Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2504
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1293507
ACGTcount: A:0.25, C:0.14, G:0.14, T:0.25
Warning! 302448 characters in sequence are not A, C, G, or T
File 3 of 7
Found at i:356948 original size:54 final size:55
Alignment explanation
Indices: 356854--357093 Score: 304
Period size: 55 Copynumber: 4.3 Consensus size: 55
356844 TTCACTTCTT
* *
356854 AGTCCTCAAAGAGCAGGATACCTTTTAAAGCCCACACAAGTTGGTGGCACCTCTC
1 AGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTCTC
* *
356909 AGTCCTCAAAGAGTAGGACGCCTTT-AAAGCCCACACAAGTTGGTGGCACC-CTTC
1 AGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTC-TC
* * ** * *
356963 AGTCCTTAAAGAGCAGGATGCCTTTCAAAGCCCACACAAATTGGTGGCATTTTTTTTT
1 AGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCA---CCTCTC
* * * *
357021 AGTCCTCAAAGAGTAGGATGCCTTTCAAAACCCACACAAGTTGGTGGCACTTCCC
1 AGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTCTC
357076 AGTCCTCAAAGAGCAGGA
1 AGTCCTCAAAGAGCAGGA
357094 CACTCTCTCT
Statistics
Matches: 159, Mismatches: 20, Indels: 12
0.83 0.10 0.06
Matches are distributed among these distances:
53 1 0.01
54 49 0.31
55 63 0.40
58 46 0.29
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (55 bp):
AGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTCTC
Found at i:357212 original size:61 final size:61
Alignment explanation
Indices: 357117--357269 Score: 202
Period size: 61 Copynumber: 2.5 Consensus size: 61
357107 TGCCTTTTTG
357117 TCCTCAAAGAGCAGGATG-CTTTCTCTTTGT-AAAGCCCACACAAGTTGGCGGCACTATCCAA
1 TCCTCAAAGAGCAGGATGCCTTT-TCTTT-TCAAAGCCCACACAAGTTGGCGGCACTATCCAA
* * * * ** *
357178 TCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAG
1 TCCTCAAAGAGCAGGATGCCTTTTCTTTTCAAAGCCCACACAAGTTGGCGGCACTATCCAA
357239 TCCTCAAAGAGCAGGATGCCTTTTCCTTTTC
1 TCCTCAAAGAGCAGGATGCCTTTT-CTTTTC
357270 TCCTTTGTCC
Statistics
Matches: 81, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
60 1 0.01
61 70 0.86
62 10 0.12
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (61 bp):
TCCTCAAAGAGCAGGATGCCTTTTCTTTTCAAAGCCCACACAAGTTGGCGGCACTATCCAA
Found at i:357357 original size:45 final size:44
Alignment explanation
Indices: 357264--357424 Score: 154
Period size: 42 Copynumber: 3.7 Consensus size: 44
357254 ATGCCTTTTC
* * **
357264 CTTTTCTCCTTTGTCCTTAAAGAGCAGGACACAC-TT-CATTCCTTT
1 CTTTTC-CCTTTGTCCTCAAAGAGCAGGACGCACTTTGTTTTCC--T
357309 CTTTTCCCTTTTGTCCTCAAAGAGCAGGACGCACTTTGTTTTCCT
1 CTTTTCCC-TTTGTCCTCAAAGAGCAGGACGCACTTTGTTTTCCT
* *
357354 C-TTT-CTTTTGTCCTCAAAGAGCAGGACGCATTTTGTTTT-CT
1 CTTTTCCCTTTGTCCTCAAAGAGCAGGACGCACTTTGTTTTCCT
* * *
357395 TTTTTTCCTTTATCCTCGAAA-AGCAGGACG
1 CTTTTCCCTTTGTCCTC-AAAGAGCAGGACG
357425 TACTCTTTTT
Statistics
Matches: 101, Mismatches: 9, Indels: 14
0.81 0.07 0.11
Matches are distributed among these distances:
41 2 0.02
42 35 0.35
43 19 0.19
44 8 0.08
45 31 0.31
46 2 0.02
47 4 0.04
ACGTcount: A:0.19, C:0.26, G:0.15, T:0.40
Consensus pattern (44 bp):
CTTTTCCCTTTGTCCTCAAAGAGCAGGACGCACTTTGTTTTCCT
Found at i:357401 original size:87 final size:85
Alignment explanation
Indices: 357259--357424 Score: 194
Period size: 87 Copynumber: 1.9 Consensus size: 85
357249 GCAGGATGCC
* *
357259 TTTTCCTTTTCTCCTTTGTCCTTAAAGAGCAGGACACACTTCATTCCTTTCTTTTCCCTTTTGTC
1 TTTTCCTTTTCT-CTTTGTCCTCAAAGAGCAGGACACACTTCATTCCTTTCTTTT-CC-TTTATC
357324 CTC-AAAGAGCAGGACGCACTTTG
63 CTCGAAA-AGCAGGACGCACTTTG
* * ** *
357347 TTTTCCTCTTTCT-TTTGTCCTCAAAGAGCAGGACGCATTTTGTTTTCTTT-TTTTCCTTTATCC
1 TTTTCCT-TTTCTCTTTGTCCTCAAAGAGCAGGACACA-CTTCATTCCTTTCTTTTCCTTTATCC
357410 TCGAAAAGCAGGACG
64 TCGAAAAGCAGGACG
357425 TACTCTTTTT
Statistics
Matches: 68, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
85 17 0.25
86 5 0.07
87 26 0.38
88 15 0.22
89 5 0.07
ACGTcount: A:0.18, C:0.26, G:0.14, T:0.42
Consensus pattern (85 bp):
TTTTCCTTTTCTCTTTGTCCTCAAAGAGCAGGACACACTTCATTCCTTTCTTTTCCTTTATCCTC
GAAAAGCAGGACGCACTTTG
Found at i:358079 original size:21 final size:21
Alignment explanation
Indices: 358055--358110 Score: 103
Period size: 21 Copynumber: 2.7 Consensus size: 21
358045 TTTTTGCCAA
358055 AATGTATCGATACATGCCCTT
1 AATGTATCGATACATGCCCTT
358076 AATGTATCGATACATGCCCTT
1 AATGTATCGATACATGCCCTT
*
358097 AATGTATCAATACA
1 AATGTATCGATACA
358111 AGGCCCCAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.34, C:0.21, G:0.12, T:0.32
Consensus pattern (21 bp):
AATGTATCGATACATGCCCTT
Found at i:358201 original size:20 final size:20
Alignment explanation
Indices: 358147--358203 Score: 87
Period size: 20 Copynumber: 2.9 Consensus size: 20
358137 TTTTCACAAT
* *
358147 TTGTATCGATACATGGCTCA
1 TTGTATCGATACATTGTTCA
358167 TTGTATCGATACATTGTTCA
1 TTGTATCGATACATTGTTCA
*
358187 TTGTATCAATACATTGT
1 TTGTATCGATACATTGT
358204 ATCGATACAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.42
Consensus pattern (20 bp):
TTGTATCGATACATTGTTCA
Found at i:360678 original size:28 final size:28
Alignment explanation
Indices: 360620--360714 Score: 104
Period size: 28 Copynumber: 3.4 Consensus size: 28
360610 TGATCGGAGG
* *
360620 TACTCCAACCCCGTTATGTCATCGA-GG-A
1 TACTCCAACCCCATTAT-T-TTCGAGGGAA
* *
360648 TACTCCAATCCGATTATTTTCGAGGGAA
1 TACTCCAACCCCATTATTTTCGAGGGAA
* *
360676 TACTCCAACCCCATTATTTTTGAGGGGA
1 TACTCCAACCCCATTATTTTCGAGGGAA
360704 TACTCCAACCC
1 TACTCCAACCC
