Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold25
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9553305
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 6276 characters in sequence are not A, C, G, or T
File 53 of 56
Found at i:9093616 original size:63 final size:64
Alignment explanation
Indices: 9093529--9093651 Score: 221
Period size: 63 Copynumber: 1.9 Consensus size: 64
9093519 GGGCTTAGAA
*
9093529 GGGTTGCCACCGACTTGTGTGGGCTTTAGAG-AGGGTTGCCATCGACTTGTGTGGGCTTTGAGG
1 GGGTTGCCACCAACTTGTGTGGGCTTTAGAGAAGGGTTGCCATCGACTTGTGTGGGCTTTGAGG
*
9093592 GGGTTGCCACCAACTTGTGTGGGCTTTAGAGAAGGTTTGCCATCGACTTGTGTGGGCTTT
1 GGGTTGCCACCAACTTGTGTGGGCTTTAGAGAAGGGTTGCCATCGACTTGTGTGGGCTTT
9093652 AGAAAGGGTG
Statistics
Matches: 57, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
63 30 0.53
64 27 0.47
ACGTcount: A:0.14, C:0.18, G:0.37, T:0.32
Consensus pattern (64 bp):
GGGTTGCCACCAACTTGTGTGGGCTTTAGAGAAGGGTTGCCATCGACTTGTGTGGGCTTTGAGG
Found at i:9093714 original size:71 final size:70
Alignment explanation
Indices: 9093642--9094723 Score: 1240
Period size: 71 Copynumber: 15.7 Consensus size: 70
9093632 CATCGACTTG
** * * * *
9093642 TGTGGGCTTTAGAAAGGGTGAAAGATGCCACGAAGTTGTGGAC-TTAAAAAGAACAAG-GTGCCA
1 TGTGGGCTTTA-AAAGGGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGAGTGCCA
*
9093705 CAGAGT
65 CGGAGT
* * *
9093711 TGTGGGCTTTAAAAAGGAAAAAAAGAGTGCCACGGAGTTGTGGGC-TTAGAAGGAAAAAGAGTGC
1 TGTGGGCTTT-AAAAGG-GAAAAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGAGTGC
9093775 CACGGAGT
63 CACGGAGT
* * *
9093783 TGTGGGCTTAGAAAAGGGAAAAAAAGTGCCACAGAGTTGTGGGCTTTAAAAAGAAAAAG-GTGCC
1 TGTGGGCTT-TAAAAGGG-AAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGAGTGCC
9093847 ACGGAGT
64 ACGGAGT
*
9093854 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAAGAAAAAG-GTGCC
1 TGTGGGCTTT-AAAAGGGAAAAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGAGTGCC
*
9093918 ACAGAGT
64 ACGGAGT
* *
9093925 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAAGAAAAAGTGTGCC
1 TGTGGGCTTT-AAAAGGGAAAAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGAGTGCC
*
9093990 ACAGAGT
64 ACGGAGT
*
9093997 TGTGGGCTTTAAAA--GAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCC
1 TGTGGGCTTTAAAAGGGAAAAAGGTGCCACGGAGTTGTGGGCTTT-AAAA-AGAAAAAGAGTGCC
9094060 ACGGAGT
64 ACGGAGT
*
9094067 TGTGGGCTTTAAACA--GAAAAAGGTGTGCCACAGAGTTGTGGGCTTT-AAAAGAAAAAG-GTGC
1 TGTGGGCTTTAAA-AGGGAAAAA-G-GTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGAGTGC
9094128 CACGGAGT
63 CACGGAGT
* *
9094136 TGTGGGCTTTGAAAA--GAAGAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGTGTGCCA
1 TGTGGGCTTT-AAAAGGGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGAGTGCCA
*
9094199 CAGAGT
65 CGGAGT
* *
9094205 TGTGGGCTTTAAAA--GAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCC
1 TGTGGGCTTTAAAAGGGAAAAAGGTGCCACGGAGTTGTGGGCTTT-AAAA-AGAAAAAGAGTGCC
9094268 ACGGAGT
64 ACGGAGT
* ** *
9094275 TGTGGGCTTTAAACGAAAAAAAAGGTGTGCCACAGAGTTGTGGGCTTT-AAAAGAAAAAG-GTGC
1 TGTGGGCTTTAAAAG-GGAAAAA-G-GTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGAGTGC
9094338 CACGGAGT
63 CACGGAGT
* *
9094346 TGTGGGCTTTGAAAA--GAAGAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGTGTGCCA
1 TGTGGGCTTT-AAAAGGGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGAGTGCCA
*
9094409 CAGAGT
65 CGGAGT
* *
9094415 TGTGGGCTTTAAAA--GAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCC
1 TGTGGGCTTTAAAAGGGAAAAAGGTGCCACGGAGTTGTGGGCTTT-AAAA-AGAAAAAGAGTGCC
9094478 ACGGAGT
64 ACGGAGT
*
9094485 TGTGGGCTTT-AAACGGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAG-GTGCCAC
1 TGTGGGCTTTAAAAGGGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGAGTGCCAC
9094548 GGAGT
66 GGAGT
* * *
9094553 TGTGGAC-TT-AAAGATGAAAAAAGTGCCACGGAGTTGTGGGC-TT-AAAAG-----G-GTGCCA
1 TGTGGGCTTTAAAAG-GGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGAGTGCCA
9094608 CGGAGT
65 CGGAGT
* * * * *
9094614 TGTGGGC-TT-AGACGGAAAAAGAGTGCCACAGAGTTGTGGGC-TTAGAAGGAAAAAGAGTGCCA
1 TGTGGGCTTTAAAAGGGAAAAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGAGTGCCA
9094676 CGGAGT
65 CGGAGT
*
9094682 TGTGGGCTTT--AA---AAAGA-GTGCCACGGAGTTGTGGGCTTTAAA
1 TGTGGGCTTTAAAAGGGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAA
9094724 GAGTGCCACG
Statistics
Matches: 904, Mismatches: 66, Indels: 91
0.85 0.06 0.09
Matches are distributed among these distances:
60 6 0.01
61 43 0.05
62 3 0.00
63 18 0.02
64 4 0.00
65 4 0.00
66 5 0.01
67 50 0.06
68 170 0.19
69 120 0.13
70 114 0.13
71 241 0.27
72 76 0.08
73 29 0.03
75 21 0.02
ACGTcount: A:0.34, C:0.12, G:0.33, T:0.21
Consensus pattern (70 bp):
TGTGGGCTTTAAAAGGGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGAGTGCCAC
GGAGT
Found at i:9093773 original size:34 final size:35
Alignment explanation
Indices: 9093662--9094723 Score: 1284
Period size: 34 Copynumber: 30.9 Consensus size: 35
9093652 AGAAAGGGTG
* *
9093662 AAAGA-TGCCACGAAGTTGTGGAC-TTAAAAAGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
* *
9093695 CAAG-GTGCCACAGAGTTGTGGGCTTTAAAAAGGAAAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAA-G--AA
* *
9093732 AAAGAGTGCCACGGAGTTGTGGGC-TTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
9093766 AAAGAGTGCCACGGAGTTGTGGGC-TTAGAAAAGGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTA-AAAA--GAA
* *
9093803 AAAAAGTGCCACAGAGTTGTGGGCTTTAAAAAGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
*
9093838 AAAG-GTGCCACGGAGTTGTGGGCTTTGAAAAGGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTT-AAAA-AGAA
*
9093874 AAAGAGTGCCACAGAGTTGTGGGCTTTAAAAAGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
* *
9093909 AAAG-GTGCCACAGAGTTGTGGGCTTTGAAAAGGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTT-AAAA-AGAA
*
9093945 AAAGAGTGCCACAGAGTTGTGGGCTTTAAAAAGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
* *
9093980 AAAGTGTGCCACAGAGTTGTGGGCTTT-AAAAGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
*
9094014 AAAG-GTGCCACGGAGTTGTGGGCTTTGAAAAGGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTT-AAAA-AGAA
*
9094050 AAAGAGTGCCACGGAGTTGTGGGCTTTAAACAGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
* *
9094085 AAAGGTGTGCCACAGAGTTGTGGGCTTT-AAAAGAA
1 AAA-GAGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
*
9094120 AAAG-GTGCCACGGAGTTGTGGGCTTTGAAAAGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
*
9094154 GAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
* *
9094188 AAAGTGTGCCACAGAGTTGTGGGCTTT-AAAAGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
*
9094222 AAA-AGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTT-AAAA-AGAA
*
9094258 AAAGAGTGCCACGGAGTTGTGGGCTTTAAACGAAAAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAA--AAGAA
* *
9094295 AAAGGTGTGCCACAGAGTTGTGGGCTTT-AAAAGAA
1 AAA-GAGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
*
9094330 AAAG-GTGCCACGGAGTTGTGGGCTTTGAAAAGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
*
9094364 GAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
* *
9094398 AAAGTGTGCCACAGAGTTGTGGGCTTT-AAAAGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
*
9094432 AAA-AGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTT-AAAA-AGAA
**
9094468 AAAGAGTGCCACGGAGTTGTGGGCTTTAAACGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
9094503 AAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
* *
9094537 AAAG-GTGCCACGGAGTTGTGGAC-TTAAAGATGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAA-AAGAA
9094571 AAA-AGTGCCACGGAGTTGTGGGC-TT-AAAAG--
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
* **
9094601 ---G-GTGCCACGGAGTTGTGGGC-TTAGACGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
* * *
9094631 AAAGAGTGCCACAGAGTTGTGGGC-TTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
9094665 AAAGAGTGCCACGGAGTTGTGGGCTTT------AA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
9094694 AAAGAGTGCCACGGAGTTGTGGGCTTTAAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAA
9094724 GAGTGCCACG
Statistics
Matches: 918, Mismatches: 61, Indels: 101
0.85 0.06 0.09
Matches are distributed among these distances:
27 21 0.02
28 2 0.00
29 29 0.03
32 2 0.00
33 131 0.14
34 323 0.35
35 136 0.15
36 73 0.08
37 157 0.17
38 44 0.05
ACGTcount: A:0.34, C:0.12, G:0.33, T:0.20
Consensus pattern (35 bp):
AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
Found at i:9093859 original size:105 final size:102
Alignment explanation
Indices: 9093667--9094723 Score: 1343
Period size: 105 Copynumber: 10.2 Consensus size: 102
9093657 GGGTGAAAGA
* * * *
9093667 TGCCAC-GAAGTTGTGGACTTAAAAAGAACAAGGTGCCACAGAGTTGTGGGCTTTAAAAAGGAAA
1 TGCCACAG-AGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTT-AAAAGG--A
* *
9093731 AAAAGAGTGCCACGGAGTTGTGGGC-TTAGAAGGAAAAAGAG
62 AAAAGAGTGCCACGGAGTTGTGGGCTTTA-AAAGAAAAAGTG
* * * * *
9093772 TGCCACGGAGTTGTGGGCTTAGAAAAGGGAAAAAAAGTGCCACAGAGTTGTGGGCTTTAAAAAGA
1 TGCCACAGAGTTGTGGGCTT-TAAAA--G-AAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAGGA
*
9093837 AAAAG-GTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAG
62 AAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAA--GAAAAAGTG
*
9093880 TGCCACAGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACAGAGTTGTGGGCTTTGAAAAGGGAA
1 TGCCACAGAGTTGTGGGCTTT-AAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTT-AAAA-GGAA
*
9093945 AAAGAGTGCCACAGAGTTGTGGGCTTTAAAAAGAAAAAGTG
63 AAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAGAAAAAGTG
9093986 TGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAA
1 TGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTT-AAAA-GGAAA
9094051 AAGAGTGCCACGGAGTTGTGGGCTTTAAACAGAAAAAGGTG
64 AAGAGTGCCACGGAGTTGTGGGCTTTAAA-AGAAAAA-GTG
*
9094092 TGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAA-GAAGA
1 TGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTT-AAAAGGAAAA
9094156 AG-GTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGTG
65 AGAGTGCCACGGAGTTGTGGGCTTT-AAAAGAAAAAGTG
*
9094194 TGCCACAGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAA
1 TGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTT-AAAA-GGAAA
*
9094259 AAGAGTGCCACGGAGTTGTGGGCTTTAAACGAAAAAAAAGGTG
64 AAGAGTGCCACGGAGTTGTGGGCTTT-AA--AAGAAAAA-GTG
*
9094302 TGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAA-GAAGA
1 TGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTT-AAAAGGAAAA
9094366 AG-GTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGTG
65 AGAGTGCCACGGAGTTGTGGGCTTT-AAAAGAAAAAGTG
*
9094404 TGCCACAGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAA
1 TGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTT-AAAA-GGAAA
*
9094469 AAGAGTGCCACGGAGTTGTGGGCTTTAAACGGAAAAAG-G
64 AAGAGTGCCACGGAGTTGTGGGCTTTAAA-AGAAAAAGTG
* * *
9094508 TGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGAC-TTAAAGATGAAA
1 TGCCACAGAGTTGTGGGCTTT-AAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAA-AGGAAA
9094572 AA-AGTGCCACGGAGTTGTGGGC-TTAAAAG-----G-G
64 AAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAGTG
* ** * *
9094603 TGCCACGGAGTTGTGGGC-TTAGACGGAAAAAGAGTGCCACAGAGTTGTGGGC-TTAGAAGGAAA
1 TGCCACAGAGTTGTGGGCTTTA-AAAGAAAAAG-GTGCCACGGAGTTGTGGGCTTTAAAAGGAAA
*
9094666 AAGAGTGCCACGGAGTTGTGGGCTTT-----AAAAAGAG
64 AAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAGTG
*
9094700 TGCCACGGAGTTGTGGGCTTTAAA
1 TGCCACAGAGTTGTGGGCTTTAAA
9094724 GAGTGCCACG
Statistics
Matches: 876, Mismatches: 37, Indels: 86
0.88 0.04 0.09
Matches are distributed among these distances:
93 1 0.00
94 17 0.02
95 61 0.07
96 3 0.00
97 20 0.02
98 3 0.00
100 1 0.00
101 5 0.01
102 142 0.16
103 45 0.05
104 51 0.06
105 245 0.28
106 117 0.13
107 15 0.02
108 124 0.14
109 26 0.03
ACGTcount: A:0.34, C:0.12, G:0.33, T:0.20
Consensus pattern (102 bp):
TGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAGGAAAAA
GAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAGTG
Found at i:9094607 original size:27 final size:28
Alignment explanation
Indices: 9094569--9094746 Score: 173
Period size: 34 Copynumber: 6.0 Consensus size: 28
9094559 CTTAAAGATG
9094569 AAAAA-AGTGCCACGGAGTTGTGGGCTT
1 AAAAAGAGTGCCACGGAGTTGTGGGCTT
*
9094596 -AAAAGGGTGCCACGGAGTTGTGGGCTT
1 AAAAAGAGTGCCACGGAGTTGTGGGCTT
*
9094623 AGACGGAAAAAGAGTGCCACAGAGTTGTGGGCTT
1 ------AAAAAGAGTGCCACGGAGTTGTGGGCTT
9094657 AGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
1 ------AAAAAGAGTGCCACGGAGTTGTGGGC-TT
9094692 AAAAAGAGTGCCACGGAGTTGTGGGCTT
1 AAAAAGAGTGCCACGGAGTTGTGGGCTT
* **
9094720 -TAAAGAGTGCCACGGAGTCATGGGCTT
1 AAAAAGAGTGCCACGGAGTTGTGGGCTT
9094747 TGAAGAAAAA
Statistics
Matches: 134, Mismatches: 8, Indels: 18
0.84 0.05 0.11
Matches are distributed among these distances:
26 4 0.03
27 45 0.34
28 2 0.01
29 26 0.19
34 55 0.41
35 2 0.01
ACGTcount: A:0.29, C:0.15, G:0.36, T:0.21
Consensus pattern (28 bp):
AAAAAGAGTGCCACGGAGTTGTGGGCTT
Found at i:9094639 original size:61 final size:59
Alignment explanation
Indices: 9094536--9094773 Score: 220
Period size: 61 Copynumber: 3.9 Consensus size: 59
9094526 TTTAAAAAGA
*
9094536 AAAAG-GTGCCACGGAGTTGTGGACTTAAAGATGAAAAA-AGTGCCACGGAGTTGTGGGCTT
1 AAAAGAGTGCCACGGAGTTGTGGGCTT--AGA-GAAAAAGAGTGCCACGGAGTTGTGGGCTT
* *
9094596 AAAAGGGTGCCACGGAGTTGTGGGCTTAGACGGAAAAAGAGTGCCACAGAGTTGTGGGCTT
1 AAAAGAGTGCCACGGAGTTGTGGGCTTAGA--GAAAAAGAGTGCCACGGAGTTGTGGGCTT
*
9094657 AGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTT---TAAAAAGAGTGCCACGGAGTTGTGGGCT
1 -------AAAAGAGTGCCACGGAGTTGTGGGCTTAGAGAAAAAGAGTGCCACGGAGTTGTGGGCT
9094719 T
59 T
* ** * * *
9094720 TAAAGAGTGCCACGGAGTCATGGGCTTTGAAGAAAAA-A-TGCCACTGAGTCGTGG
1 AAAAGAGTGCCACGGAGTTGTGGGCTTAG-AGAAAAAGAGTGCCACGGAGTTGTGG
9094774 ACTTTGAGAC
Statistics
Matches: 152, Mismatches: 12, Indels: 30
0.78 0.06 0.15
Matches are distributed among these distances:
56 24 0.16
58 14 0.09
59 4 0.03
60 16 0.11
61 41 0.27
63 27 0.18
68 26 0.17
ACGTcount: A:0.30, C:0.14, G:0.35, T:0.21
Consensus pattern (59 bp):
AAAAGAGTGCCACGGAGTTGTGGGCTTAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTT
Found at i:9094747 original size:27 final size:27
Alignment explanation
Indices: 9094665--9094752 Score: 131
Period size: 27 Copynumber: 3.2 Consensus size: 27
9094655 TTAGAAGGAA
9094665 AAAGAGTGCCACGGAGTTGTGGGCTTT
1 AAAGAGTGCCACGGAGTTGTGGGCTTT
9094692 AAAAAGAGTGCCACGGAGTTGTGGGCTTT
1 --AAAGAGTGCCACGGAGTTGTGGGCTTT
**
9094721 AAAGAGTGCCACGGAGTCATGGGCTTT
1 AAAGAGTGCCACGGAGTTGTGGGCTTT
*
9094748 GAAGA
1 AAAGA
9094753 AAAAATGCCA
