genome.fa.s2503.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2503
Parameters: 2 7 7 80 10 50 1000
Length:  160412

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1533--1565	2	16.5	2	93	0	57	0	45	0	54	0.99
1632--1656	2	12.5	2	100	0	50	48	0	0	52	1.00
2148--2173	5	5.2	5	100	0	52	61	0	0	38	0.96
3335--3381	2	23.5	2	95	0	85	51	0	0	48	1.00
3614--3692	34	2.4	34	81	10	92	50	0	0	49	1.00
3911--3944	10	3.4	10	88	12	52	26	0	0	73	0.83
4410--4460	23	2.3	22	87	9	77	49	0	0	50	1.00
4421--4470	23	2.2	23	85	7	66	48	0	0	52	1.00
9456--9500	16	2.8	16	79	0	54	42	0	0	57	0.98
9879--9919	13	3.2	13	75	25	50	56	2	2	39	1.26
9875--9971	26	3.7	26	78	13	92	49	3	1	46	1.24
9855--9979	14	8.9	15	68	19	67	49	3	0	46	1.23
9905--9982	28	2.9	28	75	11	81	50	2	0	47	1.15
9950--9997	17	2.7	18	78	12	55	56	0	0	43	0.99
11445--11552	42	2.6	42	86	2	155	33	15	24	26	1.95
11460--11525	21	3.1	21	74	8	80	27	13	30	28	1.94
14540--14640	43	2.3	43	94	0	175	18	15	20	44	1.87
24445--24478	13	2.7	12	86	13	50	5	0	29	64	1.17
26202--26239	18	2.1	18	95	0	67	55	0	0	44	0.99
26202--26256	16	3.2	17	82	7	58	58	0	0	41	0.98
26851--26882	14	2.4	14	90	10	50	25	0	0	75	0.81
26884--26910	8	3.4	8	100	0	54	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28400--28432	2	16.5	2	100	0	66	48	0	0	51	1.00
30576--30791	34	6.4	34	88	1	292	24	7	27	40	1.83
30576--30793	67	3.2	67	88	1	319	24	7	27	40	1.82
35207--35424	34	6.5	34	88	1	296	24	7	27	40	1.82
35207--35426	67	3.3	67	88	1	323	24	7	27	40	1.82
37497--37548	10	5.3	9	74	17	50	57	0	0	42	0.98
37498--37548	20	2.6	19	81	9	66	56	0	0	43	0.99
37985--38102	59	2.0	59	93	0	200	34	17	11	36	1.85
43456--43504	14	3.4	15	78	21	52	75	0	22	2	0.90
43479--43514	9	3.8	9	92	7	54	83	0	13	2	0.76
47619--47645	2	13.5	2	100	0	54	48	0	0	51	1.00
50319--50364	2	23.0	2	95	0	83	47	0	0	52	1.00
51124--51153	15	2.0	15	100	0	60	60	0	6	33	1.23
52198--52235	19	2.0	20	84	5	51	55	0	5	39	1.23
55475--55561	21	4.2	22	74	12	76	59	0	0	40	0.97
55475--55537	22	2.9	22	83	6	67	57	0	0	42	0.99
55471--55545	22	3.5	22	73	8	55	60	0	0	40	0.97
59035--59060	11	2.4	11	100	0	52	23	0	11	65	1.25
59985--60049	23	2.8	23	75	11	69	64	1	0	33	1.03
61708--61752	23	1.9	24	86	4	65	55	0	0	44	0.99
61703--61803	16	6.9	14	72	20	66	56	0	0	42	1.06
67070--67106	19	1.9	19	89	10	58	51	24	13	10	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67427--67468	19	2.0	22	86	13	63	61	4	0	33	1.17
71465--71501	14	2.6	14	100	0	74	67	5	0	27	1.12
72174--72198	13	1.9	13	100	0	50	40	8	4	48	1.51
76781--76847	30	2.2	30	81	7	73	55	0	0	44	0.99
76842--76884	16	2.6	16	81	3	50	62	0	0	37	0.95
76863--76892	13	2.2	14	94	5	53	66	0	0	33	0.92
77060--77123	23	2.8	23	77	13	69	43	0	0	56	0.99
78425--78466	22	1.9	22	100	0	84	19	9	19	52	1.72
87425--87656	79	2.9	78	79	6	225	26	25	14	33	1.95
87518--87691	79	2.2	79	86	0	240	27	27	14	31	1.95
88870--88964	20	4.8	20	89	0	154	32	13	11	42	1.81
105338--105395	9	5.9	9	84	12	62	86	12	1	0	0.65
106628--107829	28	41.9	29	85	5	1457	29	29	17	23	1.97
106628--107829	57	20.9	57	84	5	1365	29	29	17	23	1.97
108392--108468	20	3.8	20	77	6	84	33	14	10	41	1.80
108487--108537	20	2.5	20	96	0	93	39	11	15	33	1.84
110737--110789	27	2.0	26	92	7	90	22	32	13	32	1.92
118519--118643	20	5.7	20	72	22	108	31	15	11	42	1.82
119472--119512	22	2.0	22	85	9	59	24	19	9	46	1.80
123238--123314	20	3.8	20	82	0	109	32	10	11	45	1.75
123633--123672	21	1.9	21	100	0	80	35	40	10	15	1.80
124565--124631	27	2.5	27	97	0	125	23	38	14	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129526--129587	22	2.9	22	79	16	76	70	8	12	8	1.32
134620--135170	48	11.6	49	74	14	422	31	18	24	25	1.97
134620--135163	87	5.7	99	77	14	418	31	18	24	25	1.97
134855--135163	97	3.3	96	80	12	318	32	19	23	24	1.98
134904--135170	136	2.0	137	84	3	360	32	18	23	25	1.97
134663--135161	184	2.7	185	84	6	612	31	18	24	25	1.97
135040--135170	50	2.7	49	83	4	167	32	17	23	26	1.97
135244--135583	57	6.0	56	88	5	420	20	17	31	31	1.95
135199--135583	86	4.5	87	87	5	477	20	16	31	32	1.94
135224--135586	143	2.6	142	92	2	604	19	16	31	31	1.95
137012--137103	9	9.8	9	75	20	57	1	7	8	82	0.89
137015--137059	24	1.9	23	86	13	65	0	2	17	80	0.82
137048--137103	11	5.2	11	79	10	62	1	8	1	87	0.69
137022--137103	15	5.5	15	79	2	58	1	7	7	84	0.84
148039--148791	27	27.1	28	80	5	714	26	30	13	28	1.94
148040--148777	55	13.4	54	79	6	639	26	31	13	28	1.94
148746--149426	86	7.7	86	76	11	371	31	28	17	22	1.96
148809--149245	32	14.5	32	79	8	306	32	29	16	21	1.95
148811--149535	150	4.9	149	76	10	559	32	28	16	22	1.95
148779--149547	114	6.6	112	76	11	512	32	28	16	23	1.96
148553--149545	28	34.3	28	79	7	510	30	29	16	24	1.96
151700--151939	97	2.5	97	86	0	327	29	27	12	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156238--156283	13	3.2	15	73	20	53	17	2	0	80	0.81

Tables:   1

The End!