Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold25
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9553305
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 6276 characters in sequence are not A, C, G, or T
File 52 of 56
Found at i:8907807 original size:97 final size:97
Alignment explanation
Indices: 8907609--8907796 Score: 220
Period size: 97 Copynumber: 1.9 Consensus size: 97
8907599 CCAACTCCCT
* * * *
8907609 TTTTTAAACTCGTTAAGATTTAAATTTTATTTTTACTTAAATTATTATTTATCGAGGATACTCCA
1 TTTTTAAACTCGTCAAGATTTAAATCTTATTTTTACCTAAATTATAATTTATCGAGGATACTCCA
* * * *
8907674 ATCCCATGCTTTCAAGGGGATACTCTAACCCA
66 ACCCCATGCCTCCAAGGGAATACTCTAACCCA
* *
8907706 TTTTTAAACTTGTCAAGATTTAAATCTTATTTTTGCCTAAATTATAATCATT-T-G-GGATACTC
1 TTTTTAAACTCGTCAAGATTTAAATCTTATTTTTACCTAAATTATAAT--TTATCGAGGATACTC
* * *
8907768 CAACCCCATTCCTCCGAGGGAATATTCTA
64 CAACCCCATGCCTCCAAGGGAATACTCTA
8907797 GCCCCGTTTT
Statistics
Matches: 76, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
96 30 0.39
97 43 0.57
98 1 0.01
99 2 0.03
ACGTcount: A:0.30, C:0.19, G:0.11, T:0.40
Consensus pattern (97 bp):
TTTTTAAACTCGTCAAGATTTAAATCTTATTTTTACCTAAATTATAATTTATCGAGGATACTCCA
ACCCCATGCCTCCAAGGGAATACTCTAACCCA
Found at i:8908619 original size:53 final size:53
Alignment explanation
Indices: 8908554--8908672 Score: 211
Period size: 53 Copynumber: 2.2 Consensus size: 53
8908544 CACATTTTAA
* *
8908554 ATGTATCGATACAGGACATTGGCAGTAGCCAAATTTGTATCGATACACACAAT
1 ATGTATCGATACAGGACATTGGCAGTAGCCAAATTTGTATCAATACACAAAAT
*
8908607 ATGTATCGATACAGGTCATTGGCAGTAGCCAAATTTGTATCAATACACAAAAT
1 ATGTATCGATACAGGACATTGGCAGTAGCCAAATTTGTATCAATACACAAAAT
8908660 ATGTATCGATACA
1 ATGTATCGATACA
8908673 TTGGTAGTAG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
53 63 1.00
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.28
Consensus pattern (53 bp):
ATGTATCGATACAGGACATTGGCAGTAGCCAAATTTGTATCAATACACAAAAT
Found at i:8908765 original size:13 final size:13
Alignment explanation
Indices: 8908747--8908785 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
8908737 TCACTATTCA
8908747 TGTATCGATACAT
1 TGTATCGATACAT
* *
8908760 TGTATCGATATAG
1 TGTATCGATACAT
8908773 TGTATCGATACAT
1 TGTATCGATACAT
8908786 CATAAATAGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:8909318 original size:34 final size:35
Alignment explanation
Indices: 8909255--8909321 Score: 102
Period size: 36 Copynumber: 1.9 Consensus size: 35
8909245 CTAAGTGATT
8909255 GAGAGGTTTTATCTTAGCCTTTGAAAAAGATAGAGA
1 GAGAGGTTTTATCTTAGCCTTTG-AAAAGATAGAGA
8909291 GAGAGGTTTCTATCTTAGCC-TTG-AAAGATAG
1 GAGAGGTTT-TATCTTAGCCTTTGAAAAGATAG
8909322 TATTGTAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 8 0.27
36 12 0.40
37 10 0.33
ACGTcount: A:0.33, C:0.10, G:0.25, T:0.31
Consensus pattern (35 bp):
GAGAGGTTTTATCTTAGCCTTTGAAAAGATAGAGA
Found at i:8911897 original size:35 final size:33
Alignment explanation
Indices: 8911838--8911903 Score: 80
Period size: 34 Copynumber: 1.9 Consensus size: 33
8911828 ATTTGATAAA
* *
8911838 AATATTTTAAATGAAATTAATTATATCAAATAT
1 AATATTTTAAATGAAAATAATTATATAAAATAT
8911871 AATATATTTAAAT-ATAAATAATTTATATAAAAT
1 AATAT-TTTAAATGA-AAATAA-TTATATAAAAT
8911904 TATGAAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
33 6 0.21
34 12 0.43
35 10 0.36
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (33 bp):
AATATTTTAAATGAAAATAATTATATAAAATAT
Found at i:8915110 original size:10 final size:10
Alignment explanation
Indices: 8915095--8915154 Score: 52
Period size: 10 Copynumber: 5.8 Consensus size: 10
8915085 TTAAAAAAAA
8915095 TTTAAATTAT
1 TTTAAATTAT
8915105 TTTAAATT-T
1 TTTAAATTAT
*
8915114 GATTTATA-TAT
1 --TTTAAATTAT
*
8915125 TTTAAATTTTT
1 TTTAAA-TTAT
8915136 ATTTAAATTAT
1 -TTTAAATTAT
8915147 TTTAAATT
1 TTTAAATT
8915155 TAATTTATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
9 6 0.15
10 17 0.43
11 11 0.28
12 6 0.15
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.62
Consensus pattern (10 bp):
TTTAAATTAT
Found at i:8915118 original size:21 final size:21
Alignment explanation
Indices: 8915093--8915161 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
8915083 TTTTAAAAAA
8915093 AATTTAAATTATTTTAAATTT
1 AATTTAAATTATTTTAAATTT
* *
8915114 GATTTATA-TATTTTAAATTTT
1 AATTTAAATTATTTTAAA-TTT
*
8915135 TATTTAAATTATTTTAAATTT
1 AATTTAAATTATTTTAAATTT
8915156 AATTTA
1 AATTTA
8915162 TTAATAATTG
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
20 9 0.22
21 23 0.56
22 9 0.22
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.59
Consensus pattern (21 bp):
AATTTAAATTATTTTAAATTT
Found at i:8915160 original size:12 final size:11
Alignment explanation
Indices: 8915095--8915161 Score: 54
Period size: 11 Copynumber: 6.4 Consensus size: 11
8915085 TTAAAAAAAA
8915095 TTTAAA-TTAT
1 TTTAAATTTAT
8915105 TTTAAATTTGA-
1 TTTAAATTT-AT
*
8915116 TTT--ATATAT
1 TTTAAATTTAT
*
8915125 TTTAAATTTTT
1 TTTAAATTTAT
8915136 ATTTAAA-TTAT
1 -TTTAAATTTAT
*
8915147 TTTAAATTTAA
1 TTTAAATTTAT
8915158 TTTA
1 TTTA
8915162 TTAATAATTG
Statistics
Matches: 45, Mismatches: 5, Indels: 13
0.71 0.08 0.21
Matches are distributed among these distances:
8 1 0.02
9 6 0.13
10 12 0.27
11 19 0.42
12 7 0.16
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.61
Consensus pattern (11 bp):
TTTAAATTTAT
Found at i:8915335 original size:16 final size:16
Alignment explanation
Indices: 8915311--8915341 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8915301 AATATTTATC
*
8915311 TATTTATATCAATATT
1 TATTGATATCAATATT
8915327 TATTGATATCAATAT
1 TATTGATATCAATAT
8915342 GTAAAATTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.52
Consensus pattern (16 bp):
TATTGATATCAATATT
Found at i:8918344 original size:3 final size:3
Alignment explanation
Indices: 8918338--8918376 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
8918328 CAACTCTAAG
*
8918338 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TAA TGA
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA
8918377 AGAGGTTGAG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.36, C:0.00, G:0.31, T:0.33
Consensus pattern (3 bp):
TGA
Found at i:8919556 original size:25 final size:25
Alignment explanation
Indices: 8919521--8919573 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
8919511 GCATTGAAAA
8919521 CATTCTATTTGTCAAAGGTACCAAG
1 CATTCTATTTGTCAAAGGTACCAAG
* *
8919546 CATTCTGTTTGTCAAAGGTACCATG
1 CATTCTATTTGTCAAAGGTACCAAG
8919571 CAT
1 CAT
8919574 AACCTCTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (25 bp):
CATTCTATTTGTCAAAGGTACCAAG
Found at i:8919865 original size:20 final size:19
Alignment explanation
Indices: 8919840--8919907 Score: 67
Period size: 20 Copynumber: 3.8 Consensus size: 19
8919830 TTTTCACAAT
8919840 TTGTATCGATACATTGTTTA
1 TTGTATCGATACATT-TTTA
8919860 TTGTATCGAT--A----TA
1 TTGTATCGATACATTTTTA
8919873 TTGTATCGATACATTTTTTA
1 TTGTATCGATACA-TTTTTA
*
8919893 ATGTATCGATACATT
1 TTGTATCGATACATT
8919908 CAGGCATTTT
Statistics
Matches: 40, Mismatches: 1, Indels: 15
0.71 0.02 0.27
Matches are distributed among these distances:
13 12 0.30
15 1 0.03
18 1 0.03
19 2 0.05
20 24 0.60
ACGTcount: A:0.28, C:0.10, G:0.13, T:0.49
Consensus pattern (19 bp):
TTGTATCGATACATTTTTA
Found at i:8919874 original size:13 final size:13
Alignment explanation
Indices: 8919858--8919883 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8919848 ATACATTGTT
8919858 TATTGTATCGATA
1 TATTGTATCGATA
8919871 TATTGTATCGATA
1 TATTGTATCGATA
8919884 CATTTTTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (13 bp):
TATTGTATCGATA
Found at i:8919882 original size:33 final size:33
Alignment explanation
Indices: 8919840--8919903 Score: 110
Period size: 33 Copynumber: 1.9 Consensus size: 33
8919830 TTTTCACAAT
*
8919840 TTGTATCGATACATTGTTTATTGTATCGATATA
1 TTGTATCGATACATTGTTTAATGTATCGATATA
*
8919873 TTGTATCGATACATTTTTTAATGTATCGATA
1 TTGTATCGATACATTGTTTAATGTATCGATA
8919904 CATTCAGGCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.28, C:0.09, G:0.14, T:0.48
Consensus pattern (33 bp):
TTGTATCGATACATTGTTTAATGTATCGATATA
Found at i:8922336 original size:131 final size:131
Alignment explanation
Indices: 8922149--8922423 Score: 374
Period size: 131 Copynumber: 2.1 Consensus size: 131
8922139 TTCATTTCGA
*** * * ** * *
8922149 GGATACTCCAACCCCGGTTTTATTTCCAAAACATTAAT-TTTTCATAATCGGGGATACTCCAATC
1 GGATACTCCAACCCTAATTTTATTTCTAAAATACCAATCTTTTCACAATCGGAGATACTCCAATC
* * *
8922213 CCCTTA-TTCTTGAGAGGATACTCCAACTCCGGCTTTATTTCTAAAATATTAATTTCTCACAATC
66 CCCTTATTTC-CGAGAGGATACTCCAACCCCGGCTTTATTTCTAAAATATTAATTTCCCACAATC
8922277 GG
130 GG
*
8922279 GGATACTTCAACCCTAATTTTATTTCTAAAATACCAATCTTTTCACAATCGGAGATACTCCAATC
1 GGATACTCCAACCCTAATTTTATTTCTAAAATACCAATCTTTTCACAATCGGAGATACTCCAATC
* * * *
8922344 CCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTTCTAAAATATTGATTTCCCACAATTG
66 CCCTTATTTCCGAGAGGATACTCCAACCCCGGCTTTATTTCTAAAATATTAATTTCCCACAATCG
8922409 G
131 G
8922410 GGATACTCCAACCC
1 GGATACTCCAACCC
8922424 CGTTATTTTC
Statistics
Matches: 125, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
130 30 0.24
131 92 0.74
132 3 0.02
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (131 bp):
GGATACTCCAACCCTAATTTTATTTCTAAAATACCAATCTTTTCACAATCGGAGATACTCCAATC
CCCTTATTTCCGAGAGGATACTCCAACCCCGGCTTTATTTCTAAAATATTAATTTCCCACAATCG
G
Found at i:8934829 original size:1 final size:1
Alignment explanation
Indices: 8934825--8934890 Score: 51
Period size: 1 Copynumber: 66.0 Consensus size: 1
8934815 CTTCTTTTTT
* * *** * * * *
8934825 AAAAAAAACAAAAAAAAAAAAAACAAAACGCAAAAAAAACAAAAAAACAAAACAAAGAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
8934890 A
1 A
8934891 GAGAAAAGAA
Statistics
Matches: 49, Mismatches: 16, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 49 1.00
ACGTcount: A:0.86, C:0.11, G:0.03, T:0.00
Consensus pattern (1 bp):
A
Found at i:8934839 original size:8 final size:8
Alignment explanation
Indices: 8934826--8934888 Score: 67
Period size: 8 Copynumber: 7.9 Consensus size: 8
8934816 TTCTTTTTTA
8934826 AAAAAAAC
1 AAAAAAAC
8934834 AAAAAAA-
1 AAAAAAAC
8934841 AAAAAAAC
1 AAAAAAAC
**
8934849 -AAAACGC
1 AAAAAAAC
8934856 AAAAAAAAC
1 -AAAAAAAC
8934865 AAAAAAAC
1 AAAAAAAC
*
8934873 AAAACAAAG
1 AAAA-AAAC
8934882 AAAAAAA
1 AAAAAAA
8934889 AAGAGAAAAG
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
7 12 0.26
8 22 0.48
9 12 0.26
ACGTcount: A:0.86, C:0.11, G:0.03, T:0.00
Consensus pattern (8 bp):
AAAAAAAC
Found at i:8934905 original size:10 final size:10
Alignment explanation
Indices: 8934825--8934905 Score: 53
Period size: 10 Copynumber: 8.1 Consensus size: 10
8934815 CTTCTTTTTT
*
8934825 AAAAAAAACA
1 AAAAAAAAGA
8934835 AAAAAAAA-A
1 AAAAAAAAGA
8934844 AAAACAAAACG-
1 AAAA-AAAA-GA
*
8934855 CAAAAAAA-A
1 AAAAAAAAGA
* *
8934864 CAAAAAAA-C
1 AAAAAAAAGA
*
8934873 AAAACAAAGA
1 AAAAAAAAGA
8934883 AAAAAAAAGA
1 AAAAAAAAGA
8934893 GAAAAGAAAAGA
1 -AAAA-AAAAGA
8934905 A
1 A
8934906 CCTGCTTAAG
Statistics
Matches: 58, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
9 19 0.33
10 25 0.43
11 8 0.14
12 6 0.10
ACGTcount: A:0.84, C:0.09, G:0.07, T:0.00
Consensus pattern (10 bp):
AAAAAAAAGA
Found at i:8936021 original size:62 final size:61
Alignment explanation
Indices: 8935874--8936199 Score: 400
Period size: 62 Copynumber: 5.4 Consensus size: 61
8935864 TCTTTTCACT
* * * *
8935874 TTTTCAGTCCTCAAAGAGTAGGACGCC-TTT-C----AAAGCCCGCAAAAGCTGGTGGCAC
1 TTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCAC
* *
8935929 -CTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCAC
1 TTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCAC
*
8935989 TTTTCTAGTCCTCAAAGAGTAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCAC
1 TTTTC-AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCAC
* *
8936051 TTTTCTAGTCTTCAAAGAGCAGGACGCGTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA-
1 TTTTC-AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCAC
* * * **
8936112 TCTTCCAGTCCTCAAAGAGCAAGATG-CTTTCTCCTTGCAAAGCCCACACAAGTTGGTGGCAC
1 T-TTTCAGTCCTCAAAGAGCAGGACGCCTTT-TCCTTTTAAAGCCCACACAAGTTGGTGGCAC
** *
8936174 TTCCCAGTCCTCAAAGAGTAGGACGC
1 TTTTCAGTCCTCAAAGAGCAGGACGC
8936200 TCTCTCATTT
Statistics
Matches: 236, Mismatches: 23, Indels: 17
0.86 0.08 0.06
Matches are distributed among these distances:
54 23 0.10
55 3 0.01
56 1 0.00
60 24 0.10
61 69 0.29
62 116 0.49
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (61 bp):
TTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCAC
Found at i:8936054 original size:34 final size:34
Alignment explanation
Indices: 8935954--8936055 Score: 92
Period size: 34 Copynumber: 3.2 Consensus size: 34
8935944 AGCAGGATGC
8935954 CTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * **
8935988 CTTTT-C---T--AGTCCTCAAAGAGTAGGACGC-
1 CTTTTCCTTTTAAAGCCCACACA-AGTTGGTGGCA
8936016 CTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
8936050 CTTTTC
1 CTTTTC
8936056 TAGTCTTCAA
Statistics
Matches: 48, Mismatches: 12, Indels: 16
0.63 0.16 0.21
Matches are distributed among these distances:
28 12 0.25
29 8 0.17
30 1 0.02
32 1 0.02
33 8 0.17
34 18 0.38
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.33
Consensus pattern (34 bp):
CTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
Found at i:8936346 original size:161 final size:160
Alignment explanation
Indices: 8936056--8936352 Score: 429
Period size: 161 Copynumber: 1.8 Consensus size: 160
8936046 GGCACTTTTC
* *
8936056 TAGTCTTCAAAGAGCAGGACGCGTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCATCTTCCAGT
1 TAGTCCTCAAAGAGCAGGACGCGTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGT
8936121 CCTCAAAGAGCAAGATGCTTTCTCCTTGCAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTC
66 CCTCAAAGAGCAAGATGCTTTCTCCTTGCAAAGCCCACACAAGTTGGTGGCACTT-CCAGTCCTC
8936186 AAAGAGTAGGACGCTCTCTCATTTCACCCTT
130 AAAGAGTAGGACGCTCTCTCATTTCACCCTT
* * * *
8936217 TAGTCCTCAAAGAGTAGGATGCTTTTTCCTTTTAAAAGCCCACACAAGTTGGTGGCACCTTCTAG
1 TAGTCCTCAAAGAGCAGGACGCGTTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCACCTTCCAG
* ** * *
8936282 TCCTCAAAGAG-TAGATGCCTTT-TCCTTTTAAAGCCCACACATGTTGGTGGCACCCTT-TAGTC
65 TCCTCAAAGAGCAAGATG-CTTTCTCCTTGCAAAGCCCACACAAGTTGGTGGCA--CTTCCAGTC
8936344 CTCAAAGAG
127 CTCAAAGAG
8936353 CATGACGTCT
Statistics
Matches: 121, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
161 74 0.61
162 44 0.36
163 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.28
Consensus pattern (160 bp):
TAGTCCTCAAAGAGCAGGACGCGTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGT
CCTCAAAGAGCAAGATGCTTTCTCCTTGCAAAGCCCACACAAGTTGGTGGCACTTCCAGTCCTCA
AAGAGTAGGACGCTCTCTCATTTCACCCTT
Found at i:8936381 original size:222 final size:224
Alignment explanation
Indices: 8935994--8936420 Score: 630
Period size: 222 Copynumber: 1.9 Consensus size: 224
8935984 GGCACTTTTC
*
8935994 TAGTCCTCAAAGAGTAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAG
1 TAGTCCTCAAAGAGTAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTCTTCTAG
* * *
8936059 TCTTCAAAGAGCAGGACGCGTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCATCTTCCAGTCCT
66 TCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCT
*
8936124 CAAAGAGCAAGATGCTTTCTCCTTGCAAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAA
131 CAAAGAGCAAGACGCTTTCTCCTTGCAAAGCCCACACAAGTTGGTGGCACCTTCCCAGTCCTCAA
*
8936188 AGAGTAGGACGCTCTCTCATTTCACCCTT
196 AGAGCAGGACGCTCTCTCATTTCACCCTT
* *
8936217 TAGTCCTCAAAGAGTAGGATGCTTTTTCCTTTTAAAAGCCCACACAAGTTGGTGGCAC-CTTCTA
1 TAGTCCTCAAAGAGTAGGACGCCTTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCACTCTTCTA
* * * *
8936281 GTCCTCAAAGAGTA-GATGCCTTTTCCTTTTAAAGCCCACACATGTTGGTGGCACCCTT-TAGTC
65 GTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CCTTCCAGTC
* * * * * *
8936344 CTCAAAGAGCATGACGTCTTT-TCCTTTCGAAGCCCACACAAGTTGGTGGTACCTTTCTAGTCCT
129 CTCAAAGAGCAAGACG-CTTTCTCCTTGCAAAGCCCACACAAGTTGGTGGCACCTTCCCAGTCCT
8936408 CAAAGAGCAGGAC
193 CAAAGAGCAGGAC
8936421 ACCTTTTTCT
Statistics
Matches: 182, Mismatches: 18, Indels: 8
0.88 0.09 0.04
Matches are distributed among these distances:
222 81 0.45
223 77 0.42
224 24 0.13
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (224 bp):
TAGTCCTCAAAGAGTAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTCTTCTAG
TCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCT
CAAAGAGCAAGACGCTTTCTCCTTGCAAAGCCCACACAAGTTGGTGGCACCTTCCCAGTCCTCAA
AGAGCAGGACGCTCTCTCATTTCACCCTT
Found at i:8936467 original size:62 final size:62
Alignment explanation
Indices: 8936216--8936806 Score: 662
Period size: 62 Copynumber: 9.6 Consensus size: 62
8936206 ATTTCACCCT
* * *
8936216 TTAGTCCTCAAAGAGTAGGATG-CTTTTTCCTTTTAAAAGCCCACACAAGTTGGTGGCACCT-
1 TTAGTCCTCAAAGAGCAGGACGCCTTTTT-CTTTTCAAAGCCCACACAAGTTGGTGGCACCTC
* * * *
8936277 TCTAGTCCTCAAAGAGTA-GATGCCTTTTCCTTTT-AAAGCCCACACATGTTGGTGGCACC-C
1 T-TAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTC
* * * * * *
8936337 TTTAGTCCTCAAAGAGCATGACGTC-TTTTCCTTTCGAAGCCCACACAAGTTGGTGGTACCTT
