 TGACGTATGGTTACCACCCTGGTTAGATTCT-TTTCATTCCGATT
1 TGACGTATGGTTACCACCCTGGTCA-AATCTGCCTCTTTTTG-TC
* * ** ** *
7667071 TGATGTATGGTTACTACCCTGGTCAAATCTGTTTCTCTCCTATC
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCT-TTTTGTC
* * * * *** *
7667115 TAACGTATGGTTACCACCCTGGTTAGATTTTTTTCTTTTTGATT
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTTTTTG-TC
*
7667159 TGACGTATGGTTACCACCCTAGTCAAATCTGCCTCTTTCTTGTC
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTTT-TTGTC
* * ** * * *
7667203 T-AGCGTATGGTTACCACCTTGGTCAGATTCT-TTTCATTCTGATT
1 TGA-CGTATGGTTACCACCCTGGTCA-AATCTGCCTCTTTTTG-TC
* * * *
7667247 TGACGTATGGTTACCACCCAGGTAAAATATGCATCTTTCTTGTC
1 TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTTT-TTGTC
*
7667291 TGACGTATGGTTACCACCCTAGTCA
1 TGACGTATGGTTACCACCCTGGTCA
7667316 GATTCTTTTC
Statistics
Matches: 783, Mismatches: 236, Indels: 125
0.68 0.21 0.11
Matches are distributed among these distances:
40 4 0.01
41 7 0.01
42 15 0.02
43 74 0.09
44 592 0.76
45 42 0.05
46 37 0.05
47 7 0.01
48 5 0.01
ACGTcount: A:0.19, C:0.25, G:0.16, T:0.40
Consensus pattern (43 bp):
TGACGTATGGTTACCACCCTGGTCAAATCTGCCTCTTTTTGTC
Found at i:7666469 original size:175 final size:173
Alignment explanation
Indices: 7666151--7666480 Score: 400
Period size: 175 Copynumber: 1.9 Consensus size: 173
7666141 ACTATCTGAC
* * *
7666151 GTATGGTTACCATCCTAGTTAGATTCTTTTCTTTCTAATTTGACGTATGTTACCACCCTAGTCAA
1 GTATGGTTACCACCCTAGTCAGATTCTTTTCTTTCTAATTTGACATATGTTACCACCCTAGTCAA
* * * *
7666216 ATCTGCCTCTGTTTTGTCTAATGCATGGTTACCACCCTGGTCAGATTCCTTTCATTCCGATTTTA
66 ATCTGCCTCTGTTTTATCTAACGCATGGTTACCACCCTGGTCAAATTCCTTTCATT-CGA-TCTA
* *
7666281 CGTATGGTTACCACTCTGGTGAAATCTGCCTCTCTCTTGCTTGAT
129 CGTATGGTTACCACCCTGGTCAAATCTGCCTCTCTCTTGCTTGAT
* * *
7666326 GTATGGTTACCACCCTAGTCAGATT-TTTTCTTTTTGATTTGATATATAGTTACCACCCTAGTCA
1 GTATGGTTACCACCCTAGTCAGATTCTTTTCTTTCTAATTTGACATAT-GTTACCACCCTAGTCA
** *
7666390 AATCTGCCTCT-TTCTTATCTGGCGTATGGTTACCACCCTGGTCAAATCTGCCTCTTTC-TT-G-
65 AATCTGCCTCTGTT-TTATCTAACGCATGGTTACCACCCTGGTCAAAT-T--C-CTTTCATTCGA
*
7666451 TCTAGCGTATGTTTACCACCCTGGTCAAAT
125 TCTA-CGTATGGTTACCACCCTGGTCAAAT
7666481 TCTTTTCATT
Statistics
Matches: 132, Mismatches: 16, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
174 23 0.17
175 99 0.75
176 2 0.02
178 3 0.02
179 5 0.04
ACGTcount: A:0.19, C:0.25, G:0.16, T:0.40
Consensus pattern (173 bp):
GTATGGTTACCACCCTAGTCAGATTCTTTTCTTTCTAATTTGACATATGTTACCACCCTAGTCAA
ATCTGCCTCTGTTTTATCTAACGCATGGTTACCACCCTGGTCAAATTCCTTTCATTCGATCTACG
TATGGTTACCACCCTGGTCAAATCTGCCTCTCTCTTGCTTGAT
Found at i:7666986 original size:222 final size:220
Alignment explanation
Indices: 7666591--7667046 Score: 495
Period size: 222 Copynumber: 2.1 Consensus size: 220
7666581 GGTTTGACAC
* * * * * *
7666591 ATGGTTACCACCTTGGTCAAATCTATCTTCTTCTTGTCTGACGTATGGCTACCACCCTAGTCAGA
1 ATGGTTACCACCCTAGTCAAATCTACCTCCTTCTTGTCTGACATATAGCTACCACCCTAGTCAGA
* * * *
7666656 TTCTTTTCATTTCGATTTGACGTATGGTTACCACCCTGGTTAAGTCTGCATCCTTCCTGTCTGAT
66 TTCTTTTCATTCCGATTTGACGTATGGTTACCACCCTAGTCAAGTCTGCATCCTTCCTGTCTGAC
* * * ** *
7666721 GTATGGTTACCATCTTGGTCAAATTCCTTTCATTCCAATTTGACGTATGGTTACCACCTTAGTCA
131 GTATGGTTACCACCCTAGTCAAATTCCTTTCATTCCAATTTGACACATGGTTACCACCCTAGTCA
* * *
7666786 AATCTGCC-TCTCTCATGTTTTATGT
196 AATCTGCCTTCT-TCATGTCTGACGT
* * * * *
7666811 ATGGTTACCACCCTAGTCAAATCTACCTCCTTTTTGTTTGGCATATAGTTACCACACCCTCGTCA
1 ATGGTTACCACCCTAGTCAAATCTACCTCCTTCTTGTCTGACATATAGCTA-C-CACCCTAGTCA
* ** * *
7666876 GATTTTTTTCATTCC-AGTTTGACGTATGGTTGTCGCCCTAGTCAAGTCTGCCTCTCTT-CTGTC
64 GATTCTTTTCATTCCGA-TTTGACGTATGGTTACCACCCTAGTCAAGTCTGCATC-CTTCCTGTC
* * * *** * *
7666939 TGACGTATGGTTACCACCCTAGTCAGATTCTTTTTATTGTGATTTGACACATGGTTATCACCCTG
127 TGACGTATGGTTACCACCCTAGTCAAATTCCTTTCATTCCAATTTGACACATGGTTACCACCCTA
* *
7667004 GTCAAATTTGCCTTCTTCTTGTCTGACGT
192 GTCAAATCTGCCTTCTTCATGTCTGACGT
7667033 ATGGTTACCACCCT
1 ATGGTTACCACCCT
7667047 GGTTAGATTC
Statistics
Matches: 192, Mismatches: 39, Indels: 8
0.80 0.16 0.03
Matches are distributed among these distances:
220 41 0.21
221 2 0.01
222 143 0.74
223 6 0.03
ACGTcount: A:0.19, C:0.26, G:0.16, T:0.39
Consensus pattern (220 bp):
ATGGTTACCACCCTAGTCAAATCTACCTCCTTCTTGTCTGACATATAGCTACCACCCTAGTCAGA
TTCTTTTCATTCCGATTTGACGTATGGTTACCACCCTAGTCAAGTCTGCATCCTTCCTGTCTGAC
GTATGGTTACCACCCTAGTCAAATTCCTTTCATTCCAATTTGACACATGGTTACCACCCTAGTCA
AATCTGCCTTCTTCATGTCTGACGT
Found at i:7667008 original size:88 final size:89
Alignment explanation
Indices: 7666145--7667328 Score: 741
Period size: 88 Copynumber: 13.4 Consensus size: 89
7666135 CTCTTTACTA
* * * * *
7666145 TCTGACGTATGGTTACCATCCTAGTTAGATTCTTTTCTTTCTAATTTGACGTAT-GTTACCACCC
1 TCTGACGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCTGATTTGACGTATGGTTACCACCC
* *
7666209 TAGTCAAATCTGCCTCTGTT-TTG
66 TGGTCAAATCTGCCTCTCTTCTTG
* * * * * * *
7666232 TCTAATGCATGGTTACCACCCTGGTCAGATTCCTTTCATTCCGATTTTACGTATGGTTACCACTC
1 TCTGACGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCTGATTTGACGTATGGTTACCACCC
*
7666297 TGGTGAAATCTGCCTCTC-TCTTG
66 TGGTCAAATCTGCCTCTCTTCTTG
* * * * ** *
7666320 -CTTGATGTATGGTTACCACCCTAGTCAGATT-TTTTCTTTTTGATTTGATATATAGTTACCACC
1 TC-TGACGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCTGATTTGACGTATGGTTACCACC
* *
7666383 CTAGTCAAATCTGCCTCT-TTCTTA
65 CTGGTCAAATCTGCCTCTCTTCTTG
* * ** * * *
7666407 TCTGGCGTATGGTTACCACCCTGGTCA-AATCTGCCTCTTTCTTG-TCT-AGCGTATGTTTACCA
1 TCTGACGTATGGTTACCACCCTGGTCAGATTCT-TTTCATTC-TGATTTGA-CGTATGGTTACCA
* *
7666469 CCCTGGTCAAAT-T-CTTTTCATT-TTG
63 CCCTGGTCAAATCTGCCTCTC-TTCTTG
* * * * * * ** * * *
7666494 ATTTGACATATGGTTACCATCGTAGTCA-AATCTGCCTC-TCTCTTATCTGATGTATGGTTACCA
1 -TCTGACGTATGGTTACCACCCTGGTCAGATTCT-TTTCAT-TCTGATTTGACGTATGGTTACCA
* * * * * * **
7666557 CTCTAGTCAGAT-T-CTTTTTATTCCGG
63 CCCTGGTCAAATCTGC-CTCTCTTCTTG
* ** * * * *
7666583 TTTGACACATGGTTACCACCTTGGTCA-AATCTATCTTC-TTCTTG-TCTGACGTATGGCTACCA
1 TCTGACGTATGGTTACCACCCTGGTCAGATTCT-T-TTCATTC-TGATTTGACGTATGGTTACCA
* * * * *
7666645 CCCTAGTCAGAT-T-CTTTTCATT-TCG
63 CCCTGGTCAAATCTGCCTCTC-TTCTTG
* * * ** * * *
7666670 ATTTGACGTATGGTTACCACCCTGGTTA-AGTCTGCATCCTTCCTG-TCTGATGTATGGTTACCA
1 -TCTGACGTATGGTTACCACCCTGGTCAGATTCT-TTTCATT-CTGATTTGACGTATGGTTACCA
* * * ***
7666733 TCTTGGTCAAAT-T-CCTTTCATTCCAA
63 CCCTGGTCAAATCTGCCTCTC-TTCTTG
* * * * ** * *
7666759 TTTGACGTATGGTTACCACCTTAGTCA-AATCTGCCTC-TCTCATG-TTTTATGTATGGTTACCA
1 TCTGACGTATGGTTACCACCCTGGTCAGATTCT-TTTCAT-TC-TGATTTGACGTATGGTTACCA
* * *
7666821 CCCTAGTCAAATCTACCTC-CTTTTTG
63 CCCTGGTCAAATCTGCCTCTCTTCTTG
* * * * * * * ** *
7666847 TTTGGCATATAGTTACCACACCCTCGTCAGATTTTTTTCATTC-CAGTTTGACGTATGGTTGTCG
1 TCTGACGTATGGTTA-C-CACCCTGGTCAGATTCTTTTCATTCTGA-TTTGACGTATGGTTACCA
* *
7666911 CCCTAGTCAAGTCTGCCTCTCTTC-TG
63 CCCTGGTCAAATCTGCCTCTCTTCTTG
* * * ** *
7666937 TCTGACGTATGGTTACCACCCTAGTCAGATTCTTTTTATTGTGATTTGACACATGGTTATCACCC
1 TCTGACGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCTGATTTGACGTATGGTTACCACCC
*
7667002 TGGTCAAATTTGCCT-TCTTCTTG
66 TGGTCAAATCTGCCTCTCTTCTTG
* * * *
7667025 TCTGACGTATGGTTACCACCCTGGTTAGATTCTTTTCATTCCGATTTGATGTATGGTTACTACCC
1 TCTGACGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCTGATTTGACGTATGGTTACCACCC
** * *
7667090 TGGTCAAATCTGTTTCTC-TCCTA
66 TGGTCAAATCTGCCTCTCTTCTTG
* * * * *
7667113 TCTAACGTATGGTTACCACCCTGGTTAGATTTTTTTCTTTTTGATTTGACGTATGGTTACCACCC