360715 TGGCTTTATA
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
26 4 0.07
27 3 0.05
28 50 0.88
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.28
Consensus pattern (28 bp):
TACTCCAACCCCATTATTTTCGAGGGAA
Found at i:360759 original size:107 final size:105
Alignment explanation
Indices: 360640--360902 Score: 273
Period size: 107 Copynumber: 2.4 Consensus size: 105
360630 CCGTTATGTC
* *
360640 ATCGAGGATACTCCAATCCGATTATTTTCGAGGGAATACTCCAACCCCATTATTTTTGAGGGGAT
1 ATCGGGGATACTCCAATCCG-TTATTTTCGAGGG-ATACTCCAACCCCATTATTTCTGAGGGGAT
* * * * ** *
360705 ACTCCAACCCTGGCTTTATAT-CTAAAATA-TTGATTTTTCATA
64 ACTCCAACCCCGACTTTAT-TCCCAAAACACCAG-TTTTTCACA
* * * * *
360747 ATCGGGGGTACTCCAACCCCGTTATGTCATCG-GGGATACTCCAATCCCGTTATTTCTGAGGGGA
1 ATCGGGGATACTCCAA-TCCGTTAT-T-TTCGAGGGATACTCCAACCCCATTATTTCTGAGGGGA
*
360811 TACTCCAACCCCGATTTTATTCCCAAAACACCAGTTTTTCACA
63 TACTCCAACCCCGACTTTATTCCCAAAACACCAGTTTTTCACA
360854 ATCGGGGATACTCCAATCCCGTTA-TTTCTGAGGGGATACTCCAACCCCA
1 ATCGGGGATACTCCAAT-CCGTTATTTTC-GA-GGGATACTCCAACCCCA
360903 ATTTTATTTC
Statistics
Matches: 127, Mismatches: 20, Indels: 18
0.77 0.12 0.11
Matches are distributed among these distances:
104 2 0.02
105 2 0.02
106 1 0.01
107 111 0.87
108 8 0.06
109 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (105 bp):
ATCGGGGATACTCCAATCCGTTATTTTCGAGGGATACTCCAACCCCATTATTTCTGAGGGGATAC
TCCAACCCCGACTTTATTCCCAAAACACCAGTTTTTCACA
Found at i:360784 original size:135 final size:135
Alignment explanation
Indices: 360540--360822 Score: 455
Period size: 135 Copynumber: 2.1 Consensus size: 135
360530 CATCTCGGGG
*
360540 ATACTCCAACCCCATTATTTTCGAGGGGATACTCCAACTCCGGCTTTATATCTAAAGTATGGATT
1 ATACTCCAACCCCATTATTTTCGAGGGGATACTCCAACTCCGGCTTTATATCTAAAATATGGATT
*
360605 TTTCATGATCGGAGGTACTCCAACCCCGTTATGTCATCGAGGATACTCCAAT-CCGATTATTT-T
66 TTTCATAATCGGAGGTACTCCAACCCCGTTATGTCATCGAGGATACTCCAATCCCG-TTATTTCT
360668 CGAGGGA
130 -GAGGGA
* *
360675 ATACTCCAACCCCATTATTTTTGAGGGGATACTCCAAC-CCTGGCTTTATATCTAAAATATTGAT
1 ATACTCCAACCCCATTATTTTCGAGGGGATACTCCAACTCC-GGCTTTATATCTAAAATATGGAT
* *
360739 TTTTCATAATCGGGGGTACTCCAACCCCGTTATGTCATCGGGGATACTCCAATCCCGTTATTTCT
65 TTTTCATAATCGGAGGTACTCCAACCCCGTTATGTCATCGAGGATACTCCAATCCCGTTATTTCT
*
360804 GAGGGG
130 GAGGGA
360810 ATACTCCAACCCC
1 ATACTCCAACCCC
360823 GATTTTATTC
Statistics
Matches: 138, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
134 2 0.01
135 132 0.96
136 4 0.03
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (135 bp):
ATACTCCAACCCCATTATTTTCGAGGGGATACTCCAACTCCGGCTTTATATCTAAAATATGGATT
TTTCATAATCGGAGGTACTCCAACCCCGTTATGTCATCGAGGATACTCCAATCCCGTTATTTCTG
AGGGA
Found at i:360787 original size:28 final size:28
Alignment explanation
Indices: 360747--360823 Score: 102
Period size: 28 Copynumber: 2.8 Consensus size: 28
360737 ATTTTTCATA
*
360747 ATCGGGGGTACTCCAACCCCGTTATGTC
1 ATCGGGGATACTCCAACCCCGTTATGTC
* *
360775 ATCGGGGATACTCCAATCCCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATGTC
*
360803 -TGAGGGGATACTCCAACCCCG
1 AT-CGGGGATACTCCAACCCCG
360824 ATTTTATTCC
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
27 1 0.02
28 42 0.98
ACGTcount: A:0.21, C:0.31, G:0.23, T:0.25
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTATGTC
Found at i:360868 original size:79 final size:79
Alignment explanation
Indices: 360775--360948 Score: 276
Period size: 79 Copynumber: 2.2 Consensus size: 79
360765 CCGTTATGTC
*
360775 ATCGGGGATACTCCAATCCCGTTATTTCTGAGGGGATACTCCAACCCCGATTTTATTCCCAAAAC
1 ATCGGGGATACTCCAATCCCGTTATTTCTGAGGGGATACTCCAACCCCAATTTTATTCCCAAAAC
* *
360840 ACCAGTTTTTCACA
66 ACCAATTTTCCACA
* * *
360854 ATCGGGGATACTCCAATCCCGTTATTTCTGAGGGGATACTCCAACCCCAATTTTATTTCTAAAAT
1 ATCGGGGATACTCCAATCCCGTTATTTCTGAGGGGATACTCCAACCCCAATTTTATTCCCAAAAC
360919 ACCAATTTTCCACA
66 ACCAATTTTCCACA
* *
360933 ATCGGAGATATTCCAA
1 ATCGGGGATACTCCAA
360949 CTCCGGTTTT
Statistics
Matches: 87, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
79 87 1.00
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (79 bp):
ATCGGGGATACTCCAATCCCGTTATTTCTGAGGGGATACTCCAACCCCAATTTTATTCCCAAAAC
ACCAATTTTCCACA
Found at i:360959 original size:51 final size:51
Alignment explanation
Indices: 360888--361004 Score: 164
Period size: 51 Copynumber: 2.3 Consensus size: 51
360878 TTTCTGAGGG
* ** *
360888 GATACTCCAACCCCAATTTTATTTCTAAAATACCAATTT-TCCACAATCGGA
1 GATACTCCAACTCCGGTTTTATTTCTAAAACACCAATTTCT-CACAATCGGA
* *
360939 GATATTCCAACTCCGGTTTTATTTCTAAAACACCAATTTCTCACAATCGGG
1 GATACTCCAACTCCGGTTTTATTTCTAAAACACCAATTTCTCACAATCGGA
360990 GATACTCCAACTCCG
1 GATACTCCAACTCCG
361005 TTATTTCTGA
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
51 57 0.98
52 1 0.02
ACGTcount: A:0.32, C:0.28, G:0.09, T:0.31
Consensus pattern (51 bp):
GATACTCCAACTCCGGTTTTATTTCTAAAACACCAATTTCTCACAATCGGA
Found at i:361130 original size:122 final size:123
Alignment explanation
Indices: 360807--361152 Score: 382
Period size: 122 Copynumber: 2.8 Consensus size: 123
360797 TATTTCTGAG
* ** *
360807 GGGATACTCCAACCCCGATTTTATTCCCAAAACACCAGTTTTTC-ACAATCGGGGATACTCCAAT
1 GGGATACTCCAACTCCGATTTTATTTTCAAAACACC-GATTTTCTACAATCGGGGATACTCCAA-
* *
360871 CCCGTTATTTCTGAGGGGATACTCCAACCCCAATTTTATTTCTAAAATACCAATTTTCCACAATC
64 CCCGTTATTTCTGAGGGGATACTCCAA-CCC-A--TGACTTCT-AAATACCAATTTTCCACAATC
* * *
360936 GGAGATATTCCAACTCCGGTTTTA-TTTCTAAAACACC-AATTTCTCACAATCGGGGATACTCCA