1 -TTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTC
* * * *
8936399 TCTAGTCCTCAAAGAGCAGGACACCTTTTTCTTTTTAAAGCTCACACAAATTGGTGGCACCTC
1 T-TAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTC
* *
8936462 TTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACAAGCTGGTGGCACC-C
1 TTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTC
* * * * * *
8936523 TTTAGTCCTCAAAGAGAATGACGTC-TTTTCCTTTCGAAGCCCACAC-AGATTGGTGGCACCTT
1 -TTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAG-TTGGTGGCACCTC
* * **
8936585 TCTAGTCCTCAAAAAGAAGGATACCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTC
1 T-TAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTC
* *** * *
8936648 TTAGTCCTTAAAGAGCAGGACATTTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCCTT
1 TTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCA-CCTC
* ** * *
8936711 TTAGTCCTCAAAGAGCAAGACG-CTTTTTCTTTTCAAAGCCCACATGAGTTGGTGGCACTTT
1 TTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTC
* *
8936772 TTAGTCCTCAAAGAGTAGGACGCCTTTTCCTTTTC
1 TTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTC
8936807 TCCTTTGTCC
Statistics
Matches: 451, Mismatches: 62, Indels: 33
0.83 0.11 0.06
Matches are distributed among these distances:
60 48 0.11
61 92 0.20
62 224 0.50
63 85 0.19
64 2 0.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (62 bp):
TTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTC
Found at i:8936547 original size:186 final size:184
Alignment explanation
Indices: 8936217--8936805 Score: 803
Period size: 186 Copynumber: 3.2 Consensus size: 184
8936207 TTTCACCCTT
**
8936217 TAGTCCTCAAAGAGTAGGA-TGCTTTTTCCTTTTAAAAGCCCACACAAGTTGGTGGCACCT-TCT
1 TAGTCCTCAAAGAGTAGGACACCTTTTT-CTTTTAAAAGCCCACACAAGTTGGTGGCACCTCT-T
* * *
8936280 AGTCCTCAAAGAGTA-GATGCCTTTTCCTTTTAAAGCCCACACATGTTGGTGGCACCCTTTAGTC
64 AGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCCTTTAGTC
* *
8936344 CTCAAAGAGCATGACGTCTTTTCCTTTCGAAGCCCACACAAGTTGGTGGTACCTTTC
129 CTCAAAGAGAATGACGTCTTTTCCTTTCGAAGCCCACAC-AGTTGGTGGCACCTTTC
* * * *
8936401 TAGTCCTCAAAGAGCAGGACACCTTTTTCTTTTTAAAGCTCACACAAATTGGTGGCACCTCTTAG
1 TAGTCCTCAAAGAGTAGGACACCTTTTTCTTTTAAAAGCCCACACAAGTTGGTGGCACCTCTTAG
*
8936466 TCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACAAGCTGGTGGCACCCTTTAGTCC
66 TCCTCAAAGAGCAGGATGCCTTTTTCTTTT-AAAGCCCACACAAGTTGGTGGCACCCTTTAGTCC
8936531 TCAAAGAGAATGACGTCTTTTCCTTTCGAAGCCCACACAGATTGGTGGCACCTTTC
130 TCAAAGAGAATGACGTCTTTTCCTTTCGAAGCCCACACAG-TTGGTGGCACCTTTC
* * * *
8936587 TAGTCCTCAAAAAGAAGGATACCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTCTTAG
1 TAGTCCTCAAAGAGTAGGACACCTTTTTCTTTTAAAAGCCCACACAAGTTGGTGGCACCTCTTAG
* ****
8936652 TCCTTAAAGAGCAGGACATTTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCCTTTTAGTC
66 TCCTCAAAGAGCAGGATGCCTTTTTC-TTTTAAAGCCCACACAAGTTGGTGGCACCC-TTTAGTC
* * * *
8936717 CTCAAAGAGCAA-GACG-CTTTTTCTTTTCAAAGCCCACATGAGTTGGTGGCA-CTTTT
129 CTCAAAGAG-AATGACGTC-TTTTCCTTTCGAAGCCCACA-CAGTTGGTGGCACCTTTC
* *
8936773 TAGTCCTCAAAGAGTAGGACGCCTTTTCCTTTT
1 TAGTCCTCAAAGAGTAGGACACCTTTTTCTTTT
8936806 CTCCTTTGTC
Statistics
Matches: 362, Mismatches: 33, Indels: 18
0.88 0.08 0.04
Matches are distributed among these distances:
184 62 0.17
185 24 0.07
186 221 0.61
187 51 0.14
188 4 0.01
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (184 bp):
TAGTCCTCAAAGAGTAGGACACCTTTTTCTTTTAAAAGCCCACACAAGTTGGTGGCACCTCTTAG
TCCTCAAAGAGCAGGATGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCT
CAAAGAGAATGACGTCTTTTCCTTTCGAAGCCCACACAGTTGGTGGCACCTTTC
Found at i:8936910 original size:46 final size:44
Alignment explanation
Indices: 8936771--8937084 Score: 164
Period size: 41 Copynumber: 7.5 Consensus size: 44
8936761 GGTGGCACTT
* * *
8936771 TTTAGTCCTCAAAGAGTAGGACGC-C-T--TTTCCTT-TTCTCC
1 TTTAGTCCTCAAAGAGCAGGACACACTTCATTTCCTTCTTTTCC
* * * * *
8936810 TTT-GTCCTCAAAGAGTAAGACACATTTCATTTTCTT-TTTTTC
1 TTTAGTCCTCAAAGAGCAGGACACACTTCATTTCCTTCTTTTCC
* * *
8936852 TTTAATCCTCAAAGAGTAGGACGCACTTCATTTCCTTCTTTTCCC
1 TTTAGTCCTCAAAGAGCAGGACACACTTCATTTCCTTCTTTT-CC
* * *
8936897 TTCTAGTTCTCAAAGAGCAGGACGCACTTTATTT--TTCTTTTTCC
1 TT-TAGTCCTCAAAGAGCAGGACACACTTCATTTCCTTC-TTTTCC
* * *
8936941 TTT-GTCCTCAAAAAGCAGGACACATTTAATTTCC-T-TTTTCC
1 TTTAGTCCTCAAAGAGCAGGACACACTTCATTTCCTTCTTTTCC
* * ** **
8936982 TTT-G-CCTTCAAAGGGTAGGATGCA-TTTTTTTCCTT-TTTTCC
1 TTTAGTCC-TCAAAGAGCAGGACACACTTCATTTCCTTCTTTTCC
* * ** * * *
8937023 TTT-GTCCCCAAGGAGCAAAACCCATTTCA-TT-CTCCTTTTCC
1 TTTAGTCCTCAAAGAGCAGGACACACTTCATTTCCTTCTTTTCC
* *
8937064 -TTAATCCTTAAAGAGCAGGAC
1 TTTAGTCCTCAAAGAGCAGGAC
8937085 GCCCCATTCC
Statistics
Matches: 213, Mismatches: 45, Indels: 32
0.73 0.16 0.11
Matches are distributed among these distances:
38 18 0.08
39 3 0.01
40 14 0.07
41 62 0.29
42 41 0.19
43 30 0.14
44 11 0.05
45 7 0.03
46 27 0.13
ACGTcount: A:0.22, C:0.25, G:0.13, T:0.40
Consensus pattern (44 bp):
TTTAGTCCTCAAAGAGCAGGACACACTTCATTTCCTTCTTTTCC
Found at i:8936959 original size:42 final size:41
Alignment explanation
Indices: 8936775--8937029 Score: 209
Period size: 41 Copynumber: 6.1 Consensus size: 41
8936765 GCACTTTTTA
*
8936775 GTCCTCAAAGAGTAGGACGC----CTTTTCCTTTTCTCCTTT
1 GTCCTCAAAGAGTAGGACGCATTTATTTTCCTTTT-TCCTTT
* * * *
8936813 GTCCTCAAAGAGTAAGACACATTTCATTTTCTTTTTTTCTTT
1 GTCCTCAAAGAGTAGGACGCATTT-ATTTTCCTTTTTCCTTT
* *
8936855 AATCCTCAAAGAGTAGGACGCACTTCA-TTTCCTTCTTTTCCCTTCT
1 -GTCCTCAAAGAGTAGGACGCA-TTTATTTTCC-T-TTTT-CCTT-T
* * *
8936901 AGTTCTCAAAGAGCAGGACGCACTTTATTTTTCTTTTTCCTTT
1 -GTCCTCAAAGAGTAGGACGCA-TTTATTTTCCTTTTTCCTTT
* * * *
8936944 GTCCTCAAAAAGCAGGACACATTTAATTTCCTTTTTCCTTT
1 GTCCTCAAAGAGTAGGACGCATTTATTTTCCTTTTTCCTTT
* *
8936985 G-CCTTCAAAGGGTAGGATGCATTT-TTTTCCTTTTTTCCTTT
1 GTCC-TCAAAGAGTAGGACGCATTTATTTTCC-TTTTTCCTTT
8937026 GTCC
1 GTCC
8937030 CCAAGGAGCA
Statistics
Matches: 175, Mismatches: 27, Indels: 26
0.77 0.12 0.11
Matches are distributed among these distances:
38 18 0.10
40 7 0.04
41 45 0.26
42 29 0.17
43 30 0.17
44 10 0.06
45 7 0.04
46 25 0.14
47 4 0.02
ACGTcount: A:0.20, C:0.24, G:0.13, T:0.42
Consensus pattern (41 bp):
GTCCTCAAAGAGTAGGACGCATTTATTTTCCTTTTTCCTTT
Found at i:8936993 original size:41 final size:42
Alignment explanation
Indices: 8936797--8936993 Score: 141
Period size: 43 Copynumber: 4.6 Consensus size: 42
8936787 TAGGACGCCT
* * * *
8936797 TTTCCTTTTCTCCTTTGTCCTCAAAGAGTAAGACACA-TTTCAT
1 TTTCCTTTT-TCCTTTGTCCTCAAAAAGCAGGACACACTTT-AA
* * * * * * *
8936840 TTTCTTTTTTTCTTTAATCCTCAAAGAGTAGGACGCAC-TTCA
1 TTTCCTTTTTCCTTT-GTCCTCAAAAAGCAGGACACACTTTAA
* * * *
8936882 TTTCCTTCTTTTCCCTTCTAGTTCTCAAAGAGCAGGACGCACTTTAT
1 TTTCC-T-TTTT-CCTT-T-GTCCTCAAAAAGCAGGACACACTTTAA
*
8936929 TTTTCTTTTTCCTTTGTCCTCAAAAAGCAGGACACA-TTTAA
1 TTTCCTTTTTCCTTTGTCCTCAAAAAGCAGGACACACTTTAA
8936970 TTTCCTTTTTCCTTTG-CCTTCAAA
1 TTTCCTTTTTCCTTTGTCC-TCAAA
8936994 GGGTAGGATG
Statistics
Matches: 126, Mismatches: 20, Indels: 18
0.77 0.12 0.11
Matches are distributed among these distances:
40 2 0.02
41 24 0.19
42 27 0.21
43 30 0.24
44 8 0.06
45 7 0.06
46 22 0.17
47 6 0.05
ACGTcount: A:0.22, C:0.25, G:0.10, T:0.43
Consensus pattern (42 bp):
TTTCCTTTTTCCTTTGTCCTCAAAAAGCAGGACACACTTTAA
Found at i:8937709 original size:13 final size:13
Alignment explanation
Indices: 8937693--8937722 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
8937683 ATACATTGTT
*
8937693 CATTGTATTGATA
1 CATTGTATCGATA
8937706 CATTGTATCGATA
1 CATTGTATCGATA
8937719 CATT
1 CATT
8937723 CTGGGTTTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.43
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:8937710 original size:20 final size:20
Alignment explanation
Indices: 8937655--8937711 Score: 96
Period size: 20 Copynumber: 2.9 Consensus size: 20
8937645 TTTTCATAGT
* *
8937655 TTGTATCGATACATTATTCA
1 TTGTATTGATACATTGTTCA
8937675 TTGTATTGATACATTGTTCA
1 TTGTATTGATACATTGTTCA
8937695 TTGTATTGATACATTGT
1 TTGTATTGATACATTGT
8937712 ATCGATACAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.26, C:0.11, G:0.14, T:0.49
Consensus pattern (20 bp):
TTGTATTGATACATTGTTCA
Found at i:8942015 original size:20 final size:19
Alignment explanation
Indices: 8941983--8942058 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 19
8941973 AAAAAGACAT
*
8941983 AATGTATCAATACATTGAA
1 AATGTATCGATACATTGAA
* *
8942002 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTGA-A
* *
8942023 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTG-AA
8942043 AATGTATCGATACATT
1 AATGTATCGATACATT
8942059 TGGGTAAAAA
Statistics
Matches: 45, Mismatches: 9, Indels: 4
0.78 0.16 0.07
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.34
Consensus pattern (19 bp):
AATGTATCGATACATTGAA
Found at i:8942028 original size:40 final size:39
Alignment explanation
Indices: 8941980--8942058 Score: 113
Period size: 40 Copynumber: 2.0 Consensus size: 39
8941970 GTTAAAAAGA
*
8941980 CATAATGTATCAATACATTGAAGAATATATCGATACATT
1 CATAATGTATCAATACATTGAAAAATATATCGATACATT
* * *
8942019 CATACATGTATCGATATATTGAAAAATGTATCGATACATT
1 CATA-ATGTATCAATACATTGAAAAATATATCGATACATT
8942059 TGGGTAAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
39 4 0.11
40 31 0.89
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (39 bp):
CATAATGTATCAATACATTGAAAAATATATCGATACATT
Found at i:8942831 original size:29 final size:29
Alignment explanation
Indices: 8942617--8944869 Score: 1664
Period size: 28 Copynumber: 78.2 Consensus size: 29
8942607 TTTTCAAAAA
*
8942617 AAAAGGGTGCCACTAACTTATGTGGGCTTTG
1 AAAAGGGTGCCACTGAC-T-TGTGGGCTTTG
* *
8942648 AAAAGAGTTGCCACCGACTCGTGTGGGCTTTG
1 AAAAG-GGTGCCACTGACT--TGTGGGCTTTG
* * *
8942680 AAAAGAGTTACCACT-AGCTTGTGTGCTTT-
1 AAAAG-GGTGCCACTGA-CTTGTGGGCTTTG
8942709 AAAAGGGTGCCACTGACTTGTGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
* *
8942738 -GAAGGGTGCCACTGATTTGTGTGGGCTTTG
1 AAAAGGGTGCCACTGA-CT-TGTGGGCTTTG
* *
8942768 AAAAGAGTTGCTACTGACTTGTGTGGGCTTTG
1 AAAAG-GGTGCCACTGAC-T-TGTGGGCTTTG
*
8942800 AAAAGAGTGCCACTGACTTGTGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
** *
8942829 AAAAGATTGCCACTGACTTGTGGGTTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
*
8942858 AAAA-GGTGCCATTGACTTGTGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
*
8942886 -AAAGAGGTGCCACTGACTTGTGGGCTCTG
1 AAAAG-GGTGCCACTGACTTGTGGGCTTTG
* *
8942915 AAAGGGGTGCCACT-ATCTTGTAGGCTTTG
1 AAAAGGGTGCCACTGA-CTTGTGGGCTTTG
* * *
8942944 AAAAGAGTGCCACTAACTTGCGGGCTTT-
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
8942972 AAAAGGGTGCCACTGACTTGCGTGGGCTTTG
1 AAAAGGGTGCCACTGACTT--GTGGGCTTTG
*
8943003 AAAGGGGTGCCACTGACTTGTGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
** * *
8943032 AAGGGGGTGCCACTGACTTATGGGCTTCG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
*
8943061 -AAAGGGTGCCA-TGGACTTGTAGGCTTTG
1 AAAAGGGTGCCACT-GACTTGTGGGCTTTG
*
8943089 -AAAGGAGTTGCCACCGACTCGTGTGGGCTTTG
1 AAAAGG-G-TGCCACTGACT--TGTGGGCTTTG
* * * *
8943121 AAAATGTTGCCACCGACTCGTGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
*
8943150 -AAAGGATGCCACTGACTTGTGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
*
8943178 AAAAGGGTTGCCACCGACTCATGTGGGCTTTG
1 AAAAGGG-TGCCACTGACT--TGTGGGCTTTG
*
8943210 AAAAGAGTGCCACTGACTTGTGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
8943239 -AAAGGGTGCCACTGACTTGTGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
* * *
8943267 AAAGGGGTTGCCACCGACTTGTGTGGGCTTTC
1 AAAAGGG-TGCCACTGAC-T-TGTGGGCTTTG
* *
8943299 AAATGGGTTGCCACCGACTTATGTGGGCTTTG
1 AAAAGGG-TGCCACTGAC-T-TGTGGGCTTTG
* *
8943331 AAATAGGTTGCCACCGACTTGTGTGGGCTTT-
1 AAA-AGGGTGCCACTGAC-T-TGTGGGCTTTG
*
8943362 AAAAGGGTGCCACTGACTTGTGGGC-TTA
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
* ** * **
8943390 AAAAGGATGCCACAAAGTTGTGAAC-TT-
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
* * * *
8943417 AAAAGGGTACCACGGAGTTGTGGACTTT-
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
* * * * * *
8943445 AAACGGATGCCACGGAGTTGTAGACTTT-
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
* *
8943473 -AAAGGGTGCCA-TGGAGTTGTGGACTTT-
1 AAAAGGGTGCCACT-GACTTGTGGGCTTTG
* * *
8943500 -AAAGGGTGCCACGGAGTTGTGGAC-TT-
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
* * * * *
8943526 AAAACGATGCCACGGAGTTGTGGACTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
* * *
8943555 -AAAGGGTGCCACGGAGTTGTGGACTTT-
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
* *
8943582 -AAAGGGTGCCAC-GAAGTTGTGGACTTT-
1 AAAAGGGTGCCACTG-ACTTGTGGGCTTTG
* * *
8943609 AAAAGGGTGCCACGGAGTTGTGGACTTT-
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
* *
8943637 -AAAGGGTGCCAC-GAAGTTGTGGAC-TT-
1 AAAAGGGTGCCACTG-ACTTGTGGGCTTTG
* * * * *
8943663 AAAACGATGCCACAGAGTTGTGGACTTT-
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
* *
8943691 AAAAGGGTGCCA-TGGAGTTGTGGACTTT-
1 AAAAGGGTGCCACT-GACTTGTGGGCTTTG
* * * *
8943719 -AAAGGGTACCA-TGGAGTTATGGAC-TT-
1 AAAAGGGTGCCACT-GACTTGTGGGCTTTG
* * * * *
8943745 AAAACGATGCCACGGAATTGTGGACTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
* *
8943774 -GAAGGGTGCCACTGATTTGTGTGGGCTTTG
1 AAAAGGGTGCCACTGA-CT-TGTGGGCTTTG
* *
8943804 AAAAGAGTTGCTACTGACTTGTGTGGACTTTG
1 AAAAG-GGTGCCACTGACTTGTG-GG-CTTTG
*
8943836 AAAAGAGTGCCACTGACTTGTGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
* *
8943865 AAAAGAGTGCCACTGACTTGTGGGTTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
8943894 AAAA-GGTGCCACTGACTTGTGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
*
8943922 -AAAGAGGTGCCACT-ATCTTGTGAGCTTTG
1 AAAAG-GGTGCCACTGA-CTTGTGGGCTTTG
**
8943951 AAAATAGTGCCACT-ATCTTGTGGGCTTT-
1 AAAAGGGTGCCACTGA-CTTGTGGGCTTTG
8943979 AAAAGGGTGCCACTGACTTGCGTGGGCTTTG
1 AAAAGGGTGCCACTGACTT--GTGGGCTTTG
* *
8944010 AAAGGGGTGTCACTGACTTGTGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
8944039 AAAAGGGTGCCACTGACTTGCGTGGGCTTTG
1 AAAAGGGTGCCACTGACTT--GTGGGCTTTG
*
8944070 AAAGGGGTGCCACTGACTTGTGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
8944099 AAAAGGGTGCCACTGACTTGTGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
* *
8944128 -AAAGGGTGCCACGGACTTGTTGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
*
8944156 -AAAGGAGTTGCCACCGACTCGTGTGGGCTTTG
1 AAAAGG-G-TGCCACTGACT--TGTGGGCTTTG
* * * *
8944188 AAAATGTTGCCACCGACTCGTGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
*
8944217 -AAAGGATGCCACTGACTTGTGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
* *
8944245 AAAAGGGTTGCCACCGACTCGTGTGGGTTTTG
1 AAAAGGG-TGCCACTGACT--TGTGGGCTTTG
*
8944277 AAAAGAGTGCCACTGACTTGTGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
8944306 -AAAGGGTGCCACTGACTTGTGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
8944334 -AAAGGGTGCCACTGACTTGTGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
*
8944362 -AAAGGATGCCACTGACTTGTGGGCTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
* * * *
8944390 AAAGGGGTTACCACCGACTTGTGTGGGCTTTC
1 AAAAGGG-TGCCACTGAC-T-TGTGGGCTTTG
* * *
8944422 AAATGGGTTGCCACCGACTTGTGTGGGCTTTC
1 AAAAGGG-TGCCACTGAC-T-TGTGGGCTTTG
* *
8944454 AAATGGGTTGCCACCGACTTGTGTGGGCTTT-
1 AAAAGGG-TGCCACTGAC-T-TGTGGGCTTTG
* * * *
8944485 -----CGTGCCACGGAGTTGTGGAC-TT-
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
* * * * *
8944507 AAAACGATGCCACGGAGTTGTGGACTTTG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
* * *
8944536 -AAAGGGTGCCACGGAGTTGTGGACTTT-
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
* *
8944563 -AAAGGGTGCCACGGAGTTGTGGAG-TTT-
1 AAAAGGGTGCCACTGACTTGTGG-GCTTTG
* * * *
8944590 AAAATGGTGCCACGGAGTTGT-GGATTT-
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
* * * * *
8944617 TAAAGGGTGCCACGGAGTTATGGAC-TT-
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
* * * * *
8944644 AAAACGATGCCACGGAGTTGTGGACTTT-
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
* *
8944672 AAAAGGGTGCCA-TGGAGTTGTGGACTTT-
1 AAAAGGGTGCCACT-GACTTGTGGGCTTTG
* * * * *
8944700 -AAAGGGTACCACGGAGTTATGGAC-TT-
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
* * * * *
8944726 AAAACGATGCCACGGAATTGTGGACTTT-
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
* * *
8944754 AAAAGGGTGCCACGGAGTTGTGGACTTT-
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
* * * *
8944782 AAAAGGATGCCACGGAGTTGTGGACTTT-
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
* * * *
8944810 AAAAGGATGCCACAGAGTTGTGGAC-TT-
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
* * * *
8944837 AAAAGGATGCCACAGAGTTGTGGACTTT-
1 AAAAGGGTGCCACTGACTTGTGGGCTTTG
8944865 AAAAG
1 AAAAG
8944870 AAAATGCCAC
Statistics
Matches: 1926, Mismatches: 197, Indels: 201
0.83 0.08 0.09
Matches are distributed among these distances:
22 2 0.00
23 6 0.00
24 1 0.00
25 8 0.00
26 12 0.01
27 355 0.18
28 626 0.33
29 359 0.19
30 129 0.07
31 149 0.08
32 269 0.14
33 10 0.01
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (29 bp):
AAAAGGGTGCCACTGACTTGTGGGCTTTG
Found at i:8943145 original size:89 final size:87
Alignment explanation
Indices: 8942618--8944476 Score: 1357
Period size: 89 Copynumber: 21.2 Consensus size: 87
8942608 TTTCAAAAAA