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
27 29 0.52
29 27 0.48
ACGTcount: A:0.27, C:0.15, G:0.35, T:0.23
Consensus pattern (27 bp):
AAAGAGTGCCACGGAGTTGTGGGCTTT
Found at i:9094769 original size:31 final size:31
Alignment explanation
Indices: 9094727--9094902 Score: 187
Period size: 31 Copynumber: 5.7 Consensus size: 31
9094717 CTTTAAAGAG
* * *
9094727 TGCCACGGAGTCATGGGCTTTGAAGAAAAAA
1 TGCCACTGAGTCGTGGACTTTGAAGAAAAAA
*
9094758 TGCCACTGAGTCGTGGACTTTG-AGACAAAA
1 TGCCACTGAGTCGTGGACTTTGAAGAAAAAA
* *
9094788 TGCCACTGAGTCGTGGTCTTTAAAGAAAAAGA
1 TGCCACTGAGTCGTGGACTTTGAAGAAAAA-A
* * * *
9094820 TGCCACTGAGTGGTGGACTTTG-AGCAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAAG-AAAAAA
* *
9094851 TGCCACTGAGTCGTGGACTTTG-AGAAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAAGAA-AAAA
*
9094882 TGCCACTTAGTCGTGGACTTT
1 TGCCACTGAGTCGTGGACTTT
9094903 AAAAAGGTAT
Statistics
Matches: 125, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
30 28 0.22
31 74 0.59
32 23 0.18
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.26
Consensus pattern (31 bp):
TGCCACTGAGTCGTGGACTTTGAAGAAAAAA
Found at i:9094838 original size:62 final size:62
Alignment explanation
Indices: 9094727--9094902 Score: 207
Period size: 62 Copynumber: 2.8 Consensus size: 62
9094717 CTTTAAAGAG
* * *
9094727 TGCCACGGAGTCATGGGCTTTGAAGAAAAA-ATGCCACTGAGTCGTGGACTTTGAGACA-A-AA
1 TGCCACTGAGTCGTGGACTTT-AAGAAAAAGATGCCACTGAGTCGTGGACTTTGAG-CAGAGAA
* * *
9094788 TGCCACTGAGTCGTGGTCTTTAAAGAAAAAGATGCCACTGAGTGGTGGACTTTGAGCAGAGAT
1 TGCCACTGAGTCGTGGACTTT-AAGAAAAAGATGCCACTGAGTCGTGGACTTTGAGCAGAGAA
* * *
9094851 TGCCACTGAGTCGTGGACTTTGAG-AAGAGATTGCCACTTAGTCGTGGACTTT
1 TGCCACTGAGTCGTGGACTTTAAGAAAAAGA-TGCCACTGAGTCGTGGACTTT
9094903 AAAAAGGTAT
Statistics
Matches: 100, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
61 33 0.33
62 46 0.46
63 21 0.21
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.26
Consensus pattern (62 bp):
TGCCACTGAGTCGTGGACTTTAAGAAAAAGATGCCACTGAGTCGTGGACTTTGAGCAGAGAA
Found at i:9098867 original size:21 final size:21
Alignment explanation
Indices: 9098841--9098918 Score: 104
Period size: 21 Copynumber: 3.7 Consensus size: 21
9098831 AATATTATCC
9098841 AAATGTATCGATACATTTGTA
1 AAATGTATCGATACATTTGTA
* *
9098862 AAATGTATCAATACATTTGTG
1 AAATGTATCGATACATTTGTA
* *
9098883 GAATGTATCGATACA-TTCTA
1 AAATGTATCGATACATTTGTA
9098903 CAAATGTATCGATACA
1 -AAATGTATCGATACA
9098919 GGGTCCCAAC
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
20 3 0.06
21 46 0.94
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35
Consensus pattern (21 bp):
AAATGTATCGATACATTTGTA
Found at i:9099047 original size:13 final size:13
Alignment explanation
Indices: 9099029--9099054 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
9099019 CATTTTTCTG
9099029 TGTATCGATACAT
1 TGTATCGATACAT
9099042 TGTATCGATACAT
1 TGTATCGATACAT
9099055 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:9099051 original size:33 final size:33
Alignment explanation
Indices: 9099009--9099074 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
9098999 GCCAAGGGAA
***
9099009 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
9099042 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
9099075 CTTGGAAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:9101553 original size:27 final size:28
Alignment explanation
Indices: 9101523--9101596 Score: 107
Period size: 27 Copynumber: 2.7 Consensus size: 28
9101513 TTTCTTCACA
9101523 ATCGGGGATACTCCAACCCCGTTA-ATC
1 ATCGGGGATACTCCAACCCCGTTATATC
*
9101550 ATCGGGGATACTCCAACCCCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATATC
*
9101578 -TGAGGGGATACTCCAACCC
1 AT-CGGGGATACTCCAACCC
9101597 TGACTTTATT
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
27 25 0.58
28 18 0.42
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTATATC
Found at i:9101647 original size:51 final size:51
Alignment explanation
Indices: 9101581--9101802 Score: 219
Period size: 52 Copynumber: 4.3 Consensus size: 51
9101571 TTATTTCTGA
* * * * * *
9101581 GGGGATACTCCAACCCTGACTTTATTTCCAAAATATTGATTTTTCGTAATC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACACTAATTTTTCATAATC
* * * *
9101632 GGGGATACTCCAACCCCGGTTTTATTGCTAAAACACTAATTTTTCCACAATC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACACTAATTTTT-CATAATC
* * * ** *
9101684 GGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTACCTTTAATC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACACTAATTTTTC-ATAATC
* * * *
9101736 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCACAATC
1 GGGGATACTCCAACCCCGATTTTATTTCC-AAAACACTAATTTTTCATAATC
* *
9101788 GAGGATACTCTAACC
1 GGGGATACTCCAACC
9101803 TCGTTATTTT
Statistics
Matches: 139, Mismatches: 29, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
51 37 0.27
52 89 0.64
53 13 0.09
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.32
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGATTTTATTTCCAAAACACTAATTTTTCATAATC
Found at i:9101879 original size:263 final size:263
Alignment explanation
Indices: 9101410--9101912 Score: 767
Period size: 263 Copynumber: 1.9 Consensus size: 263
9101400 TTCCCAATTC
* * * *
9101410 TCCACAATCGGGAATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTTCTATAATCGGGGA
1 TCCACAATCGGGAATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTCCTATAATCGGGGA
*
9101475 TACTCCAACTCCGATTTTATTTCCAAAAAAAACACCAATTTCTTCACAATCGGGGATACTCCAAC
66 TACTCCAACTCCGATTTTATTTCC--AAAAAACACCAATTTCTTCACAATCGAGGATACTCCAAC
* * *
9101540 CCCGTTAATCATCGGGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCCAACCCTGACTTTA
129 CCCGTTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGACTTTA
* * *
9101605 TTTCCAAAATATTGATTTTTCGTAATCGGGGATACTCCAACCCCGGTTTTATTGCTAAAACACTA
194 TTCCCAAAATATTGATTTCTCATAATCGGGGATACTCCAACCCCGGTTTTATTGCTAAAACACTA
9101670 ATTTT
259 ATTTT
* * *
9101675 TCCACAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTACCTTTAATCGGGG
1 TCCACAATCGGGAATACTCCAACCCCGATTTTATTTTCAAAACACCAATTT-CCTATAATCGGGG
* *
9101740 ATACTCCAACTCCGATTTTATTTCC-AAAAATACCAATTT-TTCACAATCGAGGATACTCTAACC
65 ATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACC
* * * *
9101803 TCGTTATTTTATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTTA
130 CCGTTA-ATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGACTTTA
*
9101868 TTCCCAAAATATTGATTTCTCATAATTGGGGATACTCCAACCCCG
194 TTCCCAAAATATTGATTTCTCATAATCGGGGATACTCCAACCCCG
9101913 TTATTTTCGA
Statistics
Matches: 215, Mismatches: 21, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
262 27 0.13
263 106 0.49
265 46 0.21
266 36 0.17
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (263 bp):
TCCACAATCGGGAATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTCCTATAATCGGGGA
TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCC
CGTTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGACTTTATT
CCCAAAATATTGATTTCTCATAATCGGGGATACTCCAACCCCGGTTTTATTGCTAAAACACTAAT
TTT
Found at i:9101927 original size:107 final size:108
Alignment explanation
Indices: 9101736--9101940 Score: 250
Period size: 107 Copynumber: 1.9 Consensus size: 108
9101726 ACCTTTAATC
* * * *
9101736 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCACAATCGAGGATACTCTAA
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCACAATCGAGGATACTCCAA
* **
9101801 CCTCGTTATTTTATCGGGGATACTCCAACCCCGTTACTTCCGA
66 CCCCGTTATTTTAGAGGGGATACTCCAACCCCGTTACTTCCGA
* * *** * * *
9101844 GGGGATACTCCAACCCCGGCTTTA-TTCCCAAAATATTGATTTCTCATAATTGGGGATACTCCAA
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCACAATCGAGGATACTCCAA
* *
9101908 CCCCGTTATTTTCGAGGGGATACTCCAATCCCG
66 CCCCGTTATTTTAGAGGGGATACTCCAACCCCG
9101941 ATTCTTTTTT
Statistics
Matches: 80, Mismatches: 17, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
107 59 0.74
108 21 0.26
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.30
Consensus pattern (108 bp):
GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCACAATCGAGGATACTCCAA
CCCCGTTATTTTAGAGGGGATACTCCAACCCCGTTACTTCCGA
Found at i:9101994 original size:80 final size:79
Alignment explanation
Indices: 9101815--9102020 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 79
9101805 GTTATTTTAT
* *
9101815 CGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCCAAAATAT
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTCCCAAAATAT
* * *
9101880 TGATTTCTCATAAT
66 CGATTTCTCACAAC
* * * ** *
9101894 TGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAATCCCGATTCTTT-TTTTC-TAAT
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCG--GCTTTATTCCCAAAAT
9101957 CATCGATTTCTCACAAC
64 -ATCGATTTCTCACAAC
* * * *
9101974 CGGGGATACTCCAGCCCCGTTATTTTCAAGGGAACACTCCAACCCCG
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCG
9102021 TTATTATCTC
Statistics
Matches: 107, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
79 46 0.43
80 57 0.53
81 4 0.04
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.29
Consensus pattern (79 bp):
CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTCCCAAAATAT
CGATTTCTCACAAC
Found at i:9102046 original size:80 final size:77
Alignment explanation
Indices: 9101815--9102048 Score: 234
Period size: 80 Copynumber: 2.9 Consensus size: 77
9101805 GTTATTTTAT
* * * *
9101815 CGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCCAAAATAT
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCC-GTTTTATT-CCAAAACAT
* *
9101880 TGATTTCTCATAAT
64 TGATTTCTCACAAC
* * * * * *
9101894 TGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAATCCCGATTCTTTTTTTCTAATCA
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCG--T-TTTATTCCAAAACA
*
9101959 TCGATTTCTCACAAC
63 TTGATTTCTCACAAC
* * * *
9101974 CGGGGATACTCCAGCCCCGTTATTTTCAAGGGAACACTCCAACCCCGTTATTATCTCCAAAACAT
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGTT-TTAT-TCCAAAACAT
*
9102039 TAAATTTCTC
64 T-GATTTCTC
9102049 TTCGGGAAAT
Statistics
Matches: 124, Mismatches: 25, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
77 1 0.01
78 5 0.04
79 49 0.40
80 64 0.52
81 5 0.04
ACGTcount: A:0.25, C:0.29, G:0.15, T:0.30
Consensus pattern (77 bp):
CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGTTTTATTCCAAAACATTG
ATTTCTCACAAC
Found at i:9105739 original size:29 final size:29
Alignment explanation
Indices: 9105651--9106548 Score: 1033
Period size: 28 Copynumber: 30.9 Consensus size: 29
9105641 TAAAAAAATG
*
9105651 GTGCCACTAACTTATGTGGGCTTTGAAAAGA
1 GTGCCACTGAC-T-TGTGGGCTTTGAAAAGA
*
9105682 GTTGCCACTGACTCGTGTGAGCTTTGAAAAGA
1 G-TGCCACTGACT--TGTGGGCTTTGAAAAGA
*
9105714 GTGCCACTGACTTGTGGGCTTTG-AAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
9105742 GTGCCACTGACTTGTGGGCTTTAAAAAG-
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
9105770 GTGCCACTGATTTGCGTGGGCTTTGAAAAGA
1 GTGCCACTGACTT--GTGGGCTTTGAAAAGA
* * *
9105801 TTGCCACTAACTTGTGGGCTTTG-AAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* *
9105829 GTGCCACTGACTTGCGCGGGCTTTG-AAAGG
1 GTGCCACTGACTT--GTGGGCTTTGAAAAGA
*
9105859 GTGCCACTGACTTATGGGCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* * *
9105888 -TGCCATTAACTTGTGGTCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
9105916 GTGCCACGACTGACTTGTGGGCTTTGAAAAGA
1 GTG-C-C-ACTGACTTGTGGGCTTTGAAAAGA
* * *
9105948 GTGCCACTGATTTATGGGCTTTG-AAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* *
9105976 GTGCCACTAACTTGCATGGGCTTTG-AAAGG
1 GTGCCACTGACTTG--TGGGCTTTGAAAAGA
* *
9106006 GTGCCACTGACTCGTGGGCTTTG-AAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
9106034 GTGCCACTGACTCGTGGGCTTTGAAAAG-
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
9106062 GTGCCACTGACTTGTGGGCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
9106091 ATGCCACTGACTTGTGGGCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
** *
9106120 GTTGCCACCAACTCGTGTGGGCTTTGAAAGGA
1 G-TGCCACTGACT--TGTGGGCTTTGAAAAGA
* *
9106152 GTGCTACTGACTTGTGGGCTTTGAAAGGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
9106181 -TGCCACTAACTTGTGGGCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* *
9106209 ATGCCACTGACTTGTGGGCTTTG-AAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* *
9106237 GTGCCACTGACTTATGGGCTTTG-AAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* *
9106265 GTGCCACTGACTCGTGGGCTTTG-AAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* *
9106293 GTGTCACTGATTTGTGGGCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
9106322 GTGCCACTGACTTGTGGGCTTT-AAAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
9106350 GTGCCACTGACTTGCGTGGGCTTTGAAAGGA
1 GTGCCACTGACTT--GTGGGCTTTGAAAAGA
* *
9106381 -TGCCATTGACTTGTGGGCTTT-AAAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* *
9106408 GTGCCACTGACTTACTTGGGCTTTG-AAAGG
1 GTGCCACTGACTT--GTGGGCTTTGAAAAGA
*
9106438 GTGCCACTGACTTATGGGCTTTG-AAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
** *
9106466 GTGCCACTGACTCAT-GGCTTTGAAAAAA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
9106494 ATGCCACTGACTTGTGGGCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
9106523 ATGCCACTGACTTGTGGGCTTTGAAA
1 GTGCCACTGACTTGTGGGCTTTGAAA
9106549 GGAATGAACA
Statistics
Matches: 763, Mismatches: 73, Indels: 64
0.85 0.08 0.07
Matches are distributed among these distances:
27 11 0.01
28 346 0.45
29 178 0.23
30 124 0.16
31 37 0.05
32 67 0.09
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.28
Consensus pattern (29 bp):
GTGCCACTGACTTGTGGGCTTTGAAAAGA
Found at i:9105828 original size:58 final size:56
Alignment explanation
Indices: 9105650--9106548 Score: 977
Period size: 58 Copynumber: 15.5 Consensus size: 56
9105640 TTAAAAAAAT
* *
9105650 GGTGCCACTAACTTATGTGGGCTTTGAAAAGAGTTGCCACTGACTCGTGTGAGCTTTGAAAA
1 GGTGCCACTGAC-T-TGTGGGCTTTGAAAAGAG-TGCCACTGACT--TGTGGGCTTTG-AAA
* *
9105712 GAGTGCCACTGACTTGTGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTAAAAA
1 G-GTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTT-GAAA
* * *
9105769 GGTGCCACTGATTTGCGTGGGCTTTGAAAAGATTGCCACTAACTTGTGGGCTTTGAAA
1 GGTGCCACTGACTT--GTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAA
* * *
9105827 GGGTGCCACTGACTTGCGCGGGCTTTG-AAAGGGTGCCACTGACTTATGGGCTTTGAAAA
1 -GGTGCCACTGACTT--GTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTG-AAA
* * * *
9105886 GATGCCATTAACTTGTGGTCTTTGAAAAGAGTGCCACGACTGACTTGTGGGCTTTGAAAA
1 GGTGCCACTGACTTGTGGGCTTTGAAAAGAGTG-C-C-ACTGACTTGTGGGCTTTG-AAA
* * * *
9105946 GAGTGCCACTGATTTATGGGCTTTG-AAAGGGTGCCACTAACTTGCATGGGCTTTGAAA
1 G-GTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTG--TGGGCTTTGAAA