1 TCTGACGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCTGATTTGACGTATGGTTACCACCC
*
7667178 TAGTCAAATCTGCCTCT-TTCTTG
66 TGGTCAAATCTGCCTCTCTTCTTG
*
7667201 TCT-AGCGTATGGTTACCACCTTGGTCAGATTCTTTTCATTCTGATTTGACGTATGGTTACCACC
1 TCTGA-CGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCTGATTTGACGTATGGTTACCACC
* * * *
7667265 CAGGTAAAATATGCATCT-TTCTTG
65 CTGGTCAAATCTGCCTCTCTTCTTG
*
7667289 TCTGACGTATGGTTACCACCCTAGTCAGATTCTTTTCATT
1 TCTGACGTATGGTTACCACCCTGGTCAGATTCTTTTCATT
7667329 TCGATTTAAC
Statistics
Matches: 875, Mismatches: 181, Indels: 81
0.77 0.16 0.07
Matches are distributed among these distances:
86 5 0.01
87 132 0.15
88 651 0.74
89 21 0.02
90 59 0.07
91 7 0.01
ACGTcount: A:0.19, C:0.24, G:0.16, T:0.40
Consensus pattern (89 bp):
TCTGACGTATGGTTACCACCCTGGTCAGATTCTTTTCATTCTGATTTGACGTATGGTTACCACCC
TGGTCAAATCTGCCTCTCTTCTTG
Found at i:7668049 original size:19 final size:20
Alignment explanation
Indices: 7668012--7668049 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7668002 TCCTGTTGCT
7668012 ATGTATCAATACAATTCATA
1 ATGTATCAATACAATTCATA
*
7668032 ATGTATCGATAC-ATTCAT
1 ATGTATCAATACAATTCAT
7668050 TTGAAATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.37
Consensus pattern (20 bp):
ATGTATCAATACAATTCATA
Found at i:7668122 original size:13 final size:13
Alignment explanation
Indices: 7668104--7668133 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
7668094 ACAATTCTTC
7668104 ATGTATCCATACA
1 ATGTATCCATACA
*
7668117 ATGTATCGATACA
1 ATGTATCCATACA
7668130 ATGT
1 ATGT
7668134 GCCATGTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (13 bp):
ATGTATCCATACA
Found at i:7668202 original size:20 final size:19
Alignment explanation
Indices: 7668179--7668251 Score: 74
Period size: 20 Copynumber: 3.7 Consensus size: 19
7668169 CTGCCAATTT
* * *
7668179 CATGTATCGATATAATTATG
1 CATGTATCGATACAATGA-A
*
7668199 CATGTATTGATACAATGAA
1 CATGTATCGATACAATGAA
* *
7668218 CATGTATCGATACAAAGCA
1 CATGTATCGATACAATGAA
7668237 CAATGTATCGATACA
1 C-ATGTATCGATACA
7668252 TACAAGGGTT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
19 17 0.38
20 28 0.62
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:7668223 original size:19 final size:19
Alignment explanation
Indices: 7668199--7668251 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
7668189 TATAATTATG
* *
7668199 CATGTATTGATACAATGAA
1 CATGTATCGATACAAAGAA
*
7668218 CATGTATCGATACAAAGCA
1 CATGTATCGATACAAAGAA
7668237 CAATGTATCGATACA
1 C-ATGTATCGATACA
7668252 TACAAGGGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 17 0.57
20 13 0.43
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.26
Consensus pattern (19 bp):
CATGTATCGATACAAAGAA
Found at i:7668855 original size:22 final size:23
Alignment explanation
Indices: 7668830--7668881 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
7668820 TCTCTTAAAA
7668830 AAAAATTTCT-CCCATTTTTGTT
1 AAAAATTTCTGCCCATTTTTGTT
* **
7668852 AAAAAATTCTGCCTTTTTTTGTT
1 AAAAATTTCTGCCCATTTTTGTT
7668875 AAAAATT
1 AAAAATT
7668882 ATTTCATCCC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
22 9 0.36
23 16 0.64
ACGTcount: A:0.33, C:0.13, G:0.06, T:0.48
Consensus pattern (23 bp):
AAAAATTTCTGCCCATTTTTGTT
Found at i:7675227 original size:12 final size:12
Alignment explanation
Indices: 7675210--7675241 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
7675200 CGAGTCAACT
7675210 TCATCATTATCA
1 TCATCATTATCA
*
7675222 TCATCATTATCT
1 TCATCATTATCA
7675234 TCATCATT
1 TCATCATT
7675242 TTTGATGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (12 bp):
TCATCATTATCA
Found at i:7676860 original size:13 final size:13
Alignment explanation
Indices: 7676842--7676871 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
7676832 ACAATTCTTC
7676842 ATGTATCGATAAA
1 ATGTATCGATAAA
*
7676855 ATGTATCGATACA
1 ATGTATCGATAAA
7676868 ATGT
1 ATGT
7676872 GCCATGTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (13 bp):
ATGTATCGATAAA
Found at i:7676863 original size:33 final size:33
Alignment explanation
Indices: 7676821--7676885 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
7676811 CGTTTGGGAC
7676821 AATGTATCGATACAAT-T-CTTCATGTATCGATAA
1 AATGTATCGATACAATGTGC--CATGTATCGATAA
7676854 AATGTATCGATACAATGTGCCATGTATCGATA
1 AATGTATCGATACAATGTGCCATGTATCGATA
7676886 CAAACAGTGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
33 28 0.93
34 1 0.03
35 1 0.03
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34
Consensus pattern (33 bp):
AATGTATCGATACAATGTGCCATGTATCGATAA
Found at i:7676942 original size:20 final size:20
Alignment explanation
Indices: 7676917--7676971 Score: 76
Period size: 19 Copynumber: 2.8 Consensus size: 20
7676907 CTGCCAGTTT
**
7676917 CATGTATCGATATAATTGTG
1 CATGTATCGATATAATTGAA
*
7676937 CATGTATCGATA-AAATGAA
1 CATGTATCGATATAATTGAA
7676956 CATGTATCGATATAAT
1 CATGTATCGATATAAT
7676972 GTATCGATAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (20 bp):
CATGTATCGATATAATTGAA
Found at i:7677449 original size:88 final size:87
Alignment explanation
Indices: 7677293--7677907 Score: 390
Period size: 88 Copynumber: 7.2 Consensus size: 87
7677283 TCCTAACAAC
** * * * * * * **
7677293 ATGGTTACCACCCTAGTCAAATCTGCCTTCTTCTTGTCTAACGTATGGTTACTACCCTCATCAGA
1 ATGGTTACCACCCTAGTC-AATCTGTATCCTTCTTGTTTGATGTATGATTACCACCCTGGTCAGA
*
7677358 TTCTTTTTATTTTGATTTGACGT
65 TTCTTTTCATTTTGATTTGACGT
* * * * * *
7677381 ATGGTTATCACCTTGGTCAAGTCTGTATCCTTCTTGTTTGACGCATGATTACCACCCTGGTCAAA
1 ATGGTTACCACCCTAGTCAA-TCTGTATCCTTCTTGTTTGATGTATGATTACCACCCTGGTCAGA
* *
7677446 TTCTTTTCATTTCGATTTGATGT
65 TTCTTTTCATTTTGATTTGACGT
*
7677469 ATGGTTACCACCCTAGTCAA-ATGTA-CCTTTCTCT-TATCTGATGTATGATTACCACCCTGGTC
1 ATGGTTACCACCCTAGTCAATCTGTATCC-TTCT-TGT-T-TGATGTATGATTACCACCCTGGTC
* * **
7677531 AGATTCTTTTCATTCTGGTTTGACAC
62 AGATTCTTTTCATTTTGATTTGACGT
*** * * *
7677557 ATGGTTACCACCCTAGTCAAATCTACCTTCTTCTTGTCTGATGTATGGTTACCACCCTGGTCAGA
1 ATGGTTACCACCCTAGTC-AATCTGTATCCTTCTTGTTTGATGTATGATTACCACCCTGGTCAGA
*
7677622 TTTTTTTC-TTTTCGATTTGACGT
65 TTCTTTTCATTTT-GATTTGACGT
* * * * *
7677645 ATGGTTA-C-CTCT-G-C---C--T-T-CTTATTGTTT-AGCGTATGGTTACCACTCTGGTCAGA
1 ATGGTTACCACCCTAGTCAATCTGTATCCTTCTTGTTTGA-TGTATGATTACCACCCTGGTCAGA
* *
7677698 TTCTTTTCATTCTGATTTGACAT
65 TTCTTTTCATTTTGATTTGACGT
* * * * * ** * * *
7677721 ATGGTTACCACTCTGGTCAAATCTG--TCTTTCTCCTATCTGACATATGGTTATCACCCTAGTCA
1 ATGGTTACCACCCTAGTC-AATCTGTATCCTTCT--TGTTTGATGTATGATTACCACCCTGGTCA
* *
7677784 GATTCTTTTCAGTTTGATTTGACAT
63 GATTCTTTTCATTTTGATTTGACGT
* *** ** * ** * * *
7677809 ATGGTTACCACCCTGGTCAAATCTACCTTTTTCTTGTCTGGCGTATGGTTATCACCCTGGTCAAA
1 ATGGTTACCACCCTAGTC-AATCTGTATCCTTCTTGTTTGATGTATGATTACCACCCTGGTCAGA
* *
7677874 TTCTTTT--TTTT-ATTTAATGT
65 TTCTTTTCATTTTGATTTGACGT
7677894 ATGGTTACCACCCT
1 ATGGTTACCACCCT
7677908 CATCAGGCCT
Statistics
Matches: 426, Mismatches: 73, Indels: 59
0.76 0.13 0.11
Matches are distributed among these distances:
75 1 0.00
76 53 0.12
77 5 0.01
78 4 0.01
79 1 0.00
80 2 0.00
84 2 0.00
85 24 0.06
86 18 0.04
87 8 0.02
88 291 0.68
89 4 0.01
90 12 0.03
91 1 0.00
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.42
Consensus pattern (87 bp):
ATGGTTACCACCCTAGTCAATCTGTATCCTTCTTGTTTGATGTATGATTACCACCCTGGTCAGAT
TCTTTTCATTTTGATTTGACGT
Found at i:7677465 original size:44 final size:43
Alignment explanation