1 GG-GATACTCCAACTCCGATTTTATTTTC-AAAACACCGATTTTCT-ACAATCGGGGATACTCCA
*
360999 ACTCCGTTATTTCTGAGGGGATACTCCAACCC-TGACTT-T-ATTACCAATTTTCCACAATC
63 AC-CCGTTATTTCTGAGGGGATACTCCAACCCATGACTTCTAAATACCAATTTTCCACAATC
* * * **
361058 GAGGATACTCCAACTCTGATTTTATTTTCAAAATACCGATTTTCTATAATTAGGGATACTCCAAC
1 G-GGATACTCCAACTCCGATTTTATTTTCAAAACACCGATTTTCTACAATCGGGGATACTCCAAC
361123 CCTGTTATTT-TCGAGGGGATACTCCAACCC
65 CC-GTTATTTCT-GAGGGGATACTCCAACCC
361153 CGATTTTTAT
Statistics
Matches: 189, Mismatches: 18, Indels: 27
0.81 0.08 0.12
Matches are distributed among these distances:
121 3 0.02
122 87 0.46
123 11 0.06
124 1 0.01
125 4 0.02
128 4 0.02
129 8 0.04
130 71 0.38
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.32
Consensus pattern (123 bp):
GGGATACTCCAACTCCGATTTTATTTTCAAAACACCGATTTTCTACAATCGGGGATACTCCAACC
CGTTATTTCTGAGGGGATACTCCAACCCATGACTTCTAAATACCAATTTTCCACAATC
Found at i:365146 original size:13 final size:13
Alignment explanation
Indices: 365130--365154 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
365120 AGAATGAACA
365130 TGTATCGATACAT
1 TGTATCGATACAT
365143 TGTATCGATACA
1 TGTATCGATACA
365155 AAGCAATATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:365815 original size:23 final size:23
Alignment explanation
Indices: 365786--365867 Score: 91
Period size: 22 Copynumber: 3.7 Consensus size: 23
365776 AAATTATAAC
*
365786 TCCCCTTTAATTAAAAATTTTC-
1 TCCCCCTTAATTAAAAATTTTCT
*
365808 TCCCCCTTAATAAAAAATTTTCT
1 TCCCCCTTAATTAAAAATTTTCT
*
365831 TCCCCCTTAA-T-AAAATTTCTTT
1 TCCCCCTTAATTAAAAATTT-TCT
*
365853 TTCCCCTTAA-TAAAA
1 TCCCCCTTAATTAAAA
365868 TTTCTCCCTC
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
21 7 0.13
22 32 0.62
23 13 0.25
ACGTcount: A:0.33, C:0.26, G:0.00, T:0.41
Consensus pattern (23 bp):
TCCCCCTTAATTAAAAATTTTCT
Found at i:371949 original size:21 final size:21
Alignment explanation
Indices: 371923--371965 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
371913 TGTTTCTTGG
371923 AAACCATGATATGAGTATATT
1 AAACCATGATATGAGTATATT
371944 AAACCATGATATGAGTATATT
1 AAACCATGATATGAGTATATT
371965 A
1 A
371966 CCAAGAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.44, C:0.09, G:0.14, T:0.33
Consensus pattern (21 bp):
AAACCATGATATGAGTATATT
Found at i:375099 original size:15 final size:15
Alignment explanation
Indices: 375077--375114 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
375067 TTCTAGTTCG
*
375077 ACAATTTTCTTTTCA
1 ACAATTTTATTTTCA
*
375092 AGAATTTTATTTTCA
1 ACAATTTTATTTTCA
375107 ACAATTTT
1 ACAATTTT
375115 TTATTTATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.32, C:0.13, G:0.03, T:0.53
Consensus pattern (15 bp):
ACAATTTTATTTTCA
Found at i:377010 original size:18 final size:18
Alignment explanation
Indices: 376987--377024 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
376977 AAAAATGAGC
376987 AACCTTCCCTTTAAAATA
1 AACCTTCCCTTTAAAATA
377005 AACCTTCCCTTTAAAATA
1 AACCTTCCCTTTAAAATA
377023 AA
1 AA
377025 GGCTTCAGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.42, C:0.26, G:0.00, T:0.32
Consensus pattern (18 bp):
AACCTTCCCTTTAAAATA
Found at i:377743 original size:21 final size:21
Alignment explanation
Indices: 377719--377774 Score: 112
Period size: 21 Copynumber: 2.7 Consensus size: 21
377709 AATTTATCCA
377719 AATGTATCGATACATTTGTGG
1 AATGTATCGATACATTTGTGG
377740 AATGTATCGATACATTTGTGG
1 AATGTATCGATACATTTGTGG
377761 AATGTATCGATACA
1 AATGTATCGATACA
377775 ATCTACAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.36
Consensus pattern (21 bp):
AATGTATCGATACATTTGTGG
Found at i:377951 original size:34 final size:33
Alignment explanation
Indices: 377886--377952 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 33
377876 GCCAAGGGAA
*
377886 TGTATCGATACATTTTTCTGTGTATCAATACAT
1 TGTATCGATACATTATTCTGTGTATCAATACAT
* * *
377919 TGTATCGATAGATCTATTCTTTGTATCGATACAT
1 TGTATCGATACAT-TATTCTGTGTATCAATACAT
377953 CTAGGAAGTT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
33 12 0.41
34 17 0.59
ACGTcount: A:0.27, C:0.15, G:0.13, T:0.45
Consensus pattern (33 bp):
TGTATCGATACATTATTCTGTGTATCAATACAT
Found at i:380475 original size:28 final size:27
Alignment explanation
Indices: 380405--380480 Score: 109
Period size: 27 Copynumber: 2.8 Consensus size: 27
380395 TTTCTTCACA
380405 ATCGGGGATACTCCAACCCCGTTAATC
1 ATCGGGGATACTCCAACCCCGTTAATC
*
380432 ATCGGGGATACTCCAACCCCGTT-ATT
1 ATCGGGGATACTCCAACCCCGTTAATC
*
380458 TTCGAGGGGATACTCCAACCCCG
1 ATC--GGGGATACTCCAACCCCG
380481 ACTTTATTTC
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
26 4 0.09
27 23 0.51
28 18 0.40
ACGTcount: A:0.24, C:0.33, G:0.21, T:0.22
Consensus pattern (27 bp):
ATCGGGGATACTCCAACCCCGTTAATC
Found at i:380531 original size:51 final size:51
Alignment explanation
Indices: 380463--380680 Score: 201
Period size: 52 Copynumber: 4.3 Consensus size: 51
380453 TTATTTTCGA
* * *** *
380463 GGGGATACTCCAACCCCGACTTTATTTCCAAAATATTGATTTTTCATAATC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATC
* * * *
380514 GGGGATACTCCAACCCCGGTTTTATTGCTAAAACACTAATTTTTCCACAATC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTT-CACAATC
* * * * **
380566 ----AGACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAATC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTC-ACAATC
* * *