* *
8942618 AAAGGGTGCCACTAACTTATGTGGGCTTTGAAAAGAGTTGCCACCGACTCGTGTGGGCTTTGAAA
1 AAAGGGTGCCACTGAC-T-TGTGGGCTTTG-AAAGGGTTGCCACCGACTCGTGTGGGCTTTGAAA
* * *
8942683 AGAGTTACCACT-AGCTTGTGTGCTTTA
63 AG-G-TGCCACTGA-CTTGTGGGCTTTG
* * * *
8942710 AAAGGGTGCCACTGACTTGTGGGCTTTGGAAGGG-TGCCACTGATTTGTGTGGGCTTTGAAAAGA
1 AAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTTGCCACCGACTCGTGTGGGCTTTGAAAAG-
*
8942774 GTTGCTACTGACTTGTGTGGGCTTTG
65 G-TGCCACTGAC-T-TGTGGGCTTTG
* * * * *
8942800 AAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGATTGCCACTGACT--TGTGGGTTTTGAAAAG
1 -AAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTTGCCACCGACTCGTGTGGGCTTTGAAAAG
*
8942863 GTGCCATTGACTTGTGGGCTTTG
65 GTGCCACTGACTTGTGGGCTTTG
* * * * *
8942886 AAAGAGGTGCCACTGACTTGTGGGCTCTGAAAGGGGTGCCA-CTA-TCTTGTAGGCTTTGAAAAG
1 AAAG-GGTGCCACTGACTTGTGGGCTTTGAAAGGGTTGCCACCGACTCGTGTGGGCTTTGAAAAG
* * *
8942949 AGTGCCACTAACTTGCGGGCTTTA
65 -GTGCCACTGACTTGTGGGCTTTG
* * *
8942973 AAAGGGTGCCACTGACTTGCGTGGGCTTTGAAAGGGGTGCCACTGACT--TGTGGGCTTTGAAGG
1 AAAGGGTGCCACTGACTT--GTGGGCTTTGAAAGGGTTGCCACCGACTCGTGTGGGCTTTGAA-A
* * *
8943036 GGGTGCCACTGACTTATGGGCTTCG
63 AGGTGCCACTGACTTGTGGGCTTTG
*
8943061 AAAGGGTGCCA-TGGACTTGTAGGCTTTGAAAGGAGTTGCCACCGACTCGTGTGGGCTTTGAAAA
1 AAAGGGTGCCACT-GACTTGTGGGCTTTGAAAGG-GTTGCCACCGACTCGTGTGGGCTTTGAAAA
* * *
8943125 TGTTGCCACCGACTCGTGGGCTTTG
64 -GGTGCCACTGACTTGTGGGCTTTG
* *
8943150 AAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGGTTGCCACCGACTCATGTGGGCTTTGAAAAG
1 AAAGGGTGCCACTGACTTGTGGGCTTTG-AAAGGGTTGCCACCGACTCGTGTGGGCTTTGAAAAG
8943215 AGTGCCACTGACTTGTGGGCTTTG
65 -GTGCCACTGACTTGTGGGCTTTG
* * *
8943239 AAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGGTTGCCACCGACTTGTGTGGGCTTTCAAATG
1 AAAGGGTGCCACTGACTTGTGGGCTTTGAAA-GGGTTGCCACCGACTCGTGTGGGCTTTGAAA-A
*
8943304 GGTTGCCACCGACTTATGTGGGCTTTG
64 GG-TGCCACTGAC-T-TGTGGGCTTTG
* * * * *
8943331 AAATAGGTTGCCACCGACTTGTGTGGGCTTTAAAAGGG-TGCCACTGACT--TGTGGGC-TTAAA
1 -AA-AGGGTGCCACTGAC-T-TGTGGGCTTTGAAAGGGTTGCCACCGACTCGTGTGGGCTTTGAA
** * ** *
8943392 AAGGATGCCACAAAGTTGTGAAC-TTA
62 AAGG-TGCCACTGACTTGTGGGCTTTG
* * * * * * * * * * *
8943418 AAAGGGTACCACGGAGTTGTGGACTTT-AAACGGATGCCACGGAGT--TGTAGACTTT-AAAGGG
1 AAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTTGCCACCGACTCGTGTGGGCTTTGAAAAGG
* *
8943479 TGCCA-TGGAGTTGTGGACTTT-
66 TGCCACT-GACTTGTGGGCTTTG
* * * ** * * * * *
8943500 AAAGGGTGCCACGGAGTTGTGGAC-TT-AAAACGATGCCACGGAGT--TGTGGACTTTGAAAGGG
1 AAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTTGCCACCGACTCGTGTGGGCTTTGAAAAGG
* * *
8943561 TGCCACGGAGTTGTGGACTTT-
66 TGCCACTGACTTGTGGGCTTTG
* * * * * * *
8943582 AAAGGGTGCCAC-GAAGTTGTGGACTTTAAAAGGG-TGCCACGGAGT--TGTGGACTTT-AAAGG
1 AAAGGGTGCCACTG-ACTTGTGGGCTTTGAAAGGGTTGCCACCGACTCGTGTGGGCTTTGAAAAG
* * *
8943642 GTGCCAC-GAAGTTGTGGAC-TTA
65 GTGCCACTG-ACTTGTGGGCTTTG
* * * * * * ** * * *
8943664 AAACGATGCCACAGAGTTGTGGACTTTAAAAGGG-TGCCATGGAGT--TGTGGACTTT-AAAGGG
1 AAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTTGCCACCGACTCGTGTGGGCTTTGAAAAGG
* * * * *
8943725 TACCA-TGGAGTTATGGAC-TTA
66 TGCCACT-GACTTGTGGGCTTTG
* * * * * * * * *
8943746 AAACGATGCCACGGAATTGTGGACTTTGGAAGGG-TGCCACTGATTTGTGTGGGCTTTGAAAAGA
1 AAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTTGCCACCGACTCGTGTGGGCTTTGAAAAG-
*
8943810 GTTGCTACTGACTTGTGTGGACTTTG
65 G-TGCCACTGACTTGTG-GG-CTTTG
* * * *
8943836 AAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAG-TGCCACTGACT--TGTGGGTTTTGAAAA
1 -AAAGGGTGCCACTGACTTGTGGGCTTTG-AAAGGGTTGCCACCGACTCGTGTGGGCTTTGAAAA
8943898 GGTGCCACTGACTTGTGGGCTTTG
64 GGTGCCACTGACTTGTGGGCTTTG
* ** * *
8943922 AAAGAGGTGCCACT-ATCTTGTGAGCTTTGAAAATAG-TGCCA-CTA-TCTTGTGGGCTTT-AAA
1 AAAG-GGTGCCACTGA-CTTGTGGGCTTTG-AAAGGGTTGCCACCGACTCGTGTGGGCTTTGAAA
8943982 AGGGTGCCACTGACTTGCGTGGGCTTTG
63 A-GGTGCCACTGACTT--GTGGGCTTTG
* * * *
8944010 AAAGGGGTGTCACTGACTTGTGGGCTTTGAAAAGGG-TGCCACTGACTTGCGTGGGCTTTGAAAG
1 AAA-GGGTGCCACTGACTTGTGGGCTTTG-AAAGGGTTGCCACCGACTCGTGTGGGCTTTGAAA-
*
8944074 GGGTGCCACTGACTTGTGGGCTTTG
63 AGGTGCCACTGACTTGTGGGCTTTG
* *
8944099 AAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGG-TGCCACGGACT--TGTTGGCTTTGAAAGG
1 -AAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTTGCCACCGACTCGTGTGGGCTTTGAAA--
* *
8944161 AGTTGCCACCGACTCGTGTGGGCTTTG
63 AGGTGCCACTGACT--TGTGGGCTTTG
* * * * * *
8944188 AAAATGTTGCCACCGACTCGTGGGCTTTGAAA-GGATGCCACTGACT--TGTGGGCTTTGAAAAG
1 -AAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTTGCCACCGACTCGTGTGGGCTTTGAAAA-
* *
8944250 GGTTGCCACCGACTCGTGTGGGTTTTG
64 GG-TGCCACTGACT--TGTGGGCTTTG
* * *
8944277 AAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGG-TGCCACTGACT--TGTGGGCTTTGAAAGG
1 -AAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTTGCCACCGACTCGTGTGGGCTTTGAAAAG
8944339 GTGCCACTGACTTGTGGGCTTTG
65 GTGCCACTGACTTGTGGGCTTTG
* * * * *
8944362 AAAGGATGCCACTGACTTGTGGGCTTTGAAAGGGGTTACCACCGACTTGTGTGGGCTTTCAAATG
1 AAAGGGTGCCACTGACTTGTGGGCTTTGAAA-GGGTTGCCACCGACTCGTGTGGGCTTTGAAA-A
* *
8944427 GGTTGCCACCGACTTGTGTGGGCTTTC
64 GG-TGCCACTGAC-T-TGTGGGCTTTG
*
8944454 AAATGGGTTGCCACCGACTTGTG
1 AAA-GGG-TGCCACTGACTTGTG
8944477 TGGGCTTTCG
Statistics
Matches: 1503, Mismatches: 177, Indels: 172
0.81 0.10 0.09
Matches are distributed among these distances:
81 31 0.02
82 221 0.15
83 55 0.04
84 47 0.03
85 42 0.03
86 167 0.11
87 72 0.05
88 212 0.14
89 350 0.23
90 102 0.07
91 77 0.05
92 70 0.05
93 4 0.00
94 36 0.02
95 4 0.00
96 13 0.01
ACGTcount: A:0.22, C:0.17, G:0.32, T:0.28
Consensus pattern (87 bp):
AAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTTGCCACCGACTCGTGTGGGCTTTGAAAAGG
TGCCACTGACTTGTGGGCTTTG
Found at i:8943505 original size:82 final size:83
Alignment explanation
Indices: 8942789--8944869 Score: 1040
Period size: 82 Copynumber: 24.2 Consensus size: 83
8942779 TACTGACTTG
* * * * * * * * **
8942789 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGATTGCCACTGACTTGTGGGT
1 TGTGGACTTTG-AAAGGGTGCCACGGAGTTGTGGACTTT-AAAGGA-TGCCACGGAGTTGTGGAC
* ** *
8942854 TTTGAAAAGGTGCCATTGACT
63 TTTGAAAGGGTGCCACGGAGT
* * * * * * * *
8942875 TGTGGGCTTTGAAAGAGGTGCCACTGACTTGTGGGCTCTGAAAGGGGTGCCAC-TATCTTGTAGG
1 TGTGGACTTTGAAAG-GGTGCCACGGAGTTGTGGACT-TTAAA-GGATGCCACGGA-GTTGT-GG
* ** *
8942939 -CTTTGAAAAGAGTGCCACTAACT
61 ACTTTG-AAAGGGTGCCACGGAGT
* * * * * * * * * *
8942962 TGCGGGCTTTAAAAGGGTGCCACTGACTTGCGTGGGCTTTGAAAGGGGTGCCACTGACTTGTGGG
1 TGTGGACTTTGAAAGGGTGCCACGGAGTT--GTGGACTTT-AAA-GGATGCCACGGAGTTGTGGA
* * *
8943027 CTTTGAAGGGGGTGCCACTGACT
62 CTTTGAA-AGGGTGCCACGGAGT
* * * * * * *
8943050 TATGGGCTTCGAAAGGGTGCCATGGACTTGTAGG-CTTTGAAAGGAGTTGCCACCGACTCGTGTG
1 TGTGGACTTTGAAAGGGTGCCACGGAGTTGT-GGACTTT-AAAGGA--TGCCACGGAGT--TGTG
* * * * *
8943114 GGCTTTGAAAATGTTGCCACCGACT
60 GACTTTG-AAAGGGTGCCACGGAGT
* * * * * * * * *
8943139 CGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGGTTGCCACCGACTCATGTGG
1 TGTGGACTTTGAAAGGGTGCCACGGAGTTGTGGACTTT--AAA-GGATGCCACGGAGT--TGTGG
* * * *
8943204 GCTTTGAAAAGAGTGCCACTGACT
61 ACTTTG-AAAGGGTGCCACGGAGT
* * * * * * *
8943228 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGGTTGCCACCGACTTGTGTGG
1 TGTGGACTTTGAAAGGGTGCCACGGAGTTGTGGACTTT-AAA--GGATGCCACGGA-GT-TGTGG
* * * *
8943293 GCTTTCAAATGGGTTGCCACCGACTT
61 ACTTTGAAA-GGG-TGCCACGGA-GT
* * * * * * * *
8943319 ATGTGGGCTTTGAAATAGGTTGCCACCGACTTGTGTGGGCTTTAAAAGGGTGCCACTGACTTGTG
1 -TGTGGACTTTG-AA-AGGGTGCCACGGA-GT-TGTGGACTTT-AAAGGATGCCACGGAGTTGTG
* ** * **
8943384 GGCTTAAAAAGGATGCCACAAAGT
60 GACTTTGAAAGGGTGCCACGGAGT
* * * *
8943408 TGTGAAC-TTAAAAGGGTACCACGGAGTTGTGGACTTTAAACGGATGCCACGGAGTTGTAGACTT
1 TGTGGACTTTGAAAGGGTGCCACGGAGTTGTGGACTTTAAA-GGATGCCACGGAGTTGTGGACTT
*
8943472 T-AAAGGGTGCCATGGAGT
65 TGAAAGGGTGCCACGGAGT
* *
8943490 TGTGGACTTT-AAAGGGTGCCACGGAGTTGTGGACTTAAAACGATGCCACGGAGTTGTGGACTTT
1 TGTGGACTTTGAAAGGGTGCCACGGAGTTGTGGACTTTAAAGGATGCCACGGAGTTGTGGACTTT
8943554 GAAAGGGTGCCACGGAGT
66 GAAAGGGTGCCACGGAGT
* *
8943572 TGTGGACTTT-AAAGGGTGCCACGAAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTT
1 TGTGGACTTTGAAAGGGTGCCACGGAGTTGTGGACTTT-AAAGGATGCCACGGAGTTGTGGACTT
*
8943636 T-AAAGGGTGCCACGAAGT
65 TGAAAGGGTGCCACGGAGT
* * * * * *
8943654 TGTGGAC-TTAAAACGATGCCACAGAGTTGTGGACTTTAAAAGGGTGCCATGGAGTTGTGGACTT
1 TGTGGACTTTGAAAGGGTGCCACGGAGTTGTGGACTTT-AAAGGATGCCACGGAGTTGTGGACTT
* *
8943718 T-AAAGGGTACCATGGAGT
65 TGAAAGGGTGCCACGGAGT
* * * * * * * * * *
8943736 TATGGAC-TTAAAACGATGCCACGGAATTGTGGACTTTGGAAGGGTGCCACTGATTTGTGTGGGC
1 TGTGGACTTTGAAAGGGTGCCACGGAGTTGTGGACTTT-AAAGGATGCCACGGA-GT-TGTGGAC
* * * *
8943800 TTTGAAAAGAGTTGCTACTGACTT
63 TTTG-AAAG-GGTGCCACGGA-GT
* * * * * * * *
8943824 GTGTGGACTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGG
1 -TGTGGACTTTG-AAAGGGTGCCACGGAGTTGTGGACTTT-AAAGGA-TGCCACGGAGTTGTGGA
* * * *
8943889 TTTTGAAAAGGTGCCACTGACT
62 CTTTGAAAGGGTGCCACGGAGT
* * * ** * *
8943911 TGTGGGCTTTGAAAGAGGTGCCAC-TATCTTGT-GAGCTTTGAAAATAGTGCCAC-TATCTTGTG
1 TGTGGACTTTGAAAG-GGTGCCACGGA-GTTGTGGA-CTTT-AAAGGA-TGCCACGGA-GTTGTG
* * * *
8943973 GGCTTTAAAAGGGTGCCACTGACT
60 GACTTTGAAAGGGTGCCACGGAGT
* * * * * * * *
8943997 TGCGTGGGCTTTGAAAGGGGTGTCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTGACTTGCGT
1 T--GTGGACTTTGAAA-GGGTGCCACGGAGTTGTGGACTTT--AAAGGATGCCACGGAGTT--GT
* * *
8944062 GGGCTTTGAAAGGGGTGCCACTGACT
59 GGACTTTGAAA-GGGTGCCACGGAGT
* * * * * *
8944088 TGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACGGACTTGTTGG-C
1 TGTGGACTTTG-AAAGGGTGCCACGGAGTTGTGGACTTT-AAAGGATGCCACGGAGTTG-TGGAC
* *
8944152 TTTGAAAGGAGTTGCCACCGACT
63 TTTGAAAGG-G-TGCCACGGAGT
* * * * * * * * * *
8944175 CGTGTGGGCTTTGAAAATGTTGCCACCGACTCGTGGGCTTTGAAAGGATGCCACTGACTTGTGGG
1 --TGTGGACTTTG-AAAGGGTGCCACGGAGTTGTGGACTTT-AAAGGATGCCACGGAGTTGTGGA
* *
8944240 CTTTGAAAAGGGTTGCCACCGACT
62 CTTTG-AAAGGG-TGCCACGGAGT
** * * * * * * * *
8944264 CGTGTGGGTTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGG
1 --TGTGGACTTTG-AAAGGGTGCCACGGAGTTGTGGACTTT-AAAGGATGCCACGGAGTTGTGGA
* *
8944329 CTTTGAAAGGGTGCCACTGACT
62 CTTTGAAAGGGTGCCACGGAGT
* * * * * * * * *
8944351 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGGGTTACCACCGACTTGTGTGG
1 TGTGGACTTTGAAAGGGTGCCACGGAGTTGTGGACTTT-AAA--GGATGCCACGGA-GT-TGTGG
* * * *
8944416 GCTTTCAAATGGGTTGCCACCGACTT
61 ACTTTGAAA-GGG-TGCCACGGA-GT
* * * * * *
8944442 GTGTGGGCTTTCAAATGGGTTGCCACCGACTTGTGTGGGCTTT---CG-TGCCACGGAGTTGTGG
1 -TGTGGACTTTGAAA-GGG-TGCCACGGA-GT-TGTGGACTTTAAAGGATGCCACGGAGTTGTGG
* * *
8944503 AC-TTAAAACGATGCCACGGAGT
61 ACTTTGAAAGGGTGCCACGGAGT
* *
8944525 TGTGGACTTTGAAAGGGTGCCACGGAGTTGTGGACTTTAAAGGGTGCCACGGAGTTGTGGAGTTT
1 TGTGGACTTTGAAAGGGTGCCACGGAGTTGTGGACTTTAAAGGATGCCACGGAGTTGTGGACTTT
* *
8944590 AAAATGGTGCCACGGAGT
66 GAAAGGGTGCCACGGAGT
* * * *
8944608 TGTGGA-TTTTAAAGGGTGCCACGGAGTTATGGACTTAAAACGATGCCACGGAGTTGTGGACTTT
1 TGTGGACTTTGAAAGGGTGCCACGGAGTTGTGGACTTTAAAGGATGCCACGGAGTTGTGGACTTT
* *
8944672 AAAAGGGTGCCATGGAGT
66 GAAAGGGTGCCACGGAGT
* * * * *
8944690 TGTGGACTTT-AAAGGGTACCACGGAGTTATGGACTTAAAACGATGCCACGGAATTGTGGACTTT
1 TGTGGACTTTGAAAGGGTGCCACGGAGTTGTGGACTTTAAAGGATGCCACGGAGTTGTGGACTTT
*
8944754 AAAAGGGTGCCACGGAGT
66 GAAAGGGTGCCACGGAGT
* * *
8944772 TGTGGACTTTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGATGCCACAGAGTTGTGGAC-T
1 TGTGGACTTTGAAAGGGTGCCACGGAGTTGTGGACTTT-AAAGGATGCCACGGAGTTGTGGACTT
* * *
8944836 TAAAAGGATGCCACAGAGT
65 TGAAAGGGTGCCACGGAGT
*
8944855 TGTGGACTTTAAAAG
1 TGTGGACTTTGAAAG
8944870 AAAATGCCAC
Statistics
Matches: 1685, Mismatches: 222, Indels: 179
0.81 0.11 0.09
Matches are distributed among these distances:
78 9 0.01
79 1 0.00
80 8 0.00
81 28 0.02
82 416 0.25
83 139 0.08
84 68 0.04
85 37 0.02
86 170 0.10
87 86 0.05
88 166 0.10
89 344 0.20
90 62 0.04
91 47 0.03
92 45 0.03
93 5 0.00
94 29 0.02
95 2 0.00
96 23 0.01
ACGTcount: A:0.23, C:0.17, G:0.33, T:0.27
Consensus pattern (83 bp):
TGTGGACTTTGAAAGGGTGCCACGGAGTTGTGGACTTTAAAGGATGCCACGGAGTTGTGGACTTT
GAAAGGGTGCCACGGAGT
Found at i:8944868 original size:55 final size:56
Alignment explanation
Indices: 8942705--8944869 Score: 1159
Period size: 55 Copynumber: 37.7 Consensus size: 56
8942695 AGCTTGTGTG
* * * ** * * *
8942705 CTTTAAAAGGGTGCCACTGACTTGTGGGCTTTGGAAGGGTGCCACTGATTTGTGTGGG
1 CTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGA-GT-TGTGGA
* * * * * * * * *
8942763 CTTTGAAAAGAGTTGCTACTGACTTGTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGG
1 CTTT-AAAAG-GGTGCCACGGA-GT-TGTGGACTTT-AAAAGGGTGCCACGGAGTTGTGGA
** * * ** ** * *
8942824 CTTTGAAAAGATTGCCACTGACTTGTGGGTTTTGAAAA-GGTGCCATTGACTTGTGGG
1 CTTT-AAAAGGGTGCCACGGAGTTGTGGACTTT-AAAAGGGTGCCACGGAGTTGTGGA
* * * * * * * *
8942881 CTTTGAAAGAGGTGCCACTGACTTGTGGGCTCTGAAAGGGGTGCCAC-TATCTTGTAGG-
1 CTTTAAAAG-GGTGCCACGGAGTTGTGGACT-TTAAAAGGGTGCCACGGA-GTTGT-GGA
* ** * * * * * *
8942939 CTTTGAAAAGAGTGCCACTAACTTGCGGGCTTTAAAAGGGTGCCACTGACTTGCGTGGG
1 CTTT-AAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTT--GTGGA
* * * * ** * * * *
8942998 CTTTGAAAGGGGTGCCACTGACTTGTGGGCTTTGAAGGGGGTGCCACTGACTTATGGG
1 CTTT-AAAAGGGTGCCACGGAGTTGTGGACTTT-AAAAGGGTGCCACGGAGTTGTGGA
** * * * * * *
8943056 CTTCGAAAGGGTGCCATGGACTTGTAGG-CTTTGAAAGGAGTTGCCACCGACTCGTGTGGG
1 CTTTAAAAGGGTGCCACGGAGTTGT-GGACTTTAAAAGG-G-TGCCACGGAGT--TGTGGA
* * * * * * * * * * *
8943116 CTTTGAAAATGTTGCCACCGACTCGTGGGCTTTGAAAGGATGCCACTGACTTGTGGG
1 CTTT-AAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGA
* * * * * * *
8943173 CTTTGAAAAGGGTTGCCACCGACTCATGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGG
1 CTTT-AAAAGGG-TGCCACGGAGT--TGTGGACTTT-AAAAGGGTGCCACGGAGTTGTGGA
* * * * * * * *
8943234 CTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGGTTGCCACCGACTTGTGTGGG
1 CTTTAAAAGGGTGCCACGGAGTTGTGGACTTT-AAAAGGG-TGCCACGGA-GT-TGTGGA
* * * * * * * *
8943294 CTTTCAAATGGGTTGCCACCGACTTATGTGGGCTTTGAAATAGGTTGCCACCGACTTGTGTGGG
1 CTTT-AAAAGGG-TGCCACGGA-GT-TGTGGACTTT-AAA-AGGGTGCCACGGA-GT-TGTGGA
* * * * * ** *
8943358 CTTTAAAAGGGTGCCACTGACTTGTGGGCTTAAAAAGGATGCCACAAAGTTGTGAA
1 CTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGA
* * * *
8943414 C-TTAAAAGGGTACCACGGAGTTGTGGACTTTAAACGGATGCCACGGAGTTGTAGA
1 CTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGA
*
8943469 CTTT-AAAGGGTGCCATGGAGTTGTGGACTTT-AAAGGGTGCCACGGAGTTGTGGA
1 CTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGA
* * *
8943523 C-TTAAAACGATGCCACGGAGTTGTGGACTTTGAAAGGGTGCCACGGAGTTGTGGA
1 CTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGA
*
8943578 CTTT-AAAGGGTGCCACGAAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGA
1 CTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGA
* * * *
8943633 CTTT-AAAGGGTGCCACGAAGTTGTGGAC-TTAAAACGATGCCACAGAGTTGTGGA
1 CTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGA
* * * *
8943687 CTTTAAAAGGGTGCCATGGAGTTGTGGACTTT-AAAGGGTACCATGGAGTTATGGA
1 CTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGA
* * * ** * * *
8943742 C-TTAAAACGATGCCACGGAATTGTGGACTTTGGAAGGGTGCCACTGATTTGTGTGGG
1 CTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGA-GT-TGTGGA
* * * * * * * *
8943799 CTTTGAAAAGAGTTGCTACTGACTTGTGTGGACTTTGAAAAGAGTGCCACTGACTTGTGGG
1 CTTT-AAAAG-GGTGCCACGGA-GT-TGTGGACTTT-AAAAGGGTGCCACGGAGTTGTGGA
* * * ** * * *
8943860 CTTTGAAAAGAGTGCCACTGACTTGTGGGTTTTGAAAA-GGTGCCACTGACTTGTGGG
1 CTTT-AAAAGGGTGCCACGGAGTTGTGGACTTT-AAAAGGGTGCCACGGAGTTGTGGA
* * * ** * * *
8943917 CTTTGAAAGAGGTGCCAC-TATCTTGT-GAGCTTTGAAAATAGTGCCAC-TATCTTGTGGG
1 CTTTAAAAG-GGTGCCACGGA-GTTGTGGA-CTTT-AAAAGGGTGCCACGGA-GTTGTGGA
* * * * * * * *
8943975 CTTTAAAAGGGTGCCACTGACTTGCGTGGGCTTTGAAAGGGGTGTCACTGACTTGTGGG
1 CTTTAAAAGGGTGCCACGGAGTT--GTGGACTTT-AAAAGGGTGCCACGGAGTTGTGGA
* * * * * * *
8944034 CTTTGAAAAGGGTGCCACTGACTTGCGTGGGCTTTGAAAGGGGTGCCACTGACTTGTGGG
1 CTTT-AAAAGGGTGCCACGGAGTT--GTGGACTTT-AAAAGGGTGCCACGGAGTTGTGGA
* * * * *
8944094 CTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACGGACTTGTTGG-
1 CTTT-AAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTG-TGGA
* * * * * * * * * *
8944151 CTTTGAAAGGAGTTGCCACCGACTCGTGTGGGCTTTGAAAATGTTGCCACCGACTCGTGGG
1 CTTTAAAAGG-G-TGCCACGGAGT--TGTGGACTTT-AAAAGGGTGCCACGGAGTTGTGGA
* * * * * * * *
8944212 CTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGGTTGCCACCGACTCGTGTGGG
1 CTTTAAAAGGGTGCCACGGAGTTGTGGACTTT-AAAAGGG-TGCCACGGAGT--TGTGGA
* * * * * * * * *
8944272 TTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGG
1 CTTT-AAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGA
* * * * * * * * *
8944329 CTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGG
1 CTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGA
* * * * * * * * *
8944385 CTTTGAAAGGGGTTACCACCGACTTGTGTGGGCTTTCAAATGGGTTGCCACCGACTTGTGTGGG
1 CTTT-AAAAGGG-TGCCACGGA-GT-TGTGGACTTT-AAAAGGG-TGCCACGGA-GT-TGTGGA
* * * * *
8944449 CTTTCAAATGGGTTGCCACCGACTTGTGTGGGCTTT-----CGTGCCACGGAGTTGTGGA
1 CTTT-AAAAGGG-TGCCACGGA-GT-TGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGA
* * *
8944504 C-TTAAAACGATGCCACGGAGTTGTGGACTTTGAAAGGGTGCCACGGAGTTGTGGA
1 CTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGA
* *
8944559 CTTT-AAAGGGTGCCACGGAGTTGTGGAGTTTAAAATGGTGCCACGGAGTTGTGGA
1 CTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGA
* * * *
8944614 -TTTTAAAGGGTGCCACGGAGTTATGGAC-TTAAAACGATGCCACGGAGTTGTGGA
1 CTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGA
* * *
8944668 CTTTAAAAGGGTGCCATGGAGTTGTGGACTTT-AAAGGGTACCACGGAGTTATGGA
1 CTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGA
* * *
8944723 C-TTAAAACGATGCCACGGAATTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGA
1 CTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGA
* * *
8944778 CTTTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGATGCCACAGAGTTGTGGA
1 CTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGA
* *
8944834 C-TTAAAAGGATGCCACAGAGTTGTGGACTTTAAAAG
1 CTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAG
8944870 AAAATGCCAC
Statistics
Matches: 1782, Mismatches: 234, Indels: 185
0.81 0.11 0.08
Matches are distributed among these distances:
50 9 0.01
51 1 0.00
52 8 0.00
53 6 0.00
54 153 0.09
55 414 0.23
56 139 0.08
57 233 0.13
58 184 0.10
59 121 0.07
60 212 0.12
61 144 0.08
62 46 0.03
63 34 0.02
64 76 0.04
65 2 0.00
ACGTcount: A:0.23, C:0.17, G:0.33, T:0.28
Consensus pattern (56 bp):
CTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGA
Found at i:8946238 original size:14 final size:13
Alignment explanation
Indices: 8946184--8946237 Score: 53
Period size: 14 Copynumber: 4.3 Consensus size: 13
8946174 CCCTTTTTTA
8946184 TTTTGCTTTTGCAC
1 TTTTGCTTTTG-AC
*
8946198 TTTTGCTTTTCA-
1 TTTTGCTTTTGAC
8946210 TTTT--TTTGTG-C
1 TTTTGCTTT-TGAC
8946221 TTTTGCTTTTGAC
1 TTTTGCTTTTGAC
8946234 TTTT
1 TTTT
8946238 TTTTTGTCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 11
0.72 0.04 0.24
Matches are distributed among these distances:
10 3 0.09
11 5 0.15
12 6 0.18
13 9 0.27
14 10 0.30
ACGTcount: A:0.06, C:0.15, G:0.13, T:0.67
Consensus pattern (13 bp):
TTTTGCTTTTGAC
Found at i:8953244 original size:20 final size:19
Alignment explanation
Indices: 8953215--8953289 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 19
8953205 AAAAAGACAT
8953215 AATGTATCGATACATTGAA
1 AATGTATCGATACATTGAA
* *
8953234 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTGA-A
* *
8953255 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTG-AA
8953275 AATGTATCGATACAT
1 AATGTATCGATACAT
8953290 CTGGGTAAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.41, C:0.12, G:0.13, T:0.33
Consensus pattern (19 bp):
AATGTATCGATACATTGAA
Found at i:8953272 original size:40 final size:39
Alignment explanation
Indices: 8953212--8953289 Score: 120
Period size: 40 Copynumber: 2.0 Consensus size: 39
8953202 GTTAAAAAGA
*
8953212 CATAATGTATCGATACATTGAAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
* *
8953251 CATACATGTATCGATATATTGAAAAATGTATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
8953290 CTGGGTAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
39 4 0.11
40 31 0.89
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.33
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:8954899 original size:51 final size:52
Alignment explanation
Indices: 8954833--8954948 Score: 135
Period size: 51 Copynumber: 2.2 Consensus size: 52
8954823 TTATTTTTGA
* ** * ***
8954833 GGGGATACTCAAACCCCGGCTTTATTTCTAAAATATTTAT-TTCTCACAATC
1 GGGGATACTCCAACCCCAACTTTATTTCTAAAACACCAATCTTCTCACAATC
* *
8954884 GGGGATACTCCAACCCCAATTTTATTTCTAAAACACCAATCTTTTCACAATC
1 GGGGATACTCCAACCCCAACTTTATTTCTAAAACACCAATCTTCTCACAATC
*
8954936 GAGGATACTCCAA
1 GGGGATACTCCAA
8954949 TCTCGTTATT
Statistics
Matches: 54, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
51 32 0.59
52 22 0.41
ACGTcount: A:0.32, C:0.26, G:0.11, T:0.31
Consensus pattern (52 bp):
GGGGATACTCCAACCCCAACTTTATTTCTAAAACACCAATCTTCTCACAATC
Found at i:8954988 original size:131 final size:130
Alignment explanation
Indices: 8954755--8955089 Score: 465
Period size: 131 Copynumber: 2.6 Consensus size: 130
8954745 TTTTCATCCT
* * * * *
8954755 GGGATACTCCAACCCCGATTTTATTTCAAAAATATCAATTTTTCATAATCGAGGATACTCTAATC
1 GGGATACTCCAACCCCAATTTTATTTCTAAAACATCAATTTTTCACAATCGAGGATACTCCAATC
* ** ** * *
8954820 CCCTTATTTTTGAGGGGATACTCAAACCCCGGCTTTATTTCTAAAATATTTATTTCTCACAATCG
66 CCGTTATTTCCGAGGGGATACTCAAACCCCAACTTTATTTCTAAAATATTGATTTATCACAATCG
*
8954885 GGGATACTCCAACCCCAATTTTATTTCTAAAACACCAATCTTTTCACAATCGAGGATACTCCAAT
1 GGGATACTCCAACCCCAATTTTATTTCTAAAACATCAAT-TTTTCACAATCGAGGATACTCCAAT
* *
8954950 CTCGTTATTTCCGAGGGGATACTCAAACCCCAACTTTATTTCTAAAATATTGATTTATCATAATC
65 CCCGTTATTTCCGAGGGGATACTCAAACCCCAACTTTATTTCTAAAATATTGATTTATCACAATC
8955015 G
130 G
* * * * *
8955016 GGGATACTTCAACCCCTATTTTATTTTTAAAACATCAATTTTTTACAATC-AGGGATACTCCAAC
1 GGGATACTCCAACCCCAATTTTATTTCTAAAACATCAATTTTTCACAATCGA-GGATACTCCAAT
8955080 CCCGTTATTT
65 CCCGTTATTT
8955090 TTGCGATGAT
Statistics
Matches: 181, Mismatches: 22, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
129 1 0.01
130 65 0.36
131 115 0.64
ACGTcount: A:0.31, C:0.23, G:0.11, T:0.35
Consensus pattern (130 bp):
GGGATACTCCAACCCCAATTTTATTTCTAAAACATCAATTTTTCACAATCGAGGATACTCCAATC
CCGTTATTTCCGAGGGGATACTCAAACCCCAACTTTATTTCTAAAATATTGATTTATCACAATCG
Found at i:8958498 original size:431 final size:431
Alignment explanation
Indices: 8957633--8958494 Score: 1627
Period size: 431 Copynumber: 2.0 Consensus size: 431
8957623 TCTTTCAAAG
* *
8957633 CTCTTTTATTCATTCTTTGTACTCAAACTTCCACAAACACCAGCCTTGTAAAGCTTTATTTAGTT
1 CTCTGTTATTCATTCTTTGTACTCAAACTTCCACAAACACCAACCTTGTAAAGCTTTATTTAGTT
8957698 TATGTTCATTTATTCTCTTTGTAAGTTTGTATTCAATCTTGTTAGCAAGCACTTGAGAATTTGGG
66 TATGTTCATTTATTCTCTTTGTAAGTTTGTATTCAATCTTGTTAGCAAGCACTTGAGAATTTGGG
8957763 GTATAATTCTCCAAGTGATTGAGAGGTTCTATCTTAGCCTTGAAAGATAGTGTGGAGGTTCTATC
131 GTATAATTCTCCAAGTGATTGAGAGGTTCTATCTTAGCCTTGAAAGATAGTGTGGAGGTTCTATC
8957828 TTAGCCTTTGTAAAAGATAGAGGTGTAAGGTTATACCTTAGCCTTAAAGGTAAACAATTCGAGTA
196 TTAGCCTTTGTAAAAGATAGAGGTGTAAGGTTATACCTTAGCCTTAAAGGTAAACAATTCGAGTA
*
8957893 GTGAATTGTGGAAACCACTTGGTAAGGAAGTGCGAAGGAGAGAGAATGTAGGTGTCATATTTGGA
261 GTGAATTGTGGAAACCACTTGGTAAGGAAGTGCCAAGGAGAGAGAATGTAGGTGTCATATTTGGA
*
8957958 CTGAACCTTTATAAATTCGGTGTTTGTTCTTTCTATCCTTTGCTCTCATTTATTTATCCATTGTC
326 CTGAACCTTTATAAATTCGGTGTTTGTTCTTTCTATCATTTGCTCTCATTTATTTATCCATTGTC
8958023 TTGCAAAAAAGTGTTAATCTTCCATTAGAACCAATTCACCC
391 TTGCAAAAAAGTGTTAATCTTCCATTAGAACCAATTCACCC
* *
8958064 CTCTGTTATTCATTCTTTGTACTTAAACTTCTACAAACACCAACCTTGTAAAGCTTTATTTAGTT
1 CTCTGTTATTCATTCTTTGTACTCAAACTTCCACAAACACCAACCTTGTAAAGCTTTATTTAGTT
*
8958129 TGTGTTCATTTATTCTCTTTGTAAGTTTGTATTCAATCTTGTTAGCAAGCACTTGAGAATTTGGG
66 TATGTTCATTTATTCTCTTTGTAAGTTTGTATTCAATCTTGTTAGCAAGCACTTGAGAATTTGGG
*
8958194 GTATAATTCTCCAAGTGTTTGAGAGGTTCTATCTTAGCCTTGAAAGATAGTGTGGAGGTTCTATC
131 GTATAATTCTCCAAGTGATTGAGAGGTTCTATCTTAGCCTTGAAAGATAGTGTGGAGGTTCTATC
*
8958259 TTAGCCTTTGTAAAAGATAGGGGTGTAAGGTTATACCTTAGCCTTAAAGGTAAACAATTCGAGTA
196 TTAGCCTTTGTAAAAGATAGAGGTGTAAGGTTATACCTTAGCCTTAAAGGTAAACAATTCGAGTA
*
8958324 GTGAATTGTGGAAACCACTTGGTAAGGAAGTGCCAA-GAGAGAGAATGTAGGTGTCATGTTTGGA
261 GTGAATTGTGGAAACCACTTGGTAAGGAAGTGCCAAGGAGAGAGAATGTAGGTGTCATATTTGGA
8958388 CTGAACCTTTATAAATTCGGTGTTTGTTCTTTCTATCATTTGCTCTCATTTATTTATCCATTGTC
326 CTGAACCTTTATAAATTCGGTGTTTGTTCTTTCTATCATTTGCTCTCATTTATTTATCCATTGTC
8958453 TTGCAAAAAAGTGTTAATCTTCCATTAGAACCAATTCACCC
391 TTGCAAAAAAGTGTTAATCTTCCATTAGAACCAATTCACCC
8958494 C
1 C
8958495 CTCTTGGTTC
Statistics
Matches: 421, Mismatches: 10, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
430 133 0.32
431 288 0.68
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.38
Consensus pattern (431 bp):
CTCTGTTATTCATTCTTTGTACTCAAACTTCCACAAACACCAACCTTGTAAAGCTTTATTTAGTT
TATGTTCATTTATTCTCTTTGTAAGTTTGTATTCAATCTTGTTAGCAAGCACTTGAGAATTTGGG
GTATAATTCTCCAAGTGATTGAGAGGTTCTATCTTAGCCTTGAAAGATAGTGTGGAGGTTCTATC
TTAGCCTTTGTAAAAGATAGAGGTGTAAGGTTATACCTTAGCCTTAAAGGTAAACAATTCGAGTA
GTGAATTGTGGAAACCACTTGGTAAGGAAGTGCCAAGGAGAGAGAATGTAGGTGTCATATTTGGA
CTGAACCTTTATAAATTCGGTGTTTGTTCTTTCTATCATTTGCTCTCATTTATTTATCCATTGTC
TTGCAAAAAAGTGTTAATCTTCCATTAGAACCAATTCACCC
Found at i:8962113 original size:112 final size:109
Alignment explanation
Indices: 8961873--8962123 Score: 308
Period size: 112 Copynumber: 2.2 Consensus size: 109
8961863 ATTGAATGTC
* * *
8961873 TCGATACATCATATGAATGTATCGATACATTTGTTGATAGTAGCTAAAGAAATATTAAAACCCTT
1 TCGATACATC-TATAAATGTATCGATACATCTGTTGATAGTAGCTAAAGAAATATTAAAACCCGT
8961938 ATTTGTATCGATACATGCCAAAATGTATCAATACAATACACATATA
65 ATTTGTATCGATACATG-CAAAATGTATCAATACAATACACATATA
* * * * * **
8961984 TGGATAAAT-TATGTAAATGTATCGATACATCTGATTGGTAGTAGCTAAAGAAATCTTGAAATTC
1 TCGATACATCTA--TAAATGTATCGATACATCTG-TTGATAGTAGCTAAAGAAATATTAAAACCC
8962048 GTATTTGTATCGATACACATG-AAAATGTATCAATACAATACACAATATA
63 GTATTTGTATCGAT--ACATGCAAAATGTATCAATACAATACAC-ATATA
* *
8962097 TCGATACATCTCTAAATGTATCAATAC
1 TCGATACATCTATAAATGTATCGATAC
8962124 TTTGAGTTAC
Statistics
Matches: 119, Mismatches: 14, Indels: 13
0.82 0.10 0.09
Matches are distributed among these distances:
109 2 0.02
111 25 0.21
112 74 0.62
113 12 0.10
114 6 0.05
ACGTcount: A:0.40, C:0.14, G:0.13, T:0.33
Consensus pattern (109 bp):
TCGATACATCTATAAATGTATCGATACATCTGTTGATAGTAGCTAAAGAAATATTAAAACCCGTA
TTTGTATCGATACATGCAAAATGTATCAATACAATACACATATA
Found at i:8964454 original size:131 final size:131
Alignment explanation
Indices: 8964225--8964530 Score: 276
Period size: 131 Copynumber: 2.3 Consensus size: 131
8964215 TTAATTTGCT
* * * *
8964225 ATGATCTTATGTTTTCTTTATTCCTTTGGTGATTTGGATTGAATTTACAATATGTTTGATGAATT
1 ATGATCTTATGTTTTCTTTATTCCTTTGATGATTTGGATTCAATTTACAACATGTTTGATGAACT
* **
8964290 AATGATAAAACTTAAAGTATTGAGTTGTTTA-TTTCCCTAAAAAGGTTTAGCCATGATGGATTAT
66 AATGATAAAACTTAAAGTATTGACTTGGCTATTTTCCCTAAAAAGGTTTAGCCATGATGGATTAT
8964354 C
131 C
* * * ** ** *
8964355 ATGATCTTGTGTTTTTCTTTTTTCCTTTGATGATTTGGGTTCTGTTTACTGCATGTTTGGTGAAC
1 ATGATCTTATG-TTTTCTTTATTCCTTTGATGATTTGGATTCAATTTACAACATGTTTGATGAAC
* * * * * ** * * *
8964420 TGATGATGAAATTTGAAGTATTGTCTTGGCTATTTTCCCT-AGTAGGTTCAACCATG-GGAGATT
65 TAATGATAAAACTTAAAGTATTGACTTGGCTATTTTCCCTAAAAAGGTTTAGCCATGATG-GA-T
*
8964483 GTTTGCC
128 -TAT--C
* *
8964490 ATGATCTTATGTTTTTCTTTGTTCCTTCGATGATTTGGATT
1 ATGATCTTATG-TTTTCTTTATTCCTTTGATGATTTGGATT
8964531 ACATGTTTGA
Statistics
Matches: 139, Mismatches: 30, Indels: 9
0.78 0.17 0.05
Matches are distributed among these distances:
130 11 0.08
131 80 0.58
132 8 0.06
133 2 0.01
135 38 0.27
ACGTcount: A:0.22, C:0.11, G:0.20, T:0.47
Consensus pattern (131 bp):
ATGATCTTATGTTTTCTTTATTCCTTTGATGATTTGGATTCAATTTACAACATGTTTGATGAACT
AATGATAAAACTTAAAGTATTGACTTGGCTATTTTCCCTAAAAAGGTTTAGCCATGATGGATTAT
C
Found at i:8965969 original size:31 final size:31
Alignment explanation
Indices: 8965932--8965992 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
8965922 GTTGTAACAG
8965932 TATATTTCTATTTGATTAGACTTAGAAAGGA
1 TATATTTCTATTTGATTAGACTTAGAAAGGA
*
8965963 TATATTTCTATTTGATTATACTTAGAAAGG
1 TATATTTCTATTTGATTAGACTTAGAAAGG
8965993 TCCAAGAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.34, C:0.07, G:0.15, T:0.44
Consensus pattern (31 bp):
TATATTTCTATTTGATTAGACTTAGAAAGGA
Found at i:8967673 original size:8 final size:8
Alignment explanation
Indices: 8967660--8967692 Score: 52
Period size: 7 Copynumber: 4.4 Consensus size: 8
8967650 CCAAATCCAT
8967660 CCTCCCCC
1 CCTCCCCC
8967668 CCT-CCCC
1 CCTCCCCC
8967675 CCTCCCCC
1 CCTCCCCC
8967683 CC-CCCCC
1 CCTCCCCC
8967690 CCT
1 CCT
8967693 TCTCTCTGCG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
7 14 0.61
8 9 0.39
ACGTcount: A:0.00, C:0.88, G:0.00, T:0.12
Consensus pattern (8 bp):
CCTCCCCC
Found at i:8967680 original size:15 final size:15
Alignment explanation
Indices: 8967660--8967692 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
8967650 CCAAATCCAT
*
8967660 CCTCCCCCCCTCCCC
1 CCTCCCCCCCCCCCC
8967675 CCTCCCCCCCCCCCC
1 CCTCCCCCCCCCCCC
8967690 CCT
1 CCT
8967693 TCTCTCTGCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.00, C:0.88, G:0.00, T:0.12
Consensus pattern (15 bp):
CCTCCCCCCCCCCCC
Found at i:8981803 original size:24 final size:25
Alignment explanation
Indices: 8981776--8981828 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 25
8981766 AAAGGTTTAG
8981776 AGGTGAGTTCTACAAGGGGTTCAA-
1 AGGTGAGTTCTACAAGGGGTTCAAT
**
8981800 AGGTGAGTTCTACAATTGGTTCAAT
1 AGGTGAGTTCTACAAGGGGTTCAAT
8981825 AGGT
1 AGGT
8981829 TCAGAAGTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 22 0.85
25 4 0.15
ACGTcount: A:0.28, C:0.11, G:0.30, T:0.30
Consensus pattern (25 bp):
AGGTGAGTTCTACAAGGGGTTCAAT
Found at i:8981809 original size:12 final size:14
Alignment explanation
Indices: 8981776--8981814 Score: 50
Period size: 12 Copynumber: 3.1 Consensus size: 14
8981766 AAAGGTTTAG
8981776 AGGTGAGTTCTACA
1 AGGTGAGTTCTACA
8981790 AGG-G-GTTC-A-A
1 AGGTGAGTTCTACA
8981800 AGGTGAGTTCTACA
1 AGGTGAGTTCTACA
8981814 A
1 A
8981815 TTGGTTCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 8
0.72 0.00 0.28
Matches are distributed among these distances:
10 4 0.19
11 2 0.10
12 8 0.38
13 2 0.10
14 5 0.24
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.26
Consensus pattern (14 bp):
AGGTGAGTTCTACA
Found at i:8987515 original size:30 final size:30
Alignment explanation
Indices: 8987480--8987569 Score: 135
Period size: 30 Copynumber: 3.0 Consensus size: 30
8987470 GATTTAAATT
*
8987480 AGATAGTGATGCATTAGTCCTTAATTTAAG
1 AGATAGTGATGCACTAGTCCTTAATTTAAG
* * *
8987510 AGATAGTGATGCACTAGTCTTTAATCTAAA
1 AGATAGTGATGCACTAGTCCTTAATTTAAG
*
8987540 AGATAGTGGTGCACTAGTCCTTAATTTAAG
1 AGATAGTGATGCACTAGTCCTTAATTTAAG
8987570 GGATTTAAAT
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 52 1.00
ACGTcount: A:0.33, C:0.12, G:0.20, T:0.34
Consensus pattern (30 bp):
AGATAGTGATGCACTAGTCCTTAATTTAAG
Found at i:8987995 original size:23 final size:23
Alignment explanation
Indices: 8987943--8987987 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
8987933 ATAGGTTCAA
*
8987943 AATTCTTCTGAAAAAAAGTCTGG
1 AATTCTTCTGAAAAAAAGTATGG
*
8987966 AATTCTTCT-AAAAAAATTATGG
1 AATTCTTCTGAAAAAAAGTATGG
8987988 GATTTCTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.33
Consensus pattern (23 bp):
AATTCTTCTGAAAAAAAGTATGG
Found at i:8988420 original size:10 final size:10
Alignment explanation
Indices: 8988407--8988443 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
8988397 ATTCTCTAGC
8988407 AACCTGGAGA
1 AACCTGGAGA
*
8988417 AACCTGCAGCA
1 AACCTGGAG-A
8988428 AACCTGGAGA
1 AACCTGGAGA
8988438 AACCTG
1 AACCTG
8988444 CAAGTACATG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 15 0.62
11 9 0.38
ACGTcount: A:0.38, C:0.27, G:0.24, T:0.11
Consensus pattern (10 bp):
AACCTGGAGA
Found at i:8990276 original size:30 final size:30
Alignment explanation
Indices: 8990240--8990327 Score: 140
Period size: 30 Copynumber: 2.9 Consensus size: 30
8990230 AATTAAATAG
*
8990240 TGGTGCATTAGTCCTTAATTTAAGGGATAA
1 TGGTGCACTAGTCCTTAATTTAAGGGATAA
* * *
8990270 TGGTGCACTAGTCCTTAATCTAAGGGACAG
1 TGGTGCACTAGTCCTTAATTTAAGGGATAA
8990300 TGGTGCACTAGTCCTTAATTTAAGGGAT
1 TGGTGCACTAGTCCTTAATTTAAGGGAT
8990328 TTAAATTAGT
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 52 1.00
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (30 bp):
TGGTGCACTAGTCCTTAATTTAAGGGATAA
Found at i:8996700 original size:23 final size:22
Alignment explanation
Indices: 8996670--8996716 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
8996660 TATTTGTTTA
*
8996670 TTAAATTAAA-TAGATAGATAAC
1 TTAAATTAAACTACATAGA-AAC
8996692 TTAATATTAAACTACATAGAAAC
1 TTAA-ATTAAACTACATAGAAAC
8996715 TT
1 TT
8996717 TTATTATATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 4 0.18
23 11 0.50
24 7 0.32
ACGTcount: A:0.51, C:0.09, G:0.06, T:0.34
Consensus pattern (22 bp):
TTAAATTAAACTACATAGAAAC
Found at i:9002650 original size:214 final size:215
Alignment explanation
Indices: 9002414--9002800 Score: 643
Period size: 214 Copynumber: 1.8 Consensus size: 215
9002404 TTTTTTTTTT
* * *
9002414 TTTTTTTGGTGGAGCCGACTCTCTTTTCTTTCATACAGCCTTTATGCAAAGAATATACTAAGTTA
1 TTTTTTTGGTGGAGCCGACTCTCTTTCCTTACATACAGCCATTATGCAAAGAATATACTAAGTTA
* * *
9002479 TTCACAAGGCACAAAAGGCTATTTTACCACTAAGACACTGTCATCTTACAATGAAGAA-GAAAAA
66 CTCAAAAGGCAAAAAAGGCTATTTTACCACTAAGACACTGTCATCTTACAATGAA-AATGAAAAA
9002543 CTTTCAGAGAAATCACCAAAAATTGTTCTATACAAAGCTATAAGACTTTTTTACCGCTAAGACAC
130 CTTTCAGAGAAATCACCAAAAATTGTTCTATACAAAGCTATAAGACTTTTTTACCGCTAAGACAC
9002608 TGTCATCAAAATATCTAAGCC
195 TGTCATCAAAATATCTAAGCC
* * *
9002629 TTTTTTT-GTGGAGCTGACTCTCTTTCCTTACATGCAGCCATTATGCAAAGAATATACTCAGTTA
1 TTTTTTTGGTGGAGCCGACTCTCTTTCCTTACATACAGCCATTATGCAAAGAATATACTAAGTTA
* *
9002693 CTCAAAAGGCAAAAAAGGCTATTTTACCACTAAGACACTGTCATCTTATAGTGAAAATGAAAAAC
66 CTCAAAAGGCAAAAAAGGCTATTTTACCACTAAGACACTGTCATCTTACAATGAAAATGAAAAAC
*
9002758 TTTCAGAGAAATCACCAAAAATTGTTCTATGCAAAGCTATAAG
131 TTTCAGAGAAATCACCAAAAATTGTTCTATACAAAGCTATAAG
9002801 TTCTACCTCC
Statistics
Matches: 159, Mismatches: 12, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
213 2 0.01