Indices: 7677333--7677907 Score: 284
Period size: 44 Copynumber: 13.4 Consensus size: 43
7677323 TTCTTGTCTA
* ** * * *
7677333 ACGTATGGTTACTACCCTCATCAGATTCTTTTTATTTTGATTTG
1 ACGTATGGTTACCACCCTGGTCAAATTC-TTTTCTTTCGATTTG
* * * * *
7677377 ACGTATGGTTATCACCTTGGTC-AAGTCTGTATCCTTCTTG-TTTG
1 ACGTATGGTTACCACCCTGGTCAAATTCT-T-TTCTT-TCGATTTG
* *
7677421 ACGCATGATTACCACCCTGGTCAAATTCTTTTCATTTCGATTTG
1 ACGTATGGTTACCACCCTGGTCAAATTCTTTTC-TTTCGATTTG
* * * *
7677465 ATGTATGGTTACCACCCTAGTCAAATGTACCTTTCTCTT--ATCTG
1 ACGTATGGTTACCACCCTGGTCAAAT-T-CTTTTCT-TTCGATTTG
* * * * *
7677509 ATGTATGATTACCACCCTGGTCAGATTCTTTTCATTCTGGTTTG
1 ACGTATGGTTACCACCCTGGTCAAATTCTTTTCTTTC-GATTTG
** * *
7677553 ACACATGGTTACCACCCTAGTCAAATCTACCTTCTTC-TT-G-TCTG
1 ACGTATGGTTACCACCCTGGTCAAAT-T--CTT-TTCTTTCGATTTG
* * *
7677597 ATGTATGGTTACCACCCTGGTCAGATTTTTTTCTTTTCGATTTG
1 ACGTATGGTTACCACCCTGGTCAAATTCTTTTC-TTTCGATTTG
* * *
7677641 ACGTATGGTTA-C-CTCT-G-C--CTTC--TT-ATT-G-TTT-
1 ACGTATGGTTACCACCCTGGTCAAATTCTTTTCTTTCGATTTG
* * *
7677672 AGCGTATGGTTACCACTCTGGTCAGATTCTTTTCATTCTGATTTG
1 A-CGTATGGTTACCACCCTGGTCAAATTCTTTTCTTTC-GATTTG
* * * * * *
7677717 ACATATGGTTACCACTCTGGTCAAATCTGTCTTTC-TCCTATCTG
1 ACGTATGGTTACCACCCTGGTCAAAT-TCT-TTTCTTTCGATTTG
* * * *
7677761 ACATATGGTTATCACCCTAGTCAGATTCTTTTCAGTTT-GATTTG
1 ACGTATGGTTACCACCCTGGTCAAATTCTTTTC--TTTCGATTTG
* *
7677805 ACATATGGTTACCACCCTGGTCAAATCTACCTTTT-TCTT-G-TCTG
1 ACGTATGGTTACCACCCTGGTCAAAT-T--CTTTTCT-TTCGATTTG
* * * *
7677849 GCGTATGGTTATCACCCTGGTCAAATTCTTTT-TTT-TATTTA
1 ACGTATGGTTACCACCCTGGTCAAATTCTTTTCTTTCGATTTG
*
7677890 ATGTATGGTTACCACCCT
1 ACGTATGGTTACCACCCT
7677908 CATCAGGCCT
Statistics
Matches: 411, Mismatches: 76, Indels: 91
0.71 0.13 0.16
Matches are distributed among these distances:
31 1 0.00
32 13 0.03
33 2 0.00
34 6 0.01
35 1 0.00
36 3 0.01
38 5 0.01
40 8 0.02
41 31 0.08
42 15 0.04
43 16 0.04
44 264 0.64
45 22 0.05
46 11 0.03
47 10 0.02
48 3 0.01
ACGTcount: A:0.20, C:0.23, G:0.16, T:0.42
Consensus pattern (43 bp):
ACGTATGGTTACCACCCTGGTCAAATTCTTTTCTTTCGATTTG
Found at i:7677805 original size:164 final size:164
Alignment explanation
Indices: 7677511--7677817 Score: 429
Period size: 164 Copynumber: 1.9 Consensus size: 164
7677501 CTTATCTGAT
*
7677511 GTATGATTACCACCCTGGTCAGATTCTTTTCATTCTGGTTTGACACATGGTTACCACCCTAGTCA
1 GTATGATTACCACCCTGGTCAGATTCTTTTCATTCTGATTTGACACATGGTTACCACCCTAGTCA
* * ** * * *
7677576 AATCTACCTTCTTCTTGTCTGATGTATGGTTACCACCCTGGTCAGATTTTTTTCTTTTCGATTTG
66 AATCTACCTTCTTCCTATCTGACATATGGTTACCACCCTAGTCAGATTCTTTTCGTTTCGATTTG
*
7677641 ACGTATGGTTACCTCTGCCTTCTTATTGTTTAGC
131 ACATATGGTTACCTCTGCCTTCTTATTGTTTAGC
* * * * *
7677675 GTATGGTTACCACTCTGGTCAGATTCTTTTCATTCTGATTTGACATATGGTTACCACTCTGGTCA
1 GTATGATTACCACCCTGGTCAGATTCTTTTCATTCTGATTTGACACATGGTTACCACCCTAGTCA
** *
7677740 AATCTGTCTT-TCTCCTATCTGACATATGGTTATCACCCTAGTCAGATTCTTTTCAGTTT-GATT
66 AATCTACCTTCT-TCCTATCTGACATATGGTTACCACCCTAGTCAGATTCTTTTC-GTTTCGATT
7677803 TGACATATGGTTACC
129 TGACATATGGTTACC
7677818 ACCCTGGTCA
Statistics
Matches: 124, Mismatches: 17, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
163 1 0.01
164 120 0.97
165 3 0.02
ACGTcount: A:0.19, C:0.23, G:0.16, T:0.42
Consensus pattern (164 bp):
GTATGATTACCACCCTGGTCAGATTCTTTTCATTCTGATTTGACACATGGTTACCACCCTAGTCA
AATCTACCTTCTTCCTATCTGACATATGGTTACCACCCTAGTCAGATTCTTTTCGTTTCGATTTG
ACATATGGTTACCTCTGCCTTCTTATTGTTTAGC
Found at i:7677939 original size:85 final size:86
Alignment explanation
Indices: 7677674--7678003 Score: 227
Period size: 88 Copynumber: 3.8 Consensus size: 86
7677664 TATTGTTTAG
* * * * * * **
7677674 CGTATGGTTACCACTCTGGTCAGATTCTTTTCATTCTGATTTGACATATGGTTACCACTCTGGTC
1 CGTATGGTTATCACCCTAGTCAAATTCTTTT-ATT-TGATTTAACATATGGTTACCACCCTCATC
* * * * * *
7677739 AAATCTGTC-TTTCTCCTATCTGA
64 AAACCT-ACATTTTTCTTGTCTAA
* * * **
7677762 CATATGGTTATCACCCTAGTCAGATTCTTTTCAGTTTGATTTGACATATGGTTACCACCCTGGTC
1 CGTATGGTTATCACCCTAGTCAAATTCTTTT-A-TTTGATTTAACATATGGTTACCACCCTCATC
* * **
7677827 AAATCTACCTTTTTCTTGTCTGG
64 AAACCTACATTTTTCTTGTCTAA
* * ** *
7677850 CGTATGGTTATCACCCTGGTCAAATTCTTTT-TTTTATTTAATGTATGGTTACCACCCTCATCAG
1 CGTATGGTTATCACCCTAGTCAAATTCTTTTATTTGATTTAACATATGGTTACCACCCTCATCAA
*
7677914 GCCTACATCTTTTC-TGTCTAA
66 ACCTACAT-TTTTCTTGTCTAA
* * * * * * **
7677935 CGTATGGTTACCACCCTAGTTAGATTTTTTTCATTTCAATTTGACATATGGTTACC-CCCTGGTC
1 CGTATGGTTATCACCCTAGTCAAATTCTTTT-ATTT-GATTTAACATATGGTTACCACCCTCATC
7677999 AAACC
64 AAACC
7678004 ACCTACCCCT
Statistics
Matches: 198, Mismatches: 38, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
85 62 0.31
86 5 0.03
87 13 0.07
88 116 0.59
89 2 0.01
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.41
Consensus pattern (86 bp):
CGTATGGTTATCACCCTAGTCAAATTCTTTTATTTGATTTAACATATGGTTACCACCCTCATCAA
ACCTACATTTTTCTTGTCTAA
Found at i:7678012 original size:20 final size:20
Alignment explanation
Indices: 7677987--7678027 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
7677977 GACATATGGT
7677987 TACCCCCTGGTCAAACCACC
1 TACCCCCTGGTCAAACCACC
*
7678007 TACCCCTTGGTCAAACCACC
1 TACCCCCTGGTCAAACCACC
7678027 T
1 T
7678028 CCCTCCTGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.24, C:0.46, G:0.10, T:0.20
Consensus pattern (20 bp):
TACCCCCTGGTCAAACCACC
Found at i:7680294 original size:20 final size:20
Alignment explanation
Indices: 7680269--7680334 Score: 69
Period size: 20 Copynumber: 3.3 Consensus size: 20
7680259 AGATGTATTG
*
7680269 ATACATTTTTCAATATATCA
1 ATACATTTTTCAATGTATCA
* * * *
7680289 ATACATGTATGAATGTATTA
1 ATACATTTTTCAATGTATCA
* *
7680309 ATACATTTTTTAATGTATCG
1 ATACATTTTTCAATGTATCA
7680329 ATACAT
1 ATACAT
7680335 CTAGTTAATT
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.38, C:0.11, G:0.08, T:0.44
Consensus pattern (20 bp):
ATACATTTTTCAATGTATCA
Found at i:7681264 original size:20 final size:20
Alignment explanation
Indices: 7681227--7681265 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
7681217 TAGCCTTTGA
* *
7681227 TCATGCATTTTCACTATGTT
1 TCATACATTTTCAATATGTT
*
7681247 TCATACATTTTTAATATGT
1 TCATACATTTTCAATATGT
7681266 CTGGCATCTC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.15, G:0.08, T:0.51
Consensus pattern (20 bp):
TCATACATTTTCAATATGTT
Found at i:7694185 original size:20 final size:20
Alignment explanation
Indices: 7694160--7694206 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
7694150 GCGTCATTCT
7694160 CAAAAAGCAAAACAAA-AAAA
1 CAAAAAGCAAAA-AAATAAAA
* *
7694180 CAAAAACCAAAAAAATAATA
1 CAAAAAGCAAAAAAATAAAA
7694200 CAAAAAG
1 CAAAAAG
7694207 GAAGGGGTCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 3 0.13
20 20 0.87
ACGTcount: A:0.77, C:0.15, G:0.04, T:0.04
Consensus pattern (20 bp):
CAAAAAGCAAAAAAATAAAA
Found at i:7695629 original size:58 final size:57
Alignment explanation
Indices: 7695501--7696283 Score: 782
Period size: 58 Copynumber: 13.7 Consensus size: 57
7695491 AATGCGACAT
** * * * *
7695501 CTTTTCAAAGCCCACAAACCAGTGGCA-CATTCTCAAAACCCATAAGTCAGTGGCA-C
1 CTTTTCAAAGCCCACAAGTCAGTGGCATCCTT-TTAAAGCCCACAAGTCAGTGGCACC
* * * * **
7695557 CTTTTCAAAGCCCACAAGTTAATGGCATCCTTTTAAAGCCCACGAGTTAGTGGCATTT
1 CTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTTAAAGCCCACAAGTCAGTGGCA-CC
* * * * * *
7695615 CTTTTCAAAGCCCACAAGTCAGTGGCATTCTTTCAAAGCCCACGAGTCAATGACGTCC
1 CTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTTAAAGCCCACAAGTCAGTGGC-ACC