380614 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTCTTCACAATC
1 GGGGATACTCCAACCCCGATTTTATTTCC-AAAACACCAATTTTTCACAATC
*
380666 GAGGATACTCCAACC
1 GGGGATACTCCAACC
380681 TCGTTATAAC
Statistics
Matches: 133, Mismatches: 27, Indels: 13
0.77 0.16 0.08
Matches are distributed among these distances:
47 1 0.01
48 38 0.29
51 37 0.28
52 44 0.33
53 13 0.10
ACGTcount: A:0.30, C:0.27, G:0.11, T:0.32
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATC
Found at i:380637 original size:52 final size:53
Alignment explanation
Indices: 380299--380680 Score: 206
Period size: 51 Copynumber: 7.4 Consensus size: 53
380289 AATTCTCCAC
* * * * *
380299 AATCGGGGAAATTCCAACTCCGATTTTATTTTC-AAAACACTAATTTT-CTAT
1 AATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACACCAATTTTCCTAT
* * *
380350 AATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAAACACCAA-TTTCTTCAC
1 AATCGGGGATACTCCAACCCCGATTTTATTTCC-AAAAACACCAATTTTCCT-AT
* * *** * * **
380404 AATCGGGGATACTCCAACCCCG--TTAATCATCGGGGATACTCCAA--CCCCGTTAT
1 AATCGGGGATACTCCAACCCCGATTTTAT-TTC-CAAAAACACCAATTTTCC--TAT
** * * *** *
380457 TTTCGAGGGGATACTCCAACCCCGACTTTATTTCC-AAAATATTGATTTTTC-AT
1 AATC--GGGGATACTCCAACCCCGATTTTATTTCCAAAAACACCAATTTTCCTAT
* * * * *
380510 AATCGGGGATACTCCAACCCCGGTTTTA-TTGCTAAAACACTAATTTTTCC-AC
1 AATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACACCAA-TTTTCCTAT
* * * *
380562 AATC----AGACTCCAACCCCGGTTTTATTTTC-AAAACACCAATTTTCCTTT
1 AATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACACCAATTTTCCTAT
* * *
380610 AATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTCTT-C-AC
1 AATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACACCAATT-TTCCTAT
*
380662 AATCGAGGATACTCCAACC
1 AATCGGGGATACTCCAACC
380681 TCGTTATAAC
Statistics
Matches: 250, Mismatches: 57, Indels: 47
0.71 0.16 0.13
Matches are distributed among these distances:
47 6 0.02
48 32 0.13
49 3 0.01
50 3 0.01
51 59 0.24
52 56 0.22
53 38 0.15
54 28 0.11
55 18 0.07
56 3 0.01
57 4 0.02
ACGTcount: A:0.30, C:0.27, G:0.12, T:0.31
Consensus pattern (53 bp):
AATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACACCAATTTTCCTAT
Found at i:380781 original size:259 final size:259
Alignment explanation
Indices: 380311--380790 Score: 793
Period size: 259 Copynumber: 1.9 Consensus size: 259
380301 TCGGGGAAAT
* *
380311 TCCAACTCCGATTTTATTTTCAAAACACTAATTTTCTATAATCGGGGATACTCCAACTCCGATTT
1 TCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGATACTCCAACTCCGATTT
* *
380376 TATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATACTCCAACCCCGTTAATCATCGGGGAT
66 TATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCCCGTTAAACATCGGGGAT
* * * *
380441 ACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTATTTCCAAAATATTGATTTT
131 ACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGACTTTATTCCCAAAATATTGATTTC
380506 TCATAATCGGGGATACTCCAACCCCGGTTTTATTGCTAAAACACTAATTTTTCCACAATCAGAC
196 TCATAATCGGGGATACTCCAACCCCGGTTTTATTGCTAAAACACTAATTTTTCCACAATCAGAC
* *
380570 TCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGATACTCCAACTCCGATT
1 TCCAACCCCGATTTTATTTTCAAAACACCAATTTT-CTATAATCGGGGATACTCCAACTCCGATT
* *
380635 TTATTTCC-AAAAATACCAA-TTCTTCACAATCGAGGATACTCCAACCTCGTTATAACATCGGGG
65 TTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCCCGTTA-AACATCGGGG
*
380698 ATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCCAAAATATTGATT
129 ATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGACTTTATTCCCAAAATATTGATT
* *
380763 TCTCATAATTGGGGATACTCTAACCCCG
194 TCTCATAATCGGGGATACTCCAACCCCG
380791 TTATTTTCGA
Statistics
Matches: 204, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
258 31 0.15
259 137 0.67
260 36 0.18
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (259 bp):
TCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGATACTCCAACTCCGATTT
TATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCCCGTTAAACATCGGGGAT
ACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGACTTTATTCCCAAAATATTGATTTC
TCATAATCGGGGATACTCCAACCCCGGTTTTATTGCTAAAACACTAATTTTTCCACAATCAGAC
Found at i:384866 original size:52 final size:52
Alignment explanation
Indices: 384810--384911 Score: 136
Period size: 53 Copynumber: 2.0 Consensus size: 52
384800 GATGGGGTTA
*
384810 AAGTAT-CCCAAAAATGTAAATTTAAGATTTATTTGCAAGAAAAACG-GGATTG
1 AAGTATCCCCAAAAATGTAAATTCAAGA-TT-TTTGCAAGAAAAACGAGGATTG
* * *
384862 AAGTATCCCCGAGAATGTAAATTCAAGATTTTTGTAAGAAAAACGAGGAT
1 AAGTATCCCCAAAAATGTAAATTCAAGATTTTTGCAAGAAAAACGAGGAT
384912 GGAGTATTCC
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
51 14 0.32
52 12 0.27
53 18 0.41
ACGTcount: A:0.43, C:0.11, G:0.19, T:0.27
Consensus pattern (52 bp):
AAGTATCCCCAAAAATGTAAATTCAAGATTTTTGCAAGAAAAACGAGGATTG
Found at i:385147 original size:131 final size:130
Alignment explanation
Indices: 384963--385226 Score: 336
Period size: 131 Copynumber: 2.0 Consensus size: 130
384953 AAATGATAAC
* * * * *
384963 TTTGGTGTTTTAAGCAAGTACTTAGGAACCTCAAATAAATCCGGGAAAGAAAATATGAGTTTCTA
1 TTTGATGTTTTAAGCAAGTAATTAGGAACCTCAAATAAATCCAGAAAAAAAAATATGAGTTTCTA
* * * * * *
385028 GTGGCAAATAAGGTTGGAGTATCCCTTT-AGAGTGGTGAGGTTGGAGTATCCCCTAAG-GATGAA
66 GTAGAAAACAAGGTTGGAGTAT-CCTTTCAAAGTGGTGAGGTTAGAATA-CCCCTAAGAG-TGAA
385091 AAT
128 AAT
* *
385094 TTTGATGTTTTAAGCAAGTAATTAGGAACCT-AGAATGAATCTAGAAAAAAAAATATGAGTTTCT