214 150 0.94
215 7 0.04
ACGTcount: A:0.36, C:0.20, G:0.14, T:0.30
Consensus pattern (215 bp):
TTTTTTTGGTGGAGCCGACTCTCTTTCCTTACATACAGCCATTATGCAAAGAATATACTAAGTTA
CTCAAAAGGCAAAAAAGGCTATTTTACCACTAAGACACTGTCATCTTACAATGAAAATGAAAAAC
TTTCAGAGAAATCACCAAAAATTGTTCTATACAAAGCTATAAGACTTTTTTACCGCTAAGACACT
GTCATCAAAATATCTAAGCC
Found at i:9003368 original size:2 final size:2
Alignment explanation
Indices: 9003361--9003433 Score: 91
Period size: 2 Copynumber: 38.0 Consensus size: 2
9003351 CTAAGAAAAT
* *
9003361 TA TA TA TA TA TA TA TA TA TA -A CTA -A GA -A AA T- TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA
9003400 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9003434 AGTAGGTGGC
Statistics
Matches: 65, Mismatches: 1, Indels: 10
0.86 0.01 0.13
Matches are distributed among these distances:
1 4 0.06
2 60 0.92
3 1 0.02
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (2 bp):
TA
Found at i:9003384 original size:31 final size:31
Alignment explanation
Indices: 9003349--9003411 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
9003339 AAAGTCAGGG
9003349 AACTAAGAAAATTATATATATATATATATAT
1 AACTAAGAAAATTATATATATATATATATAT
9003380 AACTAAGAAAATTATATATATATATATATAT
1 AACTAAGAAAATTATATATATATATATATAT
9003411 A
1 A
9003412 TATATATATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (31 bp):
AACTAAGAAAATTATATATATATATATATAT
Found at i:9012220 original size:16 final size:16
Alignment explanation
Indices: 9012199--9012232 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
9012189 TAAATGTCAA
9012199 ACCATATCAGATTACT
1 ACCATATCAGATTACT
9012215 ACCATATCAGATTACT
1 ACCATATCAGATTACT
9012231 AC
1 AC
9012233 TAGAATAGCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.38, C:0.26, G:0.06, T:0.29
Consensus pattern (16 bp):
ACCATATCAGATTACT
Found at i:9015018 original size:79 final size:79
Alignment explanation
Indices: 9014905--9015116 Score: 216
Period size: 79 Copynumber: 2.7 Consensus size: 79
9014895 TCCCTCGGAG
* * * * * **
9014905 ATAACAGGCTTAGAGTATCTCCAATGGCAGAAAATCGGTGTTTTAGAAATAAATTCAGAGTTAGA
1 ATAACAGGATTGGAGTATCCCCAATGGCAGAAAATCGATATTTTAGAAATAAAACCAGAGTTAGA
9014970 GTATCC-CTTCAAAA
66 GTATCCTC-TCAAAA
* * *
9014984 ATAA-AGGGGTTGGAGTATCCCCAATGG-TGAAAAATCGATATTTTAGAAATAAAACCAGAGTTG
1 ATAACA-GGATTGGAGTATCCCCAATGGCAG-AAAATCGATATTTTAGAAATAAAACCAGAGTTA
*
9015047 GAGTGTCCTCTCAAAA
64 GAGTATCCTCTCAAAA
** * ** *
9015063 ATAACAGGATTGGAGTAT-CCTGATAGTGGAAAATCGATATTTTAAAAATAAAAC
1 ATAACAGGATTGGAGTATCCCCAATGGCAGAAAATCGATATTTTAGAAATAAAAC
9015117 ATCAATTACA
Statistics
Matches: 112, Mismatches: 16, Indels: 11
0.81 0.12 0.08
Matches are distributed among these distances:
78 31 0.28
79 79 0.71
80 2 0.02
ACGTcount: A:0.40, C:0.13, G:0.20, T:0.27
Consensus pattern (79 bp):
ATAACAGGATTGGAGTATCCCCAATGGCAGAAAATCGATATTTTAGAAATAAAACCAGAGTTAGA
GTATCCTCTCAAAA
Found at i:9016903 original size:20 final size:20
Alignment explanation
Indices: 9016880--9016936 Score: 87
Period size: 20 Copynumber: 2.9 Consensus size: 20
9016870 AAGTACCCAG
*
9016880 ATGTATCAATACATTTTTCA
1 ATGTATCGATACATTTTTCA
*
9016900 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTTTTCA
*
9016920 ATATATCGATACATTTT
1 ATGTATCGATACATTTT
9016937 GTCTTTTTAC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.33, C:0.16, G:0.07, T:0.44
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:9024046 original size:23 final size:23
Alignment explanation
Indices: 9023983--9024052 Score: 58
Period size: 23 Copynumber: 3.0 Consensus size: 23
9023973 CTTCAAAATG
9023983 ACAAAAAAAAG-GTCAAAAGTAAAA
1 ACAAAAAAAAGTGT-AAAAG-AAAA
*
9024007 GTAC-AAAATAA-TG-AAAAGAAAA
1 --ACAAAAAAAAGTGTAAAAGAAAA
*
9024029 ACAAAAAAAAGTGTAAAAGCAAA
1 ACAAAAAAAAGTGTAAAAGAAAA
9024052 A
1 A
9024053 TGAAAAGGGA
Statistics
Matches: 37, Mismatches: 3, Indels: 11
0.73 0.06 0.22
Matches are distributed among these distances:
20 2 0.05
21 6 0.16
22 6 0.16
23 14 0.38
25 7 0.19
26 2 0.05
ACGTcount: A:0.70, C:0.07, G:0.13, T:0.10
Consensus pattern (23 bp):
ACAAAAAAAAGTGTAAAAGAAAA
Found at i:9027453 original size:166 final size:166
Alignment explanation
Indices: 9027242--9027591 Score: 399
Period size: 166 Copynumber: 2.1 Consensus size: 166
9027232 ACTAAAATAA
* ** *
9027242 AAATTTTTAAAAATTTAGGAACTAAATAGCAAATTTGTTTTTTAGAAGAAAAAT-AGCTATCTTA
1 AAATTTTCAAAAATTTAAAAACTAAATAGCAAATTTGTATTTTAGAAGAAAAATCAGC-ATCTTA
* * * * *
9027306 GTCATTTTCTTTAAATTTCAATTATTCCTATAGTC-TTCTGTAGGGATATAAAAATTTTTAAAAC
65 GTCATCTTCTTTAAATTTCAATCATCCCTATAGCCTTTC-ATAGGGATATAAAAATTTTTAAAAC
* *
9027370 TTTTT-ATATCTTTTTG-GCTTTCCGT-TGGGTATGAAATG
129 TTTTTGA-ATCCTTTCGAGCTTT-CGTCT-GGTATGAAATG
* * * *
9027408 AAATTTTCAAAAGTTTAAAAACTATATAGCAAATTTAG-ATTTTAGAAGAAAAATCATCATCTTT
1 AAATTTTCAAAAATTTAAAAACTAAATAGCAAATTT-GTATTTTAGAAGAAAAATCAGCATCTTA
** * * *
9027472 GTCATCTTCTTTACGTTTCTATCATCCCTATGGCCTTTCATAGGGATATAGAAATTTTTAAAACT
65 GTCATCTTCTTTAAATTTCAATCATCCCTATAGCCTTTCATAGGGATATAAAAATTTTTAAAACT
*
9027537 TTTTGAATCCTTTCGATCTTTCGTCTGGTATGAAATG
130 TTTTGAATCCTTTCGAGCTTTCGTCTGGTATGAAATG
*
9027574 TAA-TTTCAAAAATTTAAA
1 AAATTTTCAAAAATTTAAA
9027592 GACTTATTTA
Statistics
Matches: 155, Mismatches: 23, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
165 14 0.09
166 129 0.83
167 12 0.08
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.42
Consensus pattern (166 bp):
AAATTTTCAAAAATTTAAAAACTAAATAGCAAATTTGTATTTTAGAAGAAAAATCAGCATCTTAG
TCATCTTCTTTAAATTTCAATCATCCCTATAGCCTTTCATAGGGATATAAAAATTTTTAAAACTT
TTTGAATCCTTTCGAGCTTTCGTCTGGTATGAAATG
Found at i:9030291 original size:2 final size:2
Alignment explanation
Indices: 9030284--9030317 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
9030274 ACATACGTGA
9030284 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9030318 TCATTCATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9031811 original size:18 final size:20
Alignment explanation
Indices: 9031790--9031842 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
9031780 AATTTTATCT
* *
9031790 AAATAAAAAAGAAA-GAAA-
1 AAATAAAAAACAAATAAAAC
9031808 AAATAATAAAACAAATAAAAC
1 AAATAA-AAAACAAATAAAAC
9031829 AAATAAAAAACAAA
1 AAATAAAAAACAAA
9031843 AAAGCATGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 6 0.20
19 7 0.23
20 11 0.37
21 6 0.20
ACGTcount: A:0.81, C:0.06, G:0.04, T:0.09
Consensus pattern (20 bp):
AAATAAAAAACAAATAAAAC
Found at i:9031818 original size:9 final size:9
Alignment explanation
Indices: 9031812--9031836 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
9031802 AAGAAAAAAT
9031812 AATAAAACA
1 AATAAAACA
9031821 AATAAAACA
1 AATAAAACA
9031830 AATAAAA
1 AATAAAA
9031837 AACAAAAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.80, C:0.08, G:0.00, T:0.12
Consensus pattern (9 bp):
AATAAAACA
Found at i:9031845 original size:18 final size:17
Alignment explanation
Indices: 9031790--9031845 Score: 58
Period size: 18 Copynumber: 3.0 Consensus size: 17
9031780 AATTTTATCT
*
9031790 AAATAAAAAAGAAAGAAA
1 AAATAAAAAACAAA-AAA
9031808 AAATAATAAAACAAATAAAA
1 AAATAA-AAAAC-AA-AAAA
9031828 CAAATAAAAAACAAAAAA
1 -AAATAAAAAACAAAAAA
9031846 GCATGAAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
18 10 0.30
19 6 0.18
20 10 0.30
21 7 0.21
ACGTcount: A:0.82, C:0.05, G:0.04, T:0.09
Consensus pattern (17 bp):
AAATAAAAAACAAAAAA
Found at i:9031872 original size:17 final size:17
Alignment explanation
Indices: 9031852--9031903 Score: 61
Period size: 18 Copynumber: 3.1 Consensus size: 17
9031842 AAAAGCATGA
* * *
9031852 AATAAAAAAGTGTAGAT
1 AATAAAAAAGAGAAAAT
9031869 AATAAAAAAAGAGAAAAT
1 AAT-AAAAAAGAGAAAAT
9031887 AATAAAAAAGA-AAAAT
1 AATAAAAAAGAGAAAAT
9031903 A
1 A
9031904 TGAGGAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
16 6 0.19
17 11 0.35
18 14 0.45
ACGTcount: A:0.73, C:0.00, G:0.12, T:0.15
Consensus pattern (17 bp):
AATAAAAAAGAGAAAAT
Found at i:9031878 original size:18 final size:18
Alignment explanation
Indices: 9031867--9031903 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
9031857 AAAAGTGTAG
9031867 ATAATAAAAAAAGAGAAA
1 ATAATAAAAAAAGAGAAA
9031885 ATAAT-AAAAAAGA-AAA
1 ATAATAAAAAAAGAGAAA
9031901 ATA
1 ATA
9031904 TGAGGAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.32
17 8 0.42
18 5 0.26
ACGTcount: A:0.78, C:0.00, G:0.08, T:0.14
Consensus pattern (18 bp):
ATAATAAAAAAAGAGAAA
Found at i:9038327 original size:49 final size:49
Alignment explanation
Indices: 9038171--9038738 Score: 444
Period size: 49 Copynumber: 11.7 Consensus size: 49
9038161 GAATGACAAC
* * * * * *
9038171 GTGCTGATTCATGGCCAGCGACATTAGACTTGAAGAAGAA--TGCCAAT
1 GTGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGCCAAT
** * * * * * *
9038218 GTGCTGAGACAAGGCCAGCGACATTGGGCTTAGGAATGTTAAAGATGCCAAT
1 GTGCTGATTCAAGGCCAACGATATTGGACTTA--AA-GATGAAGGTGCCAAT
* * * ** *
9038270 ATGTTGATTCAAGGCCAATGATATCAGACTTAAAGATAAAGGTGCCAAT
1 GTGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGCCAAT
* * * * * **
9038319 GTACTGATTCAAGGCCAGCGATATCGAACTTAAAGATGAACGTGCTGAT
1 GTGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGCCAAT
*
9038368 GTGTTGATTCAAGGCCAACGATATTGGACTTAAAGATGGTTAAGGTGCCAAT
1 GTGCTGATTCAAGGCCAACGATATTGGACTTAAAGAT-G--AAGGTGCCAAT
*
9038420 GTGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGGAGGTGCCAAT
1 GTGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGCCAAT
* * * * * * *
9038469 GTGATGATTTAAGGCTAGCAACATTGGACTTAAAGGTGAAGGTGCCAAT
1 GTGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGCCAAT
* * * * *
9038518 GTGCTGATTTAAGGCCAGCAACATTGGACTT----A--AAGGTGCTAAT
1 GTGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGCCAAT
* * * *
9038561 ATGCTGATTAAAGGCTAGCGATATTGGACTTAAAGATGACAAAGGTGCCAAT
1 GTGCTGATTCAAGGCCAACGATATTGGACTTAAAGATG---AAGGTGCCAAT
* ** * * *
9038613 ATGCTGATTCAAGGTGAGCGATATTGGACTTATAGGTGAAGGTGCCAAT
1 GTGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGCCAAT
* * * *
9038662 GTGCTGATTTAAGGCCAGCAACATTGGACTT----A--AAGGTGCCAAT
1 GTGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGCCAAT
* *
9038705 ATGCTGATTCAAGGCCAGCGATATTGGACTTAAA
1 GTGCTGATTCAAGGCCAACGATATTGGACTTAAA
9038739 AAAAGATGCC
Statistics
Matches: 425, Mismatches: 76, Indels: 41
0.78 0.14 0.08
Matches are distributed among these distances:
43 74 0.17
47 27 0.06
49 201 0.47
50 6 0.01
51 1 0.00
52 116 0.27
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (49 bp):
GTGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGCCAAT
Found at i:9038420 original size:101 final size:100
Alignment explanation
Indices: 9038171--9038738 Score: 460
Period size: 101 Copynumber: 5.8 Consensus size: 100
9038161 GAATGACAAC
* * * * * **
9038171 GTGCTGATTCATGGCCAGCGACATTAGACTTGAAGAAG--AA--TGCCAATGTGCTGAGACAAGG
1 GTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAGGTAAAGGTGCCAATGTGCTGATTCAAGG
* * * * *
9038232 CCAGCGACATTGGGCTTAGGAATGTTAAAGATGCCAAT
66 CCAGCGATATTGGACTTA--AA-GATGAAGGTGCCAAT
* * ** ** *
9038270 ATGTTGATTCAAGGCCAATGATATCAGACTTAAAGA--TAAAGGTGCCAATGTACTGATTCAAGG
1 GTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAGGTAAAGGTGCCAATGTGCTGATTCAAGG
* * * **
9038333 CCAGCGATATCGAACTTAAAGATGAACGTGCTGAT
66 CCAGCGATATTGGACTTAAAGATGAAGGTGCCAAT
* * *
9038368 GTGTTGATTCAAGGCCAACGATATTGGACTTAAAGATGGTTAAGGTGCCAATGTGCTGATTCAAG
1 GTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA-GGTAAAGGTGCCAATGTGCTGATTCAAG
* *
9038433 GCCAACGATATTGGACTTAAAGATGGAGGTGCCAAT
65 GCCAGCGATATTGGACTTAAAGATGAAGGTGCCAAT
* * * * * * *
9038469 GTGATGATTTAAGGCTAGCAACATTGGACTT-AA-AGGTGAAGGTGCCAATGTGCTGATTTAAGG
1 GTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAGGTAAAGGTGCCAATGTGCTGATTCAAGG
* * *
9038532 CCAGCAACATTGGACTT----A--AAGGTGCTAAT
66 CCAGCGATATTGGACTTAAAGATGAAGGTGCCAAT
* * * ** *
9038561 ATGCTGATTAAAGGCTAGCGATATTGGACTTAAAGATGACAAAGGTGCCAATATGCTGATTCAAG
1 GTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA-GGTAAAGGTGCCAATGTGCTGATTCAAG
** * *
9038626 GTGAGCGATATTGGACTTATAGGTGAAGGTGCCAAT
65 GCCAGCGATATTGGACTTAAAGATGAAGGTGCCAAT
* * * *
9038662 GTGCTGATTTAAGGCCAGCAACATTGGAC-T-------TAAAGGTGCCAATATGCTGATTCAAGG
1 GTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAGGTAAAGGTGCCAATGTGCTGATTCAAGG
9038719 CCAGCGATATTGGACTTAAA
66 CCAGCGATATTGGACTTAAA
9038739 AAAAGATGCC
Statistics
Matches: 381, Mismatches: 72, Indels: 39
0.77 0.15 0.08
Matches are distributed among these distances:
92 78 0.20
93 2 0.01
94 2 0.01
95 37 0.10
98 82 0.22
99 33 0.09
100 3 0.01
101 144 0.38
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (100 bp):
GTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAGGTAAAGGTGCCAATGTGCTGATTCAAGG
CCAGCGATATTGGACTTAAAGATGAAGGTGCCAAT
Found at i:9038430 original size:150 final size:150
Alignment explanation
Indices: 9038211--9038696 Score: 402
Period size: 150 Copynumber: 3.3 Consensus size: 150
9038201 TGAAGAAGAA
** * * * * * *
9038211 TGCCAATGTGCTGAGACAAGGCCAGCGACATTGGGCTT-AGGAAT-GTTAAAGATGCCAATATGT
1 TGCCAATGTGCTGATTCAAGGCCAACAACATTGGACTTAAAG-ATGGTT-AAGGTGCCAATATGC
*
9038274 TGATTCAAGGCCAATGATATCAGACTTAAAGATAAAGGTGCCAATGT-ACTGATTCAAGGCCAGC
64 TGATTCAAGGCCAACGATATCAGACTTAAAGATAAAGGTGCCAATGTGA-TGATTCAAGGCCAGC
* *
9038338 GATATCGAACTTAAAGATGAACG
128 AACATCGAACTTAAAGATGAACG
** * * * *
9038361 TGCTGATGTGTTGATTCAAGGCCAACGATATTGGACTTAAAGATGGTTAAGGTGCCAATGTGCTG
1 TGCCAATGTGCTGATTCAAGGCCAACAACATTGGACTTAAAGATGGTTAAGGTGCCAATATGCTG
** ** * *
9038426 ATTCAAGGCCAACGATATTGGACTTAAAGATGGAGGTGCCAATGTGATGATTTAAGGCTAGCAAC
66 ATTCAAGGCCAACGATATCAGACTTAAAGATAAAGGTGCCAATGTGATGATTCAAGGCCAGCAAC
* * * *
9038491 ATTGGACTTAAAGGTGAAGG
131 ATCGAACTTAAAGATGAACG
* * *
9038511 TGCCAATGTGCTGATTTAAGGCCAGCAACATTGGACTT----A-----AAGGTGCTAATATGCTG
1 TGCCAATGTGCTGATTCAAGGCCAACAACATTGGACTTAAAGATGGTTAAGGTGCCAATATGCTG
* * * ** * * **
9038567 ATTAAAGGCTAGCGATATTGGACTTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGTGAGC
66 ATTCAAGGCCAACGATATCAGACTTAAAGAT---AAAGGTGCCAATGTGATGATTCAAGGCCAGC
* * * * * * *
9038632 GATATTGGACTTATAGGTGAAGG
128 AACATCGAACTTAAAGATGAACG
* *
9038655 TGCCAATGTGCTGATTTAAGGCCAGCAACATTGGACTTAAAG
1 TGCCAATGTGCTGATTCAAGGCCAACAACATTGGACTTAAAG
9038697 GTGCCAATAT
Statistics
Matches: 279, Mismatches: 47, Indels: 22
0.80 0.14 0.06
Matches are distributed among these distances:
141 43 0.15
144 82 0.29
146 1 0.00
150 147 0.53
151 6 0.02
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.26
Consensus pattern (150 bp):
TGCCAATGTGCTGATTCAAGGCCAACAACATTGGACTTAAAGATGGTTAAGGTGCCAATATGCTG
ATTCAAGGCCAACGATATCAGACTTAAAGATAAAGGTGCCAATGTGATGATTCAAGGCCAGCAAC
ATCGAACTTAAAGATGAACG
Found at i:9038610 original size:193 final size:187
Alignment explanation
Indices: 9038372--9038738 Score: 509
Period size: 193 Copynumber: 1.9 Consensus size: 187
9038362 GCTGATGTGT
* *** *
9038372 TGATTCAAGGCCAACGATATTGGACTTAAAGATGGTTAAGGTGCCAATGTGCTGATTCAAGGCCA
1 TGATTAAAGGCCAACGATATTGGACTTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCCA
* *
9038437 ACGATATTGGACTTAAAGATGGAGGTGCCAATGTGATGATTTAAGGCTAGCAACATTGGACTTAA
66 ACGATATTGGACTTAAAGATGAAGGTGCCAATGTGATGATTTAAGGCCAGCAACATTGGACTT--
* *
9038502 AGGTGAAGGTGCCAATGTGCTGATTTAAGGCCAGCAACATTGGACTTAAAGGTGCTAATATGC
129 A----AAGGTGCCAATATGCTGATTCAAGGCCAGCAACATTGGACTTAAAGGTGCTAATATGC
* * **
9038565 TGATTAAAGGCTAGCGATATTGGACTTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGTGA
1 TGATTAAAGGCCAACGATATTGGACTTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCCA
* * * *
9038630 GCGATATTGGACTTATAGGTGAAGGTGCCAATGTGCTGATTTAAGGCCAGCAACATTGGACTTAA
66 ACGATATTGGACTTAAAGATGAAGGTGCCAATGTGATGATTTAAGGCCAGCAACATTGGACTTAA
* *
9038695 AGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA
131 AGGTGCCAATATGCTGATTCAAGGCCAGCAACATTGGACTTAAA
9038739 AAAAGATGCC
Statistics
Matches: 155, Mismatches: 19, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
187 41 0.26
191 1 0.01
193 113 0.73
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.26
Consensus pattern (187 bp):
TGATTAAAGGCCAACGATATTGGACTTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCCA
ACGATATTGGACTTAAAGATGAAGGTGCCAATGTGATGATTTAAGGCCAGCAACATTGGACTTAA
AGGTGCCAATATGCTGATTCAAGGCCAGCAACATTGGACTTAAAGGTGCTAATATGC
Found at i:9038660 original size:144 final size:141
Alignment explanation
Indices: 9038409--9038738 Score: 509
Period size: 144 Copynumber: 2.3 Consensus size: 141
9038399 AAAGATGGTT
* * * *
9038409 AAGGTGCCAATGTGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGGAGGTGCCAATGTGAT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATATGAT
*
9038474 GATTTAAGGCTAGCAACATTGGACTTAAAGGTGAAGGTGCCAATGTGCTGATTTAAGGCCAGCAA
66 GATTCAAGGCTAGCAACATTGGACTTAAAGGTGAAGGTGCCAATGTGCTGATTTAAGGCCAGCAA
9038539 CATTGGACTTA
131 CATTGGACTTA
* * *
9038550 AAGGTGCTAATATGCTGATTAAAGGCTAGCGATATTGGACTTAAAGATGACAAAGGTGCCAATAT
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG---AAGGTGCCAATAT
* * * *
9038615 GCTGATTCAAGG-TGAGCGATATTGGACTTATAGGTGAAGGTGCCAATGTGCTGATTTAAGGCCA
63 GATGATTCAAGGCT-AGCAACATTGGACTTAAAGGTGAAGGTGCCAATGTGCTGATTTAAGGCCA
9038679 GCAACATTGGACTTA