* * * * *
7695673 CTTTTCAAAGCCTACAAGTCAGTGGCATCCTTTCAAAGCCCACGAGTCAATGGCATCT
1 CTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTTAAAGCCCACAAGTCAGTGGCA-CC
* * * *
7695731 CTTTTCAAAGCCCACGAGTCAGTGACGTCCCTTTTCAAAGCCCACAAGTCAGTGGCATC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAT-CCTTTT-AAAGCCCACAAGTCAGTGGCACC
* ** *
7695790 C-TTTCAAAGCCCACGAGTCAGTGGCATCCCTTTTCAAAGCCCATGAGTTAGTGGCATCC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAT-CCTTTT-AAAGCCCACAAGTCAGTGGCA-CC
* *
7695849 CTTTTCAAAGCCCACAAGTCAGTGGCAT-CTTTTCAAAGCCCATAAGTCAATGGCATCC
1 CTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTT-AAAGCCCACAAGTCAGTGGCA-CC
* * *
7695907 CTTTTCAAAGCCCACAAGTTAGTGGCA-CATTTTCAAAGCCCACAAGTCAGTGGCTCC
1 CTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTT-AAAGCCCACAAGTCAGTGGCACC
* * *
7695964 C-TTTCAAAGCTCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGC-CC
1 CTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTTAAAGCCCACAAGTCAGTGGCACC
*
7696019 C-TTTCAAAGCCCACAAGTCAGTGGCATCCTTTTTCAAAGCCAACAAGTCAGTGGCATCC
1 CTTTTCAAAGCCCACAAGTCAGTGGCATCC-TTTT-AAAGCCCACAAGTCAGTGGCA-CC
* * * *
7696078 CTTTTCAAAGCCCACAAGTCAATGGCA-ACTTTCAAAGCCCACAAGTTAGTGGCA-C
1 CTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTTAAAGCCCACAAGTCAGTGGCACC
* * * * * * *
7696133 TTTTTCAAAGCTCACAAGTCAGTGACATCCTTTCAGAGCCCACGAGTCAGTGGCATC
1 CTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTTAAAGCCCACAAGTCAGTGGCACC
* * * ** * * *
7696190 C-TTTCAGAGCCCACGAGTTAGTGGC-TTTTTTTGAAAGCTCACAAGTTAGTGGCA-T
1 CTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTT-AAAGCCCACAAGTCAGTGGCACC
* *
7696245 CTTTTCAAAGCCCACAAGTCAGTGACATCCTTTCAAAGC
1 CTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTTAAAGC
7696284 ATACAAAAAT
Statistics
Matches: 614, Mismatches: 92, Indels: 42
0.82 0.12 0.06
Matches are distributed among these distances:
55 58 0.09
56 171 0.28
57 53 0.09
58 252 0.41
59 12 0.02
60 68 0.11
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (57 bp):
CTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTTAAAGCCCACAAGTCAGTGGCACC
Found at i:7695743 original size:88 final size:86
Alignment explanation
Indices: 7695501--7696268 Score: 791
Period size: 88 Copynumber: 8.9 Consensus size: 86
7695491 AATGCGACAT
** * * *
7695501 CTTTTCAAAGCCCACAAACCAGTGGCA-CATTCTCAAAACCCATAAGTCAGTGGCA-CCTTTTCA
1 CTTTTCAAAGCCCACAAGTCAGTGGCATCCTT-TCAAAGCCCACAAGTCAGTGGCATCCTTTTCA
* * *
7695564 AAGCCCACAAGTTAATGGCAT-C
65 AAGCCCACAAGTCAGT-GCGTCC
* * * *
7695586 CTTTT-AAAGCCCACGAGTTAGTGGCATTTCTTTTCAAAGCCCACAAGTCAGTGGCATTC-TTTC
1 CTTTTCAAAGCCCACAAGTCAGTGGCA--TCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTTC
* *
7695649 AAAGCCCACGAGTCAATGACGTCC
64 AAAGCCCACAAGTCAGTG-CGTCC
* * *
7695673 CTTTTCAAAGCCTACAAGTCAGTGGCATCCTTTCAAAGCCCACGAGTCAATGGCATCTCTTTTCA
1 CTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATC-CTTTTCA
*
7695738 AAGCCCACGAGTCAGTGACGTCC
65 AAGCCCACAAGTCAGTG-CGTCC
*
7695761 CTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACGAGTCAGTGGCATCCCTTTTCA
1 CTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCAT-CCTTTTCA
** * *
7695826 AAGCCCATGAGTTAGTGGCATCC
65 AAGCCCACAAGTCAGT-GCGTCC
* * *
7695849 CTTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCATAAGTCAATGGCATCCCTTTTCA
1 CTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCAT-CCTTTTCA
*
7695914 AAGCCCACAAGTTAGTG-G-CAC
65 AAGCCCACAAGTCAGTGCGTC-C
* * *
7695935 ATTTTCAAAGCCCACAAGTCAGTGGC-TCCCTTTCAAAGCTCACAAGTCAGTGGCA-CCCTTTCA
1 CTTTTCAAAGCCCACAAGTCAGTGGCAT-CCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTTCA
7695998 AAGCCCACAAGTCAGTG-G-CC
65 AAGCCCACAAGTCAGTGCGTCC
* *
7696018 CCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTTTCAAAGCCAACAAGTCAGTGGCATCCCTTTT
1 CTTTTCAAAGCCCACAAGTCAGTGGCATCC--TTTCAAAGCCCACAAGTCAGTGGCAT-CCTTTT
* *
7696083 CAAAGCCCACAAGTCAATG-G-CAA
63 CAAAGCCCACAAGTCAGTGCGTC-C
* * * *
7696106 C-TTTCAAAGCCCACAAGTTAGTGGCA-CTTTTTCAAAGCTCACAAGTCAGTGACATCC-TTTCA
1 CTTTTCAAAGCCCACAAGTCAGTGGCATC-CTTTCAAAGCCCACAAGTCAGTGGCATCCTTTTCA
* * *
7696168 GAGCCCACGAGTCAGTGGCAT-C
65 AAGCCCACAAGTCAGT-GCGTCC
* * * * ** * * *
7696190 C-TTTCAGAGCCCACGAGTTAGTGGCTTTTTTTGAAAGCTCACAAGTTAGTGGCAT-CTTTTCAA
1 CTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTTCAA
7696253 AGCCCACAAGTCAGTG
66 AGCCCACAAGTCAGTG
7696269 ACATCCTTTC
Statistics
Matches: 594, Mismatches: 64, Indels: 52
0.84 0.09 0.07
Matches are distributed among these distances:
83 47 0.08
84 112 0.19
85 54 0.09
86 118 0.20
87 61 0.10
88 200 0.34
89 2 0.00
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (86 bp):
CTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTTCAA
AGCCCACAAGTCAGTGCGTCC
Found at i:7696289 original size:28 final size:28
Alignment explanation
Indices: 7695498--7696283 Score: 821
Period size: 28 Copynumber: 27.5 Consensus size: 28
7695488 GTCAATGCGA
* **
7695498 CATCTTTTCAAAGCCCACAAACCAGTGG
1 CATCCTTTCAAAGCCCACAAGTCAGTGG
* * *
7695526 CA-CATTCTCAAAACCCATAAGTCAGTGG
1 CATCCTT-TCAAAGCCCACAAGTCAGTGG
* *
7695554 CA-CCTTTTCAAAGCCCACAAGTTAATGG
1 CATCC-TTTCAAAGCCCACAAGTCAGTGG
* * *
7695582 CATCCTTTTAAAGCCCACGAGTTAGTGG
1 CATCCTTTCAAAGCCCACAAGTCAGTGG
*
7695610 CATTTCTTTTCAAAGCCCACAAGTCAGTGG
1 CA--TCCTTTCAAAGCCCACAAGTCAGTGG
* * * *
7695640 CATTCTTTCAAAGCCCACGAGTCAATGA
1 CATCCTTTCAAAGCCCACAAGTCAGTGG
* *
7695668 CGTCCCTTTTCAAAGCCTACAAGTCAGTGG
1 CAT-CC-TTTCAAAGCCCACAAGTCAGTGG
* *
7695698 CATCCTTTCAAAGCCCACGAGTCAATGG
1 CATCCTTTCAAAGCCCACAAGTCAGTGG
* *
7695726 CATCTCTTTTCAAAGCCCACGAGTCAGTGA
1 CATC-C-TTTCAAAGCCCACAAGTCAGTGG
*
7695756 CGTCCCTTTTCAAAGCCCACAAGTCAGTGG
1 CAT-CC-TTTCAAAGCCCACAAGTCAGTGG
*
7695786 CATCCTTTCAAAGCCCACGAGTCAGTGG
1 CATCCTTTCAAAGCCCACAAGTCAGTGG
** *
7695814 CATCCCTTTTCAAAGCCCATGAGTTAGTGG
1 CAT-CC-TTTCAAAGCCCACAAGTCAGTGG
7695844 CATCCCTTTTCAAAGCCCACAAGTCAGTGG
1 CAT-CC-TTTCAAAGCCCACAAGTCAGTGG
* * *
7695874 CATCTTTTCAAAGCCCATAAGTCAATGG
1 CATCCTTTCAAAGCCCACAAGTCAGTGG
*
7695902 CATCCCTTTTCAAAGCCCACAAGTTAGTGG
1 CAT-CC-TTTCAAAGCCCACAAGTCAGTGG
*
7695932 CA-CATTTTCAAAGCCCACAAGTCAGTGG
1 CATC-CTTTCAAAGCCCACAAGTCAGTGG
*
7695960 C-TCCCTTTCAAAGCTCACAAGTCAGTGG
1 CAT-CCTTTCAAAGCCCACAAGTCAGTGG
*
7695988 CACCCTTTCAAAGCCCACAAGTCAGTGG
1 CATCCTTTCAAAGCCCACAAGTCAGTGG
*
7696016 C-CCCTTTCAAAGCCCACAAGTCAGTGG
1 CATCCTTTCAAAGCCCACAAGTCAGTGG
*
7696043 CATCCTTTTTCAAAGCCAACAAGTCAGTGG
1 CATCC--TTTCAAAGCCCACAAGTCAGTGG
*
7696073 CATCCCTTTTCAAAGCCCACAAGTCAATGG
1 CAT-CC-TTTCAAAGCCCACAAGTCAGTGG
* *
7696103 CA-ACTTTCAAAGCCCACAAGTTAGTGG
1 CATCCTTTCAAAGCCCACAAGTCAGTGG
* * *
7696130 CA-CTTTTTCAAAGCTCACAAGTCAGTGA
1 CATC-CTTTCAAAGCCCACAAGTCAGTGG
* *
7696158 CATCCTTTCAGAGCCCACGAGTCAGTGG
1 CATCCTTTCAAAGCCCACAAGTCAGTGG
* * *
7696186 CATCCTTTCAGAGCCCACGAGTTAGTGG
1 CATCCTTTCAAAGCCCACAAGTCAGTGG
* ** * * *
7696214 CTTTTTTTGAAAGCTCACAAGTTAGTGG
1 CATCCTTTCAAAGCCCACAAGTCAGTGG
* *
7696242 CATCTTTTCAAAGCCCACAAGTCAGTGA
1 CATCCTTTCAAAGCCCACAAGTCAGTGG
7696270 CATCCTTTCAAAGC
1 CATCCTTTCAAAGC
7696284 ATACAAAAAT
Statistics
Matches: 645, Mismatches: 89, Indels: 48
0.82 0.11 0.06
Matches are distributed among these distances:
27 53 0.08
28 358 0.56
29 16 0.02
30 215 0.33
31 3 0.00
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (28 bp):
CATCCTTTCAAAGCCCACAAGTCAGTGG