* * *
9106004 GGGTGCCACTGACTCGTGGGCTTTG-AAAGGGTGCCACTGACTCGTGGGCTTTGAAAA
1 -GGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTG-AAA
*
9106061 GGTGCCACTGACTTGTGGGCTTTGAAAAGAATGCCACTGACTTGTGGGCTTTGAAAA
1 GGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTG-AAA
** * *
9106118 GAGTTGCCACCAACTCGTGTGGGCTTTGAAAGGAGTGCTACTGACTTGTGGGCTTTGAAA
1 G-G-TGCCACTGACT--TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAA
* *
9106178 GGATGCCACTAACTTGTGGGCTTTGAAAAGAATGCCACTGACTTGTGGGCTTTGAAA
1 GG-TGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAA
* * *
9106235 GGGTGCCACTGACTTATGGGCTTTG-AAAGGGTGCCACTGACTCGTGGGCTTTGAAA
1 -GGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAA
* * *
9106291 GGGTGTCACTGATTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTAAAA
1 -GGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAA
* * *
9106348 GGGTGCCACTGACTTGCGTGGGCTTTGAAAGGA-TGCCATTGACTTGTGGGCTTTAAAA
1 -GGTGCCACTGACTT--GTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAA
* * *
9106406 GGGTGCCACTGACTTACTTGGGCTTTG-AAAGGGTGCCACTGACTTATGGGCTTTGAAA
1 -GGTGCCACTGACTT--GTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAA
** * *
9106464 GAGTGCCACTGACTCAT-GGCTTTGAAAAAAATGCCACTGACTTGTGGGCTTTGAAAA
1 G-GTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTG-AAA
*
9106521 GAATGCCACTGACTTGTGGGCTTTGAAA
1 G-GTGCCACTGACTTGTGGGCTTTGAAA
9106549 GGAATGAACA
Statistics
Matches: 727, Mismatches: 80, Indels: 64
0.83 0.09 0.07
Matches are distributed among these distances:
55 7 0.01
56 127 0.17
57 183 0.25
58 186 0.26
59 109 0.15
60 38 0.05
61 65 0.09
62 2 0.00
63 10 0.01
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.28
Consensus pattern (56 bp):
GGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAA
Found at i:9107758 original size:11 final size:10
Alignment explanation
Indices: 9107742--9107832 Score: 73
Period size: 10 Copynumber: 9.2 Consensus size: 10
9107732 CCCCTTTCTG
9107742 TTTTTTGTTAT
1 TTTTTTGTT-T
* *
9107753 TTTTTTCTTG
1 TTTTTTGTTT
*
9107763 GTTTTT-TTT
1 TTTTTTGTTT
*
9107772 TTGTTT-TTT
1 TTTTTTGTTT
*
9107781 ATTTTTGTTT
1 TTTTTTGTTT
9107791 TTTTTT-TTT
1 TTTTTTGTTT
9107800 TTTTTTGGTTT
1 TTTTTT-GTTT
*
9107811 TTTTCTGTTT
1 TTTTTTGTTT
9107821 TTTGTTT-TTT
1 TTT-TTTGTTT
9107831 TT
1 TT
9107833 GTATGAAGGA
Statistics
Matches: 65, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
9 22 0.34
10 25 0.38
11 18 0.28
ACGTcount: A:0.02, C:0.02, G:0.10, T:0.86
Consensus pattern (10 bp):
TTTTTTGTTT
Found at i:9107768 original size:1 final size:1
Alignment explanation
Indices: 9107764--9107832 Score: 66
Period size: 1 Copynumber: 69.0 Consensus size: 1
9107754 TTTTTCTTGG
* * * ** * * *
9107764 TTTTTTTTTTGTTTTTTATTTTTGTTTTTTTTTTTTTTTTTTGGTTTTTTTCTGTTTTTTGTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
9107829 TTTT
1 TTTT
9107833 GTATGAAGGA
Statistics
Matches: 54, Mismatches: 14, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 54 1.00
ACGTcount: A:0.01, C:0.01, G:0.09, T:0.88
Consensus pattern (1 bp):
T
Found at i:9107773 original size:26 final size:23
Alignment explanation
Indices: 9107742--9107832 Score: 94
Period size: 26 Copynumber: 3.7 Consensus size: 23
9107732 CCCCTTTCTG
9107742 TTTTTTGTTATTTTTTTCTTGGTTTT
1 TTTTTTGTT-TTTTTTT-TT-GTTTT
9107768 TTTTTTGTTTTTTATTTTTGTTTT
1 TTTTTTGTTTTTT-TTTTTGTTTT
*
9107792 TTTTTT-TTTTTTTTGGTTTTTTTCT
1 TTTTTTGTTTTTTTT--TTTGTTT-T
9107817 GTTTTTTGTTTTTTTT
1 -TTTTTTGTTTTTTTT
9107833 GTATGAAGGA
Statistics
Matches: 58, Mismatches: 1, Indels: 11
0.83 0.01 0.16
Matches are distributed among these distances:
22 2 0.03
23 6 0.10
24 17 0.29
25 7 0.12
26 18 0.31
27 8 0.14
ACGTcount: A:0.02, C:0.02, G:0.10, T:0.86
Consensus pattern (23 bp):
TTTTTTGTTTTTTTTTTTGTTTT
Found at i:9107777 original size:33 final size:32
Alignment explanation
Indices: 9107740--9107832 Score: 95
Period size: 32 Copynumber: 3.0 Consensus size: 32
9107730 GACCCCTTTC
*
9107740 TGTTTTTTGTTATTT-TTTTCTTGGTTTTTTTTT
1 TGTTTTTTATT-TTTGTTTT-TTGGTTTTTTTTT
**
9107773 TGTTTTTTATTTTTGTTTTTTTTTTTTTTTTT
1 TGTTTTTTATTTTTGTTTTTTGGTTTTTTTTT
* *
9107805 TG-GTTTT-TTTCTGTTTTTT-GTTTTTTTT
1 TGTTTTTTATTTTTGTTTTTTGGTTTTTTTT
9107833 GTATGAAGGA
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
29 8 0.15
30 11 0.21
31 4 0.08
32 16 0.30
33 14 0.26
ACGTcount: A:0.02, C:0.02, G:0.11, T:0.85
Consensus pattern (32 bp):
TGTTTTTTATTTTTGTTTTTTGGTTTTTTTTT
Found at i:9107785 original size:30 final size:28
Alignment explanation
Indices: 9107742--9107832 Score: 98
Period size: 27 Copynumber: 3.3 Consensus size: 28
9107732 CCCCTTTCTG
*
9107742 TTTTTTGTTATTTTTTTCTTGGTTTTTTT
1 TTTTTTTTTATTTTTTTCTT-GTTTTTTT
*
9107771 TTTGTTTTTTATTTTTGT-TT-TTTTTTT
1 TTT-TTTTTTATTTTTTTCTTGTTTTTTT
** *
9107798 TTTTTTTTGGTTTTTTTC-TGTTTTTTG
1 TTTTTTTTTATTTTTTTCTTGTTTTTTT
9107825 TTTTTTTT
1 TTTTTTTT
9107833 GTATGAAGGA
Statistics
Matches: 53, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
26 12 0.23
27 24 0.45
29 5 0.09
30 12 0.23
ACGTcount: A:0.02, C:0.02, G:0.10, T:0.86
Consensus pattern (28 bp):
TTTTTTTTTATTTTTTTCTTGTTTTTTT
Found at i:9107811 original size:12 final size:11
Alignment explanation
Indices: 9107742--9107832 Score: 80
Period size: 11 Copynumber: 8.4 Consensus size: 11
9107732 CCCCTTTCTG
* *
9107742 TTTTTTGTTAT
1 TTTTTTTTTGT
*
9107753 TTTTTTCTTGGT
1 TTTTTT-TTTGT
9107765 TTTTTTTTTGT
1 TTTTTTTTTGT
9107776 TTTTTATTTT-T
1 TTTTT-TTTTGT
*
9107787 GTTTTTTTT-T
1 TTTTTTTTTGT
*
9107797 TTTTTTTTTGG
1 TTTTTTTTTGT
*
9107808 TTTTTTTCTGT
1 TTTTTTTTTGT
*
9107819 TTTTTGTTT-T
1 TTTTTTTTTGT
9107829 TTTT
1 TTTT
9107833 GTATGAAGGA
Statistics
Matches: 66, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
10 18 0.27
11 36 0.55
12 12 0.18
ACGTcount: A:0.02, C:0.02, G:0.10, T:0.86
Consensus pattern (11 bp):
TTTTTTTTTGT
Found at i:9107812 original size:27 final size:26
Alignment explanation
Indices: 9107764--9107830 Score: 75
Period size: 25 Copynumber: 2.7 Consensus size: 26
9107754 TTTTTCTTGG
* *
9107764 TTTTTTTTTTGTTTTTTATTTTTGTT
1 TTTTTTTTTTGTTTTTTGTTTTTTTT
*
9107790 TTTTTTTTTT-TTTTTTGGTTTTTTT
1 TTTTTTTTTTGTTTTTTGTTTTTTTT
* *
9107815 CTGTTTTT-TGTTTTTT
1 TTTTTTTTTTGTTTTTT
9107831 TTGTATGAAG
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
24 1 0.03
25 24 0.69
26 10 0.29
ACGTcount: A:0.01, C:0.01, G:0.09, T:0.88
Consensus pattern (26 bp):
TTTTTTTTTTGTTTTTTGTTTTTTTT
Found at i:9121161 original size:7 final size:6
Alignment explanation
Indices: 9121121--9121162 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
9121111 AAAGCAATAA
*
9121121 AAAAAG AAAAAG AAAAAG AGAAAAG -GAAAG AAAAAG TAAAAA
1 AAAAAG AAAAAG AAAAAG A-AAAAG AAAAAG AAAAAG -AAAAA
9121163 AATGGAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
5 4 0.13
6 17 0.55
7 10 0.32
ACGTcount: A:0.79, C:0.00, G:0.19, T:0.02
Consensus pattern (6 bp):
AAAAAG
Found at i:9124222 original size:43 final size:41
Alignment explanation
Indices: 9124120--9124250 Score: 131
Period size: 43 Copynumber: 3.2 Consensus size: 41
9124110 ATTGGTTTGT
* * * *
9124120 ATGGTTTCGTCTTGGCCAATATCTCA-CCTTTGTTGATGTG
1 ATGGTTTCGCCATGGTCAACATCTCACCCTTTGTTGATGTG
* *
9124160 ATGGTTTCGCCTTGTTCAACATCTCACCCTTTGTTGACT-TG
1 ATGGTTTCGCCATGGTCAACATCTCACCCTTTGTTGA-TGTG
* * * *
9124201 ATATGGTTTTGCCATGGTCAACATCTTACCCTTTGTTAACGTG
1 --ATGGTTTCGCCATGGTCAACATCTCACCCTTTGTTGATGTG
9124244 ATGGTTT
1 ATGGTTT
9124251 AGCCCTAGTC
Statistics
Matches: 76, Mismatches: 10, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
40 22 0.29
41 19 0.25
42 1 0.01
43 34 0.45
ACGTcount: A:0.17, C:0.21, G:0.20, T:0.42
Consensus pattern (41 bp):
ATGGTTTCGCCATGGTCAACATCTCACCCTTTGTTGATGTG
Found at i:9124262 original size:41 final size:41
Alignment explanation
Indices: 9124146--9124268 Score: 122
Period size: 41 Copynumber: 3.0 Consensus size: 41
9124136 CAATATCTCA
* * * *
9124146 CCTTTGTTGATGTGATGGTTTCG-CCTTGTTCAACATCTCAC
1 CCTTTGTTGACGTGATGGTTTAGCCCTAG-TCAACATCTTAC
* * * *
9124187 CCTTTGTTGACTTGATATGGTTTTGCCATGGTCAACATCTTAC
1 CCTTTGTTGACGTG--ATGGTTTAGCCCTAGTCAACATCTTAC
* *
9124230 CCTTTGTTAACGTGATGGTTTAGCCCTAGTCAACTTCTT
1 CCTTTGTTGACGTGATGGTTTAGCCCTAGTCAACATCTT
9124269 TTTGACTTAG
Statistics
Matches: 67, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
41 33 0.49
43 31 0.46
44 3 0.04
ACGTcount: A:0.17, C:0.23, G:0.19, T:0.41
Consensus pattern (41 bp):
CCTTTGTTGACGTGATGGTTTAGCCCTAGTCAACATCTTAC
Found at i:9124422 original size:66 final size:66
Alignment explanation
Indices: 9124342--9124657 Score: 346
Period size: 66 Copynumber: 4.8 Consensus size: 66
9124332 CTAATTGTCC
** * ** *
9124342 TTAGTTGACGTGATGGTTTTGCCCTAGTCAACCTTATTTCGACTTAGGTTTCGCTGTGGTCACCT
1 TTAGTTGACGTGATGGTTTCACCCTAGTCAACCTTCTTTCGACTTAGGTTTCGCCCTAGTCACCT
9124407 A
66 A
* * * * * * *
9124408 TTAGTTAACATGATGGTTTCACCTTGGTGAACC-TCTTTTTGACTTAGGTTTCTCCCTAGTCACC
1 TTAGTTGACGTGATGGTTTCACCCTAGTCAACCTTC-TTTCGACTTAGGTTTCGCCCTAGTCACC
9124472 TA
65 TA
* * ** * **
9124474 TTAGTTGACATGATGATTTTGCCCTGGTCAACCACCTTTCGACTTAGGTTTCGCCCTAGTCACCT
1 TTAGTTGACGTGATGGTTTCACCCTAGTCAACCTTCTTTCGACTTAGGTTTCGCCCTAGTCACCT
9124539 A
66 A
* * * * * *
9124540 TTAGTTGATGTGATGGTTTCACCTTAGTGAACCTCCTTTCGACTTAGGTTTCGCCTTAGTCACTT
1 TTAGTTGACGTGATGGTTTCACCCTAGTCAACCTTCTTTCGACTTAGGTTTCGCCCTAGTCACCT
9124605 A
66 A
* * * *
9124606 TTAGTTGATGTCATGGTTTCACCCTTGTTAACCTTCTTTCGACTTAGGTTTC
1 TTAGTTGACGTGATGGTTTCACCCTAGTCAACCTTCTTTCGACTTAGGTTTC
9124658 ACCTTGGTCA
Statistics
Matches: 210, Mismatches: 38, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
65 1 0.00
66 208 0.99
67 1 0.00
ACGTcount: A:0.18, C:0.23, G:0.19, T:0.40
Consensus pattern (66 bp):
TTAGTTGACGTGATGGTTTCACCCTAGTCAACCTTCTTTCGACTTAGGTTTCGCCCTAGTCACCT
A
Found at i:9124482 original size:32 final size:32
Alignment explanation
Indices: 9124446--9124547 Score: 77
Period size: 32 Copynumber: 3.1 Consensus size: 32
9124436 GAACCTCTTT
9124446 TTGACTTAGGTTTCTCCCTAGTCACCTATTAG
1 TTGACTTAGGTTTCTCCCTAGTCACCTATTAG
* * *
9124478 TTGACATGATGATTT-TGCCCTGGTCAACC-ACCTT--
1 TTGAC-TTA-GGTTTCT-CCCTAGTC-ACCTA--TTAG
* *
9124512 TCGACTTAGGTTTCGCCCTAGTCACCTATTAG
1 TTGACTTAGGTTTCTCCCTAGTCACCTATTAG
9124544 TTGA
1 TTGA
9124548 TGTGATGGTT
Statistics
Matches: 51, Mismatches: 9, Indels: 20
0.64 0.11 0.25
Matches are distributed among these distances:
30 2 0.04
31 3 0.06
32 20 0.39
33 5 0.10
34 16 0.31
35 3 0.06
36 2 0.04
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.37
Consensus pattern (32 bp):
TTGACTTAGGTTTCTCCCTAGTCACCTATTAG
Found at i:9124591 original size:32 final size:31
Alignment explanation
Indices: 9124554--9124684 Score: 106
Period size: 32 Copynumber: 4.0 Consensus size: 31
9124544 TTGATGTGAT
*
9124554 GGTTTCACCTTAGTGAACCTCCTTTCGACTTA
1 GGTTTCACCTTAGT-AACCTTCTTTCGACTTA
* * * *
9124586 GGTTTCGCCTTAGTCA-CTTATTAGTTGA-TGTCA
1 GGTTTCACCTTAGTAACCTTCTT--TCGACT-T-A
9124619 TGGTTTCACCCTT-GTTAACCTTCTTTCGACTTA
1 -GGTTTCA-CCTTAG-TAACCTTCTTTCGACTTA
*
9124652 GGTTTCACCTTGGTCAACCTTCTTTCGACTTA
1 GGTTTCACCTTAGT-AACCTTCTTTCGACTTA
9124684 G
1 G
9124685 ATTACGACTT
Statistics
Matches: 79, Mismatches: 9, Indels: 22
0.72 0.08 0.20
Matches are distributed among these distances:
30 4 0.05
31 7 0.09
32 43 0.54
33 2 0.03
34 11 0.14
35 7 0.09
36 5 0.06
ACGTcount: A:0.17, C:0.25, G:0.17, T:0.41
Consensus pattern (31 bp):
GGTTTCACCTTAGTAACCTTCTTTCGACTTA
Found at i:9124645 original size:132 final size:132
Alignment explanation
Indices: 9124342--9124657 Score: 416
Period size: 132 Copynumber: 2.4 Consensus size: 132
9124332 CTAATTGTCC
* ** *
9124342 TTAGTTGACGTGATGGTTTTGCCCTAGTCAACCTTATTTCGACTTAGGTTTCGCTGTGGTCACCT
1 TTAGTTGACGTGATGGTTTTGCCCTAGTCAACCTTCTTTCGACTTAGGTTTCGCCCTAGTCACCT
* * * *
9124407 ATTAGTTAACATGATGGTTTCACCTTGGTGAACCTCTTTTTGACTTAGGTTTCTCCCTAGTCACC
66 ATTAGTTAACATGATGGTTTCACCTTAGTGAACCTCCTTTCGACTTAGGTTTCGCCCTAGTCACC
9124472 TA
131 TA
* * * **
9124474 TTAGTTGACATGATGATTTTGCCCTGGTCAACCACCTTTCGACTTAGGTTTCGCCCTAGTCACCT
1 TTAGTTGACGTGATGGTTTTGCCCTAGTCAACCTTCTTTCGACTTAGGTTTCGCCCTAGTCACCT
* ** * *
9124539 ATTAGTTGATGTGATGGTTTCACCTTAGTGAACCTCCTTTCGACTTAGGTTTCGCCTTAGTCACT
66 ATTAGTTAACATGATGGTTTCACCTTAGTGAACCTCCTTTCGACTTAGGTTTCGCCCTAGTCACC
9124604 TA
131 TA
* * ** * *
9124606 TTAGTTGATGTCATGGTTTCACCCTTGTTAACCTTCTTTCGACTTAGGTTTC
1 TTAGTTGACGTGATGGTTTTGCCCTAGTCAACCTTCTTTCGACTTAGGTTTC
9124658 ACCTTGGTCA
Statistics
Matches: 156, Mismatches: 28, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
132 156 1.00
ACGTcount: A:0.18, C:0.23, G:0.19, T:0.40
Consensus pattern (132 bp):
TTAGTTGACGTGATGGTTTTGCCCTAGTCAACCTTCTTTCGACTTAGGTTTCGCCCTAGTCACCT
ATTAGTTAACATGATGGTTTCACCTTAGTGAACCTCCTTTCGACTTAGGTTTCGCCCTAGTCACC
TA
Found at i:9124696 original size:32 final size:32
Alignment explanation
Indices: 9124635--9124703 Score: 97
Period size: 32 Copynumber: 2.2 Consensus size: 32
9124625 CACCCTTGTT
* *
9124635 AACCTTCTTTCGACTTAGGTTTCACCTTGGTC
1 AACCTTCTTTCGACTTAGATTACACCTTGGTC
9124667 AACCTTCTTTCGACTTAGATTACGA-CTTGGTC
1 AACCTTCTTTCGACTTAGATTAC-ACCTTGGTC
9124699 -ACCTT
1 AACCTT
9124704 TTAGTTGATG
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
31 5 0.15
32 28 0.82
33 1 0.03
ACGTcount: A:0.19, C:0.28, G:0.14, T:0.39
Consensus pattern (32 bp):
AACCTTCTTTCGACTTAGATTACACCTTGGTC
Found at i:9124804 original size:42 final size:42
Alignment explanation
Indices: 9124697--9124806 Score: 116
Period size: 41 Copynumber: 2.6 Consensus size: 42
9124687 TACGACTTGG
* * *
9124697 TCACCTTTTAGTTGATGTGATGGTTTCGCATTAGTCAACATC
1 TCACTTTTTAGTTGACGTAATGGTTTCGCATTAGTCAACATC
* * * * *
9124739 TCA-TTCTTT-CTTGACGTAATGGTTTTGCCTTAGTCAACTTT
1 TCACTT-TTTAGTTGACGTAATGGTTTCGCATTAGTCAACATC
*
9124780 TCACTTTTTAGTTGACATAATGGTTTC
1 TCACTTTTTAGTTGACGTAATGGTTTC
9124807 ATCCTGGTCA
Statistics
Matches: 54, Mismatches: 11, Indels: 6
0.76 0.15 0.08
Matches are distributed among these distances:
41 32 0.59
42 22 0.41
ACGTcount: A:0.20, C:0.18, G:0.16, T:0.45
Consensus pattern (42 bp):
TCACTTTTTAGTTGACGTAATGGTTTCGCATTAGTCAACATC
Found at i:9126857 original size:6 final size:7
Alignment explanation
Indices: 9126838--9126867 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
9126828 TTGATATGAT
9126838 TAAAAAA
1 TAAAAAA
9126845 GTAAAAAA
1 -TAAAAAA
9126853 TAAAAAA
1 TAAAAAA
9126860 TAAAAAA
1 TAAAAAA
9126867 T
1 T
9126868 TATTATTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 15 0.68
8 7 0.32
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (7 bp):
TAAAAAA
Found at i:9129401 original size:33 final size:32