1 TTTGATGTTTTAAGCAAGTAATTAGGAACCTCA-AATAAATCCAGAAAAAAAAATATGAGTTTCT
* *
385158 AGTAGAAAACAAGGTTGGAGTATTCTTTCAAAGTGGTGGGGTTAGAATACCCCTAAGAGTGAAAA
65 AGTAGAAAACAAGGTTGGAGTATCCTTTCAAAGTGGTGAGGTTAGAATACCCCTAAGAGTGAAAA
385223 T
130 T
385224 TTT
1 TTT
385227 TTATAATTTA
Statistics
Matches: 115, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
130 23 0.20
131 92 0.80
ACGTcount: A:0.36, C:0.11, G:0.24, T:0.30
Consensus pattern (130 bp):
TTTGATGTTTTAAGCAAGTAATTAGGAACCTCAAATAAATCCAGAAAAAAAAATATGAGTTTCTA
GTAGAAAACAAGGTTGGAGTATCCTTTCAAAGTGGTGAGGTTAGAATACCCCTAAGAGTGAAAAT
Found at i:385273 original size:16 final size:16
Alignment explanation
Indices: 385249--385285 Score: 53
Period size: 13 Copynumber: 2.5 Consensus size: 16
385239 AGAAAAAGGA
385249 TATTTATTA-TA-T-T
1 TATTTATTATTATTGT
385262 TATTTATTATTATTGT
1 TATTTATTATTATTGT
385278 TATTTATT
1 TATTTATT
385286 TTTTTATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 9 0.43
14 2 0.10
15 1 0.05
16 9 0.43
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (16 bp):
TATTTATTATTATTGT
Found at i:396227 original size:26 final size:26
Alignment explanation
Indices: 396197--396251 Score: 83
Period size: 27 Copynumber: 2.1 Consensus size: 26
396187 TCTTTTTTAA
* *
396197 AAAAAAAAACAAAAAAACAAAGCAAAG
1 AAAAAAAAAGAAAAAAA-AAAGAAAAG
396224 AAAAAAAAAGAAAAAAAAAAGAAAAG
1 AAAAAAAAAGAAAAAAAAAAGAAAAG
396250 AA
1 AA
396252 CCTGCTTGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 10 0.38
27 16 0.62
ACGTcount: A:0.85, C:0.05, G:0.09, T:0.00
Consensus pattern (26 bp):
AAAAAAAAAGAAAAAAAAAAGAAAAG
Found at i:397332 original size:54 final size:55
Alignment explanation
Indices: 397218--397461 Score: 287
Period size: 55 Copynumber: 4.4 Consensus size: 55
397208 TTCACTTCTT
* * *
397218 AGTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGTTAGTGGGACCTTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTAGTGGCACCCTTC
* *
397273 TGTCCTCAAAGAGCAGGACGCC-TTTAAAGCCCACACAAGTTGGTGGCACCCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTAGTGGCACCCTTC
* * *** *
397327 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTTTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTAGTGGCA----CCCTTC
* * *
397386 AGTCCTCAAAGAGCAGGATGCCTTTTGAAGCCCACACAAATTAGTGGCA--CTTCCC
1 AGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTAGTGGCACCCTT--C
397441 AGTCCTCAAAGAGCAGGACGC
1 AGTCCTCAAAGAGCAGGACGC
397462 TCTCTCCATT
Statistics
Matches: 163, Mismatches: 19, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
53 2 0.01
54 50 0.31
55 65 0.40
59 46 0.28
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (55 bp):
AGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTAGTGGCACCCTTC
Found at i:397353 original size:26 final size:26
Alignment explanation
Indices: 397267--397353 Score: 61
Period size: 26 Copynumber: 3.3 Consensus size: 26
397257 GTTAGTGGGA
*
397267 CCTTTCTGTCCTCAAAGAGCAGGACG
1 CCTTTCAGTCCTCAAAGAGCAGGACG
* * * * **
397293 CCTTTAAAGCCCACACAAGTTGGTGGCAC-
1 CCTTT-CAGTCCTCA-AAG-AGCAGG-ACG
397322 CC-TTCAGTCCTCAAAGAGCAGGACG
1 CCTTTCAGTCCTCAAAGAGCAGGACG
397347 CCTTTCA
1 CCTTTCA
397354 AAGCCCACAC
Statistics
Matches: 42, Mismatches: 13, Indels: 12
0.63 0.19 0.18
Matches are distributed among these distances:
24 2 0.05
25 5 0.12
26 12 0.29
27 11 0.26
28 5 0.12
29 5 0.12
30 2 0.05
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.22
Consensus pattern (26 bp):
CCTTTCAGTCCTCAAAGAGCAGGACG
Found at i:397681 original size:61 final size:61
Alignment explanation
Indices: 397502--397687 Score: 205
Period size: 61 Copynumber: 3.1 Consensus size: 61
397492 GTAGGACACC
* * * *
397502 TTTTAAAGCTCACACAAGTTGGTGGCACTTCCT-GTCCTCAAAGAGCAGGATGCTTTTTCT
1 TTTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGTAGGATGCCTTTTCT
** * * * * ** * *
397562 TTGCAAAGCCCACACAAGTTGGCGGCACTTTCCAATCTTCAAAGAGTAAAACGTCTTTTCT
1 TTTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGTAGGATGCCTTTTCT
* *
397623 TTTTAAAGCCCACA-AGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGTAGGATGCCTTTTCC
1 TTTTAAAGCCCACACA-AGTTGGTGGCACTTTCTAGTCCTCAAAGAGTAGGATGCCTTTTCT
397684 TTTT
1 TTTT
397688 CTCCTTTGTC
Statistics
Matches: 98, Mismatches: 26, Indels: 3
0.77 0.20 0.02
Matches are distributed among these distances:
60 28 0.29
61 70 0.71
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (61 bp):
TTTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGTAGGATGCCTTTTCT
Found at i:398577 original size:13 final size:13
Alignment explanation
Indices: 398559--398621 Score: 66
Period size: 13 Copynumber: 5.3 Consensus size: 13
398549 ATACATTGCT
398559 CATTGTATCGATA
1 CATTGTATCGATA
398572 CATTGTATCGATA
1 CATTGTATCGATA
398585 CATTG---C--T-
1 CATTGTATCGATA
* *
398592 TATTGTATCAATA
1 CATTGTATCGATA
398605 CATTGTATCGATA
1 CATTGTATCGATA
398618 CATT
1 CATT
398622 TTACAATGTA
Statistics
Matches: 41, Mismatches: 3, Indels: 12
0.73 0.05 0.21
Matches are distributed among these distances:
7 4 0.10
8 1 0.02
10 2 0.05
12 1 0.02
13 33 0.80
ACGTcount: A:0.30, C:0.16, G:0.13, T:0.41
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:398583 original size:33 final size:33
Alignment explanation
Indices: 398541--398641 Score: 150
Period size: 33 Copynumber: 3.1 Consensus size: 33
398531 TTTTCCCAAT
398541 TTGTATCGATACATTGCTCATTGTATCGATACA