Found at i:7698006 original size:20 final size:20
Alignment explanation
Indices: 7697969--7698007 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
7697959 TAGCCTTTGA
*
7697969 TCATGCATTTTCACTATGTT
1 TCATGCATTTTCAATATGTT
* *
7697989 TCATTCATTTTTAATATGT
1 TCATGCATTTTCAATATGT
7698008 CTGACATCTC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.23, C:0.15, G:0.08, T:0.54
Consensus pattern (20 bp):
TCATGCATTTTCAATATGTT
Found at i:7699275 original size:49 final size:50
Alignment explanation
Indices: 7699208--7699320 Score: 185
Period size: 49 Copynumber: 2.3 Consensus size: 50
7699198 TTCTTCCGAG
*
7699208 GGGATACTCCAACCCTCAAATATCTTT-TTTCTCAAATTATCATTTGTTA
1 GGGACACTCCAACCCTCAAATATCTTTGTTTCTCAAATTATCATTTGTTA
* *
7699257 GGGACACTCTAACCCTCAAATATCTTTGTTTCTCAAATTATCATTTGTTG
1 GGGACACTCCAACCCTCAAATATCTTTGTTTCTCAAATTATCATTTGTTA
7699307 GGGACA-TCCAACCC
1 GGGACACTCCAACCC
7699321 CATTCCTCCT
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
49 32 0.54
50 27 0.46
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.36
Consensus pattern (50 bp):
GGGACACTCCAACCCTCAAATATCTTTGTTTCTCAAATTATCATTTGTTA
Found at i:7699293 original size:17 final size:19
Alignment explanation
Indices: 7699271--7699305 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
7699261 CACTCTAACC
7699271 CTCAAA-TATC-TTTGTTT
1 CTCAAATTATCATTTGTTT
7699288 CTCAAATTATCATTTGTT
1 CTCAAATTATCATTTGTT
7699306 GGGGACATCC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 4 0.25
19 6 0.38
ACGTcount: A:0.26, C:0.17, G:0.06, T:0.51
Consensus pattern (19 bp):
CTCAAATTATCATTTGTTT
Found at i:7699612 original size:20 final size:19
Alignment explanation
Indices: 7699587--7699665 Score: 104
Period size: 20 Copynumber: 4.0 Consensus size: 19
7699577 GTTACAAGCA
*
7699587 ATGTATCAATACAATTCATC
1 ATGTATCGATACAATT-ATC
*
7699607 ATGTATCGATAAAATTATCC
1 ATGTATCGATACAATTAT-C
*
7699627 ATGTATCGATACAATGATC
1 ATGTATCGATACAATTATC
7699646 ATGTATCGATACAATGTATC
1 ATGTATCGATACAAT-TATC
7699666 GATACAAAGC
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
19 18 0.35
20 34 0.65
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.34
Consensus pattern (19 bp):
ATGTATCGATACAATTATC
Found at i:7699664 original size:13 final size:13
Alignment explanation
Indices: 7699646--7699672 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7699636 TACAATGATC
7699646 ATGTATCGATACA
1 ATGTATCGATACA
7699659 ATGTATCGATACA
1 ATGTATCGATACA
7699672 A
1 A
7699673 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:7699688 original size:33 final size:32
Alignment explanation
Indices: 7699627--7699691 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
7699617 AAAATTATCC
* *
7699627 ATGTATCGATACAATGATCATGTATCGATACA
1 ATGTATCGATACAAAGATAATGTATCGATACA
7699659 ATGTATCGATACAAAGCATAATGTATCGATACA
1 ATGTATCGATACAAAG-ATAATGTATCGATACA
7699692 TCTAGGTGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 15 0.50
33 15 0.50
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.29
Consensus pattern (32 bp):
ATGTATCGATACAAAGATAATGTATCGATACA
Found at i:7706028 original size:144 final size:144
Alignment explanation
Indices: 7705767--7706030 Score: 440
Period size: 144 Copynumber: 1.8 Consensus size: 144
7705757 TAATACCTTT
* *
7705767 GATCCTTTTGGAATCCATTTTATTATTTCATCGTTGAAAGTTCTGATTCCTTTAGGCACCCACAT
1 GATCCTTTTGGAATCCACTTTATTATTTCATCATTGAAAGTTCTGATTCCTTTAGGCACCCACAT
*
7705832 TTTTTTAATAACTTTGCCTCTAAATTTATTTATTTTAGAATTACATGAGTGAAATGTGTGACCAT
66 TTTCTTAATAACTTTGCCTCTAAATTTATTTATTTTAGAATTACATGAGTGAAATGTGTGACCAT
7705897 GTTTATGGCATGTG
131 GTTTATGGCATGTG
* *
7705911 GATCCTTTTGGAATCCACTTTATTATTTCATCATTGGAAGTT-TCGATTCCTTTAGGCACCCATA
1 GATCCTTTTGGAATCCACTTTATTATTTCATCATTGAAAGTTCT-GATTCCTTTAGGCACCCACA
* **
7705975 TTTTCTTAGTAACTTTGCCTCTAAATTTATTTATTTTAGAATTACATTTGTGAAAT
65 TTTTCTTAATAACTTTGCCTCTAAATTTATTTATTTTAGAATTACATGAGTGAAAT
7706031 ATGCTTAACA
Statistics
Matches: 111, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
143 1 0.01
144 110 0.99
ACGTcount: A:0.26, C:0.16, G:0.14, T:0.45
Consensus pattern (144 bp):
GATCCTTTTGGAATCCACTTTATTATTTCATCATTGAAAGTTCTGATTCCTTTAGGCACCCACAT
TTTCTTAATAACTTTGCCTCTAAATTTATTTATTTTAGAATTACATGAGTGAAATGTGTGACCAT
GTTTATGGCATGTG
Found at i:7707878 original size:20 final size:19
Alignment explanation
Indices: 7707853--7707993 Score: 104
Period size: 20 Copynumber: 7.0 Consensus size: 19
7707843 GTTACAAGCA
7707853 ATGTATCGATACAATTCATC
1 ATGTATCGATACAATT-ATC
*
7707873 ATGTATCGATATAATTATC
1 ATGTATCGATACAATTATC
** *
7707892 ATGTATCGATACAAACAGTGGT
1 ATGTATCGATACAATTA-T--C
* * * *
7707914 AGGGTAGCTACTACCAGTT-TC
1 A-TGTATCGA-TA-CAATTATC
7707935 ATGTATCGATACAATTATC
1 ATGTATCGATACAATTATC
*
7707954 TATGTATCGATACAATGATC
1 -ATGTATCGATACAATTATC
*
7707974 ACGTATCGATACAATGTATC
1 ATGTATCGATACAAT-TATC
7707994 GATACAAAGC
Statistics
Matches: 93, Mismatches: 19, Indels: 18
0.72 0.15 0.14
Matches are distributed among these distances:
18 4 0.04
19 35 0.38
20 42 0.45
21 1 0.01
22 1 0.01
23 6 0.06
24 2 0.02
25 2 0.02
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Consensus pattern (19 bp):
ATGTATCGATACAATTATC
Found at i:7707894 original size:19 final size:20
Alignment explanation
Indices: 7707853--7707905 Score: 90
Period size: 19 Copynumber: 2.7 Consensus size: 20
7707843 GTTACAAGCA
7707853 ATGTATCGATACAATTCATC
1 ATGTATCGATACAATTCATC
*
7707873 ATGTATCGATATAATT-ATC
1 ATGTATCGATACAATTCATC
7707892 ATGTATCGATACAA
1 ATGTATCGATACAA
7707906 ACAGTGGTAG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 16 0.52
20 15 0.48
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACAATTCATC
Found at i:7707994 original size:13 final size:13
Alignment explanation
Indices: 7707976--7708000 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7707966 CAATGATCAC
7707976 GTATCGATACAAT
1 GTATCGATACAAT
7707989 GTATCGATACAA
1 GTATCGATACAA
7708001 AGCATAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (13 bp):
GTATCGATACAAT
Found at i:7712746 original size:22 final size:23
Alignment explanation
Indices: 7712709--7712773 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 23
7712699 CCTAGTTTTC
* *
7712709 TTAGTTTTCATGTGTTTTCAT-A
1 TTAGTTTTCTTATGTTTTCATGA
* *
7712731 TTATTTTTCTTATGTTTT-ATGC
1 TTAGTTTTCTTATGTTTTCATGA
7712753 TTAGTTTTCTTA-GTTTTCATG
1 TTAGTTTTCTTATGTTTTCATG
7712774 CGTTTTTGTC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 7 0.19
22 29 0.81
ACGTcount: A:0.15, C:0.09, G:0.12, T:0.63
Consensus pattern (23 bp):
TTAGTTTTCTTATGTTTTCATGA
Found at i:7712791 original size:53 final size:53
Alignment explanation
Indices: 7712689--7712800 Score: 170
Period size: 53 Copynumber: 2.1 Consensus size: 53
7712679 TGTTTTTTAA
*
7712689 ATGTTTTATGCCTAGTTTTCTTAGTTTTCATGTGTTTTCATATTATTTTTCTT
1 ATGTTTTATGCCTAGTTTTCTTAGTTTTCATGCGTTTTCATATTATTTTTCTT
* ** * *
7712742 ATGTTTTATGCTTAGTTTTCTTAGTTTTCATGCGTTTTTGTCTTGTTTTTCTT
1 ATGTTTTATGCCTAGTTTTCTTAGTTTTCATGCGTTTTCATATTATTTTTCTT
7712795 ATGTTT
1 ATGTTT
7712801 CAACCTTATT
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.12, C:0.11, G:0.13, T:0.63
Consensus pattern (53 bp):
ATGTTTTATGCCTAGTTTTCTTAGTTTTCATGCGTTTTCATATTATTTTTCTT
Found at i:7721868 original size:2 final size:2
Alignment explanation
Indices: 7721859--7721897 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