Alignment explanation
Indices: 9129361--9129436 Score: 84
Period size: 34 Copynumber: 2.3 Consensus size: 32
9129351 TTCTAATATA
*
9129361 TTTATATTTATT-TTATTTGAT-ATTTAAAAAT
1 TTTATATTTATTAATATTT-ATAATTTAAAAAT
* *
9129392 TTTGGATATTAATTAATATTTATAATTTTAAAAT
1 TTT--ATATTTATTAATATTTATAATTTAAAAAT
9129426 TTTATATTTAT
1 TTTATATTTAT
9129437 GCATAAATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
31 3 0.08
32 7 0.19
33 10 0.27
34 17 0.46
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (32 bp):
TTTATATTTATTAATATTTATAATTTAAAAAT
Found at i:9130801 original size:9 final size:9
Alignment explanation
Indices: 9130787--9130816 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
9130777 TCTATATAAG
9130787 TTTTATTCT
1 TTTTATTCT
9130796 TTTTATTC-
1 TTTTATTCT
9130804 TTTTATTCT
1 TTTTATTCT
9130813 TTTT
1 TTTT
9130817 TGTCTTTTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTTATTCT
Found at i:9133746 original size:22 final size:23
Alignment explanation
Indices: 9133720--9133771 Score: 61
Period size: 24 Copynumber: 2.3 Consensus size: 23
9133710 AGGTAGATCT
* *
9133720 TATAAAATCA-ATGAGATTATTA
1 TATAAAACCACATGAGATAATTA
*
9133742 TATAAAACCACTATGATATAATTA
1 TATAAAACCAC-ATGAGATAATTA
9133766 TATAAA
1 TATAAA
9133772 TATAAAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 9 0.36
24 16 0.64
ACGTcount: A:0.52, C:0.08, G:0.06, T:0.35
Consensus pattern (23 bp):
TATAAAACCACATGAGATAATTA
Found at i:9136021 original size:45 final size:45
Alignment explanation
Indices: 9135970--9136060 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 45
9135960 TAAATCAGTG
* *
9135970 TCAGGTTTATCATTCTCAAAGGTTGAACGAGTAACTGGGCCCAAC
1 TCAGGTTTATCATTCTCAAAGGTTGAACAAGTAACTGGACCCAAC
* **
9136015 TCAGGTTTCTCATTCTCTGAGGTTGAACAAGTAACTGGACCCAAC
1 TCAGGTTTATCATTCTCAAAGGTTGAACAAGTAACTGGACCCAAC
9136060 T
1 T
9136061 TTATTTGATG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (45 bp):
TCAGGTTTATCATTCTCAAAGGTTGAACAAGTAACTGGACCCAAC
Found at i:9137370 original size:24 final size:23
Alignment explanation
Indices: 9137334--9137385 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
9137324 AAGAAATATT
* *
9137334 AAAAATTATTTTTTAAAAAAATAA
1 AAAAAGTAATTTTT-AAAAAATAA
**
9137358 AAAAAGTAATTTTTTTAAAATAA
1 AAAAAGTAATTTTTAAAAAATAA
9137381 AAAAA
1 AAAAA
9137386 ATTAAAATCT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
23 12 0.50
24 12 0.50
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (23 bp):
AAAAAGTAATTTTTAAAAAATAA
Found at i:9137925 original size:19 final size:20
Alignment explanation
Indices: 9137896--9137934 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
9137886 TTAAGTCTTT
*
9137896 TATATTTTTGATATATTAAA
1 TATATTTTTGACATATTAAA
9137916 TATA-TTTTGACATATTAAA
1 TATATTTTTGACATATTAAA
9137935 CAAGCATGCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (20 bp):
TATATTTTTGACATATTAAA
Found at i:9138156 original size:122 final size:122
Alignment explanation
Indices: 9137918--9138149 Score: 335
Period size: 122 Copynumber: 1.9 Consensus size: 122
9137908 ATATTAAATA
* *
9137918 TATTTTGACATATTAAACAAGCATGCCGTAAAAAATTAATAATATCAAAAATCTTAAACAATATC
1 TATTTTGACATATTAAACAAGCATGCCATAAAAAATTAATAATATCAAAAATCTCAAACAATATC
*
9137983 AAGAGACATCTAAACGAACATTTCATATTAAACAAAAAATATAACCCAAAACTATGT
66 AAAAGACATCTAAACGAACATTTCATATTAAACAAAAAATATAACCCAAAACTATGT
9138040 TATTTTGACATATTAAACAAGCATG-CATAAAAAAATTAATAATATCAAAAATCTCAAACAATA-
1 TATTTTGACATATTAAACAAGCATGCCAT-AAAAAATTAATAATATCAAAAATCTCAAACAATAT
** * * * *
9138103 CTAAAAGGTATTTAAA-TAAGCATTTTATATTAAATAAAAAATATAAC
65 C-AAAAGACATCTAAACGAA-CATTTCATATTAAACAAAAAATATAAC
9138150 TTAAAACCAT
Statistics
Matches: 98, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
121 5 0.05
122 93 0.95
ACGTcount: A:0.52, C:0.13, G:0.06, T:0.29
Consensus pattern (122 bp):
TATTTTGACATATTAAACAAGCATGCCATAAAAAATTAATAATATCAAAAATCTCAAACAATATC
AAAAGACATCTAAACGAACATTTCATATTAAACAAAAAATATAACCCAAAACTATGT
Found at i:9138454 original size:12 final size:12
Alignment explanation
Indices: 9138433--9138462 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
9138423 TCCTTCGTTC
*
9138433 TTTTTCTTTCCT
1 TTTTTTTTTCCT
9138445 TTTTTTTTTCCT
1 TTTTTTTTTCCT
9138457 TTTTTT
1 TTTTTT
9138463 CCTTCATTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (12 bp):
TTTTTTTTTCCT
Found at i:9139170 original size:21 final size:20
Alignment explanation
Indices: 9139146--9139184 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
9139136 AATATTTTAA
9139146 TTATTTTAATTTAATTAAATT
1 TTATTTTAATTT-ATTAAATT
*
9139167 TTATTTTACTTTATTAAA
1 TTATTTTAATTTATTAAA
9139185 AATTAATAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (20 bp):
TTATTTTAATTTATTAAATT
Found at i:9140542 original size:82 final size:82
Alignment explanation
Indices: 9140405--9140563 Score: 241
Period size: 82 Copynumber: 1.9 Consensus size: 82
9140395 GTTAAGAAGA
* * *
9140405 TTAATAACAAGACTTTGGTGATCTATAGTTATAGGAGCATGGGAGTTGGGAAAATTGTAATA-AT
1 TTAATAACAAGACTTTGGTGATCTATAGTTATAGGAGCATGGGAGCTGGAAAAATTGTAA-ACAA
9140469 CTTGAAAAGTGGATAATG
65 CTTGAAAAGTGGATAATG
* *
9140487 TTAATAACAAGTCTTTGGTGATTTATAGTTATAAGG-GCATGGGAGCTGGAAAAATTGTAAACAA
1 TTAATAACAAGACTTTGGTGATCTATAGTTAT-AGGAGCATGGGAGCTGGAAAAATTGTAAACAA
9140551 CTTGAAAAGTGGA
65 CTTGAAAAGTGGA
9140564 AAATAATGTG
Statistics
Matches: 70, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
81 1 0.01
82 66 0.94
83 3 0.04
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.31
Consensus pattern (82 bp):
TTAATAACAAGACTTTGGTGATCTATAGTTATAGGAGCATGGGAGCTGGAAAAATTGTAAACAAC
TTGAAAAGTGGATAATG
Found at i:9144801 original size:16 final size:14
Alignment explanation
Indices: 9144756--9144807 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
9144746 AATGTATTTA
*
9144756 TATATTAAGATATAT
1 TATATTATGATAT-T
*
9144771 AATATTATGATATT
1 TATATTATGATATT
9144785 TATATTATGTAATATT
1 TATATTATG--ATATT
*
9144801 TAAATTA
1 TATATTA
9144808 ATAGATAACA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
14 9 0.29
15 11 0.35
16 11 0.35
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (14 bp):
TATATTATGATATT
Found at i:9145175 original size:134 final size:133
Alignment explanation
Indices: 9144929--9145200 Score: 307
Period size: 134 Copynumber: 2.0 Consensus size: 133
9144919 TTATTTATGA
* * * *
9144929 ATATTATTAATACTTAATTTTATATAATTACTATATACTTCATGTTACTGTATTGCTATATAAAT
1 ATATTATTAATACTTAAGTTTATATAATTACTATATACTTCATATTACTATATTACTATATAAAT
* * * * * * * *
9144994 ATTAATTAATTTTATTAAATTATACTTTTAATACATACATTCTATATTTACTACATGTAATACAT
66 ATTAATTAATTATACTAAATTACACTGTTAATAAATACACTCCATATTTACTACATGCAATACAT
9145059 ACAT
131 -CAT
* *
9145063 ATATTATTAATATTTAAGTTTATA-AACTTAGC-ATATACTTCATATTATTATATTACTATATAA
1 ATATTATTAATACTTAAGTTTATATAA-TTA-CTATATACTTCATATTACTATATTACTATATAA
* ** * *
9145126 ATATTAATT-GTTAATACTAAATTACACTGTTAATAAATTTACTCCATATTTAGTATATGCAATA
64 ATATTAATTAATT-ATACTAAATTACACTGTTAATAAATACACTCCATATTTACTACATGCAATA
*
9145190 CATCTT
128 CATCAT
9145196 ATATT
1 ATATT
9145201 CACTATACAC
Statistics
Matches: 115, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
133 11 0.10
134 103 0.90
135 1 0.01
ACGTcount: A:0.39, C:0.10, G:0.04, T:0.47
Consensus pattern (133 bp):
ATATTATTAATACTTAAGTTTATATAATTACTATATACTTCATATTACTATATTACTATATAAAT
ATTAATTAATTATACTAAATTACACTGTTAATAAATACACTCCATATTTACTACATGCAATACAT
CAT
Found at i:9146155 original size:15 final size:16
Alignment explanation
Indices: 9146135--9146170 Score: 65
Period size: 15 Copynumber: 2.3 Consensus size: 16
9146125 AATATTTGAA
9146135 TTTTATGGTTAATAT-
1 TTTTATGGTTAATATG
9146150 TTTTATGGTTAATATG
1 TTTTATGGTTAATATG
9146166 TTTTA
1 TTTTA
9146171 AGTTAAATCT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 15 0.75
16 5 0.25
ACGTcount: A:0.25, C:0.00, G:0.14, T:0.61
Consensus pattern (16 bp):
TTTTATGGTTAATATG
Found at i:9146175 original size:15 final size:15
Alignment explanation
Indices: 9146135--9146176 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
9146125 AATATTTGAA
*
9146135 TTTTATGGTTAATAT
1 TTTTATAGTTAATAT
*
9146150 TTTTATGGTTAATAT
1 TTTTATAGTTAATAT
9146165 GTTTTA-AGTTAA
1 -TTTTATAGTTAA
9146177 ATCTAATTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 20 0.80
16 5 0.20
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTTATAGTTAATAT
Found at i:9146952 original size:20 final size:21
Alignment explanation
Indices: 9146922--9146966 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
9146912 TCAAAGCTCA
9146922 TTTAAATATTT-AAAATAATAT
1 TTTAAATATTTAAAAATAAT-T
9146943 TTTAAA-ATTTAAAAATAATT
1 TTTAAATATTTAAAAATAATT
9146963 TTTA
1 TTTA
9146967 TTTTAATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 9 0.39
21 14 0.61
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (21 bp):
TTTAAATATTTAAAAATAATT
Found at i:9147520 original size:6 final size:6
Alignment explanation
Indices: 9147509--9147566 Score: 82
Period size: 6 Copynumber: 9.7 Consensus size: 6
9147499 TTTTTTATTA
* *
9147509 TTAATT TTAATT TT-ATT ATAATT ATATATT TTAATT TTAATT TTAATT
1 TTAATT TTAATT TTAATT TTAATT TTA-ATT TTAATT TTAATT TTAATT
9147557 TTAATT TTAA
1 TTAATT TTAA
9147567 AATTATTTTT
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
5 4 0.08
6 39 0.81
7 5 0.10
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (6 bp):
TTAATT
Found at i:9147576 original size:18 final size:18
Alignment explanation
Indices: 9147508--9147578 Score: 61
Period size: 18 Copynumber: 3.6 Consensus size: 18
9147498 TTTTTTTATT
9147508 ATTAATTTTAATTTTATTATA
1 ATTAATTTTAATTTTA--A-A
*
9147529 ATTATATATTTTAATTTTAAT
1 A-T-TA-ATTTTAATTTTAAA
*
9147550 TTTAATTTTAATTTTAAA
1 ATTAATTTTAATTTTAAA
*
9147568 ATTATTTTTAA
1 ATTAATTTTAA
9147579 ATGTTATTGT
Statistics
Matches: 42, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
18 22 0.52
19 2 0.05
20 1 0.02
21 1 0.02
22 2 0.05
23 2 0.05
24 12 0.29
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
ATTAATTTTAATTTTAAA
Found at i:9147781 original size:27 final size:25
Alignment explanation
Indices: 9147744--9147801 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 25
9147734 GTAAGTTACA
* *
9147744 TAAAAAAATTAATATTATT-AATTAT
1 TAAAAAAATTAA-AATATTAAAATAT
9147769 TAAATAAATATTAAAATATTAAAATAT
1 TAAA-AAA-ATTAAAATATTAAAATAT
9147796 TAAAAA
1 TAAAAA
9147802 GTACGAGACT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
25 4 0.14
26 10 0.36
27 14 0.50
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (25 bp):
TAAAAAAATTAAAATATTAAAATAT
Found at i:9147787 original size:8 final size:8
Alignment explanation
Indices: 9147774--9147800 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
9147764 ATTATTAAAT
9147774 AAATATTA
1 AAATATTA
9147782 AAATATTA
1 AAATATTA
9147790 AAATATTA
1 AAATATTA
9147798 AAA
1 AAA
9147801 AGTACGAGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (8 bp):
AAATATTA
Found at i:9148652 original size:14 final size:14
Alignment explanation
Indices: 9148629--9148658 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
9148619 AAAAATATAT
9148629 TTATTCTTAAATTA
1 TTATTCTTAAATTA
*
9148643 TTATTTTTAAATTA
1 TTATTCTTAAATTA
9148657 TT
1 TT
9148659 TTTAAATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (14 bp):
TTATTCTTAAATTA
Found at i:9148778 original size:25 final size:25
Alignment explanation
Indices: 9148744--9148854 Score: 91
Period size: 26 Copynumber: 4.3 Consensus size: 25
9148734 AAAATAATAA
*
9148744 AAATTTAATTAATTTAATTATTATT
1 AAATTAAATTAATTTAATTATTATT
* *
9148769 AAATTAAATTATATTAAATTATATTTT
1 AAATTAAATTA-ATTTAATTAT-TATT
* * * *
9148796 AATTTAAGTGAATGTTAAATATT-TT
1 AAATTAAATTAAT-TTAATTATTATT
9148821 AAATTAATTATTAATTTAATTA-TATT
1 AAATTAA--ATTAATTTAATTATTATT
*
9148847 AATTTAAA
1 AAATTAAA
9148855 AAAATTATTA
Statistics
Matches: 67, Mismatches: 13, Indels: 13
0.72 0.14 0.14
Matches are distributed among these distances:
24 1 0.01
25 19 0.28
26 26 0.39
27 21 0.31
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (25 bp):
AAATTAAATTAATTTAATTATTATT
Found at i:9148839 original size:26 final size:24
Alignment explanation
Indices: 9148744--9148854 Score: 78
Period size: 25 Copynumber: 4.3 Consensus size: 24
9148734 AAAATAATAA
* *
9148744 AAATTTAATTAATTTAATTATTATT
1 AAATTAAATTAATTTAAATATT-TT
*
9148769 AAATTAAATTATATTAAATTATATTTT
1 AAATTAAATTA-ATTTAA--ATATTTT
* * *
9148796 AATTTAAGTGAATGTTAAATATTTT
1 AAATTAAATTAAT-TTAAATATTTT
* *
9148821 AAATTAATTATTAATTTAATTATATT
1 AAATTAA--ATTAATTTAAATATTTT
*
9148847 AATTTAAA
1 AAATTAAA
9148855 AAAATTATTA
Statistics
Matches: 67, Mismatches: 13, Indels: 13
0.72 0.14 0.14
Matches are distributed among these distances:
24 1 0.01
25 23 0.34
26 22 0.33
27 17 0.25
28 4 0.06
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (24 bp):
AAATTAAATTAATTTAAATATTTT
Found at i:9148865 original size:26 final size:26
Alignment explanation
Indices: 9148830--9148906 Score: 63
Period size: 26 Copynumber: 3.0 Consensus size: 26
9148820 TAAATTAATT
9148830 ATTAATTTAATTATATTAATTTAAAAAA
1 ATTAA-TTAA-TATATTAATTTAAAAAA
* **
9148858 ATT-ATTAAAAATATT--TTTATTTAAA
1 ATTAATT-AATATATTAATTTA-AAAAA
9148883 ATTAATTAAT-TATTAATTTAAAAA
1 ATTAATTAATATATTAATTTAAAAA
9148907 TTTAATGATA
Statistics
Matches: 38, Mismatches: 6, Indels: 13
0.67 0.11 0.23
Matches are distributed among these distances:
24 8 0.21
25 10 0.26
26 14 0.37
27 3 0.08
28 3 0.08
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (26 bp):
ATTAATTAATATATTAATTTAAAAAA
Found at i:9152846 original size:12 final size:12
Alignment explanation
Indices: 9152829--9152858 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
9152819 TTTCTGGTCC
9152829 TTTCTTGATTGA
1 TTTCTTGATTGA
9152841 TTTCTTGATTGA
1 TTTCTTGATTGA
9152853 TTTCTT
1 TTTCTT
9152859 TTTCCTCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.13, C:0.10, G:0.13, T:0.63
Consensus pattern (12 bp):
TTTCTTGATTGA
Found at i:9158361 original size:15 final size:15
Alignment explanation
Indices: 9158321--9158384 Score: 58
Period size: 15 Copynumber: 4.2 Consensus size: 15
9158311 ATGTATATGC
9158321 AAATAT-AAATTTTT
1 AAATATAAAATTTTT
*
9158335 AATATTTAAAATTTTT
1 AA-ATATAAAATTTTT
* ***
9158351 AAATATCAAATAAAT
1 AAATATAAAATTTTT
9158366 AAATATAAAATTATTT
1 AAATATAAAATT-TTT
9158382 AAA
1 AAA
9158385 AATATAATAA
Statistics
Matches: 37, Mismatches: 10, Indels: 4
0.73 0.20 0.08
Matches are distributed among these distances:
14 2 0.05
15 21 0.57
16 14 0.38
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (15 bp):
AAATATAAAATTTTT
Found at i:9161443 original size:16 final size:16