127 GCAACATTGGACTTA
9038694 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA
9038739 AAAAGATGCC
Statistics
Matches: 170, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
141 44 0.26
143 1 0.01
144 125 0.74
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.26
Consensus pattern (141 bp):
AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATATGAT
GATTCAAGGCTAGCAACATTGGACTTAAAGGTGAAGGTGCCAATGTGCTGATTTAAGGCCAGCAA
CATTGGACTTA
Found at i:9038906 original size:28 final size:27
Alignment explanation
Indices: 9038795--9039185 Score: 351
Period size: 27 Copynumber: 14.1 Consensus size: 27
9038785 ATTATGTGCT
*
9038795 TTTGAAGATTGCCACTGCCTTGTGGGC
1 TTTGAAGATTGCCACTGACTTGTGGGC
* * *
9038822 TTTGAAGGTTGCCACTAACTTGTGGAC
1 TTTGAAGATTGCCACTGACTTGTGGGC
* * * *
9038849 TTTGAAGGTTGTCACTAACTTGTGGAC
1 TTTGAAGATTGCCACTGACTTGTGGGC
* * *
9038876 TTTGAAAATGTGCCACTAACTTATGGGC
1 TTTGAAGAT-TGCCACTGACTTGTGGGC
* * * *
9038904 TTTTGAAGGTTGCCACCGATTTGTGGAC
1 -TTTGAAGATTGCCACTGACTTGTGGGC
* *
9038932 TTTGAAGGTTGCCACTGACTTGTGGAC
1 TTTGAAGATTGCCACTGACTTGTGGGC
* * *
9038959 TTTGAAAAGGTGCCACTAACTTGTGGGC
1 TTTGAAGA-TTGCCACTGACTTGTGGGC
*
9038987 TTTTGAAGATTGCCA-TCGATTTGTGGGC
1 -TTTGAAGATTGCCACT-GACTTGTGGGC
* *
9039015 TTTGAAGGTTGCCACTGACTTGTGGAC
1 TTTGAAGATTGCCACTGACTTGTGGGC
* * *
9039042 TTTGAAAAGGTGCCACTAACTTGTGGGC
1 TTTGAAGA-TTGCCACTGACTTGTGGGC
*
9039070 TTTTGAAG-TTGCCA-TCGATTTGTGGGC
1 -TTTGAAGATTGCCACT-GACTTGTGGGC
*
9039097 TTTTGAAGGTTGCCACTGACTTGTGGGC
1 -TTTGAAGATTGCCACTGACTTGTGGGC
*
9039125 TTTTAAAAAGA-TGCCACTGACTTGTGGGC
1 -TTT--GAAGATTGCCACTGACTTGTGGGC
*
9039154 TTTGAAAAGA-TGCCACTAACTTGTGGGC
1 TTTG--AAGATTGCCACTGACTTGTGGGC
9039182 TTTG
1 TTTG
9039186 GAAAGTGAGG
Statistics
Matches: 304, Mismatches: 45, Indels: 29
0.80 0.12 0.08
Matches are distributed among these distances:
26 1 0.00
27 138 0.45
28 123 0.40
29 39 0.13
30 3 0.01
ACGTcount: A:0.21, C:0.17, G:0.28, T:0.34
Consensus pattern (27 bp):
TTTGAAGATTGCCACTGACTTGTGGGC
Found at i:9038913 original size:83 final size:83
Alignment explanation
Indices: 9038804--9039185 Score: 504
Period size: 83 Copynumber: 4.6 Consensus size: 83
9038794 TTTTGAAGAT
** * * * * *
9038804 TGCCACTGCCTTGTGGGC-TTTGAAGGTTGCCACTAACTTGTGGACTTTGAAGGTTGTCACTAAC
1 TGCCACTAACTTGTGGGCTTTTGAAGGTTGCCACTGATTTGTGGGCTTTGAAGGTTGCCACTGAC
*
9038868 TTGTGGACTTTGAAAATG
66 TTGTGGACTTTGAAAAGG
* * *
9038886 TGCCACTAACTTATGGGCTTTTGAAGGTTGCCACCGATTTGTGGACTTTGAAGGTTGCCACTGAC
1 TGCCACTAACTTGTGGGCTTTTGAAGGTTGCCACTGATTTGTGGGCTTTGAAGGTTGCCACTGAC
9038951 TTGTGGACTTTGAAAAGG
66 TTGTGGACTTTGAAAAGG
*
9038969 TGCCACTAACTTGTGGGCTTTTGAAGATTGCCA-TCGATTTGTGGGCTTTGAAGGTTGCCACTGA
1 TGCCACTAACTTGTGGGCTTTTGAAGGTTGCCACT-GATTTGTGGGCTTTGAAGGTTGCCACTGA
9039033 CTTGTGGACTTTGAAAAGG
65 CTTGTGGACTTTGAAAAGG
9039052 TGCCACTAACTTGTGGGCTTTTGAA-GTTGCCA-TCGATTTGTGGGCTTTTGAAGGTTGCCACTG
1 TGCCACTAACTTGTGGGCTTTTGAAGGTTGCCACT-GATTTGTGGGC-TTTGAAGGTTGCCACTG
* * *
9039115 ACTTGTGGGCTTTTAAAAAGA
64 ACTTGTGGAC-TTTGAAAAGG
* * * * *
9039136 TGCCACTGACTTGTGGGC-TTTGAAAAGATGCCACTAACTTGTGGGCTTTG
1 TGCCACTAACTTGTGGGCTTTTG-AAGGTTGCCACTGATTTGTGGGCTTTG
9039186 GAAAGTGAGG
Statistics
Matches: 272, Mismatches: 21, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
82 34 0.12
83 191 0.70
84 31 0.11
85 15 0.06
86 1 0.00
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.34
Consensus pattern (83 bp):
TGCCACTAACTTGTGGGCTTTTGAAGGTTGCCACTGATTTGTGGGCTTTGAAGGTTGCCACTGAC
TTGTGGACTTTGAAAAGG
Found at i:9038959 original size:110 final size:109
Alignment explanation
Indices: 9038786--9039185 Score: 389
Period size: 110 Copynumber: 3.6 Consensus size: 109
9038776 TTGCACCGAA
* * * *
9038786 TTATGTGCTTTTGAAGATTGCCACTGCCTTGTGGGCTTTGAAGGTTGCCACTAACTTGTGGACTT
1 TTATGGGCTTTTGAAGGTTGCCACTGACTTGTGGACTTTGAAGGTTGCCACTAACTTGTGGACTT
*
9038851 TGAAGGTTGTCACTAACTTGTGGAC-TTTGAAAATGTGCCA-CTAAC
66 TGAAGG-TGCCACTAACTTGTGGACTTTTGAAAAT-TGCCATC-AAC
* * *
9038896 TTATGGGCTTTTGAAGGTTGCCACCGATTTGTGGACTTTGAAGGTTGCCACTGACTTGTGGACTT
1 TTATGGGCTTTTGAAGGTTGCCACTGACTTGTGGACTTTGAAGGTTGCCACTAACTTGTGGACTT
* * * *
9038961 TGAAAAGGTGCCACTAACTTGTGGGCTTTTGAAGATTGCCATCGAT
66 TG--AAGGTGCCACTAACTTGTGGACTTTTGAAAATTGCCATCAAC
* *
9039007 TTGTGGGC-TTTGAAGGTTGCCACTGACTTGTGGACTTTGAAAAGG-TGCCACTAACTTGTGGGC
1 TTATGGGCTTTTGAAGGTTGCCACTGACTTGTGGACTTTG--AAGGTTGCCACTAACTTGTGGAC
* * * * ** *
9039070 TTTTGAAGTTGCCA-TCGATTTGTGGGCTTTTGAAGGTTGCCA-CTGAC
64 -TTTGAAGGTGCCACT-AACTTGTGGACTTTTGAAAATTGCCATC-AAC
* * * * * * * *
9039117 TTGTGGGCTTTTAAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGC
1 TTATGGGCTTTT-GAAGGTTGCCACTGACTTGTGGACTTTG-AAGGTTGCCACTAACTTGTGGAC
9039182 TTTG
64 TTTG
9039186 GAAAGTGAGG
Statistics
Matches: 251, Mismatches: 27, Indels: 23
0.83 0.09 0.08
Matches are distributed among these distances:
109 2 0.01
110 130 0.52
111 56 0.22
112 63 0.25
ACGTcount: A:0.21, C:0.17, G:0.28, T:0.34
Consensus pattern (109 bp):
TTATGGGCTTTTGAAGGTTGCCACTGACTTGTGGACTTTGAAGGTTGCCACTAACTTGTGGACTT
TGAAGGTGCCACTAACTTGTGGACTTTTGAAAATTGCCATCAAC
Found at i:9039190 original size:28 final size:28
Alignment explanation
Indices: 9038803--9039191 Score: 328
Period size: 28 Copynumber: 14.0 Consensus size: 28
9038793 CTTTTGAAGA
* *
9038803 TTGCCACTGCCTTGTGGGCTTT-GAAGG
1 TTGCCACTGACTTGTGGGCTTTGGAAAG
* * *
9038830 TTGCCACTAACTTGTGGACTTT-GAAGG
1 TTGCCACTGACTTGTGGGCTTTGGAAAG
* * * *
9038857 TTGTCACTAACTTGTGGACTTT-GAAAA
1 TTGCCACTGACTTGTGGGCTTTGGAAAG
* * * *
9038884 TGTGCCACTAACTTATGGGCTTTTGAAGG
1 T-TGCCACTGACTTGTGGGCTTTGGAAAG
* * * *
9038913 TTGCCACCGATTTGTGGACTTT-GAAGG
1 TTGCCACTGACTTGTGGGCTTTGGAAAG
* *
9038940 TTGCCACTGACTTGTGGACTTTGAAAAG
1 TTGCCACTGACTTGTGGGCTTTGGAAAG
* * *
9038968 GTGCCACTAACTTGTGGGCTTTTG-AAG
1 TTGCCACTGACTTGTGGGCTTTGGAAAG
* *
9038995 ATTGCCA-TCGATTTGTGGGCTTT-GAAGG
1 -TTGCCACT-GACTTGTGGGCTTTGGAAAG
* *
9039023 TTGCCACTGACTTGTGGACTTTGAAAAG
1 TTGCCACTGACTTGTGGGCTTTGGAAAG
* * *
9039051 GTGCCACTAACTTGTGGGCTTTTG-AAG
1 TTGCCACTGACTTGTGGGCTTTGGAAAG
* * *
9039078 TTGCCA-TCGATTTGTGGGCTTTTGAAGG
1 TTGCCACT-GACTTGTGGGCTTTGGAAAG
**
9039106 TTGCCACTGACTTGTGGGCTTTTAAAAAG
1 TTGCCACTGACTTGTGGGC-TTTGGAAAG
* *
9039135 ATGCCACTGACTTGTGGGCTTTGAAAAG
1 TTGCCACTGACTTGTGGGCTTTGGAAAG
* *
9039163 ATGCCACTAACTTGTGGGCTTTGGAAAG
1 TTGCCACTGACTTGTGGGCTTTGGAAAG
9039191 T
1 T
9039192 GAGGAATGCC
Statistics
Matches: 299, Mismatches: 51, Indels: 23
0.80 0.14 0.06
Matches are distributed among these distances:
26 1 0.00
27 119 0.40
28 150 0.50
29 29 0.10
ACGTcount: A:0.21, C:0.17, G:0.28, T:0.34
Consensus pattern (28 bp):
TTGCCACTGACTTGTGGGCTTTGGAAAG
Found at i:9039590 original size:37 final size:37
Alignment explanation
Indices: 9039548--9039628 Score: 153
Period size: 37 Copynumber: 2.2 Consensus size: 37
9039538 AAAGATGAAG
9039548 CACAAATGCATCATGCAAAATAAAATGTTATGAATGT
1 CACAAATGCATCATGCAAAATAAAATGTTATGAATGT
*
9039585 CACAAATGCATCATGCAAAATGAAATGTTATGAATGT
1 CACAAATGCATCATGCAAAATAAAATGTTATGAATGT
9039622 CACAAAT
1 CACAAAT
9039629 ACATGATTGT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.46, C:0.15, G:0.14, T:0.26
Consensus pattern (37 bp):
CACAAATGCATCATGCAAAATAAAATGTTATGAATGT
Found at i:9040660 original size:1 final size:1
Alignment explanation
Indices: 9040654--9040782 Score: 78
Period size: 1 Copynumber: 129.0 Consensus size: 1
9040644 TCGTTGTTTG
* * * * * * * * * * *
9040654 TTTTTTTTATCTTTTTTATTTATTTGTTTTTATTTTTTTGTTTGTTTTTGTTTGTTTTTTTGTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * * * * *
9040719 TTTTTTTGTTGTTTTTTGTTTGTTTTTTGTTTTTGTTTTTGTTTTTTGTTTTTGTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
9040783 GCGGAGGATG
Statistics
Matches: 88, Mismatches: 40, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
1 88 1.00
ACGTcount: A:0.03, C:0.01, G:0.12, T:0.84
Consensus pattern (1 bp):
T
Found at i:9040685 original size:14 final size:13
Alignment explanation
Indices: 9040650--9040780 Score: 94
Period size: 13 Copynumber: 9.9 Consensus size: 13
9040640 CTTTTCGTTG
9040650 TTTGTTTTTTTTA
1 TTTGTTTTTTTTA
*
9040663 TCTT-TTTTATTTA
1 T-TTGTTTTTTTTA
*
9040676 TTTGTTTTTATTTT
1 TTTGTTTTT-TTTA
*
9040690 TTTGTTTGTTTTTG
1 TTTGTTT-TTTTTA
9040704 TTTGTTTTTTTGT-
1 TTTGTTTTTTT-TA
*
9040717 TTT-TTTTTTGTTG
1 TTTGTTTTTT-TTA
*
9040730 TTT-TTTGTTTGTTT
1 TTTGTTT-TTT-TTA
*
9040744 TTTGTTTTTGTT-
1 TTTGTTTTTTTTA
9040756 TTTGTTTTTTGTT-
1 TTTGTTTTTT-TTA
9040769 TTTGTTTTTTTT
1 TTTGTTTTTTTT
9040781 TTGCGGAGGA
Statistics
Matches: 101, Mismatches: 7, Indels: 21
0.78 0.05 0.16
Matches are distributed among these distances:
12 20 0.20
13 42 0.42
14 34 0.34
15 5 0.05
ACGTcount: A:0.03, C:0.01, G:0.12, T:0.84
Consensus pattern (13 bp):
TTTGTTTTTTTTA
Found at i:9040702 original size:32 final size:28
Alignment explanation
Indices: 9040654--9040783 Score: 118
Period size: 30 Copynumber: 4.3 Consensus size: 28
9040644 TCGTTGTTTG
* * *
9040654 TTTTTTTTATCTTTTTTATTTATTTGTTTT
1 TTTTTTTTGT-TTTTTTTTTTGTTT-TTTT
9040684 TATTTTTTTGTTTGTTTTTGTTTGTTTTTTT
1 T-TTTTTTTGTTT-TTTTT-TTTGTTTTTTT
*
9040715 GTTTTTTTT-TTGTTGTTTTTTGTTTGTTTT
1 -TTTTTTTTGTT-TTTTTTTTTGTTT-TTTT
*
9040745 TTGTTTTTGTTTTTGTTTTTTGTTTTTGTT
1 TTTTTTTTGTTTTT-TTTTTTGTTTTT-TT
9040775 TTTTTTTTG
1 TTTTTTTTG
9040784 CGGAGGATGC
Statistics
Matches: 84, Mismatches: 7, Indels: 18
0.77 0.06 0.17
Matches are distributed among these distances:
29 18 0.21
30 35 0.42
31 24 0.29
32 7 0.08
ACGTcount: A:0.03, C:0.01, G:0.12, T:0.84
Consensus pattern (28 bp):
TTTTTTTTGTTTTTTTTTTTGTTTTTTT
Found at i:9040702 original size:33 final size:33
Alignment explanation
Indices: 9040676--9040782 Score: 125
Period size: 32 Copynumber: 3.2 Consensus size: 33
9040666 TTTTTATTTA
9040676 TTTGTTTTTATTTTT-TTGTTTGTTTTTGTTTGTTTT
1 TTTGTTTTT-TTTTTGTTGTTTG--TTTGTTTG-TTT
9040712 TTTGTTTTTTTTTTGTTGTTT-TTTGTTTGTTT
1 TTTGTTTTTTTTTTGTTGTTTGTTTGTTTGTTT
*
9040744 TTTGTTTTTGTTTTTGTTTTTTG-TT-TTTGTTT
1 TTTGTTTTT-TTTTTGTTGTTTGTTTGTTTGTTT
9040776 TTT-TTTT
1 TTTGTTTT
9040783 GCGGAGGATG
Statistics
Matches: 67, Mismatches: 1, Indels: 11
0.85 0.01 0.14
Matches are distributed among these distances:
31 4 0.06
32 22 0.33
33 21 0.31
35 5 0.07
36 15 0.22
ACGTcount: A:0.01, C:0.00, G:0.14, T:0.85
Consensus pattern (33 bp):
TTTGTTTTTTTTTTGTTGTTTGTTTGTTTGTTT
Found at i:9040713 original size:44 final size:41
Alignment explanation
Indices: 9040647--9040783 Score: 154
Period size: 44 Copynumber: 3.2 Consensus size: 41
9040637 ACCCTTTTCG
*
9040647 TTGTTTGTTTTT-TTTATCTTTTTTATTTATTTGTTTTTATTTTT
1 TTGTTTGTTTTTGTTT-T-TTTTTTGTTT-TTTGTTTTT-TTTTT
9040691 TTGTTTGTTTTTGTTTGTTTTTTTGTTTTTT-TTTTGTTGTTTT
1 TTGTTTGTTTTTGTTT-TTTTTTTGTTTTTTGTTTT-TT-TTTT
9040734 TTGTTTGTTTTTTGTTTTTGTTTTTGTTTTTTGTTTTTGTTTTT
1 TTGTTTG-TTTTTGTTTTT-TTTTTGTTTTTTGTTTTT-TTTTT
9040778 TT-TTTG
1 TTGTTTG
9040784 CGGAGGATGC
Statistics
Matches: 84, Mismatches: 2, Indels: 15
0.83 0.02 0.15
Matches are distributed among these distances:
42 5 0.06
43 21 0.25
44 49 0.58
45 9 0.11
ACGTcount: A:0.03, C:0.01, G:0.13, T:0.83
Consensus pattern (41 bp):
TTGTTTGTTTTTGTTTTTTTTTTGTTTTTTGTTTTTTTTTT
Found at i:9040772 original size:19 final size:19
Alignment explanation
Indices: 9040676--9040782 Score: 132
Period size: 18 Copynumber: 5.8 Consensus size: 19
9040666 TTTTTATTTA
* *
9040676 TTTGTTTTTATTTTTT-TG
1 TTTGTTTTTGTTTTTTGTT
*
9040694 TTTGTTTTTGTTTGTT-TT
1 TTTGTTTTTGTTTTTTGTT
*
9040712 TTTGTTTTTTTTTTGTTGTT
1 TTTGTTTTTGTTTT-TTGTT
*
9040732 TTT-TGTTTGTTTTTTGTT
1 TTTGTTTTTGTTTTTTGTT
9040750 TTTGTTTTTGTTTTTTGTT
1 TTTGTTTTTGTTTTTTGTT
9040769 TTTGTTTTT-TTTTT
1 TTTGTTTTTGTTTTT
9040783 GCGGAGGATG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
18 40 0.51
19 33 0.42
20 5 0.06
ACGTcount: A:0.01, C:0.00, G:0.14, T:0.85
Consensus pattern (19 bp):
TTTGTTTTTGTTTTTTGTT
Found at i:9046846 original size:13 final size:13
Alignment explanation
Indices: 9046828--9046852 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9046818 CATAAAGTGT
9046828 TGTATCGATACAA
1 TGTATCGATACAA
9046841 TGTATCGATACA
1 TGTATCGATACA
9046853 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:9046850 original size:33 final size:33
Alignment explanation
Indices: 9046808--9046874 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
9046798 TTCAACGATT
9046808 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*** *
9046841 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
9046874 T
1 T
9046875 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:9060854 original size:1 final size:1
Alignment explanation
Indices: 9060848--9060892 Score: 54
Period size: 1 Copynumber: 45.0 Consensus size: 1
9060838 CGTCCTCCAC
* * * *
9060848 AAAAAAAAAAACAAAAAAAACAAAAACAAAAAAAAACAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
9060893 GGGTCCGGAT
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
1 36 1.00
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:9060865 original size:9 final size:9
Alignment explanation
Indices: 9060851--9060892 Score: 61
Period size: 9 Copynumber: 4.9 Consensus size: 9
9060841 CCTCCACAAA
9060851 AAAAAAAAC
1 AAAAAAAAC
9060860 AAAAAAAAC
1 AAAAAAAAC
*
9060869 -AAAAACA-
1 AAAAAAAAC
9060876 AAAAAAAAC
1 AAAAAAAAC
9060885 AAAAAAAA
1 AAAAAAAA
9060893 GGGTCCGGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
8 12 0.41
9 17 0.59
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (9 bp):
AAAAAAAAC
Found at i:9060872 original size:15 final size:16
Alignment explanation
Indices: 9060848--9060889 Score: 70
Period size: 16 Copynumber: 2.8 Consensus size: 16
9060838 CGTCCTCCAC
9060848 AAAAAA-AAAAAC-AA
1 AAAAAACAAAAACAAA
9060862 AAAAAACAAAAACAAA
1 AAAAAACAAAAACAAA
9060878 AAAAAACAAAAA
1 AAAAAACAAAAA
9060890 AAAGGGTCCG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.23
15 6 0.23
16 14 0.54
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (16 bp):
AAAAAACAAAAACAAA
Found at i:9062396 original size:61 final size:60
Alignment explanation
Indices: 9062268--9062460 Score: 241
Period size: 61 Copynumber: 3.2 Consensus size: 60
9062258 TTCTTCACCC
* **
9062268 TTCAAAAGCCCACAAGTCAGTGGCATCTTTTTC-AAAGCCCACAAGTCAGTGGCATCTTTT
1 TTCAAAAGCCCACAAGTCAGTGGCATCTTTTTCAAAAGCCCACAAGTTAGTGGCA-CCCTT
*
9062328 TTC-AAAGCCTACAAGTCAGTGGCATCTTTTTTCAAAAGCCCACAAGTTAGTGGCACCCTT
1 TTCAAAAGCCCACAAGTCAGTGGCATC-TTTTTCAAAAGCCCACAAGTTAGTGGCACCCTT
* * * * * *
9062388 TTCAAAAGCCCACAAGTTAGTGGCACCCTTTTCAGAAGCACACAAGTTGGT-GCAACCC-T
1 TTCAAAAGCCCACAAGTCAGTGGCATCTTTTTCAAAAGCCCACAAGTTAGTGGC-ACCCTT
9062447 TTCAAAAGCCCACA
1 TTCAAAAGCCCACA
9062461 TAAGTTGGTG
Statistics
Matches: 118, Mismatches: 11, Indels: 9
0.86 0.08 0.07
Matches are distributed among these distances:
59 39 0.33
60 39 0.33
61 40 0.34
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (60 bp):
TTCAAAAGCCCACAAGTCAGTGGCATCTTTTTCAAAAGCCCACAAGTTAGTGGCACCCTT
Found at i:9062435 original size:30 final size:30
Alignment explanation
Indices: 9062268--9062460 Score: 214
Period size: 30 Copynumber: 6.5 Consensus size: 30
9062258 TTCTTCACCC
* *
9062268 TTCAAAAGCCCACAAGTCAGTGGCATCTTT
1 TTCAAAAGCCCACAAGTCAGTGGCACCCTT
**
9062298 TTC-AAAGCCCACAAGTCAGTGGCATCTTTT
1 TTCAAAAGCCCACAAGTCAGTGGCA-CCCTT
* **
9062328 TTC-AAAGCCTACAAGTCAGTGGCATCTTTT
1 TTCAAAAGCCCACAAGTCAGTGGCA-CCCTT
*
9062358 TTCAAAAGCCCACAAGTTAGTGGCACCCTT
1 TTCAAAAGCCCACAAGTCAGTGGCACCCTT
*
9062388 TTCAAAAGCCCACAAGTTAGTGGCACCCTT
1 TTCAAAAGCCCACAAGTCAGTGGCACCCTT
* * **
9062418 TTCAGAAGCACACAAGTTGGT-GCAACCC-T
1 TTCAAAAGCCCACAAGTCAGTGGC-ACCCTT
9062447 TTCAAAAGCCCACA
1 TTCAAAAGCCCACA
9062461 TAAGTTGGTG
Statistics
Matches: 148, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
29 36 0.24
30 93 0.63
31 19 0.13
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (30 bp):
TTCAAAAGCCCACAAGTCAGTGGCACCCTT
Found at i:9062593 original size:43 final size:43
Alignment explanation
Indices: 9062480--9063000 Score: 376
Period size: 52 Copynumber: 11.0 Consensus size: 43
9062470 GGCATCTTCT
*
9062480 TCTAAGTCCAATATCGCTGGCCTTGAATTAGCATATTGGCACCTTC
1 TCTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-C--C
* * *
9062526 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC
1 -TC--TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC
* * *
9062572 TCCAAGTCCAATATCGTTGGCCTTGAATCAGCATGTTGGCACCCTC
1 TCTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA--C-C
* * *
9062618 ATCTTTTAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC
1 -TC---TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC
* *
9062665 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTC
1 TCTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGC-AC-----C
*
9062714 ATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGTCTTTGTC
1 -TC--TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGC-AC-----C
* *
9062766 ATCTTTAAGCCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACC
1 -TC--TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC
* * * * *
9062812 TTTAAGCCCAATGTCGCTGGCCTTGAATCAACACATTGGCACC