7721849 GTTTTTTTTA
7721859 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7721898 GTACATATCG
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:7723054 original size:29 final size:29
Alignment explanation
Indices: 7723020--7723082 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
7723010 AACTTTAAAA
* *
7723020 TATTTTTG-TATAAATATTTTGACACAAG
1 TATTTTTGACATAAATATTTCGACACAAG
* *
7723048 TATTTTTGACATAAATATTTCGATACAGG
1 TATTTTTGACATAAATATTTCGACACAAG
7723077 TATTTT
1 TATTTT
7723083 AACGTAAGTA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 8 0.27
29 22 0.73
ACGTcount: A:0.33, C:0.08, G:0.11, T:0.48
Consensus pattern (29 bp):
TATTTTTGACATAAATATTTCGACACAAG
Found at i:7723066 original size:15 final size:15
Alignment explanation
Indices: 7723017--7723067 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
7723007 TTTAACTTTA
*
7723017 AAATATTTTTG-TAT
1 AAATATTTTTGACAT
*
7723031 AAATA-TTTTGACAC
1 AAATATTTTTGACAT
*
7723045 AAGTATTTTTGACAT
1 AAATATTTTTGACAT
7723060 AAATATTT
1 AAATATTT
7723068 CGATACAGGT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
13 5 0.17
14 10 0.33
15 15 0.50
ACGTcount: A:0.39, C:0.06, G:0.08, T:0.47
Consensus pattern (15 bp):
AAATATTTTTGACAT
Found at i:7723081 original size:43 final size:43
Alignment explanation
Indices: 7723033--7723127 Score: 109
Period size: 43 Copynumber: 2.2 Consensus size: 43
7723023 TTTTGTATAA
* *
7723033 ATATTTTGACACAAGTATTTTTGACATAAATATTTCGATACAG
1 ATATTTTGACACAAGTATTTTCGACATAAATATTTCGACACAG
* * ** ** *
7723076 GTATTTTAACGTAAGTATTTTCGGTATAAATATTTTGACACAG
1 ATATTTTGACACAAGTATTTTCGACATAAATATTTCGACACAG
7723119 ATATTTTGA
1 ATATTTTGA
7723128 TATAGGTATT
Statistics
Matches: 41, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.42
Consensus pattern (43 bp):
ATATTTTGACACAAGTATTTTCGACATAAATATTTCGACACAG
Found at i:7723137 original size:43 final size:43
Alignment explanation
Indices: 7723033--7723139 Score: 106
Period size: 43 Copynumber: 2.5 Consensus size: 43
7723023 TTTTGTATAA
* * * ** *
7723033 ATATTTTGACACAAGTATTTTTGACATAAATATTTCGATACAG
1 ATATTTTAACATAAGTATTTTCGGTATAAATATTTCGACACAG
* * *
7723076 GTATTTTAACGTAAGTATTTTCGGTATAAATATTTTGACACAG
1 ATATTTTAACATAAGTATTTTCGGTATAAATATTTCGACACAG
* * *
7723119 ATATTTTGATATAGGTATTTT
1 ATATTTTAACATAAGTATTTT
7723140 TTAAAAAATA
Statistics
Matches: 50, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
43 50 1.00
ACGTcount: A:0.34, C:0.08, G:0.14, T:0.44
Consensus pattern (43 bp):
ATATTTTAACATAAGTATTTTCGGTATAAATATTTCGACACAG
Found at i:7725880 original size:3 final size:3
Alignment explanation
Indices: 7725872--7725906 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
7725862 TTAATGAATA
7725872 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
7725907 GAACGTTTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:7726720 original size:16 final size:16
Alignment explanation
Indices: 7726699--7726769 Score: 58
Period size: 16 Copynumber: 4.5 Consensus size: 16
7726689 TTGGATCATA
*
7726699 TTATTTTAGATTTTAT
1 TTATTTTAGATTTAAT
7726715 TTA-TTTA-ATTTTATAT
1 TTATTTTAGA-TTTA-AT
* *
7726731 TT-TTTTAAATTTAAA
1 TTATTTTAGATTTAAT
*
7726746 TTATTTTAGAATTAAT
1 TTATTTTAGATTTAAT
*
7726762 TTTTTTTA
1 TTATTTTA
7726770 AATAAATTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
14 1 0.02
15 10 0.23
16 32 0.73
17 1 0.02
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (16 bp):
TTATTTTAGATTTAAT
Found at i:7726782 original size:14 final size:15
Alignment explanation
Indices: 7726733--7726784 Score: 61
Period size: 16 Copynumber: 3.4 Consensus size: 15
7726723 TTTTATATTT
7726733 TTTTAAATTTAAATTA
1 TTTTAAA-TTAAATTA
* *
7726749 TTTTAGAATTAATTTT
1 TTTTA-AATTAAATTA
7726765 TTTTAAA-TAAATTA
1 TTTTAAATTAAATTA
7726779 TTTTAA
1 TTTTAA
7726785 TTTTTATATT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
14 11 0.35
15 2 0.06
16 16 0.52
17 2 0.06
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (15 bp):
TTTTAAATTAAATTA
Found at i:7729036 original size:20 final size:21
Alignment explanation
Indices: 7729011--7729050 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7729001 AAATTTAATC
7729011 ATAAAAAA-ATTTAAATATTA
1 ATAAAAAATATTTAAATATTA
*
7729031 ATAAAAAATATTTTAATATT
1 ATAAAAAATATTTAAATATT
7729051 TTTAAATAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
ATAAAAAATATTTAAATATTA
Found at i:7730614 original size:2 final size:2
Alignment explanation
Indices: 7730602--7730638 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
7730592 CTTGCTATGT
*
7730602 TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7730639 GTAGAAAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:7730860 original size:2 final size:2
Alignment explanation
Indices: 7730853--7730882 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7730843 TGGCTTTTGT
7730853 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7730883 CTTTGAACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7731894 original size:2 final size:2
Alignment explanation
Indices: 7731870--7731916 Score: 69
Period size: 2 Copynumber: 24.0 Consensus size: 2
7731860 TCATTCATGA
* *
7731870 AT AT A- AT AT AA AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7731911 AT AT AT
1 AT AT AT
7731917 CTCCTGATTC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
1 1 0.03
2 39 0.98
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:7732143 original size:2 final size:2
Alignment explanation
Indices: 7732136--7732166 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7732126 TGGTTACACT
7732136 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
7732167 TTCTGAAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:7732654 original size:3 final size:3
Alignment explanation
Indices: 7732648--7732688 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
7732638 ATCATCAAAC
7732648 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
7732689 ATACCTTTTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
CTT
Found at i:7733600 original size:1 final size:1
Alignment explanation
Indices: 7733594--7733627 Score: 59
Period size: 1 Copynumber: 34.0 Consensus size: 1
7733584 AGACCCAGTT
*
7733594 CCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
7733628 ATTCTAGGTG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 31 1.00
ACGTcount: A:0.00, C:0.97, G:0.00, T:0.03
Consensus pattern (1 bp):
C
Found at i:7737199 original size:21 final size:21
Alignment explanation
Indices: 7737175--7737218 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
7737165 AAGCACATCA
*
7737175 ATTAAAAGTGATATTATACAT
1 ATTAAAAGTGATATTAGACAT
7737196 ATTAAAAGTGATATTAGACAT
1 ATTAAAAGTGATATTAGACAT
7737217 AT
1 AT
7737219 AAAGCATAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.48, C:0.05, G:0.11, T:0.36
Consensus pattern (21 bp):
ATTAAAAGTGATATTAGACAT
Found at i:7741281 original size:51 final size:51
Alignment explanation
Indices: 7741217--7741333 Score: 189
Period size: 51 Copynumber: 2.3 Consensus size: 51
7741207 TACATTATTC
* *
7741217 AATGTATCAATACATCTGGGTAAAAAGACAGAATATATCGATACATTGAAA
1 AATGTATCGATACATCTGGGTAAAAAGACAGAATATATCGATACATTCAAA
* *
7741268 AATGTATCGATACATCTGGGTAAAAAGACAGAATGTATCGATACATTCATA
1 AATGTATCGATACATCTGGGTAAAAAGACAGAATATATCGATACATTCAAA
*
7741319 CATGTATCGATACAT
1 AATGTATCGATACAT