Alignment explanation
Indices: 9161422--9161624 Score: 117
Period size: 16 Copynumber: 12.2 Consensus size: 16
9161412 GTTTTAGTTA
9161422 ATTTTAAATTAAAATT
1 ATTTTAAATTAAAATT
* *
9161438 ATTTTAAATTTATATT
1 ATTTTAAATTAAAATT
*
9161454 ATTTTAAATTTAAATT
1 ATTTTAAATTAAAATT
* *
9161470 -TTTTAAGTTTAAATT
1 ATTTTAAATTAAAATT
9161485 ATTTTAAATTTAAAA-T
1 ATTTTAAA-TTAAAATT
9161501 ATTTTTAAATTTTAAATGAGTT
1 A-TTTTAAA--TTAAA--A-TT
* *
9161523 ATTTTGAATTATTAATT
1 ATTTTAAATTA-AAATT
* *
9161540 TTTTTATATATTTAAATT
1 ATTTTA-A-ATTAAAATT
*
9161558 ATATTAAATTAAATATT
1 ATTTTAAATTAAA-ATT
* *
9161575 ATTTAAAAAT-AAATT
1 ATTTTAAATTAAAATT
* * *
9161590 -TTTAAAATTTATATT
1 ATTTTAAATTAAAATT
* *
9161605 ATTTAATAATAAAAATT
1 ATTTTA-AATTAAAATT
9161622 ATT
1 ATT
9161625 ACATAGATAT
Statistics
Matches: 149, Mismatches: 23, Indels: 29
0.74 0.11 0.14
Matches are distributed among these distances:
14 8 0.05
15 21 0.14
16 49 0.33
17 39 0.26
18 16 0.11
19 6 0.04
20 2 0.01
21 6 0.04
22 2 0.01
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (16 bp):
ATTTTAAATTAAAATT
Found at i:9161484 original size:47 final size:49
Alignment explanation
Indices: 9161423--9161517 Score: 140
Period size: 47 Copynumber: 2.0 Consensus size: 49
9161413 TTTTAGTTAA
* *
9161423 TTTTAAATTAAAATTATTTTAAATTTATATTA-TTTTAAA-TTTAAATT
1 TTTTAAATTAAAATTATTTTAAATTTAAAATATTTTTAAATTTTAAATT
* *
9161470 TTTTAAGTTTAAATTATTTTAAATTTAAAATATTTTTAAATTTTAAAT
1 TTTTAAATTAAAATTATTTTAAATTTAAAATATTTTTAAATTTTAAAT
9161518 GAGTTATTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
47 28 0.67
48 7 0.17
49 7 0.17
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (49 bp):
TTTTAAATTAAAATTATTTTAAATTTAAAATATTTTTAAATTTTAAATT
Found at i:9161486 original size:31 final size:31
Alignment explanation
Indices: 9161422--9161610 Score: 139
Period size: 32 Copynumber: 5.7 Consensus size: 31
9161412 GTTTTAGTTA
* *
9161422 ATTTTAAATTAAAATTATTTTAAATTTATATT
1 ATTTTAAATTTAAATT-TTTTAAATTTAAATT
*
9161454 ATTTTAAATTTAAATTTTTTAAGTTTAAATT
1 ATTTTAAATTTAAATTTTTTAAATTTAAATT
9161485 ATTTTAAATTTAAAATATTTTTAAATTTTAAATGAGTT
1 ATTTTAAATTT-AAAT-TTTTTAAA-TTT-AA--A-TT
* *
9161523 ATTTTGAATTATTAATTTTTTTATATATTTAAATT
1 ATTTT-AAAT-TTAAATTTTTTA-A-ATTTAAATT
* **
9161558 ATATTAAA-TTAAATATTATTTAAAAATAAATT
1 ATTTTAAATTTAAAT-TT-TTTAAATTTAAATT
* * *
9161590 -TTTAAAATTTATATTATTTAA
1 ATTTTAAATTTAAATTTTTTAA
9161611 TAATAAAAAT
Statistics
Matches: 128, Mismatches: 15, Indels: 30
0.74 0.09 0.17
Matches are distributed among these distances:
30 5 0.04
31 30 0.23
32 36 0.28
33 10 0.08
34 9 0.07
35 8 0.06
36 1 0.01
37 1 0.01
38 15 0.12
39 10 0.08
40 3 0.02
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (31 bp):
ATTTTAAATTTAAATTTTTTAAATTTAAATT
Found at i:9161587 original size:17 final size:17
Alignment explanation
Indices: 9161567--9161624 Score: 52
Period size: 17 Copynumber: 3.6 Consensus size: 17
9161557 TATATTAAAT
9161567 TAAATATTATTTAAAAA
1 TAAATATTATTTAAAAA
9161584 T-AA-ATT-TTT-AAAA
1 TAAATATTATTTAAAAA
** *
9161597 TTTATATTATTTAATAA
1 TAAATATTATTTAAAAA
*
9161614 TAAAAATTATT
1 TAAATATTATT
9161625 ACATAGATAT
Statistics
Matches: 32, Mismatches: 5, Indels: 8
0.71 0.11 0.18
Matches are distributed among these distances:
13 5 0.16
14 4 0.12
15 6 0.19
16 5 0.16
17 12 0.38
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TAAATATTATTTAAAAA
Found at i:9161953 original size:40 final size:40
Alignment explanation
Indices: 9161909--9162042 Score: 155
Period size: 40 Copynumber: 3.4 Consensus size: 40
9161899 GAACTCTACA
*
9161909 GAAGAATCTAGAACACTT-TAGAATGTTCTAGAATATCGTG
1 GAAGACTCTAGAACA-TTCTAGAATGTTCTAGAATATCGTG
* *
9161949 GAAGACTCTGGAAGATTCTAGAATGTTCTAGAATATCGTG
1 GAAGACTCTAGAACATTCTAGAATGTTCTAGAATATCGTG
* * * *
9161989 GAAGGCTCTGGAAGATTCTAGAATGTTCCAGAATAAT-GTG
1 GAAGACTCTAGAACATTCTAGAATGTTCTAGAAT-ATCGTG
**
9162029 GAAGGTTCTAGAAC
1 GAAGACTCTAGAAC
9162043 TTTATGGAAG
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
39 2 0.02
40 80 0.95
41 2 0.02
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (40 bp):
GAAGACTCTAGAACATTCTAGAATGTTCTAGAATATCGTG
Found at i:9162325 original size:18 final size:18
Alignment explanation
Indices: 9162285--9162329 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 18
9162275 TAAGAAAGGT
9162285 GATAGAG-GAATATAGAG
1 GATAGAGAGAATATAGAG
9162302 GAATAGAGAG-ATATAGAG
1 G-ATAGAGAGAATATAGAG
9162320 AGATAGAGAG
1 -GATAGAGAG
9162330 GTAAGAAAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 1 0.04
18 22 0.88
19 2 0.08
ACGTcount: A:0.49, C:0.00, G:0.36, T:0.16
Consensus pattern (18 bp):
GATAGAGAGAATATAGAG
Found at i:9166351 original size:40 final size:40
Alignment explanation
Indices: 9166307--9166411 Score: 176
Period size: 40 Copynumber: 2.6 Consensus size: 40
9166297 GAACACTTTG
9166307 GAATGTTCTAGAATATCGTGGAAGGCTCTGGAAGATTCTA
1 GAATGTTCTAGAATATCGTGGAAGGCTCTGGAAGATTCTA
*
9166347 GAATGTTTTAGAATATCGTGGAAGGCTCTGGAAGATTCTA
1 GAATGTTCTAGAATATCGTGGAAGGCTCTGGAAGATTCTA
*
9166387 GAATGTTCCAGAATAAT-GTGGAAGG
1 GAATGTTCTAGAAT-ATCGTGGAAGG
9166412 TTCTAGAACT
Statistics
Matches: 61, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
40 59 0.97
41 2 0.03
ACGTcount: A:0.31, C:0.10, G:0.29, T:0.30
Consensus pattern (40 bp):
GAATGTTCTAGAATATCGTGGAAGGCTCTGGAAGATTCTA
Found at i:9166465 original size:20 final size:20
Alignment explanation
Indices: 9166427--9166465 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
9166417 GAACTTTATG
**
9166427 GAAGATTATGGAATGTTCTA
1 GAAGATTATGGAAAATTCTA
*
9166447 GAAGCTTATGGAAAATTCT
1 GAAGATTATGGAAAATTCT
9166466 CCAAGACTAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.36, C:0.08, G:0.23, T:0.33
Consensus pattern (20 bp):
GAAGATTATGGAAAATTCTA
Found at i:9166703 original size:18 final size:18
Alignment explanation
Indices: 9166663--9166707 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 18
9166653 TAAGAAAGGT
9166663 GATAGAG-GAATATAGAG
1 GATAGAGAGAATATAGAG
9166680 GAATAGAGAG-ATATAGAG
1 G-ATAGAGAGAATATAGAG
9166698 AGATAGAGAG
1 -GATAGAGAG
9166708 GTAAGAAAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 1 0.04
18 22 0.88
19 2 0.08
ACGTcount: A:0.49, C:0.00, G:0.36, T:0.16
Consensus pattern (18 bp):
GATAGAGAGAATATAGAG
Found at i:9168822 original size:13 final size:13
Alignment explanation
Indices: 9168804--9168829 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
9168794 TACAGCAAGT
9168804 ATGTATCGATACA
1 ATGTATCGATACA
9168817 ATGTATCGATACA
1 ATGTATCGATACA
9168830 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:9171080 original size:21 final size:21
Alignment explanation
Indices: 9171047--9171091 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
9171037 TTGCAAGTTG
*
9171047 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
9171069 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
9171089 AAA
1 AAA
9171092 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:9175133 original size:52 final size:52
Alignment explanation
Indices: 9175052--9175172 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
9175042 TGAAGAGTTA
*
9175052 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
*
9175104 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
9175156 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
9175173 AAGATCAGTG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:9175185 original size:52 final size:51
Alignment explanation
Indices: 9175052--9175192 Score: 212
Period size: 52 Copynumber: 2.7 Consensus size: 51
9175042 TGAAGAGTTA
9175052 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
* *
9175104 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
*
9175156 CTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
9175193 ATGTATCGAT
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
51 2 0.02
52 80 0.98
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (51 bp):
CTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:9175199 original size:13 final size:13
Alignment explanation
Indices: 9175181--9175205 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9175171 CAAAGATCAG
9175181 TGTATCGATACAA
1 TGTATCGATACAA
9175194 TGTATCGATACA
1 TGTATCGATACA
9175206 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:9175289 original size:13 final size:13
Alignment explanation
Indices: 9175271--9175295 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9175261 CAAAAAAATA
9175271 TGTATCGATACAT
1 TGTATCGATACAT
9175284 TGTATCGATACA
1 TGTATCGATACA
9175296 AAATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:9175291 original size:33 final size:33
Alignment explanation
Indices: 9175249--9175315 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
9175239 AGTAGCTTAA
9175249 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
***
9175282 ATTGTATCGATACAAAATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
9175315 A
1 A
9175316 AATCGTTGAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:9176401 original size:49 final size:49
Alignment explanation
Indices: 9176192--9177077 Score: 1092
Period size: 49 Copynumber: 18.7 Consensus size: 49
9176182 AAAAGGATGT
* *
9176192 CAATGTGCTGATTCAAGGCCAGCTATATTGAACTTAAAGATGGAAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGC
* * *
9176244 CGATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
9176287 CAATGTGCTGATTCACGGCCAGCTACATTGGACTTAAAGGTG-AGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
9176335 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
9176384 CAATGTGTTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG-AGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
9176432 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAAATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
9176481 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGATGATGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * *
9176530 CAATATGTTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
9176573 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
9176622 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
9176665 CAATGTGTTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
9176714 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
9176757 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
9176806 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
9176849 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
9176898 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGC
* * *
9176950 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
9176993 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
9177042 CAATATGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
9177078 GAAGGGTTGC
Statistics
Matches: 722, Mismatches: 71, Indels: 85
0.82 0.08 0.10
Matches are distributed among these distances:
43 225 0.31
45 4 0.01
47 5 0.01
48 93 0.13
49 325 0.45
52 70 0.10
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (49 bp):
CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
Found at i:9176601 original size:92 final size:92
Alignment explanation
Indices: 9176183--9177077 Score: 1122
Period size: 92 Copynumber: 9.5 Consensus size: 92
9176173 AGATGATGAA
* * * * *
9176183 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTATATTGAACTTAAAGATGGAAAAGGTGCCGAT
1 AAAGG-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGATGCCAAT
9176248 ATGCTGATTCAAGGCCAGCTATATTGGACTT
62 ATGCTGATTCAAGGCCAGCTATATTGGACTT
* * * *
9176279 AAAGGTGCCAATGTGCTGATTCACGGCCAGCTACATTGGACTTAAAGGTG-AGGTGCCAATGTGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGC
*
9176343 TGATTCAAGGCCAGCTACATTGGACTT
66 TGATTCAAGGCCAGCTATATTGGACTT
* * *
9176370 AAAGATGAAGGTGCCAATGTGTTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG-AGGTGCCA
1 ----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCA
* *
9176434 ATGTGCTGATTCAAGGCCAGCTACATTGGACTT
60 ATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
9176467 AAAAATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGATGATGCCA
1 ----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCA
* *
9176532 ATATGTTGATTCAAGGCCAGCGATATTGGACTT
60 ATATGCTGATTCAAGGCCAGCTATATTGGACTT
9176565 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGC
*
9176630 TGATTCAAGGCCAGCGATATTGGACTT
66 TGATTCAAGGCCAGCTATATTGGACTT
*
9176657 AAAGGTGCCAATGTGTTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGC
*
9176722 TGATTCAAGGCCAGCGATATTGGACTT
66 TGATTCAAGGCCAGCTATATTGGACTT
9176749 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGC
*
9176814 TGATTCAAGGCCAGCGATATTGGACTT
66 TGATTCAAGGCCAGCTATATTGGACTT
* * *
9176841 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATGTGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGC
* *
9176906 TGAGTCAAGGCCAGCTACATTGGACTTAAAGAT
66 TGATTCAAGGCCAGCTATATTGGAC-T-----T
* * * *
9176939 GGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G--G-TGCCAATG
1 ---AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
* *
9176998 TGCTGAGTCAAGGCCAGCTACATTGGACTT
63 TGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
9177028 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 -AA-A-G--G-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
9177078 GAAGGGTTGC
Statistics
Matches: 740, Mismatches: 37, Indels: 47
0.90 0.04 0.06
Matches are distributed among these distances:
87 3 0.00
88 1 0.00
89 2 0.00
91 39 0.05
92 390 0.53
93 1 0.00
94 3 0.00
95 76 0.10
96 6 0.01
97 140 0.19
98 36 0.05
99 1 0.00
100 2 0.00
101 40 0.05
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (92 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGC
TGATTCAAGGCCAGCTATATTGGACTT
Found at i:9177121 original size:33 final size:35
Alignment explanation
Indices: 9177077--9177146 Score: 126
Period size: 33 Copynumber: 2.1 Consensus size: 35
9177067 TATTGGGCTT
9177077 AGAAGGGTTGCCACCGACTTGTGTGGGCTTT-GGA
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
9177111 AGAA-GGTTGCCACCGACTTGTGTGGGCTTTAGGA
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
9177145 AG
1 AG
9177147 GGAGAAAGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
33 26 0.74
34 9 0.26
ACGTcount: A:0.20, C:0.17, G:0.37, T:0.26
Consensus pattern (35 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGGA
Found at i:9177170 original size:38 final size:36
Alignment explanation
Indices: 9177131--9178270 Score: 830
Period size: 34 Copynumber: 34.6 Consensus size: 36
9177121 CACCGACTTG
* *
9177131 TGTGGGCTTTAGGAAGGGAGAAAGA-TGCCACGGAGT
1 TGTGGGCTTTA-AAAGGGAAAAAGAGTGCCACGGAGT