1 TCTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC
* *
9062855 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTC
1 TCTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGC-AC-----C
* *
9062904 ATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCGTCTTTGTC
1 -TC--TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGC-AC-----C
*
9062956 ATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCAC
1 -TC--TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAC
9063001 TTTCATCTTT
Statistics
Matches: 407, Mismatches: 40, Indels: 50
0.82 0.08 0.10
Matches are distributed among these distances:
43 143 0.35
44 2 0.00
45 4 0.01
46 4 0.01
47 5 0.01
48 2 0.00
49 37 0.09
50 35 0.09
51 2 0.00
52 173 0.43
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.31
Consensus pattern (43 bp):
TCTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC
Found at i:9062742 original size:52 final size:51
Alignment explanation
Indices: 9062664--9063012 Score: 437
Period size: 52 Copynumber: 7.1 Consensus size: 51
9062654 ACATTGGCAC
9062664 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCG-CTTTGTCAT
9062716 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGTCTTTGTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCG-CTTTGTCAT
* * *
9062768 CTTTAAGCCCAATGTCGCTGGCCTTGAATCAGCATATT---G----G-CAC
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCTTTGTCAT
* * * * *
9062811 CTTTAAGCCCAATGTCGCTGGCCTTGAATCAACACATT---G----G-CAC
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCTTTGTCAT
9062854 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCG-CTTTGTCAT
*
9062906 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCGTCTTTGTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCG-CTTTGTCAT
* *
9062958 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCAC-TT-TCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCTTTGTCAT
9063007 CTTTAA
1 CTTTAA
9063013 TATTCCTAAG
Statistics
Matches: 272, Mismatches: 16, Indels: 21
0.88 0.05 0.07
Matches are distributed among these distances:
43 77 0.28
44 1 0.00
46 1 0.00
49 11 0.04
50 2 0.01
51 2 0.01
52 178 0.65
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.34
Consensus pattern (51 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCTTTGTCAT
Found at i:9062835 original size:22 final size:22
Alignment explanation
Indices: 9062768--9062835 Score: 52
Period size: 22 Copynumber: 3.1 Consensus size: 22
9062758 TCTTTGTCAT
9062768 CTTTAAGCCCAATGTCGCTGGC
1 CTTTAAGCCCAATGTCGCTGGC
* * * * *
9062790 CTTGAATCAGCATAT-TGGC--AC
1 CTTTAAGC-CCA-ATGTCGCTGGC
9062811 CTTTAAGCCCAATGTCGCTGGC
1 CTTTAAGCCCAATGTCGCTGGC
9062833 CTT
1 CTT
9062836 GAATCAACAC
Statistics
Matches: 31, Mismatches: 10, Indels: 10
0.61 0.20 0.20
Matches are distributed among these distances:
19 2 0.06
20 5 0.16
21 7 0.23
22 10 0.32
23 5 0.16
24 2 0.06
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.29
Consensus pattern (22 bp):
CTTTAAGCCCAATGTCGCTGGC
Found at i:9062849 original size:190 final size:192
Alignment explanation
Indices: 9062482--9063000 Score: 769
Period size: 190 Copynumber: 2.8 Consensus size: 192
9062472 CATCTTCTTC
* * *
9062482 TAAGTCCAATATCGCTGGCCTTGAATTAGCATATTGGCACC--T-TCATCTTTAAGTCCAATGTA
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATATA
* * * *
9062544 GCTGGCCTTGAATCAGCACATTGGC-AC-----C-TC--CAAGTCCAATATCGTTGGCCTTGAAT
66 GCTGGCCTTGAATCAGCATATTGGCGTCTTTGTCATCTTTAAGTCCAATATCGCTGGCCTTGAAT
* *
9062600 CAGCATGTTGGCACCCTCATCTTTTAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC
131 CAGCATATTGGCA----CA-CTTTTAAGCCCAATGTCGCTGGCCTTGAATCAACACATTGGCACC
9062665 TT
191 TT
*
9062667 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATATC
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATATA
* *
9062732 GCTGGCCTTGAATCAGCATATTGGCGTCTTTGTCATCTTTAAGCCCAATGTCGCTGGCCTTGAAT
66 GCTGGCCTTGAATCAGCATATTGGCGTCTTTGTCATCTTTAAGTCCAATATCGCTGGCCTTGAAT
9062797 CAGCATATTGGCAC-C-TTTAAGCCCAATGTCGCTGGCCTTGAATCAACACATTGGCACCTT
131 CAGCATATTGGCACACTTTTAAGCCCAATGTCGCTGGCCTTGAATCAACACATTGGCACCTT
*
9062857 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATATT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATATA
9062922 GCTGGCCTTGAATCAGCATATTGGCGTCTTTGTCATCTTTAAGTCCAATATCGCTGGCCTTGAAT
66 GCTGGCCTTGAATCAGCATATTGGCGTCTTTGTCATCTTTAAGTCCAATATCGCTGGCCTTGAAT
*
9062987 CAGCACATTGGCAC
131 CAGCATATTGGCAC
9063001 TTTCATCTTT
Statistics
Matches: 306, Mismatches: 16, Indels: 19
0.90 0.05 0.06
Matches are distributed among these distances:
185 39 0.13
187 1 0.00
188 42 0.14
189 1 0.00
190 184 0.60
191 1 0.00
193 1 0.00
194 1 0.00
195 2 0.01
197 34 0.11
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.31
Consensus pattern (192 bp):
TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATATA
GCTGGCCTTGAATCAGCATATTGGCGTCTTTGTCATCTTTAAGTCCAATATCGCTGGCCTTGAAT
CAGCATATTGGCACACTTTTAAGCCCAATGTCGCTGGCCTTGAATCAACACATTGGCACCTT
Found at i:9063865 original size:13 final size:13
Alignment explanation
Indices: 9063847--9063871 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9063837 CATAAAGTGT
9063847 TGTATCGATACAG
1 TGTATCGATACAG
9063860 TGTATCGATACA
1 TGTATCGATACA
9063872 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:9063869 original size:33 final size:33
Alignment explanation
Indices: 9063827--9063891 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
9063817 TTCAACGATT
9063827 TGTATCGATACATAAAGTGTTGTATCGATACAG
1 TGTATCGATACATAAAGTGTTGTATCGATACAG
*** *
9063860 TGTATCGATACATATTTTTTTGTATCGATACA
1 TGTATCGATACATAAAGTGTTGTATCGATACA
9063892 ATTTAAGCTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.31, C:0.12, G:0.17, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAG
Found at i:9063952 original size:13 final size:13
Alignment explanation
Indices: 9063934--9063958 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9063924 ATCACTTAAA
9063934 TGTATCGATACAT
1 TGTATCGATACAT
9063947 TGTATCGATACA
1 TGTATCGATACA
9063959 CTAATCTCTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:9064023 original size:52 final size:52
Alignment explanation
Indices: 9063967--9064095 Score: 213
Period size: 52 Copynumber: 2.5 Consensus size: 52
9063957 CACTAATCTC
* *
9063967 TGTATCGATACATGCAGGCAAATTTACCCAGCTGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTACCCAGATGTATCGATACACTATAAAA
**
9064019 TGTATCGATACATGCAGGCAAATTTACCCAGATGTATCGATACACTATTCAA
1 TGTATCGATACATGCAGGCAAATTTACCCAGATGTATCGATACACTATAAAA
*
9064071 TGTATCGATACATACAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
9064096 TCATATTTCG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 72 1.00
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTACCCAGATGTATCGATACACTATAAAA
Found at i:9071634 original size:20 final size:20
Alignment explanation
Indices: 9071555--9071634 Score: 79
Period size: 20 Copynumber: 3.8 Consensus size: 20
9071545 AATGTCCAAA
*
9071555 ATGTATCGATACATGTTTCT
1 ATGTATCGATACATTTTTCT
* *
9071575 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACAT-T----TTTCT
9071600 ATGTATCGATACATTTTTCT
1 ATGTATCGATACATTTTTCT
*
9071620 TTGTATCGATACATT
1 ATGTATCGATACATT
9071635 GTATCGATAC
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
20 31 0.63
24 1 0.02
25 17 0.35
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCT
Found at i:9071638 original size:13 final size:13
Alignment explanation
Indices: 9071620--9071658 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
9071610 ACATTTTTCT
9071620 TTGTATCGATACA
1 TTGTATCGATACA
9071633 TTGTATCGATACA
1 TTGTATCGATACA
*
9071646 CTGTATCGATACA
1 TTGTATCGATACA
9071659 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:9074206 original size:13 final size:13
Alignment explanation
Indices: 9074188--9074213 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
9074178 TACAGCAAGT
9074188 ATGTATCGATACA
1 ATGTATCGATACA
9074201 ATGTATCGATACA
1 ATGTATCGATACA
9074214 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:9085330 original size:13 final size:13
Alignment explanation
Indices: 9085312--9085339 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
9085302 ATACAAAGAT
9085312 CAATGTATCGATA
1 CAATGTATCGATA
9085325 CAATGTATCGATA
1 CAATGTATCGATA
9085338 CA
1 CA
9085340 TTGAATAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:9085336 original size:33 final size:33
Alignment explanation
Indices: 9085294--9085356 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
9085284 AAATTCCCAG
9085294 ATGTATCGATACAAAG-ATCAATGTATCGATACA
1 ATGTATCGATACAAAGAAT-AATGTATCGATACA
**
9085327 ATGTATCGATACATTGAATAATGTATCGAT
1 ATGTATCGATACAAAGAATAATGTATCGAT
9085357 TCATTTCCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
33 25 0.93
34 2 0.07
ACGTcount: A:0.40, C:0.13, G:0.16, T:0.32
Consensus pattern (33 bp):
ATGTATCGATACAAAGAATAATGTATCGATACA
Found at i:9087514 original size:156 final size:153
Alignment explanation
Indices: 9087230--9088232 Score: 862
Period size: 155 Copynumber: 6.5 Consensus size: 153
9087220 TTATTCATCA
* * * * *
9087230 TTTTAAGTCCTTTAGGGGTACCGAGATACTTTCACGTCGAAGGTATCCCTTAGGGGTATTTTTGT
1 TTTTAAGTCCTTTAGGGGTA-CGAGATACTTTCACGTCGAAAGTATCCCCTAAGGGCATTTTCGT
* ** *
9087295 AATTTTTCAGAATCGAGTCCTAGGTCATCACCGGGTCTGTTTTTATGCTGAAGGTGGGTATTTAG
65 AATTTTTCAGAACCGAGTCCTAGGTCATCACCGGGTCTACTTTTATGCTGAAGGTGGATATTTAG
* *
9087360 GATAGGTTCATCCCTTTTATAGTCTT
130 GATAGGTTCA-CCCTTCTATA-TCCT
* * * * * *
9087386 TTTTAAGTCCTTTAGGGATACAAAGATACTTTCACGTTGAAAATATCCCTTAAGGGCATTTTCAT
1 TTTTAAGTCCTTTAGGGGTAC-GAGATACTTTCACGTCGAAAGTATCCCCTAAGGGCATTTTCGT
* * * *
9087451 AATTTTTTAGAACCGAGTCCTACGTCATCACCGGGTCCACTTTTATGCTGAAGGTGGATATTTAA
65 AATTTTTCAGAACCGAGTCCTAGGTCATCACCGGGTCTACTTTTATGCTGAAGGTGGATATTTAG
* *
9087516 GATAGGTTCACCCTTTTATAGTCTT
130 GATAGGTTCACCCTTCTATA-TCCT
* * * * * ** *
9087541 TTTTAAGTCCTTTAGGGGTACCAAAATAGTTTCACATCGAAGGTATCCCCT-AGAGTTATTTTTG
1 TTTTAAGTCCTTTAGGGGTA-CGAGATACTTTCACGTCGAAAGTATCCCCTAAG-GGCATTTTCG
* * * *** * * *
9087605 TAATTTTTCAAAATCGAGTCCCAGGTCATCATTAGGTCT-TTTTTTTGCTGAAGGTGGGTATTTA
64 TAATTTTTCAGAACCGAGTCCTAGGTCATCACCGGGTCTACTTTTATGCTGAAGGTGGATATTTA
* *
9087669 GGATAGGTTCACCCATTTTATATCTT
129 GGATAGGTTCACCC-TTCTATATCCT
** * * * *
9087695 TTTTAAGTCCTTTAAAGGCATCGAGATACTTTCATGTC-AAATGTATCCCCCTAAAGGTATTTTC
1 TTTTAAGTCCTTTAGGGGTA-CGAGATACTTTCACGTCGAAA-GTAT-CCCCTAAGGGCATTTTC
* * * * * * * *
9087759 GTAATTTTTTTAGAATCGTA-TCCTAAGTTATCACCGGGTCTGCTTTCATGCCGAATGTGGATAT
63 GTAA-TTTTTCAGAACCG-AGTCCTAGGTCATCACCGGGTCTACTTTTATGCTGAAGGTGGATAT
* *
9087823 TTAGAATAGGTTCATCCCATCTATATCCT
126 TTAGGATAGGTTCA-CCCTTCTATATCCT
* * * *
9087852 TTTTAAGTCCTTTAAGGGTGT-CGGGATACTTTCATGTTGAAAGTAATCCTCTAAGGGCATTTTC
1 TTTTAAGTCCTTT-AGGG-GTACGAGATACTTTCACGTCGAAAGT-ATCCCCTAAGGGCATTTTC
* * * * * *
9087916 ATAATTTTTTTAG-ACCTGTGTCCTAGAT--TCACCGGGTCTACTTTCATGCCGAAGGTGGATAT
63 GTAA-TTTTTCAGAACC-GAGTCCTAGGTCATCACCGGGTCTACTTTTATGCTGAAGGTGGATAT
* *
9087978 TTAGTATAGGTTCA-CCTATCTATATCCC
126 TTAGGATAGGTTCACCCT-TCTATATCCT
* * * **
9088006 TTTTAAGTCCTTTAGGGGCACCGGGATACTTTCACGTCGAAGGTATCCCCTAAATGCATTTTCGT
1 TTTTAAGTCCTTTAGGGGTA-CGAGATACTTTCACGTCGAAAGTATCCCCTAAGGGCATTTTCGT
* ** * * * *
9088071 AATTTTTCAAAACTAAGTCCTAGGTTATCGCCGGGTCTTCTTTTATG-TCGAAGGT-AAGTATTT
65 AATTTTTCAGAACCGAGTCCTAGGTCATCACCGGGTCTACTTTTATGCT-GAAGGTGGA-TATTT
**
9088134 AGGATAGGTTCATTTCTTCTATACTCCT
128 AGGATAGGTTCA-CCCTTCTATA-TCCT
* * * * * *
9088162 TTTTAAGTCCTTTAGGGGTATTG-GGTACTTTTACGTCGAAGGTATCCCGTAAAGGCATTTGT-G
1 TTTTAAGTCCTTTAGGGGTA-CGAGATACTTTCACGTCGAAAGTATCCCCTAAGGGCATTT-TCG
9088225 TAATTTTT
64 TAATTTTT
9088233 TTTGAACTAA
Statistics
Matches: 698, Mismatches: 120, Indels: 59
0.80 0.14 0.07
Matches are distributed among these distances:
152 15 0.02
153 30 0.04
154 155 0.22
155 209 0.30
156 177 0.25
157 101 0.14
158 10 0.01
159 1 0.00
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.39
Consensus pattern (153 bp):
TTTTAAGTCCTTTAGGGGTACGAGATACTTTCACGTCGAAAGTATCCCCTAAGGGCATTTTCGTA
ATTTTTCAGAACCGAGTCCTAGGTCATCACCGGGTCTACTTTTATGCTGAAGGTGGATATTTAGG
ATAGGTTCACCCTTCTATATCCT
Found at i:9087794 original size:311 final size:311
Alignment explanation
Indices: 9087230--9087870 Score: 832
Period size: 311 Copynumber: 2.1 Consensus size: 311
9087220 TTATTCATCA
* * * * *
9087230 TTTTAAGTCCTTTAGGGGTACCGAGATACTTTCACGTCGAAGGTATCCCTTAGGGGTATTTTTGT
1 TTTTAAGTCCTTTAGGGGTACCAAAATACTTTCACATCGAAGGTATCCCCTAGAGGTATTTTTGT
* * *
9087295 AATTTTTCAGAATCGAGTCCTAGGTCATCACCGGGTCTGTTTTTATGCTGAAGGTGGGTATTTAG
66 AATTTTTCAAAATCGAGTCCCAGGTCATCACCAGGTCTGTTTTTATGCTGAAGGTGGGTATTTAG
* *
9087360 GATAGGTTCATCCCTTTTATAGTCTTTTTTAAGTCCTTTAGGGATACAAAGATACTTTCACGTTG
131 GATAGGTTCATCCCTTTTATAGTCTTTTTTAAGTCCTTTAGGCATACAAAGATACTTTCACGTTC
* * *
9087425 AAAATATCCCTTAAGGGCATTTTCATAATTTTTTAGAACCGAGTCCTACGTCATCACCGGGTCCA
196 AAAATATCCCCTAAAGGCATTTTCATAATTTTTTAGAACCGAGTCCTAAGTCATCACCGGGTCCA
* * * * *
9087490 CTTTTATGCTGAAGGTGGATATTTA-AGATAGGTTCA-CCCTTTTATAGTCTT
261 CTTTCATGCCGAAGGTGGATATTTAGA-ATAGGTTCATCCCATCTATA-TCCT
* *
9087541 TTTTAAGTCCTTTAGGGGTACCAAAATAGTTTCACATCGAAGGTATCCCCTAGAGTTATTTTTGT
1 TTTTAAGTCCTTTAGGGGTACCAAAATACTTTCACATCGAAGGTATCCCCTAGAGGTATTTTTGT
** *
9087606 AATTTTTCAAAATCGAGTCCCAGGTCATCATTAGGTCT-TTTTTTTGCTGAAGGTGGGTATTTAG
66 AATTTTTCAAAATCGAGTCCCAGGTCATCACCAGGTCTGTTTTTATGCTGAAGGTGGGTATTTAG
* *
9087670 GATAGGTTCA-CCCATTTTATA-TCTTTTTTAAGTCCTTTAAAGGCAT-C-GAGATACTTTCATG
131 GATAGGTTCATCCC-TTTTATAGTCTTTTTTAAGTCCTTT--AGGCATACAAAGATACTTTCACG
* * * * *
9087731 -TCAAATGTATCCCCCTAAAGGTATTTTCGTAATTTTTTTAGAATCGTA-TCCTAAGTTATCACC
193 TTCAAA-ATAT-CCCCTAAAGGCATTTTCATAA-TTTTTTAGAACCG-AGTCCTAAGTCATCACC
** *
9087794 GGGTCTGCTTTCATGCCGAATGTGGATATTTAGAATAGGTTCATCCCATCTATATCCT
254 GGGTCCACTTTCATGCCGAAGGTGGATATTTAGAATAGGTTCATCCCATCTATATCCT
*
9087852 TTTTAAGTCCTTTAAGGGT
1 TTTTAAGTCCTTTAGGGGT
9087871 GTCGGGATAC
Statistics
Matches: 287, Mismatches: 34, Indels: 18
0.85 0.10 0.05
Matches are distributed among these distances:
308 4 0.01
309 35 0.12
310 60 0.21
311 178 0.62
312 10 0.03
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.39
Consensus pattern (311 bp):
TTTTAAGTCCTTTAGGGGTACCAAAATACTTTCACATCGAAGGTATCCCCTAGAGGTATTTTTGT
AATTTTTCAAAATCGAGTCCCAGGTCATCACCAGGTCTGTTTTTATGCTGAAGGTGGGTATTTAG
GATAGGTTCATCCCTTTTATAGTCTTTTTTAAGTCCTTTAGGCATACAAAGATACTTTCACGTTC
AAAATATCCCCTAAAGGCATTTTCATAATTTTTTAGAACCGAGTCCTAAGTCATCACCGGGTCCA
CTTTCATGCCGAAGGTGGATATTTAGAATAGGTTCATCCCATCTATATCCT
Found at i:9088484 original size:93 final size:95
Alignment explanation
Indices: 9088336--9088521 Score: 304
Period size: 93 Copynumber: 2.0 Consensus size: 95
9088326 TAGTGTCGAT
* *
9088336 TGTCGCAACGTGCGCTCGGACCCCGGTGATAGGGACAGATGAGGCACGCCCGACTTAATATCCCT
1 TGTCGCAACGTGCGCTCGGACCCCGGCGATAGGGACAAATGAGGCACGCCCGACTTAATATCCCT
9088401 CGCGATTGGGGATTTCCATGGCATGATGAG
66 CGCGATTGGGGATTTCCATGGCATGATGAG
* *
9088431 TGTCGTAACGTGCGCTC-GACCCCGGCGATAGGG-CAAATGAGGCACGCTCGACTTAATATCCCT
1 TGTCGCAACGTGCGCTCGGACCCCGGCGATAGGGACAAATGAGGCACGCCCGACTTAATATCCCT
**
9088494 CGCGATTGGGGATTTCTGTGGCATGATG
66 CGCGATTGGGGATTTCCATGGCATGATG
9088522 GGAAATGTGT
Statistics
Matches: 85, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
93 54 0.64
94 15 0.18
95 16 0.19
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (95 bp):
TGTCGCAACGTGCGCTCGGACCCCGGCGATAGGGACAAATGAGGCACGCCCGACTTAATATCCCT
CGCGATTGGGGATTTCCATGGCATGATGAG
Found at i:9091593 original size:52 final size:52
Alignment explanation
Indices: 9091508--9091632 Score: 214
Period size: 52 Copynumber: 2.4 Consensus size: 52
9091498 ATATGAAAAG
* * *
9091508 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAACT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
*
9091560 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
9091612 TTGCCTGCATGTATCGATACA
1 TTGCCTGCATGTATCGATACA
9091633 AAGATTAGTG
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 69 1.00
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.36
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
Found at i:9091645 original size:52 final size:52
Alignment explanation
Indices: 9091508--9091652 Score: 202
Period size: 52 Copynumber: 2.8 Consensus size: 52
9091498 ATATGAAAAG
* * * *
9091508 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAACT
1 TTGCCTGCATGTATCGATACAATTATTAGTGTATCGATACATCTGGGCAAAT
* *
9091560 TTGCCTGCATGTATCGATAC-ATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACAATTAT-TAGTGTATCGATACATCTGGGCAAAT
**
9091612 TTGCCTGCATGTATCGATACAAAGATTAGTGTATCGATACA
1 TTGCCTGCATGTATCGATACAATTATTAGTGTATCGATACA
9091653 ATGTATCGAT
Statistics
Matches: 81, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
51 2 0.02
52 77 0.95
53 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACAATTATTAGTGTATCGATACATCTGGGCAAAT
Found at i:9091659 original size:13 final size:13
Alignment explanation
Indices: 9091641--9091665 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9091631 CAAAGATTAG
9091641 TGTATCGATACAA
1 TGTATCGATACAA
9091654 TGTATCGATACA
1 TGTATCGATACA