7741334 TGAAAAATGT
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 61 1.00
ACGTcount: A:0.43, C:0.14, G:0.16, T:0.27
Consensus pattern (51 bp):
AATGTATCGATACATCTGGGTAAAAAGACAGAATATATCGATACATTCAAA
Found at i:7741343 original size:20 final size:20
Alignment explanation
Indices: 7741299--7741350 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
7741289 AAAAAGACAG
*
7741299 AATGTATCGATACATTCATA
1 AATGTATCGATACATTCAAA
* *
7741319 CATGTATCGATACATTGAAA
1 AATGTATCGATACATTCAAA
*
7741339 AATGTTTCGATA
1 AATGTATCGATA
7741351 TATCTGGGTA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTCAAA
Found at i:7742465 original size:145 final size:145
Alignment explanation
Indices: 7742207--7742549 Score: 441
Period size: 145 Copynumber: 2.4 Consensus size: 145
7742197 TTCCACTAAC
* * *
7742207 TTGTGTGGGCTTTGAAAAGAGT-TG-CACCGACTTGTGTGTGCTTTGAAAGGGTGCCACCGACTT
1 TTGTGTGGGCTTTGAAAAG-GTATGCCACTGAC-T-TGTGAGCTTTGAAAGGGTGCCACCAACTT
* * *
7742270 GTGAACTTTGAAAGGGTATGCCACTAACTTGTGGGCTTTAAAAGGGTGCCA-CTGACTTGTGGGC
63 GTGAACTTTGAAAGGATATGCCACTAACTTGTGGGCTTTAAAAGGATGCCATC-GACTTGTAGGC
7742334 TTTGAAAGGATGCCACTGA
127 TTTGAAAGGATGCCACTGA
* *
7742353 TTTGTGTGGGTTTTGAAAAGGTATGCCACTGACTTGTGAGCTTTGAAAGGGTGCCACTAACTTGT
1 -TTGTGTGGGCTTTGAAAAGGTATGCCACTGACTTGTGAGCTTTGAAAGGGTGCCACCAACTTGT
* *
7742418 GAGCTTTTG-AA-GATATGCCACTAACTTGTGGGCTTTGAAAGGATGCCATCGACTTGTAGGCTT
65 GAAC-TTTGAAAGGATATGCCACTAACTTGTGGGCTTTAAAAGGATGCCATCGACTTGTAGGCTT
*
7742481 TGAAAGGGTGCCACTGA
129 TGAAAGGATGCCACTGA
* * * *
7742498 CT-TGTGGGCTTT-AAAAAG-ATGCCACTGACTTGTGGGCTTTGAAAGGATGCCA
1 TTGTGTGGGCTTTGAAAAGGTATGCCACTGACTTGTGAGCTTTGAAAGGGTGCCA
7742550 TTGACCTGTG
Statistics
Matches: 176, Mismatches: 16, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
141 32 0.18
142 5 0.03
143 9 0.05
144 1 0.01
145 62 0.35
146 36 0.20
147 25 0.14
148 6 0.03
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (145 bp):
TTGTGTGGGCTTTGAAAAGGTATGCCACTGACTTGTGAGCTTTGAAAGGGTGCCACCAACTTGTG
AACTTTGAAAGGATATGCCACTAACTTGTGGGCTTTAAAAGGATGCCATCGACTTGTAGGCTTTG
AAAGGATGCCACTGA
Found at i:7742574 original size:28 final size:28
Alignment explanation
Indices: 7742210--7742568 Score: 373
Period size: 28 Copynumber: 12.5 Consensus size: 28
7742200 CACTAACTTG
* *
7742210 TGTGGGCTTTGAAAAGAGTTG-CACCGACT
1 TGTGGGCTTTG-AAAG-GATGCCACTGACT
* *
7742239 TGTGTGTGCTTTGAAAGGGTGCCACCGACT
1 TGTG-G-GCTTTGAAAGGATGCCACTGACT
** *
7742269 TGTGAACTTTGAAAGGGTATGCCACTAACT
1 TGTGGGCTTTGAAA-GG-ATGCCACTGACT
* *
7742299 TGTGGGCTTTAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
7742327 TGTGGGCTTTGAAAGGATGCCACTGATTT
1 TGTGGGCTTTGAAAGGATGCCACTGA-CT
*
7742356 GTGTGGGTTTTGAAAAGGTATGCCACTGACT
1 -TGTGGGCTTTG-AAAGG-ATGCCACTGACT
* * *
7742387 TGTGAGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
7742415 TGTGAGCTTTTG-AAGATATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
7742444 TGTGGGCTTTGAAAGGATGCCA-TCGACT
1 TGTGGGCTTTGAAAGGATGCCACT-GACT
* *
7742472 TGTAGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
7742500 TGTGGGCTTTAAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
7742528 TGTGGGCTTTGAAAGGATGCCATTGACC
1 TGTGGGCTTTGAAAGGATGCCACTGACT
7742556 TGTGGGCTTTGAA
1 TGTGGGCTTTGAA
7742569 GAGATGAACG
Statistics
Matches: 281, Mismatches: 35, Indels: 29
0.81 0.10 0.08
Matches are distributed among these distances:
27 1 0.00
28 160 0.57
29 42 0.15
30 56 0.20
31 12 0.04
32 10 0.04
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
TGTGGGCTTTGAAAGGATGCCACTGACT
Found at i:7742616 original size:14 final size:14
Alignment explanation
Indices: 7742579--7742616 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
7742569 GAGATGAACG
*
7742579 TTCTAGACAAAAGT
1 TTCTAGACAATAGT
7742593 TT-TAGACAATAGT
1 TTCTAGACAATAGT
*
7742606 TTCTTGACAAT
1 TTCTAGACAAT
7742617 TGGCAAATTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
13 12 0.57
14 9 0.43
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (14 bp):
TTCTAGACAATAGT
Found at i:7743825 original size:16 final size:15
Alignment explanation
Indices: 7743806--7743867 Score: 70
Period size: 15 Copynumber: 3.9 Consensus size: 15
7743796 ATTTGGACCC
*
7743806 TTTTTTGTTTGTTTTTT
1 TTTTTTG-TT-TTTTTG
7743823 TTTTTTGTTTTTTTG
1 TTTTTTGTTTTTTTG
*
7743838 TTTTTGGTTTTTTCTG
1 TTTTTTGTTTTTT-TG
*
7743854 TTTTTTATTTTTTT
1 TTTTTTGTTTTTTT
7743868 TGGTACGAAG
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
15 18 0.45
16 15 0.38
17 7 0.17
ACGTcount: A:0.02, C:0.02, G:0.11, T:0.85
Consensus pattern (15 bp):
TTTTTTGTTTTTTTG
Found at i:7743833 original size:8 final size:8
Alignment explanation
Indices: 7743806--7743869 Score: 69
Period size: 8 Copynumber: 7.9 Consensus size: 8
7743796 ATTTGGACCC
7743806 TTTTTTGT
1 TTTTTTGT
*
7743814 TTGTTTTTT
1 TT-TTTTGT
7743823 TTTTTTGT
1 TTTTTTGT
7743831 TTTTTTG-
1 TTTTTTGT
*
7743838 TTTTTGGT
1 TTTTTTGT
7743846 TTTTTCTGT
1 TTTTT-TGT
7743855 TTTTTAT-T
1 TTTTT-TGT
7743863 TTTTTTG
1 TTTTTTG
7743870 GTACGAAGGA
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
7 7 0.15
8 25 0.53
9 15 0.32
ACGTcount: A:0.02, C:0.02, G:0.12, T:0.84
Consensus pattern (8 bp):
TTTTTTGT
Found at i:7757823 original size:20 final size:20
Alignment explanation
Indices: 7757798--7757873 Score: 100
Period size: 20 Copynumber: 3.8 Consensus size: 20
7757788 GTAAAAAGAT
7757798 AGAATGTATCGATACATTAA
1 AGAATGTATCGATACATTAA
*
7757818 AGAATGTATCGATACATTCA
1 AGAATGTATCGATACATTAA
* *
7757838 ATAATATATCGATACATTGAA
1 AGAATGTATCGATACATT-AA
*
7757859 A-AATTTATCGATACA
1 AGAATGTATCGATACA
7757874 CCTAGGTAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
20 48 0.96
21 2 0.04
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.32
Consensus pattern (20 bp):
AGAATGTATCGATACATTAA
Found at i:7757895 original size:71 final size:71
Alignment explanation
Indices: 7757820--7757956 Score: 186
Period size: 71 Copynumber: 1.9 Consensus size: 71
7757810 TACATTAAAG
* *
7757820 AATGTATCGATACATTCA-ATAATATATCGATACATTGAAAAATTTATCGATACACCTAGGTAAA
1 AATGTATCGATACATTCATAT-ATATATCGATACATTGAAAAATGTATCGATACAACTAGGTAAA
7757884 AAGACAA
65 AAGACAA
* * * * * *
7757891 AATGTGTCGATACATTCATATATGTATTGATACGTTGAAAAATGTATTGATATAACTAGGTAAAA
1 AATGTATCGATACATTCATATATATATCGATACATTGAAAAATGTATCGATACAACTAGGTAAAA
7757956 A
66 A
7757957 TGTGACTTTT
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
71 55 0.96
72 2 0.04
ACGTcount: A:0.44, C:0.11, G:0.14, T:0.31
Consensus pattern (71 bp):
AATGTATCGATACATTCATATATATATCGATACATTGAAAAATGTATCGATACAACTAGGTAAAA
AGACAA
Found at i:7757922 original size:20 final size:20
Alignment explanation
Indices: 7757889--7757942 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 20
7757879 GTAAAAAGAC
* *
7757889 AAAATGTGTCGATACATTCA
1 AAAATGTATTGATACATTCA
* * * *
7757909 TATATGTATTGATACGTTGA
1 AAAATGTATTGATACATTCA
7757929 AAAATGTATTGATA
1 AAAATGTATTGATA
7757943 TAACTAGGTA
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.39, C:0.07, G:0.17, T:0.37
Consensus pattern (20 bp):
AAAATGTATTGATACATTCA
Found at i:7765502 original size:26 final size:26
Alignment explanation
Indices: 7765466--7765515 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
7765456 ATATTTTCTT
*
7765466 GATTTTCTTAATTTATTTTTGAATTCA
1 GATTTTCTTAATTTAATTTT-AATTCA
7765493 GATTTT-TTAATTTAATTTTAATT
1 GATTTTCTTAATTTAATTTTAATT