1 TTGTATCGATACATTGCTCATTGTATCGATACA
* *
398574 TTGTATCGATACATTGCTTATTGTATCAATACA
1 TTGTATCGATACATTGCTCATTGTATCGATACA
* *
398607 TTGTATCGATACATT-TTACAATGTATCGATACA
1 TTGTATCGATACATTGCT-CATTGTATCGATACA
398640 TT
1 TT
398642 CAGGCATTTT
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
32 1 0.02
33 60 0.98
ACGTcount: A:0.30, C:0.16, G:0.13, T:0.42
Consensus pattern (33 bp):
TTGTATCGATACATTGCTCATTGTATCGATACA
Found at i:398598 original size:20 final size:19
Alignment explanation
Indices: 398541--398609 Score: 69
Period size: 20 Copynumber: 3.8 Consensus size: 19
398531 TTTTCCCAAT
398541 TTGTATCGATACATTGCTCA
1 TTGTATCGATACATTGCT-A
398561 TTGTATCGAT--A---C-A
1 TTGTATCGATACATTGCTA
398574 TTGTATCGATACATTGCTTA
1 TTGTATCGATACATTGC-TA
*
398594 TTGTATCAATACATTG
1 TTGTATCGATACATTG
398610 TATCGATACA
Statistics
Matches: 41, Mismatches: 1, Indels: 14
0.73 0.02 0.25
Matches are distributed among these distances:
13 11 0.27
15 2 0.05
18 2 0.05
20 26 0.63
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (19 bp):
TTGTATCGATACATTGCTA
Found at i:398626 original size:20 final size:20
Alignment explanation
Indices: 398603--398641 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
398593 ATTGTATCAA
*
398603 TACATTGTATCGATACATTT
1 TACAATGTATCGATACATTT
398623 TACAATGTATCGATACATT
1 TACAATGTATCGATACATT
398642 CAGGCATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.41
Consensus pattern (20 bp):
TACAATGTATCGATACATTT
Found at i:401070 original size:28 final size:26
Alignment explanation
Indices: 401019--401100 Score: 74
Period size: 28 Copynumber: 3.0 Consensus size: 26
401009 ATTTTTCATG
* *
401019 ATCGGGGGTACTCCAACCTTGTTATGTC
1 ATCGGGGATACTCCAACC-CGTTAT-TC
*
401047 ATCGGGGATACTCCAATCCCGTTATTT
1 ATCGGGGATACTCCAA-CCCGTTATTC
* *
401074 TTGAGGGGATACTCCAACCCCGTTATT
1 AT-CGGGGATACTCCAA-CCCGTTATT
401101 TTTGAGGTGA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
27 2 0.04
28 42 0.91
29 2 0.04
ACGTcount: A:0.21, C:0.26, G:0.22, T:0.32
Consensus pattern (26 bp):
ATCGGGGATACTCCAACCCGTTATTC
Found at i:401101 original size:28 final size:28
Alignment explanation
Indices: 401050--401120 Score: 124
Period size: 28 Copynumber: 2.5 Consensus size: 28
401040 TTATGTCATC
*
401050 GGGGATACTCCAATCCCGTTATTTTTGA
1 GGGGATACTCCAACCCCGTTATTTTTGA
401078 GGGGATACTCCAACCCCGTTATTTTTGA
1 GGGGATACTCCAACCCCGTTATTTTTGA
*
401106 GGTGATACTCCAACC
1 GGGGATACTCCAACC
401121 TCGGCTTTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.31
Consensus pattern (28 bp):
GGGGATACTCCAACCCCGTTATTTTTGA
Found at i:401158 original size:107 final size:106
Alignment explanation
Indices: 401047--401307 Score: 310
Period size: 107 Copynumber: 2.5 Consensus size: 106
401037 TTGTTATGTC
** *
401047 ATCGGGGATACTCCAATCCCGTTATTTTTGAGGGGATACTCCAACCCCGTTATTTTTGAGGTGAT
1 ATCGGGGATACTCCAATCCCGTTATTTTTGAGGGGATACTCCAACCCCGTTATTTCCGAGGGGAT
* * ** * *
401112 ACTCCAACCTCGGCTTTATAT-CTAAAATATTGATTTTTCATA
66 ACTCCAACCTCGACTTTAT-TCCCAAAATA-CCAGTTTTCACA
* * ** * *
401154 ATCGGGGGTACTCCAACCCCGTTATGTCAT-CGGGGATACTCCAATCCCGTTATTTCCGAGGGGA
1 ATCGGGGATACTCCAATCCCGTTAT-TTTTGAGGGGATACTCCAACCCCGTTATTTCCGAGGGGA
*
401218 TACTCCAACCTCGATTTTATTCCCAAAATACCAGTTTTCACA
65 TACTCCAACCTCGACTTTATTCCCAAAATACCAGTTTTCACA
* * *
401260 ATCAGGGATAGTCCAATCCCGTTATTTTCGAGGGGATACTCCAACCCC
1 ATCGGGGATACTCCAATCCCGTTATTTTTGAGGGGATACTCCAACCCC
401308 TATTTTATTT
Statistics
Matches: 126, Mismatches: 25, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
105 1 0.01
106 46 0.37
107 77 0.61
108 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (106 bp):
ATCGGGGATACTCCAATCCCGTTATTTTTGAGGGGATACTCCAACCCCGTTATTTCCGAGGGGAT
ACTCCAACCTCGACTTTATTCCCAAAATACCAGTTTTCACA
Found at i:401187 original size:135 final size:135
Alignment explanation
Indices: 400945--401227 Score: 467
Period size: 135 Copynumber: 2.1 Consensus size: 135
400935 TTCATCTCGA
*
400945 GGATACTCCAACCCCATTATTTCTGAGGGGATACTCCAACCCCGGCTTTATATCTAAAGTATGGA
1 GGATACTCCAACCCCATTATTTCTGAGGGGATACTCCAACCCCGGCTTTATATCTAAAATATGGA
* ** *
401010 TTTTTCATGATCGGGGGTACTCCAACCTTGTTATGTCATCGGGGATACTCCAATCCCGTTATTTT
66 TTTTTCATAATCGGGGGTACTCCAACCCCGTTATGTCATCGGGGATACTCCAATCCCGTTATTTC
*
401075 TGAGG
131 CGAGG
* * * * *
401080 GGATACTCCAACCCCGTTATTTTTGAGGTGATACTCCAACCTCGGCTTTATATCTAAAATATTGA
1 GGATACTCCAACCCCATTATTTCTGAGGGGATACTCCAACCCCGGCTTTATATCTAAAATATGGA
401145 TTTTTCATAATCGGGGGTACTCCAACCCCGTTATGTCATCGGGGATACTCCAATCCCGTTATTTC
66 TTTTTCATAATCGGGGGTACTCCAACCCCGTTATGTCATCGGGGATACTCCAATCCCGTTATTTC
401210 CGAGG
131 CGAGG
401215 GGATACTCCAACC
1 GGATACTCCAACC
401228 TCGATTTTAT
Statistics
Matches: 137, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
135 137 1.00
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (135 bp):
GGATACTCCAACCCCATTATTTCTGAGGGGATACTCCAACCCCGGCTTTATATCTAAAATATGGA
TTTTTCATAATCGGGGGTACTCCAACCCCGTTATGTCATCGGGGATACTCCAATCCCGTTATTTC
CGAGG
Found at i:401194 original size:28 final size:28
Alignment explanation
Indices: 401154--401227 Score: 94
Period size: 28 Copynumber: 2.6 Consensus size: 28
401144 ATTTTTCATA
*
401154 ATCGGGGGTACTCCAACCCCGTTATGTC
1 ATCGGGGATACTCCAACCCCGTTATGTC
* *
401182 ATCGGGGATACTCCAATCCCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATGTC
***
401210 CGAGGGGATACTCCAACC
1 ATCGGGGATACTCCAACC