*
9177167 TGTGGAC-TTAAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
* * *
9177202 TGTGGGCTTTAAAA-GAAAAAAAAGGTGCCATGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGA-GTGCCACGGAGT
* *
9177238 TGTGGAC-TT-AAAGATGAAAAA-AGTGCCACGGAGT
1 TGTGGGCTTTAAAAG-GGAAAAAGAGTGCCACGGAGT
*
9177272 TATGGGC-TTAAAA--G-----G-GTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
* *
9177299 TGTGGGC-TTAGAA-GGAAAAAGAGTGCCACAGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
*
9177333 TGTGGG-TTTAGAA-GGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
9177367 TGTGGGCTTT-------AAAAAGAGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
* * * *
9177396 CGTGGCCTTTGAAAA--GAAGAAG-GTGCCACAGAGT
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGT
* * *
9177430 TGTGGGCTTTGAAAA--GAAGAAG-GTGCCATGGAGC
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGT
9177464 TGTGGGCTTT---------AAAGAGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
* *
9177491 CGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGT
9177528 TGTGGGCTTTAAACA--GAAAAAG-GTGCCACGGAGT
1 TGTGGGCTTTAAA-AGGGAAAAAGAGTGCCACGGAGT
*
9177562 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGT
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGT
9177599 TGTGGGCTTTAAAA--GAAAAAG-GTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
*
9177632 TGTGGGCTTTAAAA-AGAAAAAG-GTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
*
9177666 TGTGGGC-TT-AAA-CG-----G-GTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
* *
9177693 TGTGGAC-TT-AAAGATGAAAAA-AGTGCCACGGAGT
1 TGTGGGCTTTAAAAG-GGAAAAAGAGTGCCACGGAGT
*
9177727 TATGGGC-TTAAAA--G-----G-GTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
* *
9177754 TGTGGGC-TTAGAA-GGAAAAAGAGTGCCACAGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
*
9177788 TGTGGG-TTTAGAA-GGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
9177822 TGTGGGCTTT-------AAAAAGAGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
* * * *
9177851 CGTGGCCTTTGAAAA--GAAGAAG-GTGCCACAGAGT
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGT
* * *
9177885 TGTGGGCTTTGAAAA--GAAGAAG-GTGCCATGGAGC
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGT
* *
9177919 TGTGGGCTTTAAAA-AGAAGAAG-GTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
9177953 TGTGGGCTTT---------AAAGAGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
* *
9177980 CGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGT
9178017 TGTGGGCTTTAAACA--GAAAAAG-GTGCCACGGAGT
1 TGTGGGCTTTAAA-AGGGAAAAAGAGTGCCACGGAGT
*
9178051 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGT
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGT
*
9178088 TGTGGGCTTTAAAA--GAAAAAG-GTGCCATGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
* *
9178121 TGTGGAC-TT-AAAGATGAAAAA-AGTGCCACGGAGT
1 TGTGGGCTTTAAAAG-GGAAAAAGAGTGCCACGGAGT
*
9178155 TATGGGC-TTAAAA--G-----G-GTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
* *
9178182 TGTGGGC-TTAGAA-GGAAAAAGAGTGCCACAGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
* *
9178216 TGTGGG-TTTAGAA-GGAAAAAGAGTGCCACAGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
* *
9178250 TGTGGG-TTTAGAAGGAAAAAA
1 TGTGGGCTTTAAAAGGGAAAAA
9178271 AGTCCCCACA
Statistics
Matches: 941, Mismatches: 67, Indels: 193
0.78 0.06 0.16
Matches are distributed among these distances:
26 6 0.01
27 133 0.14
28 3 0.00
29 55 0.06
31 3 0.00
32 9 0.01
33 50 0.05
34 443 0.47
35 81 0.09
36 62 0.07
37 96 0.10
ACGTcount: A:0.32, C:0.12, G:0.35, T:0.20
Consensus pattern (36 bp):
TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
Found at i:9177292 original size:27 final size:27
Alignment explanation
Indices: 9177260--9177313 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
9177250 GATGAAAAAA
9177260 GTGCCACGGAGTTATGGGCTTAAAAGG
1 GTGCCACGGAGTTATGGGCTTAAAAGG
* *
9177287 GTGCCACGGAGTTGTGGGCTTAGAAGG
1 GTGCCACGGAGTTATGGGCTTAAAAGG
9177314 AAAAAGAGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.22, C:0.15, G:0.41, T:0.22
Consensus pattern (27 bp):
GTGCCACGGAGTTATGGGCTTAAAAGG
Found at i:9177298 original size:61 final size:61
Alignment explanation
Indices: 9177220--9178264 Score: 508
Period size: 61 Copynumber: 16.1 Consensus size: 61
9177210 TTAAAAGAAA
* * * *
9177220 AAAAAGGTGCCATGGAGTTGTGGACTTAAAGATGAAAAA-AGTGCCACGGAGTTATGGGCTT
1 AAAAGGGTGCCACGGAGTTGTGGGCTTAAAGA-GAAAAAGAGTGCCACGGAGTTGTGGGCTT
* *
9177281 AAAAGGGTGCCACGGAGTTGTGGGCTTAGAAG-GAAAAAGAGTGCCACAGAGTTGTGGGTTT
1 AAAAGGGTGCCACGGAGTTGTGGGCTTA-AAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTT
* * * *
9177342 AGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTT-----TAAAAAGAGTGCCACGGAGTCGTGGC
1 -------AAAAGGGTGCCACGGAGTTGTGGGCTTAAAGAGAAAAAGAGTGCCACGGAGTTGTGGG
9177402 CTTT
59 C-TT
* * * *
9177406 GAAAAGAAGAAGGTGCCACAGAGTTGTGGGCTTTGAAA-AGAAGAAG-GTGCCATGGAGCTGTGG
1 ---AA-AAG--GGTGCCACGGAGTTGTGGGC-TT-AAAGAGAAAAAGAGTGCCACGGAGTTGTGG
9177469 GCTT
58 GCTT
* * *
9177473 TAAAGAGTGCCACGGAGTCGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
1 AAAAGGGTGCCACGGAGTTGTGGGC-TT--AAAGAGAAAAAGAGTGCCACGGAGTTGTGGGC-TT
* *
9177538 AAACAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTG
1 AAA-AG-----GGTGCCACGGAGTTGTGGGC-TT--AAAGAGAAAAAGAGTGCCACGGAGTTGTG
9177603 GGCTTT
57 GGC-TT
*
9177609 AAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAG-GTGCCACGGAGTTGTGGGC
1 AAAAG-----GGTGCCACGGAGTTGTGGGC-TTAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGC
9177673 TT
60 TT
* * *
9177675 AAACGGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAA-AGTGCCACGGAGTTATGGGCTT
1 AAAAGGGTGCCACGGAGTTGTGGGCTTAAAGA-GAAAAAGAGTGCCACGGAGTTGTGGGCTT
* *
9177736 AAAAGGGTGCCACGGAGTTGTGGGCTTAGAAG-GAAAAAGAGTGCCACAGAGTTGTGGGTTT
1 AAAAGGGTGCCACGGAGTTGTGGGCTTA-AAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTT
* * * *
9177797 AGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTT-----TAAAAAGAGTGCCACGGAGTCGTGGC
1 -------AAAAGGGTGCCACGGAGTTGTGGGCTTAAAGAGAAAAAGAGTGCCACGGAGTTGTGGG
9177857 CTTT
59 C-TT
* * * *
9177861 GAAAAGAAGAAGGTGCCACAGAGTTGTGGGCTTTGAAA-AGAAGAAG-GTGCCATGGAGCTGTGG
1 ---AA-AAG--GGTGCCACGGAGTTGTGGGC-TT-AAAGAGAAAAAGAGTGCCACGGAGTTGTGG
9177924 GCTTT
58 GC-TT
* *
9177929 AAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTT-------TAAAGAGTGCCACGGAGTCGTGGGC
1 ---AA-AAG--GGTGCCACGGAGTTGTGGGCTTAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGC
9177987 TTT
60 -TT
*
9177990 GAAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACAGAAAAAG-GTGCCACGGAGTTGT
1 --AAA-AG-----G-GTGCCACGGAGTTGTGGGC-TTAAAGAGAAAAAGAGTGCCACGGAGTTGT
9178054 GGGCTTT
56 GGGC-TT
* *
9178061 GAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAA-AGAAAAAG-GTGCCATGGAGTTGT
1 -AAAA--G-----G-GTGCCACGGAGTTGTGGGC-TTAAAGAGAAAAAGAGTGCCACGGAGTTGT
*
9178124 GGACTT
56 GGGCTT
* *
9178130 AAAGATGAAAAAAGTGCCACGGAGTTATGGGCTTAAA-AG-----G-GTGCCACGGAGTTGTGGG
1 AAA-A-G-----GGTGCCACGGAGTTGTGGGCTTAAAGAGAAAAAGAGTGCCACGGAGTTGTGGG
9178188 CTT
59 CTT
* * * *
9178191 AGAAGGAAAAAGAGTGCCACAGAGTTGTGGGTTTAGAAG-GAAAAAGAGTGCCACAGAGTTGTGG
1 -------AAAAGGGTGCCACGGAGTTGTGGGCTTA-AAGAGAAAAAGAGTGCCACGGAGTTGTGG
*
9178255 GTTT
58 GCTT
*
9178259 AGAAGG
1 AAAAGG
9178265 AAAAAAAGTC
Statistics
Matches: 814, Mismatches: 88, Indels: 164
0.76 0.08 0.15
Matches are distributed among these distances:
59 1 0.00
60 34 0.04
61 223 0.27
62 12 0.01
63 93 0.11
64 45 0.06
65 6 0.01
66 16 0.02
67 41 0.05
68 155 0.19
69 14 0.02
70 58 0.07
71 112 0.14
72 4 0.00
ACGTcount: A:0.32, C:0.13, G:0.35, T:0.21
Consensus pattern (61 bp):
AAAAGGGTGCCACGGAGTTGTGGGCTTAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTT
Found at i:9177691 original size:27 final size:26
Alignment explanation
Indices: 9177653--9177768 Score: 115
Period size: 27 Copynumber: 4.0 Consensus size: 26
9177643 AAAAGAAAAA
9177653 GGTGCCACGGAGTTGTGGGCTTAAACG
1 GGTGCCACGGAGTTGTGGGCTTAAA-G
*
9177680 GGTGCCACGGAGTTGTGGACTTAAAG
1 GGTGCCACGGAGTTGTGGGCTTAAAG
*
9177706 ATGAAAAAAGTGCCACGGAGTTATGGGCTTAAAAG
1 --G------GTGCCACGGAGTTGTGGGCTT-AAAG
9177741 GGTGCCACGGAGTTGTGGGCTTAGAAG
1 GGTGCCACGGAGTTGTGGGCTTA-AAG
9177768 G
1 G
9177769 AAAAAGAGTG
Statistics
Matches: 75, Mismatches: 4, Indels: 20
0.76 0.04 0.20
Matches are distributed among these distances:
26 2 0.03
27 48 0.64
28 1 0.01
33 1 0.01
34 19 0.25
35 4 0.05
ACGTcount: A:0.26, C:0.15, G:0.38, T:0.22
Consensus pattern (26 bp):
GGTGCCACGGAGTTGTGGGCTTAAAG
Found at i:9178104 original size:455 final size:438
Alignment explanation
Indices: 9177225--9178259 Score: 1283
Period size: 455 Copynumber: 2.3 Consensus size: 438
9177215 AGAAAAAAAA
* *
9177225 GGTGCCATGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAGTTATGGGCTTAAAAGGGTG
1 GGTGCCACGGAGTTATGGACTTAAAGATG----AAGTGCCACGGAGTTATGGGCTTAAAAGGGTG
9177290 CCACGGAGTTGTGGGCTTAGAAGGAAAAAGAGTGCCACAGAGTTGTGGGTTTAGAAGGAAAAAGA
62 CCACGGAGTTGTGGGCTTAGAAGGAAAAAGAGTGCCACAGAGTTGTGGGTTT---A--AAAAAGA
9177355 GTGCCACGGAGTTGTGGGCTTTAAAAAGAGTGCCACGGAGTCGTGGCCTTTGAAAAGAAGAAGGT
122 GTGCCACGGAGTTGTGGGCTTTAAAAAGAGTGCCACGGAGTCGTGGCCTTTGAAAAGAAGAAGGT
9177420 GCCACAGAGTTGTGGGCTTTGAAAAGAAGAAGGTGCCATGGAGCTGTGGGCTTT-A-AAG-A-GT
187 GCCACAGAGTTGTGGGCTTTGAAAAGAAGAAGGTGCCATGGAGCTGTGGGCTTTAAGAAGAAGGT
*
9177481 GCCACGGAGTCGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAACAGA
252 GCCACGGAGTCGTGGGCTTT----------AAAGAGTGCCACGGAGTCGTGGGCTTTAAAACAGA
9177545 AAAAG-GTGCCACGGAGTTGTGGGCTTTGAAA-AGGGAAAAAGAGTGCCACAGAGTTGTGGGCTT
307 AAAAGAGTGCCACGGAGTTGTGGGCTTT-AAACA--GAAAAAG-GTGCCACAGAGTTGTGGGCTT
*
9177608 T-AAAA-GAAAAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTG
368 TGAAAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAAG----AGGTGCCACGGAGTTGTG
*
9177670 GGCTTAAACG
429 GACTTAAACG
*
9177680 GGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAGTTATGGGCTTAAAAGGGTG
1 GGTGCCACGGAGTTATGGACTTAAAGATG----AAGTGCCACGGAGTTATGGGCTTAAAAGGGTG
9177745 CCACGGAGTTGTGGGCTTAGAAGGAAAAAGAGTGCCACAGAGTTGTGGGTTTAGAAGGAAAAAGA
62 CCACGGAGTTGTGGGCTTAGAAGGAAAAAGAGTGCCACAGAGTTGTGGGTTT---A--AAAAAGA
9177810 GTGCCACGGAGTTGTGGGCTTTAAAAAGAGTGCCACGGAGTCGTGGCCTTTGAAAAGAAGAAGGT
122 GTGCCACGGAGTTGTGGGCTTTAAAAAGAGTGCCACGGAGTCGTGGCCTTTGAAAAGAAGAAGGT
9177875 GCCACAGAGTTGTGGGCTTTGAAAAGAAGAAGGTGCCATGGAGCTGTGGGCTTTAAAAAGAAGAA
187 GCCACAGAGTTGTGGGCTTTGAAAAGAAGAAGGTGCCATGGAGCTGTGGGCTTT---AAGAAGAA
* *
9177940 GGTGCCACGGAGTTGTGGGCTTTAAAGAGTGCCACGGAGTCGTGGGCTTTGAAAAGAGAAAAAGA
249 GGTGCCACGGAGTCGTGGGCTTTAAAGAGTGCCACGGAGTCGTGGGCTTT-AAAACAGAAAAAGA
*
9178005 GTGCCACGGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGA
313 GTGCCACGGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCACAGAGTTGTGGGCTTTGAAAA-GGA
* *
9178070 AAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAGAAAAAGGTGCCATGGAGTTGTGGACTT--A--
377 AAAAGAGTGCCACAGAGTTGTGGGCTTT--AA-AAAGAGGTGCCACGGAGTTGTGGACTTAAACG
9178131 ------A---AG--AT-G----AAA-A--AAGTGCCACGGAGTTATGGGCTTAAAAGGGTGCCAC
1 GGTGCCACGGAGTTATGGACTTAAAGATGAAGTGCCACGGAGTTATGGGCTTAAAAGGGTGCCAC
9178177 GGAGTTGTGGGCTTAGAAGGAAAAAGAGTGCCACAGAGTTGTGGGTTTAGAAGGAAAAAGAGTGC
66 GGAGTTGTGGGCTTAGAAGGAAAAAGAGTGCCACAGAGTTGTGGGTTT---A--AAAAAGAGTGC
*
9178242 CACAGAGTTGTGGG-TTTA
126 CACGGAGTTGTGGGCTTTA
9178260 GAAGGAAAAA
Statistics
Matches: 551, Mismatches: 11, Indels: 64
0.88 0.02 0.10
Matches are distributed among these distances:
427 4 0.01
428 114 0.21
434 1 0.00
435 3 0.01
439 1 0.00
440 1 0.00
442 2 0.00
445 1 0.00
452 47 0.09
453 12 0.02
454 14 0.03
455 299 0.54
456 21 0.04
458 2 0.00
459 4 0.01
460 3 0.01
461 1 0.00
462 21 0.04
ACGTcount: A:0.32, C:0.13, G:0.35, T:0.21
Consensus pattern (438 bp):
GGTGCCACGGAGTTATGGACTTAAAGATGAAGTGCCACGGAGTTATGGGCTTAAAAGGGTGCCAC
GGAGTTGTGGGCTTAGAAGGAAAAAGAGTGCCACAGAGTTGTGGGTTTAAAAAAGAGTGCCACGG
AGTTGTGGGCTTTAAAAAGAGTGCCACGGAGTCGTGGCCTTTGAAAAGAAGAAGGTGCCACAGAG
TTGTGGGCTTTGAAAAGAAGAAGGTGCCATGGAGCTGTGGGCTTTAAGAAGAAGGTGCCACGGAG
TCGTGGGCTTTAAAGAGTGCCACGGAGTCGTGGGCTTTAAAACAGAAAAAGAGTGCCACGGAGTT
GTGGGCTTTAAACAGAAAAAGGTGCCACAGAGTTGTGGGCTTTGAAAAGGAAAAAGAGTGCCACA
GAGTTGTGGGCTTTAAAAAGAGGTGCCACGGAGTTGTGGACTTAAACG
Found at i:9178175 original size:27 final size:27
Alignment explanation
Indices: 9178143--9178196 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
9178133 GATGAAAAAA
9178143 GTGCCACGGAGTTATGGGCTTAAAAGG
1 GTGCCACGGAGTTATGGGCTTAAAAGG
* *
9178170 GTGCCACGGAGTTGTGGGCTTAGAAGG
1 GTGCCACGGAGTTATGGGCTTAAAAGG
9178197 AAAAAGAGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.22, C:0.15, G:0.41, T:0.22
Consensus pattern (27 bp):
GTGCCACGGAGTTATGGGCTTAAAAGG
Found at i:9178209 original size:489 final size:483
Alignment explanation
Indices: 9177281--9178230 Score: 1510
Period size: 489 Copynumber: 1.9 Consensus size: 483
9177271 TTATGGGCTT
* *
9177281 AAAAGGGTGCCACGGAGTTGTGGGCTTAGAAGGAAAAAGAGTGCCACAGAGTTGTGGGTTTAGAA
1 AAAAGAGTGCCACAGAGTTGTGGGCTTAGAAGGAAAAAGAGTGCCACAGAGTTGTGGGTTT---A
* * *
9177346 GGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAGTGCCACGGAGTCGTGGCCTTTGAAAA
63 --AAAAAGAGTGCCACGGAGTCGTGGCCTTTAAAAAGAGTGCCACAGAGTCGTGGCCTTTGAAAA
* * *
9177411 GAAGAAGGTGCCACAGAGTTGTGGGCTTTGAAAAGAAGAAGGTGCCATGGAGCTGTGGGCTTTAA
126 GAAGAAGGTGCCACAGAGCTGTGGGCTTTAAAAAGAAGAAGGTGCCACGGAGCTGTGGGCTTTAA
9177476 AGAGTGCCACGGAGTCGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA
191 AGAGTGCCACGGAGTCGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA
9177541 CAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGC
256 CAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGC
* * *
9177606 TTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGG
321 TTTAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTTAAAAAGAAAAAAGTGCCACGGAGTTATGG
* *
9177671 GCTTAAACGGGTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAGTTATGGGCTT
386 GCTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAGA-GAAAAAAGTGCCACAGAGTTATGGGCTT
9177736 AAAAGGGTGCCACGGAGTTGTGGGCTTAGAAGGA
450 AAAAGGGTGCCACGGAGTTGTGGGCTTAGAAGGA
* *
9177770 AAAAGAGTGCCACAGAGTTGTGGGTTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AA
1 AAAAGAGTGCCACAGAGTTGTGGGCTTAGAAGGAAAAAGAGTGCCACAGAGTTGTGGG-TTTAAA
* *
9177834 AAAGAGTGCCACGGAGTCGTGGCCTTTGAAAAGAAGAAGGTGCCACAGAGTTGTGGGCTTTGAAA
65 AAAGAGTGCCACGGAGTCGTGGCCTTT--AAA-AAG-A-GTGCCACAGAGTCGTGGCCTTTGAAA
** *
9177899 AGAAGAAGGTGCCATGGAGCTGTGGGCTTTAAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTTA
125 AGAAGAAGGTGCCACAGAGCTGTGGGCTTTAAAAAGAAGAAGGTGCCACGGAGCTGTGGGCTTTA
9177964 AAGAGTGCCACGGAGTCGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
190 AAGAGTGCCACGGAGTCGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
9178029 ACAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGG
255 ACAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGG
* *
9178094 CTTTAAAAGAAAAAGGTGCCATGGAGTTGTGGAC-TTAAAGATGAAAAAAGTGCCACGGAGTTAT
320 CTTTAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTTAAA-AAGAAAAAAGTGCCACGGAGTTAT
* *
9178158 GGGCTTAAAAGGGTGCCACGGAGTTGTGGGCTTAGAAG-GAAAAAGAGTGCCACAGAGTTGTGGG
384 GGGCTTAAAAGGGTGCCACGGAGTTGTGGACTTA-AAGAGAAAAA-AGTGCCACAGAGTTATGGG
* *
9178222 TTTAGAAGG
447 CTTAAAAGG
9178231 AAAAAGAGTG
Statistics
Matches: 426, Mismatches: 26, Indels: 18
0.91 0.06 0.04
Matches are distributed among these distances:
484 27 0.06
486 3 0.01
487 3 0.01
488 12 0.03
489 375 0.88
490 6 0.01
ACGTcount: A:0.32, C:0.13, G:0.35, T:0.20
Consensus pattern (483 bp):
AAAAGAGTGCCACAGAGTTGTGGGCTTAGAAGGAAAAAGAGTGCCACAGAGTTGTGGGTTTAAAA
AAGAGTGCCACGGAGTCGTGGCCTTTAAAAAGAGTGCCACAGAGTCGTGGCCTTTGAAAAGAAGA
AGGTGCCACAGAGCTGTGGGCTTTAAAAAGAAGAAGGTGCCACGGAGCTGTGGGCTTTAAAGAGT
GCCACGGAGTCGTGGGCTTTGAAAAGAGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACAGAA
AAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAA
AAGAAAAAGGTGCCACGGAGTTGTGGACTTTAAAAAGAAAAAAGTGCCACGGAGTTATGGGCTTA
AAAGGGTGCCACGGAGTTGTGGACTTAAAGAGAAAAAAGTGCCACAGAGTTATGGGCTTAAAAGG
GTGCCACGGAGTTGTGGGCTTAGAAGGA
Found at i:9179321 original size:15 final size:15
Alignment explanation
Indices: 9179301--9179331 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
9179291 TAAAAATGTC
*
9179301 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
9179316 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
9179331 C
1 C
9179332 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:9181415 original size:20 final size:20
Alignment explanation
Indices: 9181336--9181415 Score: 79
Period size: 20 Copynumber: 3.8 Consensus size: 20
9181326 AATGTCCAAA
*
9181336 ATGTATCGATACATGTTTCT
1 ATGTATCGATACATTTTTCT
* *
9181356 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACAT-T----TTTCT
9181381 ATGTATCGATACATTTTTCT
1 ATGTATCGATACATTTTTCT
*
9181401 TTGTATCGATACATT
1 ATGTATCGATACATT
9181416 GTATCGATAC
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
20 31 0.63
24 1 0.02
25 17 0.35
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCT
Found at i:9181419 original size:13 final size:13
Alignment explanation
Indices: 9181401--9181439 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
9181391 ACATTTTTCT
9181401 TTGTATCGATACA
1 TTGTATCGATACA
9181414 TTGTATCGATACA
1 TTGTATCGATACA
*
9181427 CTGTATCGATACA
1 TTGTATCGATACA
9181440 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:9183999 original size:13 final size:13
Alignment explanation
Indices: 9183981--9184006 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
9183971 TACAGCAAGT
9183981 ATGTATCGATACA
1 ATGTATCGATACA
9183994 ATGTATCGATACA
1 ATGTATCGATACA
9184007 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:9185767 original size:71 final size:72
Alignment explanation
Indices: 9185661--9185798 Score: 192
Period size: 71 Copynumber: 1.9 Consensus size: 72
9185651 AACATGACCT
* *
9185661 TAAAGGACTTCGGTTTGACATAAAAAATACTAAAATGATCC-TAAAGGTTTAGTTTTAACATGAA
1 TAAAAGACTTCGGTTTGACATAAAAAATACTAAAATGA-CCTTAAAGGTTCAGTTTTAACATGAA
9185725 AGTGATCA
65 AGTGATCA
* * *
9185733 TAAAAGACTT-GGTTTTGACAT-AAAAATGCTAAAATGACCTTAAAGGTTCAGTTTTGATATGAA
1 TAAAAGACTTCGG-TTTGACATAAAAAATACTAAAATGACCTTAAAGGTTCAGTTTTAACATGAA
9185796 AGT
65 AGT
9185799 TCTAACACAA
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
70 2 0.03
71 40 0.68
72 17 0.29
ACGTcount: A:0.41, C:0.10, G:0.17, T:0.32
Consensus pattern (72 bp):
TAAAAGACTTCGGTTTGACATAAAAAATACTAAAATGACCTTAAAGGTTCAGTTTTAACATGAAA
GTGATCA
Found at i:9187012 original size:58 final size:58
Alignment explanation
Indices: 9186852--9187384 Score: 287
Period size: 58 Copynumber: 9.1 Consensus size: 58
9186842 GTCTTTTAGC
* * * ** * * *
9186852 ATTTTCCATGCATTTTAAGACTATTTCGGTTATTTTACATAATTTAAGAGCATTTTAGAA
1 ATTTT-CATGCATTTTAGGGCCATTAAGGTTATTTTACATAATCT-AGGGCATTTTAAAA
* * ** * * *
9186912 ATATTCTTGCATTGCAGGTCTATTTAGGTTATTTTACATAATCTAGCGGCATTTTAAAA
1 ATTTTCATGCATTTTAGGGCCATTAAGGTTATTTTACATAATCTAG-GGCATTTTAAAA
* * * *
9186971 ATTTTTAAGCATTTTA-GGCCATTAAGGTTATTTTACATAATCTAAGGCA-TTTAGAA
1 ATTTTCATGCATTTTAGGGCCATTAAGGTTATTTTACATAATCTAGGGCATTTTAAAA
* * * * * * *
9187027 GTGTCCATGCATTTTAGGGACATTTAGGTTATTTTACATAATCCAGGGTCATTTTAGTAA
1 ATTTTCATGCATTTTAGGGCCATTAAGGTTATTTTACATAATCTAGGG-CATTTTA-AAA
* * * ** * * *
9187087 ATTTT-AT-CATTTTAGGGTCTTTTAGGTTATTTTACGCAATTTAAGGGCATTATAGAA
1 ATTTTCATGCATTTTAGGGCCATTAAGGTTATTTTACATAATCT-AGGGCATTTTAAAA
* * ** * *
9187144 ATTTTCATTCGTTTTTCGGTCA-TATGGTTATTTTACATAATCTAGGGCCATTTTACAAA
1 ATTTTCATGCATTTTAGGGCCATTAAGGTTATTTTACATAATCTAGGG-CATTTTA-AAA
* * * * * * *
9187203 ATTTTCATGAATTTCATGGCCA-TATAGGTTATTTTATATACTCTAGGGTCACTTTAGCAA
1 ATTTTCATGCATTTTAGGGCCATTA-AGGTTATTTTACATAATCTAGGG-CATTTTA-AAA
* * * * * ** * *
9187263 A-TTTCAT-TATTTTAGAGCCATTTAGGTTAGTTTATATAATCTGAGATCATCTTAGTAA
1 ATTTTCATGCATTTTAGGGCCATTAAGGTTATTTTACATAATCT-AGGGCATTTTA-AAA
* ** * * ** *
9187321 A-TTCCAT-CATTTTAGGGTTATT-AGGTTATTTCATATAATCTAAGTTCATTTTAAAC
1 ATTTTCATGCATTTTAGGGCCATTAAGGTTATTTTACATAATCT-AGGGCATTTTAAAA
9187377 ATTTTCAT
1 ATTTTCAT
9187385 CTTTTTAAGA
Statistics
Matches: 367, Mismatches: 92, Indels: 31
0.75 0.19 0.06
Matches are distributed among these distances:
56 19 0.05
57 73 0.20
58 139 0.38
59 99 0.27
60 37 0.10
ACGTcount: A:0.29, C:0.12, G:0.14, T:0.44
Consensus pattern (58 bp):
ATTTTCATGCATTTTAGGGCCATTAAGGTTATTTTACATAATCTAGGGCATTTTAAAA
Found at i:9187052 original size:115 final size:117
Alignment explanation
Indices: 9186879--9187304 Score: 343
Period size: 115 Copynumber: 3.6 Consensus size: 117
9186869 AGACTATTTC
* * * **
9186879 GGTTATTTTACATAATTTAAGAGCATTTTAGAAATATTCTTGCATTGCA-GGTCTATTTAGGTTA
1 GGTTATTTTACATAATCTAAG-GCACTTTAGAAAT-TTCATGCATTTTAGGGTC-ATTTAGGTTA
9186943 TTTTACATAATCTAGCGG-CATTTTA-AAAATTTTTAAGCATTTTA-GGCCATTAA
63 TTTTACATAATCTAG-GGCCATTTTACAAAATTTTTAAGCATTTTAGGGCCATTAA
* * *
9186996 GGTTATTTTACATAATCTAAGGCA-TTTAGAAGTGTCCATGCATTTTAGGGACATTTAGGTTATT
1 GGTTATTTTACATAATCTAAGGCACTTTAGAAAT-TTCATGCATTTTAGGGTCATTTAGGTTATT
* * ** * * * *
9187060 TTACATAATCCAGGGTCATTTTAGTAAA-TTTT-ATCATTTTAGGGTCTTTTA
65 TTACATAATCTAGGGCCATTTTACAAAATTTTTAAGCATTTTAGGGCCATTAA
** * * * ** *
9187111 GGTTATTTTACGCAATTTAAGGGCA-TTATAGAAATTTTCATTCGTTTTTCGGTCATAT-GGTTA
1 GGTTATTTTACATAATCTAA-GGCACTT-TAGAAA-TTTCATGCATTTTAGGGTCATTTAGGTTA
* * * * *
9187174 TTTTACATAATCTAGGGCCATTTTACAAAATTTTCATGAATTTCATGGCCA-TATA
63 TTTTACATAATCTAGGGCCATTTTACAAAATTTTTAAGCATTTTAGGGCCATTA-A
* * * * * * *
9187229 GGTTATTTTATATACTCTAGGGTCACTTTAGCAAATTTCAT-TATTTTAGAGCCATTTAGGTTAG
1 GGTTATTTTACATAATCTAAGG-CACTTTAG-AAATTTCATGCATTTTAGGGTCATTTAGGTTAT
*
9187293 TTTATATAATCT
64 TTTACATAATCT
9187305 GAGATCATCT
Statistics
Matches: 242, Mismatches: 53, Indels: 27
0.75 0.16 0.08
Matches are distributed among these distances:
114 10 0.04
115 75 0.31
116 46 0.19
117 55 0.23
118 51 0.21
119 5 0.02
ACGTcount: A:0.29, C:0.12, G:0.15, T:0.43
Consensus pattern (117 bp):
GGTTATTTTACATAATCTAAGGCACTTTAGAAATTTCATGCATTTTAGGGTCATTTAGGTTATTT
TACATAATCTAGGGCCATTTTACAAAATTTTTAAGCATTTTAGGGCCATTAA
Found at i:9187129 original size:29 final size:29
Alignment explanation
Indices: 9187039--9187129 Score: 69
Period size: 29 Copynumber: 3.1 Consensus size: 29
9187029 GTCCATGCAT
* * *
9187039 TTTAGGGACATTTAGGTTATTTTACATAA
1 TTTAGGGTCTTTTAGGTTATTTTACACAA
** * * *
9187068 TCCAGGGTCATTTTA-GTAAATTTTA-TCAT
1 TTTAGGGTC-TTTTAGGT-TATTTTACACAA
*
9187097 TTTAGGGTCTTTTAGGTTATTTTACGCAA
1 TTTAGGGTCTTTTAGGTTATTTTACACAA
9187126 TTTA
1 TTTA
9187130 AGGGCATTAT
Statistics
Matches: 45, Mismatches: 13, Indels: 8
0.68 0.20 0.12
Matches are distributed among these distances:
28 11 0.24
29 24 0.53
30 10 0.22
ACGTcount: A:0.26, C:0.10, G:0.16, T:0.47
Consensus pattern (29 bp):
TTTAGGGTCTTTTAGGTTATTTTACACAA
Found at i:9187248 original size:60 final size:58
Alignment explanation
Indices: 9187164--9187304 Score: 153
Period size: 60 Copynumber: 2.4 Consensus size: 58
9187154 GTTTTTCGGT
* *
9187164 CATAT-GGTTATTTTACATAATCTAGGGCCATTTTA-CAAAATTTTCATGAATTTCATG-GC
1 CATATAGGTTATTTTATATAATCTAGGGCCACTTTAGC-AAA-TTTCAT-AATTTCA-GAGC
* * * *
9187223 CATATAGGTTATTTTATATACTCTAGGGTCACTTTAGCAAATTTCATTATTTTAGAGC
1 CATATAGGTTATTTTATATAATCTAGGGCCACTTTAGCAAATTTCATAATTTCAGAGC
* *
9187281 CATTTAGGTTAGTTTATATAATCT
1 CATATAGGTTATTTTATATAATCT
9187305 GAGATCATCT
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
57 1 0.01
58 28 0.40
59 11 0.16
60 29 0.41
61 1 0.01
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.43
Consensus pattern (58 bp):
CATATAGGTTATTTTATATAATCTAGGGCCACTTTAGCAAATTTCATAATTTCAGAGC
Found at i:9191742 original size:18 final size:19
Alignment explanation
Indices: 9191719--9191758 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
9191709 TGAGAACTTG
*
9191719 TAAAAATGGCAC-AAAGCT
1 TAAAAATGCCACAAAAGCT
9191737 TAAAAATGCCACAAAAGCT
1 TAAAAATGCCACAAAAGCT
9191756 TAA
1 TAA
9191759 TCAGTTAGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.53, C:0.17, G:0.12, T:0.17
Consensus pattern (19 bp):
TAAAAATGCCACAAAAGCT
Found at i:9197886 original size:30 final size:29
Alignment explanation
Indices: 9197850--9197946 Score: 95
Period size: 30 Copynumber: 3.6 Consensus size: 29
9197840 GATTCATTGA
9197850 AAAATGTATCGATACATCTAGGTAAAAAAC
1 AAAATGTATCGATACATCT-GGTAAAAAAC
*
9197880 AAAATGTATTGATACA-CT-G------A-
1 AAAATGTATCGATACATCTGGTAAAAAAC
9197900 AAAATGTATCGATACATCTGGGTAAAAAAC
1 AAAATGTATCGATACATCT-GGTAAAAAAC
*
9197930 AGAATGTATCGATACAT
1 AAAATGTATCGATACAT
9197947 GTACTATTCA
Statistics
Matches: 54, Mismatches: 3, Indels: 20
0.70 0.04 0.26
Matches are distributed among these distances:
20 15 0.28
21 3 0.06
23 1 0.02
27 1 0.02
29 3 0.06
30 31 0.57
ACGTcount: A:0.46, C:0.12, G:0.15, T:0.26
Consensus pattern (29 bp):
AAAATGTATCGATACATCTGGTAAAAAAC
Found at i:9197901 original size:50 final size:50
Alignment explanation
Indices: 9197833--9197945 Score: 181
Period size: 50 Copynumber: 2.3 Consensus size: 50
9197823 AATTAACTAG
* *
9197833 ATGTATCGATTCATTGAAAAATGTATCGATACATCTAGGTAAAAAACAAA
1 ATGTATCGATACACTGAAAAATGTATCGATACATCTAGGTAAAAAACAAA
* * *
9197883 ATGTATTGATACACTGAAAAATGTATCGATACATCTGGGTAAAAAACAGA
1 ATGTATCGATACACTGAAAAATGTATCGATACATCTAGGTAAAAAACAAA
9197933 ATGTATCGATACA
1 ATGTATCGATACA
9197946 TGTACTATTC
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 57 1.00
ACGTcount: A:0.44, C:0.12, G:0.16, T:0.27
Consensus pattern (50 bp):
ATGTATCGATACACTGAAAAATGTATCGATACATCTAGGTAAAAAACAAA
Found at i:9198714 original size:61 final size:61
Alignment explanation
Indices: 9198649--9198806 Score: 174
Period size: 61 Copynumber: 2.6 Consensus size: 61
9198639 GGGTAAGAAG
* * * * **
9198649 AGTGCCAATGTGCTGATTTAAGGTTAGCGACATTGGAATTAAGGATGCGAAGAATGATAAA
1 AGTGCCAATATGCTGATTCAAGGTCAGCGACATTGGAATTAAAGATGAAAAGAATGATAAA
* * *
9198710 AGTGCTAATATGCTGATTCAAGGTCAGCGATATTGGACTTAAAGATGAAAAGAATGATAAA
1 AGTGCCAATATGCTGATTCAAGGTCAGCGACATTGGAATTAAAGATGAAAAGAATGATAAA
* * * * *
9198771 GGTGCCGATATACTAATTCAAGG-CTAGCGACTTTGG
1 AGTGCCAATATGCTGATTCAAGGTC-AGCGACATTGG
9198807 GCTTAGAAGA
Statistics
Matches: 80, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
60 1 0.01
61 79 0.99
ACGTcount: A:0.35, C:0.12, G:0.26, T:0.27
Consensus pattern (61 bp):
AGTGCCAATATGCTGATTCAAGGTCAGCGACATTGGAATTAAAGATGAAAAGAATGATAAA
Found at i:9198905 original size:32 final size:32
Alignment explanation
Indices: 9198804--9199037 Score: 165
Period size: 32 Copynumber: 7.3 Consensus size: 32
9198794 CTAGCGACTT
*
9198804 TGGGC-TTAGA-AGAAGATGCCACCAACTTGTG
1 TGGGCTTTAGAGA-AAGGTGCCACCAACTTGTG
* *
9198835 TGGGCTTTAGAGAAGAGGTTGCCACCAGCTTGTA
1 TGGGCTTTAGAGAA-AGG-TGCCACCAACTTGTG
*
9198869 TGGGCTTTAGAGAAAGGTGCCACCAATTTGTG
1 TGGGCTTTAGAGAAAGGTGCCACCAACTTGTG
* * *
9198901 TGGGCTTGAGA-AAAGGTTGTCACCAGCTTGTG
1 TGGGCTTTAGAGAAAGG-TGCCACCAACTTGTG
* * ** * * * * *
9198933 TAGGCTTTAGTG-GGGGTGTCACCGATTTTTA
1 TGGGCTTTAGAGAAAGGTGCCACCAACTTGTG
** * *
9198964 TAAGCTTTAGA-AGAGGTTGCCACCAACTTGTT
1 TGGGCTTTAGAGAAAGG-TGCCACCAACTTGTG
* * *
9198996 TGGGCTTTAGAG-GAGTTGCCACCGACTTGTG
1 TGGGCTTTAGAGAAAGGTGCCACCAACTTGTG
*
9199027 TTGGCTTTAGA
1 TGGGCTTTAGA
9199038 AAGGGATGCT
Statistics
Matches: 160, Mismatches: 34, Indels: 18
0.75 0.16 0.08
Matches are distributed among these distances:
31 55 0.34
32 72 0.45
33 6 0.04
34 27 0.17
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.30
Consensus pattern (32 bp):
TGGGCTTTAGAGAAAGGTGCCACCAACTTGTG
Found at i:9199055 original size:63 final size:64
Alignment explanation
Indices: 9198802--9199086 Score: 226
Period size: 63 Copynumber: 4.5 Consensus size: 64
9198792 GGCTAGCGAC
* * * *
9198802 TTTGGGC-TTAGAAGAAGATGCCACCAACTTGTGTGGGCTTTAGAGAAGAGGTTGCCACCAGCTT
1 TTTGGGCTTTAG-AGGAGGTGCCACCGACTTGTGTGGGCTTTAGA-AAGAGGTTGCCACCAACTT
9198866 G
64 G
* * * * * * *
9198867 TATGGGCTTTAGAGAAAGGTGCCACCAATTTGTGTGGGCTTGAGAAA-AGGTTGTCACCAGCTTG
1 TTTGGGCTTTAGAG-GAGGTGCCACCGACTTGTGTGGGCTTTAGAAAGAGGTTGCCACCAACTTG
* * * * * * * * **
9198931 TGTAGGCTTTAGTGGGGGTGTCACCGATTTTTATAAGCTTTAG-AAGAGGTTGCCACCAACTTG
1 TTTGGGCTTTAGAGGAGGTGCCACCGACTTGTGTGGGCTTTAGAAAGAGGTTGCCACCAACTTG
* * * * *
9198994 TTTGGGCTTTAGAGGAGTTGCCACCGACTTGTGTTGGCTTTAGAAAG-GGATGCTACTAACTTG
1 TTTGGGCTTTAGAGGAGGTGCCACCGACTTGTGTGGGCTTTAGAAAGAGGTTGCCACCAACTTG
* *
9199057 --TGGGCTTTA-A-AAGGATGCCACTGACTTGTG
1 TTTGGGCTTTAGAGGAGG-TGCCACCGACTTGTG
9199087 AACTTTGAAA
Statistics
Matches: 179, Mismatches: 36, Indels: 15
0.78 0.16 0.07
Matches are distributed among these distances:
59 2 0.01
60 15 0.08
61 9 0.05
62 2 0.01
63 80 0.45
64 30 0.17
65 10 0.06
66 31 0.17
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.30
Consensus pattern (64 bp):
TTTGGGCTTTAGAGGAGGTGCCACCGACTTGTGTGGGCTTTAGAAAGAGGTTGCCACCAACTTG
Found at i:9199183 original size:31 final size:31
Alignment explanation
Indices: 9199135--9199213 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
9199125 GGTGCCATTG
9199135 ACTCATGGGCTTTGAAAAAAAGATACCACTA
1 ACTCATGGGCTTTGAAAAAAAGATACCACTA
* * * *
9199166 ACTCGTGGGATTTGAAAAAAAGATGCCACTG
1 ACTCATGGGCTTTGAAAAAAAGATACCACTA
*
9199197 ACTTATGGGCTTTGAAA
1 ACTCATGGGCTTTGAAA
9199214 GGGTGCCACT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (31 bp):