7765516 TTTTTATAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 4 0.18
26 12 0.55
27 6 0.27
ACGTcount: A:0.28, C:0.04, G:0.06, T:0.62
Consensus pattern (26 bp):
GATTTTCTTAATTTAATTTTAATTCA
Found at i:7765928 original size:29 final size:28
Alignment explanation
Indices: 7765876--7765930 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 28
7765866 AAACTATTAA
7765876 AATATTAATATAATTATTTTAATATTGT
1 AATATTAATATAATTATTTTAATATTGT
*
7765904 AATATTTAATAT-TTTATTTTAAATATT
1 AATA-TTAATATAATTATTTT-AATATT
7765931 ATTAAACATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 11 0.46
29 13 0.54
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (28 bp):
AATATTAATATAATTATTTTAATATTGT
Found at i:7773724 original size:23 final size:25
Alignment explanation
Indices: 7773672--7773726 Score: 62
Period size: 23 Copynumber: 2.3 Consensus size: 25
7773662 GAAAAATTAT
* *
7773672 TTTTATTTTAATTTTGGTTGAATTG
1 TTTTATTTTAACTATGGTTGAATTG
*
7773697 -ATTATTTT-ACTATGGTT-AATTG
1 TTTTATTTTAACTATGGTTGAATTG
7773719 TTTTATTT
1 TTTTATTT
7773727 AAATAAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
22 5 0.20
23 13 0.52
24 7 0.28
ACGTcount: A:0.22, C:0.02, G:0.13, T:0.64
Consensus pattern (25 bp):
TTTTATTTTAACTATGGTTGAATTG
Found at i:7779324 original size:34 final size:34
Alignment explanation
Indices: 7779274--7779558 Score: 453
Period size: 34 Copynumber: 8.4 Consensus size: 34
7779264 AAATATTTTA
* * * *
7779274 CTCACCTAACACATTACCTAACACACCTAATATT
1 CTCACCAAATACATCACCTAACACACCTAACATT
* * * * *
7779308 TTCACCAAATAAATTACCTAACACATCTAATATT
1 CTCACCAAATACATCACCTAACACACCTAACATT
7779342 CTCACCAAATACATCACCTAACACACCTAACATT
1 CTCACCAAATACATCACCTAACACACCTAACATT
* * *
7779376 CTCACCAAATACATTACCTAACACATCTAATATT
1 CTCACCAAATACATCACCTAACACACCTAACATT
7779410 CTCACCAAATACATCACCTAACACACCTAACATT
1 CTCACCAAATACATCACCTAACACACCTAACATT
*
7779444 CTCACCAAATACATCACCTAACACACCTAATATT
1 CTCACCAAATACATCACCTAACACACCTAACATT
7779478 CTCACCAAATACATCACCTAACACACCTAACATT
1 CTCACCAAATACATCACCTAACACACCTAACATT
7779512 CTCACCAAATACATCACCTAACACACCTAACATT
1 CTCACCAAATACATCACCTAACACACCTAACATT
7779546 CTCACCAAATACA
1 CTCACCAAATACA
7779559 CTTAACAAAG
Statistics
Matches: 233, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 233 1.00
ACGTcount: A:0.41, C:0.35, G:0.00, T:0.24
Consensus pattern (34 bp):
CTCACCAAATACATCACCTAACACACCTAACATT
Found at i:7784314 original size:34 final size:34
Alignment explanation
Indices: 7784266--7784550 Score: 462
Period size: 34 Copynumber: 8.4 Consensus size: 34
7784256 AAATATTTTA
* * * *
7784266 CTCACCTAACACATTACCTAACACACCTAATATT
1 CTCACCAAATACATCACCTAACACACCTAACATT
* * * *
7784300 TTCACCAAATACATTACCTAACACATCTAATATT
1 CTCACCAAATACATCACCTAACACACCTAACATT
7784334 CTCACCAAATACATCACCTAACACACCTAACATT
1 CTCACCAAATACATCACCTAACACACCTAACATT
* *
7784368 CTCACCAAATACATTACCTAACACATCTAACATT
1 CTCACCAAATACATCACCTAACACACCTAACATT
7784402 CTCACCAAATACATCACCTAACACACCTAACATT
1 CTCACCAAATACATCACCTAACACACCTAACATT
*
7784436 CTCACCAAATACATCACCTAACACACCTAATATT
1 CTCACCAAATACATCACCTAACACACCTAACATT
*
7784470 CTCACAAAATACATCACCTAACACACCTAACATT
1 CTCACCAAATACATCACCTAACACACCTAACATT
7784504 CTCACCAAATACATCACCTAACACACCTAACATT
1 CTCACCAAATACATCACCTAACACACCTAACATT
7784538 CTCACCAAATACA
1 CTCACCAAATACA
7784551 CTTAACAAAG
Statistics
Matches: 235, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 235 1.00
ACGTcount: A:0.41, C:0.35, G:0.00, T:0.24
Consensus pattern (34 bp):
CTCACCAAATACATCACCTAACACACCTAACATT
Found at i:7785918 original size:18 final size:17
Alignment explanation
Indices: 7785897--7785935 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
7785887 AAAATAACAT
*
7785897 TATTTTAATTGATAATTA
1 TATTTTAATT-ACAATTA
7785915 TATTTTTAATTACAATTA
1 TA-TTTTAATTACAATTA
7785933 TAT
1 TAT
7785936 AAAATATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
17 1 0.05
18 10 0.53
19 8 0.42
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (17 bp):
TATTTTAATTACAATTA
Found at i:7795575 original size:2 final size:2
Alignment explanation
Indices: 7795568--7795603 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
7795558 TGCATACAGC
* *
7795568 AT AT AT AT AT AT AT AT AT AT AT AG AT AT AG AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7795604 TAACAATATG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (2 bp):
AT
Found at i:7800955 original size:5 final size:5
Alignment explanation
Indices: 7800945--7801021 Score: 52
Period size: 5 Copynumber: 15.6 Consensus size: 5
7800935 AAATAATAAA
* * * *
7800945 TAATT TAATT TAATT TACATT T-TTT TATTT TAATT T-ATT AAATT TAAAT
1 TAATT TAATT TAATT TA-ATT TAATT TAATT TAATT TAATT TAATT TAATT
* * *
7800994 T-ATT TAATA TAAAT TATTT TAAATT TAA
1 TAATT TAATT TAATT TAATT T-AATT TAA
7801022 ATAATTTTAA
Statistics
Matches: 55, Mismatches: 12, Indels: 10
0.71 0.16 0.13
Matches are distributed among these distances:
4 9 0.16
5 38 0.69
6 8 0.15
ACGTcount: A:0.40, C:0.01, G:0.00, T:0.58
Consensus pattern (5 bp):
TAATT
Found at i:7800991 original size:14 final size:14
Alignment explanation
Indices: 7800945--7801012 Score: 64
Period size: 14 Copynumber: 4.7 Consensus size: 14
7800935 AAATAATAAA
7800945 TAATTTAATTTAATT
1 TAATTT-ATTTAATT
* *
7800960 TACATTTTTTTATTT
1 TA-ATTTATTTAATT
*
7800975 TAATTTATTAAATT
1 TAATTTATTTAATT
* *
7800989 TAAATTATTTAATA
1 TAATTTATTTAATT
*
7801003 TAAATTATTT
1 TAATTTATTT
7801013 TAAATTTAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
14 30 0.68
15 10 0.23
16 4 0.09
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.60
Consensus pattern (14 bp):
TAATTTATTTAATT
Found at i:7801000 original size:15 final size:15
Alignment explanation
Indices: 7800973--7801033 Score: 63
Period size: 14 Copynumber: 4.1 Consensus size: 15
7800963 ATTTTTTTAT
*
7800973 TTTAATTTA-TTAAA
1 TTTAAATTATTTAAA
7800987 TTTAAATTATTT-AA
1 TTTAAATTATTTAAA
*
7801001 TATAAATTATTTTAAA
1 TTTAAATTA-TTTAAA
* *
7801017 TTTAAATAATTTTAA
1 TTTAAATTATTTAAA
7801032 TT
1 TT
7801034 AATCTTTTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
14 18 0.46
15 12 0.31
16 9 0.23
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TTTAAATTATTTAAA
Found at i:7801028 original size:16 final size:16
Alignment explanation
Indices: 7800982--7801085 Score: 80
Period size: 16 Copynumber: 6.9 Consensus size: 16
7800972 TTTTAATTTA
7800982 TTAAATTTAAATTA-T
1 TTAAATTTAAATTATT
*
7800997 TT-AATATAAATTATT
1 TTAAATTTAAATTATT
*
7801012 TTAAATTTAAATAATT
1 TTAAATTTAAATTATT
7801028 TT-AA-TT-AATCT-TT
1 TTAAATTTAAAT-TATT
* * *
7801041 TT--AGTTATATAATT
1 TTAAATTTAAATTATT
*
7801055 TTAAATTTATATTATT
1 TTAAATTTAAATTATT
*
7801071 TTAAATTCAAATTAT
1 TTAAATTTAAATTAT
7801086 CTTGATAAAA
Statistics
Matches: 71, Mismatches: 10, Indels: 15
0.74 0.10 0.16
Matches are distributed among these distances:
12 1 0.01
13 9 0.13
14 18 0.25
15 7 0.10
16 36 0.51
ACGTcount: A:0.42, C:0.02, G:0.01, T:0.55
Consensus pattern (16 bp):
TTAAATTTAAATTATT
Found at i:7801248 original size:18 final size:17
Alignment explanation
Indices: 7801227--7801260 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
7801217 TTCGTCTAGT
7801227 TTTATTTGATATTTTTTA
1 TTTATTT-ATATTTTTTA
*
7801245 TTTATTTTTATTTTTT
1 TTTATTTATATTTTTT
7801261 TAAATAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (17 bp):
TTTATTTATATTTTTTA
Done.