9091666 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:9091749 original size:13 final size:13
Alignment explanation
Indices: 9091731--9091755 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9091721 ACAAAAAATA
9091731 TGTATCGATACAT
1 TGTATCGATACAT
9091744 TGTATCGATACA
1 TGTATCGATACA
9091756 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:9091751 original size:32 final size:33
Alignment explanation
Indices: 9091710--9091775 Score: 98
Period size: 32 Copynumber: 2.0 Consensus size: 33
9091700 AGTAGCTTAA
9091710 ATTGTATCGATACAA-AAAATATGTATCGATAC
1 ATTGTATCGATACAACAAAATATGTATCGATAC
***
9091742 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAACAAAATATGTATCGATAC
9091775 A
1 A
9091776 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 15 0.50
33 15 0.50
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.35
Consensus pattern (33 bp):
ATTGTATCGATACAACAAAATATGTATCGATAC
Found at i:9092413 original size:67 final size:68
Alignment explanation
Indices: 9092291--9092417 Score: 175
Period size: 67 Copynumber: 1.9 Consensus size: 68
9092281 ATTGGGTTTT
* * *
9092291 AAAGATGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATG
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGAAGATG
9092356 AGA
66 AGA
* * ** *
9092359 AAAG-TGATAAAGATGCCAATATGTTGATTCACGGCCAACGCTATTGGGCTTAAAGATGA
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGA
9092418 GAAAAAGGAT
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
67 47 0.92
68 4 0.08
ACGTcount: A:0.38, C:0.13, G:0.25, T:0.24
Consensus pattern (68 bp):
AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGAAGATG
AGA
Found at i:9092535 original size:43 final size:43
Alignment explanation
Indices: 9092474--9093530 Score: 328
Period size: 49 Copynumber: 23.1 Consensus size: 43
9092464 TAAAGATGGA
*
9092474 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
* **
9092517 AAAGGTGCCAATGTGCTGATTCACGGCCAGCTACGTTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
9092560 AAAGGTGAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
1 -AA----AGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
9092608 AAAGATGAAAGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGTCTTAAAGAT
1 -AA-A-G---GTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGAC-T-----T
* *
9092663 AAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
* * * * * * *
9092706 AAAGATG-AAGATGAGAAAAGTGA-TAAAGATGCCA-ATATGTT-GA-TT
1 AAAGGTGCCA-ATGTG----CTGATTCAAG--GCCAGCTATATTGGACTT
* * * * * * * **
9092751 -CACG-GCCAA--CGCT-ATT--GGGCTTA--AAGA-TGAGA-AA
1 AAAGGTGCCAATGTGCTGATTCAAGGC-CAGCTATATTG-GACTT
* * * * *
9092785 AAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGAT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGAC-T-----T
*
9092834 GGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 ---AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
* **
9092880 AAAGGTGCCAATGTGCTGATTCACGGCCAGCTACGTTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
*
9092923 AAAGGTGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 -AA----AGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
9092971 AAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGTCTTAAAGAT
1 ----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGAC-T-----T
* *
9093026 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
* * * * * *
9093069 AATGGTG--AAGGTG-AGAAAAGTGATAAAGATGCCA-ATATGTT-GA-TT
1 AAAGGTGCCAATGTGCTG---A-T--TCAAG--GCCAGCTATATTGGACTT
* * * * * * * * **
9093114 -CACG-GCCAA--CGAT-ATT--GGGCTTA--AAGA-TGAGA-AA
1 AAAGGTGCCAATGTGCTGATTCAAGGC-CAGCTATATTG-GACTT
* * * * *
9093148 AAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGAT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGAC-T-----T
*
9093197 GGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 ---AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
9093243 AAAGGTGTC-ATAGTGCTGATTTAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAAT-GTGCTGATTCAAGGCCAGCTATATTGGACTT
*
9093286 AAAGAAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 ------AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
* *
9093335 AAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGAC-T-----T
* *
9093384 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATAATGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
9093427 AAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGTCTTAAAGAT
1 ----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGAC-T-----T
* *
9093482 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
9093525 AGAAGG
1 A-AAGG
9093531 GTTGCCACCG
Statistics
Matches: 757, Mismatches: 133, Indels: 247
0.67 0.12 0.22
Matches are distributed among these distances:
32 2 0.00
33 6 0.01
34 6 0.01
35 2 0.00
36 9 0.01
37 3 0.00
38 5 0.01
39 7 0.01
40 4 0.01
41 11 0.01
42 9 0.01
43 181 0.24
44 13 0.02
45 8 0.01
46 14 0.02
47 13 0.02
48 92 0.12
49 284 0.38
50 5 0.01
51 5 0.01
52 71 0.09
53 2 0.00
54 2 0.00
55 3 0.00
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (43 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
Found at i:9092700 original size:98 final size:98
Alignment explanation
Indices: 9092364--9092714 Score: 419
Period size: 98 Copynumber: 3.6 Consensus size: 98
9092354 TGAGAAAAGT
* * * * ** *
9092364 GATAAAGATGCCAATATGTTGATTCACGGCCAACGCTATTGGGCTTAAAGATGAGAAAAAGGATG
1 GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT--G--AAA-G-TG
* *
9092429 TCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAA
60 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA
9092468 GATGGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-AA-A-G---GTGCCA
1 GAT---AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAAGTGCCA
* *
9092527 ATGTGCTGATTCACGGCCAGCTACGTTGGACTTAAA
63 ATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA
* * *
9092563 GGT-GAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAAGTGCCAATG
1 GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAAGTGCCAATG
* *
9092627 TGCTGAGTCAAGGCCAGCTACATTGGTCTTAAA
66 TGCTGATTCAAGGCCAGCTACATTGGACTTAAA
*
9092660 GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAA
1 GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAA
9092715 GATGAGAAAA
Statistics
Matches: 215, Mismatches: 22, Indels: 26
0.82 0.08 0.10
Matches are distributed among these distances:
91 40 0.19
92 2 0.01
93 1 0.00
94 1 0.00
95 39 0.18
96 1 0.00
97 40 0.19
98 48 0.22
102 1 0.00
104 3 0.01
105 1 0.00
106 2 0.01
107 36 0.17
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.25
Consensus pattern (98 bp):
GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAAGTGCCAATG
TGCTGATTCAAGGCCAGCTACATTGGACTTAAA
Found at i:9092968 original size:363 final size:362
Alignment explanation
Indices: 9092255--9093436 Score: 2036
Period size: 363 Copynumber: 3.3 Consensus size: 362
9092245 CGAAAAATGA
* * * *
9092255 CAATGTGCTGATTCATGACCAGCGT-CATTGGGTTTTAAAGATGATGAAGGTGCCAATATGCTGA
1 CAATGTGCTGAGTCAAGGCCAGC-TACATT-GGTCTTAAAGAT-A--AAGGTGCCAATATGCTGA
9092319 TTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATGAGAAAAGTGATAAAGATGCCAATATGTT
61 TTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATGAGAAAAGTGATAAAGATGCCAATATGTT
9092384 GATTCACGGCCAACGCTATTGGGCTTAAAGATGAGAAAAAGGATGTCAATGTGCTGATTCAAGGC
126 GATTCACGGCCAACGCTATTGGGCTTAAAGATGAGAAAAAGGATGTCAATGTGCTGATTCAAGGC
9092449 CAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGA
191 CAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGA
9092514 CTTAAAGGTGCCAATGTGCTGATTCACGGCCAGCTACGTTGGACTTAAAGGTGAGGTGCCAATGT
256 CTTAAAGGTGCCAATGTGCTGATTCACGGCCAGCTACGTTGGACTTAAAGGTGAGGTGCCAATGT
9092579 GCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAAGTGC
321 GCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG-AAGTGC
9092622 CAATGTGCTGAGTCAAGGCCAGCTACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAA
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAA
9092687 GGCCAGCAATATTGGACTTAAAGATGAAGATGAGAAAAGTGATAAAGATGCCAATATGTTGATTC
66 GGCCAGCAATATTGGACTTAAAGATGAAGATGAGAAAAGTGATAAAGATGCCAATATGTTGATTC
9092752 ACGGCCAACGCTATTGGGCTTAAAGATGAGAAAAAGGATGTCAATGTGCTGATTCAAGGCCAGCT
131 ACGGCCAACGCTATTGGGCTTAAAGATGAGAAAAAGGATGTCAATGTGCTGATTCAAGGCCAGCT
9092817 ACATTGAACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAA
196 ACATTGAACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAA
9092882 AGGTGCCAATGTGCTGATTCACGGCCAGCTACGTTGGACTTAAAGGTGAGGTGCCAATGTGCTGA
261 AGGTGCCAATGTGCTGATTCACGGCCAGCTACGTTGGACTTAAAGGTGAGGTGCCAATGTGCTGA
*
9092947 TTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
326 TTCAAGGCCAGCTATATTGGACTTAAAGATGAA-GTGC
9092985 CAATGTGCTGAGTCAAGGCCAGCTACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAA
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAA
* * * * *
9093050 GGCCAGCTATATTGGGCTTAATGGTGAAGGTGAGAAAAGTGATAAAGATGCCAATATGTTGATTC
66 GGCCAGCAATATTGGACTTAAAGATGAAGATGAGAAAAGTGATAAAGATGCCAATATGTTGATTC
*
9093115 ACGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAATGTGCTGATTCAAGGCCAGCT
131 ACGGCCAACGCTATTGGGCTTAAAGATGAGAAAAAGGATGTCAATGTGCTGATTCAAGGCCAGCT
9093180 ACATTGAACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAA
196 ACATTGAACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAA
* * * * *** *
9093245 AGGTGTC-ATAGTGCTGATTTAAGGCCAGCTACATTGGACTTAAAGAAAAAGGTGCCAATATGCT
261 AGGTGCCAAT-GTGCTGATTCACGGCCAGCTACGTTGGACTTAAAG-GTGAGGTGCCAATGTGCT
9093309 GATTCAAGGCCAGCTATATTGGACTT-AA-A-G--GTGC
324 GATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGTGC
*
9093343 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAA
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAA
* *
9093408 GGCCAGCTATAATGGACTTAAAGATGAAG
66 GGCCAGCAATATTGGACTTAAAGATGAAG
9093437 GTGCCAATGT
Statistics
Matches: 786, Mismatches: 25, Indels: 17
0.95 0.03 0.02
Matches are distributed among these distances:
358 93 0.12
361 1 0.00
362 5 0.01
363 611 0.78
364 39 0.05
365 1 0.00
366 12 0.02
367 24 0.03
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (362 bp):
CAATGTGCTGAGTCAAGGCCAGCTACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAA
GGCCAGCAATATTGGACTTAAAGATGAAGATGAGAAAAGTGATAAAGATGCCAATATGTTGATTC
ACGGCCAACGCTATTGGGCTTAAAGATGAGAAAAAGGATGTCAATGTGCTGATTCAAGGCCAGCT
ACATTGAACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAA
AGGTGCCAATGTGCTGATTCACGGCCAGCTACGTTGGACTTAAAGGTGAGGTGCCAATGTGCTGA
TTCAAGGCCAGCTATATTGGACTTAAAGATGAAGTGC
Found at i:9093001 original size:49 final size:49
Alignment explanation
Indices: 9092793--9093081 Score: 376
Period size: 49 Copynumber: 6.0 Consensus size: 49
9092783 AAAAGGATGT
*
9092793 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGC
* *
9092845 CAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
9092888 CAATGTGCTGATTCACGGCCAGCTACGTTGGACTTAAAGGTG-AGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
9092936 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
9092985 CAATGTGCTGAGTCAAGGCCAGCTACATTGGTCTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * * *
9093034 CAATATGCTGATTCAAGGCCAGCTATATTGGGCTTAATGGTGAAGGTG
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTG
9093082 AGAAAAGTGA
Statistics
Matches: 209, Mismatches: 21, Indels: 17
0.85 0.09 0.07
Matches are distributed among these distances:
43 38 0.18
48 46 0.22
49 93 0.44
52 32 0.15
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (49 bp):
CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
Found at i:9093064 original size:98 final size:98
Alignment explanation
Indices: 9092727--9093081 Score: 400
Period size: 98 Copynumber: 3.6 Consensus size: 98
9092717 TGAGAAAAGT
* * * * ** *
9092727 GATAAAGATGCCAATATGTTGATTCACGGCCAACGCTATTGGGCTTAAAGATGAGAAAAAGGATG
1 GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT--G---AAGG-TG
* *
9092792 TCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAA
60 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA
9092831 GATGGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGCCA
1 GAT---AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCA
* *
9092890 ATGTGCTGATTCACGGCCAGCTACGTTGGACTTAAA
63 ATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA
* * * *
9092926 GGT-GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATG
1 GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATG
* *
9092990 TGCTGAGTCAAGGCCAGCTACATTGGTCTTAAA
66 TGCTGATTCAAGGCCAGCTACATTGGACTTAAA
* * *
9093023 GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTTAATGGTGAAGGTG
1 GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTG
9093082 AGAAAAGTGA
Statistics
Matches: 215, Mismatches: 26, Indels: 26
0.81 0.10 0.10
Matches are distributed among these distances:
91 39 0.18
95 40 0.19
96 4 0.02
97 43 0.20
98 49 0.23
103 1 0.00
104 3 0.01
107 36 0.17
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (98 bp):
GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATG
TGCTGATTCAAGGCCAGCTACATTGGACTTAAA
Found at i:9093318 original size:49 final size:49
Alignment explanation
Indices: 9093143--9093525 Score: 450
Period size: 49 Copynumber: 8.0 Consensus size: 49
9093133 CTTAAAGATG
* * *
9093143 AGAAAAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAA
1 AGAAAAAGG-TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAA
*
9093193 AGATGGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT--
1 AGA---AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAA
* *
9093243 ----AAAGGTGTC-ATAGTGCTGATTTAAGGCCAGCTACATTGGACTTAA
1 AGAAAAAGGTGCCAATA-TGCTGATTCAAGGCCAGCTACATTGGACTTAA
*
9093288 AGAAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT--
1 AGAAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAA
* *
9093335 ----AAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAA
1 AGAAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAA
* * *
9093380 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATAATGGACTTAA
1 AGAAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAA
** * * *
9093429 AGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGTCTTAA
1 AGAAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAA
* * *
9093478 AGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 AGAAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTA
9093526 GAAGGGTTGC
Statistics
Matches: 288, Mismatches: 28, Indels: 35
0.82 0.08 0.10
Matches are distributed among these distances:
42 3 0.01
43 76 0.26
49 163 0.57
50 6 0.02
52 34 0.12
53 6 0.02
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (49 bp):
AGAAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAA
Found at i:9093466 original size:98 final size:93
Alignment explanation
Indices: 9093146--9093530 Score: 560
Period size: 92 Copynumber: 4.1 Consensus size: 93
9093136 AAAGATGAGA
* * *
9093146 AAAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAA
1 AAAAGG-TGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT---AAAGGTGCCAA
9093211 TATGCTGATTCAAGGCCAGCTATATTGGACTT
62 TATGCTGATTCAAGGCCAGCTATATTGGACTT
* * * *
9093243 -AAAGGTGTC-ATAGTGCTGATTTAAGGCCAGCTACATTGGACTTAAAGAAAAAGGTGCCAATAT
1 AAAAGGTGCCAAT-GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATAT
9093306 GCTGATTCAAGGCCAGCTATATTGGACTT
65 GCTGATTCAAGGCCAGCTATATTGGACTT
9093335 -AAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
1 AAAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
*
9093399 CTGATTCAAGGCCAGCTATAATGGACTT
66 CTGATTCAAGGCCAGCTATATTGGACTT
*
9093427 AAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGTCTTAAAGATAAAGGTGCCA
1 --A-A--AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCA
*
9093492 ATATGCTGATTCAAGGCCAGCTATATTGGGCTT
61 ATATGCTGATTCAAGGCCAGCTATATTGGACTT
*
9093525 AGAAGG
1 AAAAGG
9093531 GTTGCCACCG
Statistics
Matches: 268, Mismatches: 12, Indels: 20
0.89 0.04 0.07
Matches are distributed among these distances:
92 127 0.47
93 6 0.02
94 2 0.01
95 38 0.14
96 7 0.03
98 88 0.33
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (93 bp):
AAAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATG
CTGATTCAAGGCCAGCTATATTGGACTT
Found at i:9093566 original size:32 final size:32
Alignment explanation
Indices: 9093518--9093660 Score: 202
Period size: 32 Copynumber: 4.5 Consensus size: 32
9093508 CCAGCTATAT
9093518 TGGGC-TTAGA-AGGGTTGCCACCGACTTGTG
1 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
*
9093548 TGGGCTTTAGAGAGGGTTGCCATCGACTTGTG
1 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
* *
9093580 TGGGCTTT-GAGGGGGTTGCCACCAACTTGTG
1 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
* *
9093611 TGGGCTTTAGAGAAGGTTTGCCATCGACTTGTG
1 TGGGCTTTAGAG-AGGGTTGCCACCGACTTGTG
*
9093644 TGGGCTTTAGAAAGGGT
1 TGGGCTTTAGAGAGGGT
9093661 GAAAGATGCC
Statistics
Matches: 99, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
30 5 0.05
31 33 0.33
32 34 0.34
33 27 0.27
ACGTcount: A:0.17, C:0.16, G:0.37, T:0.30
Consensus pattern (32 bp):
TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
Done.