ACTCATGGGCTTTGAAAAAAAGATACCACTA
Found at i:9199309 original size:145 final size:144
Alignment explanation
Indices: 9199042--9199445 Score: 429
Period size: 145 Copynumber: 2.8 Consensus size: 144
9199032 TTTAGAAAGG
* * * * **
9199042 GATGCTACTAACTTGTGGGCTTTAAAAGGATGCCACTGACTTGTGAACTTTGAAAGGATGCCACT
1 GATGCCACTGACTTGTGGGCTTT-AAAGGGTGCCACTGATTTGTGGGCTTTGAAAGGATGCCACT
* * * **
9199107 GACTTGTGGGCTTCG-AAAG-GTGCCATTGACTCATGGGCTTTGAAAAAAAGATACCACTAACTC
65 GACTTGTGGGCTTTGAAAAGAATGCCACTGACTTGTGGGCTTTG-AAAAAAGATACCACTAACTC
9199170 GTGGGATTTGAAAAAAA
129 GTGGGATTTG-AAAAAA
* * * *
9199187 GATGCCACTGACTTATGGGCTTTGAAAGGGTGCCACTGATTTGTGGGCTTTAAAATGAAGCCACT
1 GATGCCACTGACTTGTGGGCTTT-AAAGGGTGCCACTGATTTGTGGGCTTTGAAAGGATGCCACT
* * * *
9199252 GACTTGTGGGCTTTGAAAAGAATGCCACTGACTTGTGGGCTTTGAAAAGA-ATGCCACTGACTTG
65 GACTTGTGGGCTTTGAAAAGAATGCCACTGACTTGTGGGCTTTGAAAAAAGATACCACTAACTCG
* *
9199316 TGGGCTTTGAAAAGA
130 TGGGATTTGAAAAAA
* * * *
9199331 -ATGCCACTGACTTGTGGGCTTTTAAGGGTGCCACTAACTTTGTGGGCTTTGCAAGGGTGCCACT
1 GATGCCACTGACTTGTGGGCTTTAAAGGGTGCCACTGA-TTTGTGGGCTTTGAAAGGATGCCACT
* * * **
9199395 GACTCGTAGGCTTTGATAAAAAGATGCCACCAACTTATGTGGGCTTTGAAA
65 GACTTGTGGGCTTTGA-AAAGA-ATGCCACTGAC-T-TGTGGGCTTTGAAA
9199446 GAGGTTGCCA
Statistics
Matches: 217, Mismatches: 35, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
142 13 0.06
143 56 0.26
144 9 0.04
145 96 0.44
146 10 0.05
147 33 0.15
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (144 bp):
GATGCCACTGACTTGTGGGCTTTAAAGGGTGCCACTGATTTGTGGGCTTTGAAAGGATGCCACTG
ACTTGTGGGCTTTGAAAAGAATGCCACTGACTTGTGGGCTTTGAAAAAAGATACCACTAACTCGT
GGGATTTGAAAAAA
Found at i:9199441 original size:33 final size:32
Alignment explanation
Indices: 9199403--9199468 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 32
9199393 CTGACTCGTA
9199403 GGCTTTGATAAAAAGATGCCACCAACTTATGTG
1 GGCTTTGA-AAAAAGATGCCACCAACTTATGTG
* * * *
9199436 GGCTTTGAAAGAGGTTGCCACCAACTTGTGTG
1 GGCTTTGAAAAAAGATGCCACCAACTTATGTG
9199468 G
1 G
9199469 AATTTAGAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
32 21 0.72
33 8 0.28
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (32 bp):
GGCTTTGAAAAAAGATGCCACCAACTTATGTG
Found at i:9199458 original size:32 final size:30
Alignment explanation
Indices: 9199012--9199534 Score: 372
Period size: 28 Copynumber: 17.7 Consensus size: 30
9199002 TTAGAGGAGT
*
9199012 TGCCACCGACTTGTGTTGGCTTTAGAAAG-GGA
1 TGCCACTGACTTGTG--GGCTTT-GAAAGAGGA
* *
9199044 TGCTACTAACTTGTGGGCTTT-AAA-AGGA
1 TGCCACTGACTTGTGGGCTTTGAAAGAGGA
**
9199072 TGCCACTGACTTGTGAACTTTG-AA-AGGA
1 TGCCACTGACTTGTGGGCTTTGAAAGAGGA
*
9199100 TGCCACTGACTTGTGGGCTTCG-AA-AGG-
1 TGCCACTGACTTGTGGGCTTTGAAAGAGGA
* ** * *
9199127 TGCCATTGACTCATGGGCTTTGAAAAAAAGA
1 TGCCACTGACTTGTGGGCTTTG-AAAGAGGA
* * * * * *
9199158 TACCACTAACTCGTGGGATTTGAAAAAAAGA
1 TGCCACTGACTTGTGGGCTTTG-AAAGAGGA
*
9199189 TGCCACTGACTTATGGGCTTTGAAAG-GG-
1 TGCCACTGACTTGTGGGCTTTGAAAGAGGA
* *
9199217 TGCCACTGATTTGTGGGCTTT-AAA-ATGA
1 TGCCACTGACTTGTGGGCTTTGAAAGAGGA
* *
9199245 AGCCACTGACTTGTGGGCTTTGAAA-AGAA
1 TGCCACTGACTTGTGGGCTTTGAAAGAGGA
*
9199274 TGCCACTGACTTGTGGGCTTTGAAA-AGAA
1 TGCCACTGACTTGTGGGCTTTGAAAGAGGA
*
9199303 TGCCACTGACTTGTGGGCTTTGAAA-AGAA
1 TGCCACTGACTTGTGGGCTTTGAAAGAGGA
*
9199332 TGCCACTGACTTGTGGGCTTT-TAAG-GG-
1 TGCCACTGACTTGTGGGCTTTGAAAGAGGA
* *
9199359 TGCCACTAACTTTGTGGGCTTTGCAAG-GG-
1 TGCCACTGAC-TTGTGGGCTTTGAAAGAGGA
* * * *
9199388 TGCCACTGACTCGTAGGCTTTGATAAAAAGA
1 TGCCACTGACTTGTGGGCTTTGA-AAGAGGA
** *
9199419 TGCCACCAACTTATGTGGGCTTTGAAAGAGGT
1 TGCCACTGAC-T-TGTGGGCTTTGAAAGAGGA
** * *
9199451 TGCCACCAACTTGTGTGGAATTTAGAAAG-GGT
1 TGCCACTGACTTGTG-GG-CTTT-GAAAGAGGA
* *
9199483 TGCCACCGACTTGTGTGGACTTTAAAAGA-G-
1 TGCCACTGACTTGTG-GG-CTTTGAAAGAGGA
* * *
9199513 TGCCATTGACTTATAGGCTTTG
1 TGCCACTGACTTGTGGGCTTTG
9199535 GAAGGAAGCC
Statistics
Matches: 409, Mismatches: 61, Indels: 46
0.79 0.12 0.09
Matches are distributed among these distances:
27 31 0.08
28 119 0.29
29 104 0.25
30 27 0.07
31 59 0.14
32 54 0.13
33 15 0.04
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (30 bp):
TGCCACTGACTTGTGGGCTTTGAAAGAGGA
Found at i:9199597 original size:32 final size:32
Alignment explanation
Indices: 9199534--9199755 Score: 185
Period size: 32 Copynumber: 6.8 Consensus size: 32
9199524 TATAGGCTTT
* *
9199534 GGAAGGAAGCCACGGAGTTATGGACTT-AAAAG
1 GGAAGGTA-CCACGGAGTTGTGGACTTAAAAAG
9199566 GGAAGGTACCACGGAGTTGTGGACTTAAAAAG
1 GGAAGGTACCACGGAGTTGTGGACTTAAAAAG
* * *
9199598 GGAAGGTGCCACGGAGTTGTGGACTTTAACAG
1 GGAAGGTACCACGGAGTTGTGGACTTAAAAAG
** * * * *
9199630 AAAAAGGTTTCTACAGAGTTATGGACTTAAAAAG
1 -GGAAGG-TACCACGGAGTTGTGGACTTAAAAAG
* * * * *
9199664 GAAAGGTGCCACGGAGTTGTGAACTTTAATAG
1 GGAAGGTACCACGGAGTTGTGGACTTAAAAAG
** * *
9199696 AAAAATGTTACCACGGAGTTATGGACTTAAAAAG
1 -GGAA-GGTACCACGGAGTTGTGGACTTAAAAAG
** *
9199730 GGAAGGTGTCACAGAGTTGTGGACTT
1 GGAAGGTACCACGGAGTTGTGGACTT
9199756 TAATAAAAAA
Statistics
Matches: 150, Mismatches: 35, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
31 17 0.11
32 77 0.51
33 14 0.09
34 42 0.28
ACGTcount: A:0.35, C:0.12, G:0.31, T:0.23
Consensus pattern (32 bp):
GGAAGGTACCACGGAGTTGTGGACTTAAAAAG
Found at i:9199655 original size:34 final size:34
Alignment explanation
Indices: 9199543--9199833 Score: 183
Period size: 34 Copynumber: 8.8 Consensus size: 34
9199533 TGGAAGGAAG
* * **
9199543 CCACGGAGTTATGGAC-TTAAAAG-GGAAGG-TA
1 CCACAGAGTTGTGGACTTTAAAAGAAAAAGGTTA
* * ** *
9199574 CCACGGAGTTGTGGACTTAAAAAG-GGAAGG-TG
1 CCACAGAGTTGTGGACTTTAAAAGAAAAAGGTTA
* * *
9199606 CCACGGAGTTGTGGACTTTAACAGAAAAAGGTTT
1 CCACAGAGTTGTGGACTTTAAAAGAAAAAGGTTA
* * * * *
9199640 CTACAGAGTTATGGACTTAAAAAG-GAAAGG-TG
1 CCACAGAGTTGTGGACTTTAAAAGAAAAAGGTTA
* * * *
9199672 CCACGGAGTTGTGAACTTTAATAGAAAAATGTTA
1 CCACAGAGTTGTGGACTTTAAAAGAAAAAGGTTA
* * * **
9199706 CCACGGAGTTATGGACTTAAAAAG-GGAAGGTGT-
1 CCACAGAGTTGTGGACTTTAAAAGAAAAAGGT-TA
*
9199739 -CACAGAGTTGTGGACTTTAATAA-AAAAAGGTTG
1 CCACAGAGTTGTGGACTTTAA-AAGAAAAAGGTTA
* * *
9199772 CCAC-GAAATTGTGGATTTTAACAGAAAAAGGTTA
1 CCACAG-AGTTGTGGACTTTAAAAGAAAAAGGTTA
*
9199806 CCACAGAGTTGTGGACTTAGAAAAGAAA
1 CCACAGAGTTGTGGACTT-TAAAAGAAA
9199834 TGCCACTGAA
Statistics
Matches: 202, Mismatches: 44, Indels: 24
0.75 0.16 0.09
Matches are distributed among these distances:
31 15 0.07
32 72 0.36
33 26 0.13
34 81 0.40
35 8 0.04
ACGTcount: A:0.37, C:0.12, G:0.27, T:0.23
Consensus pattern (34 bp):
CCACAGAGTTGTGGACTTTAAAAGAAAAAGGTTA
Found at i:9199776 original size:66 final size:66
Alignment explanation
Indices: 9199542--9199776 Score: 305
Period size: 66 Copynumber: 3.6 Consensus size: 66
9199532 TTGGAAGGAA
* * ** *
9199542 GCCACGGAGTTATGGAC-TTAAAAG-GGAAGG-TACCACGGAGTTGTGGACTTAAAAAGGGAAGG
1 GCCACGGAGTTGTGGACTTTAATAGAAAAAGGTTACCACGGAGTTATGGACTTAAAAAGGGAAGG
9199604 T
66 T
* * * * *
9199605 GCCACGGAGTTGTGGACTTTAACAGAAAAAGGTTTCTACAGAGTTATGGACTTAAAAAGGAAAGG
1 GCCACGGAGTTGTGGACTTTAATAGAAAAAGGTTACCACGGAGTTATGGACTTAAAAAGGGAAGG
9199670 T
66 T
* *
9199671 GCCACGGAGTTGTGAACTTTAATAGAAAAATGTTACCACGGAGTTATGGACTTAAAAAGGGAAGG
1 GCCACGGAGTTGTGGACTTTAATAGAAAAAGGTTACCACGGAGTTATGGACTTAAAAAGGGAAGG
9199736 T
66 T
* * * *
9199737 GTCACAGAGTTGTGGACTTTAATAAAAAAAGGTTGCCACG
1 GCCACGGAGTTGTGGACTTTAATAGAAAAAGGTTACCACG
9199777 AAATTGTGGA
Statistics
Matches: 147, Mismatches: 22, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
63 16 0.11
64 6 0.04
65 4 0.03
66 121 0.82
ACGTcount: A:0.35, C:0.13, G:0.29, T:0.23
Consensus pattern (66 bp):
GCCACGGAGTTGTGGACTTTAATAGAAAAAGGTTACCACGGAGTTATGGACTTAAAAAGGGAAGG
T
Found at i:9199784 original size:100 final size:100
Alignment explanation
Indices: 9199606--9199833 Score: 264
Period size: 100 Copynumber: 2.3 Consensus size: 100
9199596 AGGGAAGGTG
* * * *
9199606 CCACGGAGTTGTGGACTTTAACAGAAAAAGGTTTCTACAGAGTTATGGACTTAAAAAGGAAAGGT
1 CCACGGAGTTGTGGACTTAAAAAGAAAAAGGTGTCTACAGAGTTATGGACTTAAAAAGAAAAGGT
* * * *
9199671 GCCACGGAGTTGTGAACTTTAATAGAAAAATGTTA
66 GCCACGAAATTGTGAACTTTAACAGAAAAAGGTTA
* ** *
9199706 CCACGGAGTTATGGACTTAAAAAG-GGAAGGTGTC-ACAGAGTTGTGGACTTTAATAAA-AAAAG
1 CCACGGAGTTGTGGACTTAAAAAGAAAAAGGTGTCTACAGAGTTATGGAC-TTAA-AAAGAAAAG
* *
9199768 GTTGCCACGAAATTGTGGATTTTAACAGAAAAAGGTTA
64 G-TGCCACGAAATTGTGAACTTTAACAGAAAAAGGTTA
*
9199806 CCACAGAGTTGTGGACTTAGAAAAGAAA
1 CCACGGAGTTGTGGACTTA-AAAAGAAA
9199834 TGCCACTGAA
Statistics
Matches: 105, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
98 13 0.12
99 16 0.15
100 71 0.68
101 5 0.05
ACGTcount: A:0.38, C:0.12, G:0.25, T:0.25
Consensus pattern (100 bp):
CCACGGAGTTGTGGACTTAAAAAGAAAAAGGTGTCTACAGAGTTATGGACTTAAAAAGAAAAGGT
GCCACGAAATTGTGAACTTTAACAGAAAAAGGTTA
Found at i:9205945 original size:51 final size:51
Alignment explanation
Indices: 9205821--9205929 Score: 166
Period size: 51 Copynumber: 2.2 Consensus size: 51
9205811 CTAAATATAG
* *
9205821 CGATACATTGAAAAATATATCGATACATCTGGGTAAAAAAATAAAATGTAT
1 CGATACATTGAAAAATATATCGATAAATCTGAGTAAAAAAATAAAATGTAT
* * *
9205872 CGATACATTGAAAAATGTATCGATAAATGTGAGT-AAAAAATAGAATGTAT
1 CGATACATTGAAAAATATATCGATAAATCTGAGTAAAAAAATAAAATGTAT
9205922 CGATACAT
1 CGATACAT
9205930 GTACTATTTA
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
50 23 0.43
51 30 0.57
ACGTcount: A:0.48, C:0.09, G:0.16, T:0.28
Consensus pattern (51 bp):
CGATACATTGAAAAATATATCGATAAATCTGAGTAAAAAAATAAAATGTAT
Found at i:9207173 original size:56 final size:56
Alignment explanation
Indices: 9207111--9207249 Score: 163
Period size: 56 Copynumber: 2.5 Consensus size: 56
9207101 CTTAAATTAA
* * * * *
9207111 AATTGGCACCCAAATAAGAAAGCCCAAAAGTAGTTAGTAGGTTTAGCTCTAGCTC-
1 AATTGGCACCCAAATAAGAAAACCCAAAAATAGCTAGTAGGTATAGCTCCAGCTCG
* *
9207166 AAGTTGGCATCCGAATAAGAAAACCCAAAAATAGCTAGTAGGTATAGCTCCAGCTCG
1 AA-TTGGCACCCAAATAAGAAAACCCAAAAATAGCTAGTAGGTATAGCTCCAGCTCG
* * * *
9207223 AATTGGCACTCGAATTAGAAAAACCAA
1 AATTGGCACCCAAATAAGAAAACCCAA
9207250 GAGTAACTAA
Statistics
Matches: 71, Mismatches: 11, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
55 2 0.03
56 67 0.94
57 2 0.03
ACGTcount: A:0.40, C:0.20, G:0.19, T:0.21
Consensus pattern (56 bp):
AATTGGCACCCAAATAAGAAAACCCAAAAATAGCTAGTAGGTATAGCTCCAGCTCG
Found at i:9207299 original size:56 final size:54
Alignment explanation
Indices: 9207079--9207405 Score: 147
Period size: 56 Copynumber: 5.9 Consensus size: 54
9207069 ATGAAAAAGC
* * **
9207079 CCAA-AGTAACTAATAGGTTTAGCT-TAAATTAAAATTGGCACCCAAATAAGAAAGC
1 CCAAGAGTAGCTAATAAGTTTAGCTCT-AATTAAAATTGGCACCC-AA-AAGAAAAA
* * * * ** * * * *
9207134 CCAAAAGTAGTTAGTAGGTTTAGCTCTAGCTCAAGTTGGCATCCGAATAAGAAAAC
1 CCAAGAGTAGCTAATAAGTTTAGCTCTAATTAAAATTGGCA-CCCAA-AAGAAAAA
* * * * * * ** ** * *
9207190 CCAAAAATAGCTAGTAGGTATAGCTCCAGCTCGAATTGGCACTCGAATTAGAAAAA
1 CCAAGAGTAGCTAATAAGTTTAGCTCTAATTAAAATTGGCAC-CCAA-AAGAAAAA
* * * *
9207246 CCAAGAGTAACTAATAAGTTTAGCTCTAATTAAAATTGGCGCCTAGATAAG-AAAG
1 CCAAGAGTAGCTAATAAGTTTAGCTCTAATTAAAATTGGCACCCA-A-AAGAAAAA
** * * * *
9207301 CCTAAGAGCGGCTGACAGGTTTAGTTCTAATTAAAATTGGCACCCAAAAGAAATAAA
1 CC-AAGAGTAGCTAATAAGTTTAGCTCTAATTAAAATTGGCACCCAAAAG-AA-AAA
* * * * *
9207358 TGCAAGAGTAGCTAATAAGTTTAGCTCTAGTTGAAATCGGCATCCAAA
1 -CCAAGAGTAGCTAATAAGTTTAGCTCTAATTAAAATTGGCACCCAAA
9207406 TGAGAAAGTC
Statistics
Matches: 209, Mismatches: 53, Indels: 18
0.75 0.19 0.06
Matches are distributed among these distances:
54 3 0.01
55 13 0.06
56 152 0.73
57 40 0.19
58 1 0.00
ACGTcount: A:0.40, C:0.17, G:0.19, T:0.24
Consensus pattern (54 bp):
CCAAGAGTAGCTAATAAGTTTAGCTCTAATTAAAATTGGCACCCAAAAGAAAAA
Found at i:9207438 original size:55 final size:55
Alignment explanation
Indices: 9207376--9207484 Score: 173
Period size: 55 Copynumber: 2.0 Consensus size: 55
9207366 TAGCTAATAA
* *
9207376 GTTTAGCTCTAGTTGAAATCGGCATCCAAATGAGAAAGTCTAAAAGCAACTAGTC
1 GTTTAGCTCTAGTTGAAATCGGCATCCAAATGAGAAAGCCCAAAAGCAACTAGTC
* * *
9207431 GTTTAGCTTTAGTTGAAATTGGCATCCAAATGAGAAAGCCCAAAAGTAACTAGT
1 GTTTAGCTCTAGTTGAAATCGGCATCCAAATGAGAAAGCCCAAAAGCAACTAGT
9207485 AGGTTTATTT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.27
Consensus pattern (55 bp):
GTTTAGCTCTAGTTGAAATCGGCATCCAAATGAGAAAGCCCAAAAGCAACTAGTC
Found at i:9208606 original size:11 final size:11
Alignment explanation
Indices: 9208577--9208620 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
9208567 ATTTTTTACC
9208577 TCTTTTTTCTGT
1 TCTTTTTTCT-T
*
9208589 TACTTTTTT-TC
1 T-CTTTTTTCTT
9208600 TCTTTTTTCTT
1 TCTTTTTTCTT
9208611 TCTTTTTTCT
1 TCTTTTTTCT
9208621 GTCTAGTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
10 7 0.25
11 12 0.43
12 2 0.07
13 7 0.25
ACGTcount: A:0.02, C:0.18, G:0.02, T:0.77
Consensus pattern (11 bp):
TCTTTTTTCTT
Found at i:9208615 original size:21 final size:23
Alignment explanation
Indices: 9208576--9208618 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
9208566 CATTTTTTAC
9208576 CTCTTTTTTCTGTTACTTTTTTT
1 CTCTTTTTTCTGTTACTTTTTTT
9208599 CTCTTTTTTCT-TT-CTTTTTT
1 CTCTTTTTTCTGTTACTTTTTT
9208619 CTGTCTAGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 7 0.35
22 2 0.10
23 11 0.55
ACGTcount: A:0.02, C:0.19, G:0.02, T:0.77
Consensus pattern (23 bp):
CTCTTTTTTCTGTTACTTTTTTT
Found at i:9210037 original size:16 final size:16
Alignment explanation
Indices: 9210002--9210051 Score: 64
Period size: 16 Copynumber: 3.1 Consensus size: 16
9209992 GCTCGAACGC
* *
9210002 AAAAAAGCCCGAATCCG
1 AAAAAA-CCTGAACCCG
*
9210019 AAAGAACCTGAACCCG
1 AAAAAACCTGAACCCG
9210035 AAAAAACCTGAACCCG
1 AAAAAACCTGAACCCG
9210051 A
1 A
9210052 GACTAACCCA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
16 24 0.83
17 5 0.17
ACGTcount: A:0.48, C:0.30, G:0.16, T:0.06
Consensus pattern (16 bp):
AAAAAACCTGAACCCG
Found at i:9210039 original size:32 final size:32
Alignment explanation
Indices: 9209977--9210040 Score: 76
Period size: 32 Copynumber: 2.0 Consensus size: 32
9209967 CCTGACACAA
* * *
9209977 CCCGAATCCGAGAAAGCTCGAACGCAAAAAAG
1 CCCGAATCCGAAAAACCTCGAACCCAAAAAAG
9210009 CCCGAATCCGAAAGAACCT-GAACCCGAAAAAA
1 CCCGAATCCGAAA-AACCTCGAACCC-AAAAAA
9210041 CCTGAACCCG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
32 17 0.63
33 10 0.37
ACGTcount: A:0.45, C:0.30, G:0.19, T:0.06
Consensus pattern (32 bp):
CCCGAATCCGAAAAACCTCGAACCCAAAAAAG
Found at i:9210858 original size:16 final size:17
Alignment explanation
Indices: 9210839--9210872 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
9210829 AATTAATATC
9210839 AAAAT-AAATATTATTA
1 AAAATGAAATATTATTA
*
9210855 AAAATGAAATTTTATTA
1 AAAATGAAATATTATTA
9210872 A
1 A
9210873 CTCTTTCTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (17 bp):
AAAATGAAATATTATTA
Done.