401228 TCGATTTTAT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.22, C:0.31, G:0.23, T:0.24
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTATGTC
Found at i:401315 original size:78 final size:79
Alignment explanation
Indices: 401186--401341 Score: 242
Period size: 78 Copynumber: 2.0 Consensus size: 79
401176 TATGTCATCG
*
401186 GGGATACTCCAATCCCGTTATTTCCGAGGGGATACTCCAACCTCGATTTTATTCCCAAAATACCA
1 GGGATACTCCAATCCCGTTATTTCCGAGGGGATACTCCAACCCCGATTTTATTCCCAAAATACCA
*
401251 GTTTT-CACAATCA
66 ATTTTCCACAATCA
* * * * *
401264 GGGATAGTCCAATCCCGTTATTTTCGAGGGGATACTCCAACCCCTATTTTATTTCTAAAATACCA
1 GGGATACTCCAATCCCGTTATTTCCGAGGGGATACTCCAACCCCGATTTTATTCCCAAAATACCA
401329 ATTTTCCACAATC
66 ATTTTCCACAATC
401342 GGAGAAATTT
Statistics
Matches: 70, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
78 63 0.90
79 7 0.10
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.31
Consensus pattern (79 bp):
GGGATACTCCAATCCCGTTATTTCCGAGGGGATACTCCAACCCCGATTTTATTCCCAAAATACCA
ATTTTCCACAATCA
Found at i:403685 original size:4 final size:4
Alignment explanation
Indices: 403676--403704 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
403666 TATTTTGAGA
403676 TATT TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT TATT T
403705 GTTTTGTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:413554 original size:13 final size:13
Alignment explanation
Indices: 413536--413586 Score: 75
Period size: 14 Copynumber: 3.8 Consensus size: 13
413526 ATCTTCTTTT
413536 AAAAAAAAAAACA
1 AAAAAAAAAAACA
*
413549 AAAAAACAAAACA
1 AAAAAAAAAAACA
413562 AAGAAAAAAAAAGCA
1 AA-AAAAAAAAA-CA
413577 AAAAAAAAAA
1 AAAAAAAAAA
413587 GAAAAGAACC
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
13 14 0.41
14 16 0.47
15 4 0.12
ACGTcount: A:0.88, C:0.08, G:0.04, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAACA
Found at i:413568 original size:23 final size:22
Alignment explanation
Indices: 413540--413591 Score: 59
Period size: 25 Copynumber: 2.2 Consensus size: 22
413530 TCTTTTAAAA
*
413540 AAAAAAACAAAAAAACAAAACAAAG
1 AAAAAAA-AACAAAA-AAAA-AAAG
413565 AAAAAAAAAGCAAAAAAAAAAAG
1 AAAAAAAAA-CAAAAAAAAAAAG
413588 AAAA
1 AAAA
413592 GAACCTGCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
23 8 0.32
24 6 0.24
25 11 0.44
ACGTcount: A:0.87, C:0.08, G:0.06, T:0.00
Consensus pattern (22 bp):
AAAAAAAAACAAAAAAAAAAAG
Found at i:413587 original size:13 final size:12
Alignment explanation
Indices: 413536--413591 Score: 67
Period size: 13 Copynumber: 4.3 Consensus size: 12
413526 ATCTTCTTTT
413536 AAAAAAAAAAAC
1 AAAAAAAAAAAC
413548 AAAAAAACAAAAC
1 AAAAAAA-AAAAC
413561 AAAGAAAAAAAAAGC
1 -AA-AAAAAAAAA-C
*
413576 AAAAAAAAAAAG
1 AAAAAAAAAAAC
413588 AAAA
1 AAAA
413592 GAACCTGCTT
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
12 11 0.28
13 14 0.36
14 8 0.21
15 6 0.15
ACGTcount: A:0.88, C:0.07, G:0.05, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAAC
Found at i:413592 original size:28 final size:28
Alignment explanation
Indices: 413537--413594 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
413527 TCTTCTTTTA
*
413537 AAAAAAAAAACAAAAAAACAAAACAAAG
1 AAAAAAAAAACAAAAAAACAAAAAAAAG
*
413565 AAAAAAAAAGCAAAAAAA-AAAAGAAAAG
1 AAAAAAAAAACAAAAAAACAAAA-AAAAG
413593 AA
1 AA
413595 CCTGCTTGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 4 0.15
28 23 0.85
ACGTcount: A:0.86, C:0.07, G:0.07, T:0.00
Consensus pattern (28 bp):
AAAAAAAAAACAAAAAAACAAAAAAAAG
Found at i:414753 original size:58 final size:55
Alignment explanation
Indices: 414563--414779 Score: 328
Period size: 54 Copynumber: 3.9 Consensus size: 55
414553 TTCACTTCTT
*
414563 AGTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC
* * *
414618 AGTCCTCAAAGAGTAGGACGCCTTT-AAAGCCCACACAAGTTGGTGGCACCCTTC
1 AGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC
* ** *
414672 AGTCCTTAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTTTTT
1 AGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCA---CCTTTC
414730 AGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCAC
1 AGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCAC
414780 TTCCCATCCC
Statistics
Matches: 146, Mismatches: 12, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
54 50 0.34
55 46 0.32
58 50 0.34
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (55 bp):
AGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC
Found at i:414915 original size:100 final size:95
Alignment explanation
Indices: 414725--414903 Score: 238
Period size: 100 Copynumber: 1.8 Consensus size: 95
414715 GTGGCATTTT
*
414725 TTTTTAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCCATCCC
1 TTTTTAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGCGGCACTTCCCATCCC
414790 GCAAAGAGCAGGACACTCTCTCTTTTTGCC
66 GCAAAGAGCAGGACACTCTCTCTTTTTGCC
*
414820 TTTTT-GTCCTCAAAGAGCAGGATGCTTTCTCTTTGTAAAGCCCACACAAGTTGGCGGCACTAT-
1 TTTTTAGTCCTCAAAGAGCAGGATG----C-CTTT-CAAAGCCCACACAAGTTGGCGGCACT-TC
*
414883 CCAGT-CCTCAAAGAGCAGGAC
59 CCA-TCCCGCAAAGAGCAGGAC
414904 GCCTTTTCTT
Statistics
Matches: 73, Mismatches: 3, Indels: 11
0.84 0.03 0.13
Matches are distributed among these distances:
94 19 0.26
95 5 0.07
98 1 0.01
99 4 0.05
100 42 0.58
101 2 0.03
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.26
Consensus pattern (95 bp):
TTTTTAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGCGGCACTTCCCATCCC
GCAAAGAGCAGGACACTCTCTCTTTTTGCC
Found at i:414921 original size:61 final size:60
Alignment explanation
Indices: 414825--414976 Score: 216
Period size: 61 Copynumber: 2.5 Consensus size: 60
414815 TTGCCTTTTT
414825 GTCCTCAAAGAGCAGGATG-CTTTCTCTTTGTAAAGCCCACACAAGTTGGCGGCACTATCCA
1 GTCCTCAAAGAGCAGGATGCCTTT-TCTTT-TAAAGCCCACACAAGTTGGCGGCACTATCCA
* * * * **
414886 GTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTA
1 GTCCTCAAAGAGCAGGATGCCTTTTCTTTT-AAAGCCCACACAAGTTGGCGGCACTATCCA
414947 GTCCTCAAAGAGCAGGATGCCTTTTCTTTT
1 GTCCTCAAAGAGCAGGATGCCTTTTCTTTT
414977 TCTCTTTTGT
Statistics
Matches: 82, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
60 1 0.01
61 77 0.94
62 4 0.05
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (60 bp):
GTCCTCAAAGAGCAGGATGCCTTTTCTTTTAAAGCCCACACAAGTTGGCGGCACTATCCA
Found at i:415066 original size:45 final size:45
Alignment explanation
Indices: 414974--415111 Score: 149
Period size: 42 Copynumber: 3.1 Consensus size: 45
414964 TGCCTTTTCT
* * * ** *
414974 TTTTCTCTTTTGTCCTTAAAGAGCAGGACACAC-TTCATTCCCTTC
1 TTTTCCCTTTTGTCCTAAAAGAGCAGGACGCACTTTGTTTTCC-TC
415019 TTTTCCCTTTTGTCCTAAAAGAGCAGGACGCACTTTGTTTTCCTC
1 TTTTCCCTTTTGTCCTAAAAGAGCAGGACGCACTTTGTTTTCCTC
* * * *
415064 -TTT--CTTTTGTCCTCAAAGAGTAGGACGCATTTTGTTTTCCTT
1 TTTTCCCTTTTGTCCTAAAAGAGCAGGACGCACTTTGTTTTCCTC
415106 TTTTCC
1 TTTTCC
415112 TTTATCCTCG
Statistics
Matches: 79, Mismatches: 10, Indels: 8
0.81 0.10 0.08
Matches are distributed among these distances:
42 35 0.44
43 3 0.04
44 3 0.04
45 32 0.41
46 6 0.08
ACGTcount: A:0.17, C:0.25, G:0.14, T:0.43
Consensus pattern (45 bp):
TTTTCCCTTTTGTCCTAAAAGAGCAGGACGCACTTTGTTTTCCTC
Found at i:415751 original size:21 final size:21
Alignment explanation
Indices: 415727--415782 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
415717 TTTTTGCCAA
*
415727 AATGAATCGATACATGCCCTT
1 AATGTATCGATACATGCCCTT
415748 AATGTATCGATACATGCCCTT
1 AATGTATCGATACATGCCCTT
*
415769 AATGTATCAATACA
1 AATGTATCGATACA
415783 AGGCCCCAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.30
Consensus pattern (21 bp):
AATGTATCGATACATGCCCTT
Found at i:415875 original size:20 final size:20
Alignment explanation
Indices: 415819--415975 Score: 112
Period size: 20 Copynumber: 7.8 Consensus size: 20
415809 TTTTCACAAT
*
415819 TTGTATCGATACATTGCTCA
1 TTGTATCGATACATTGTTCA
415839 TTGTATCGATACATTGTTCA
1 TTGTATCGATACATTGTTCA
*
415859 TTGTATCCATACATTG-T-A
1 TTGTATCGATACATTGTTCA
* * *
415877 TCG-ATAC-ATTC-TGGGTTTACCTA
1 TTGTAT-CGATACAT-TG-TT--C-A
*
415900 GATGTATCGATACATT-TTGCA
1 -TTGTATCGATACATTGTT-CA
*
415921 TTGTATCGATACATTGCTCA
1 TTGTATCGATACATTGTTCA
415941 TTGTATCGATACATT-TTACA
1 TTGTATCGATACATTGTT-CA
*
415961 ATGTATCGATACATT
1 TTGTATCGATACATT
415976 CAGGCATTTT
Statistics
Matches: 109, Mismatches: 14, Indels: 28
0.72 0.09 0.19
Matches are distributed among these distances:
16 1 0.01
17 6 0.06
18 4 0.04
19 3 0.03
20 81 0.74
21 2 0.02
22 1 0.01
23 3 0.03
24 2 0.02
25 5 0.05
26 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.41
Consensus pattern (20 bp):
TTGTATCGATACATTGTTCA
Found at i:418484 original size:135 final size:135
Alignment explanation
Indices: 418239--418522 Score: 430
Period size: 135 Copynumber: 2.1 Consensus size: 135
418229 CATCTCGGGG
** *
418239 ATACTCCAACCCCATTATTTCCGAGGGGATACTCCAACTCCAGCTTTATATCTAAAGAGTGGATT
1 ATACTCCAACCCCGCTATTTCCGAGGGGATACTCCAACTCCAGCTTTATATCTAAAGAATGGATT
* *
418304 TTTCATGATCGGAGGTACTCCAACCCCGTTATGTCATCGAGGATACTCCAAT-CCGATTATTTTC
66 TTTCATAATCGGAGGTACTCCAACCCCGTTATGTCATCGAGGATACTCCAATCCCG-TTATTTCC
418368 GAGGGA
130 GAGGGA
* * *
418374 ATGCTCCAACCCCGCTATTTCCGAGGGGATACTCCAAC-CCTGGCTTTATATCTAAA-ATATTGA
1 ATACTCCAACCCCGCTATTTCCGAGGGGATACTCCAACTCC-AGCTTTATATCTAAAGA-ATGGA
*
418437 TTTTTCATAATCGGGGGTACTCCAACCCCGTTATGTCATCGAGGATACTCCAATCCCGTTATTTC
64 TTTTTCATAATCGGAGGTACTCCAACCCCGTTATGTCATCGAGGATACTCCAATCCCGTTATTTC
*
418502 CGAGGGG
129 CGAGGGA
418509 ATACTCCAACCCCG
1 ATACTCCAACCCCG
418523 ATTTTATTCC
Statistics
Matches: 135, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
134 3 0.02
135 129 0.96
136 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (135 bp):
ATACTCCAACCCCGCTATTTCCGAGGGGATACTCCAACTCCAGCTTTATATCTAAAGAATGGATT
TTTCATAATCGGAGGTACTCCAACCCCGTTATGTCATCGAGGATACTCCAATCCCGTTATTTCCG
AGGGA
Found at i:418486 original size:28 final size:27
Alignment explanation
Indices: 418454--418522 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 27
418444 TAATCGGGGG
418454 TACTCCAACCCCGTTATGTCATCGA-GGA
1 TACTCCAACCCCGTTATGTC--CGAGGGA
* *
418482 TACTCCAATCCCGTTATTTCCGAGGGGA
1 TACTCCAACCCCGTTATGTCCGA-GGGA
418510 TACTCCAACCCCG
1 TACTCCAACCCCG
418523 ATTTTATTCC
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
26 3 0.08
28 33 0.92
ACGTcount: A:0.23, C:0.35, G:0.17, T:0.25
Consensus pattern (27 bp):
TACTCCAACCCCGTTATGTCCGAGGGA
Found at i:418548 original size:107 final size:107
Alignment explanation
Indices: 418339--418598 Score: 255
Period size: 107 Copynumber: 2.4 Consensus size: 107
418329 CCGTTATGTC
* * *
418339 ATCGAGGATACTCCAA-TCCGATTAT-T-TTCGAGGGAATGCTCCAACCCCGCTATTTCCGAGGG
1 ATCGAGGATACTCCAACCCCG-TTATGTCATCGA-GG-ATACTCCAACCCCGCTATTTCCGAGGG
* * * * ** *
418401 GATACTCCAACCCTGGCTTTATATCTAAAATATTGATTTTTCATA
63 GATACTCCAACCCCGACTTTATATCCAAAACACAGATTTTTCACA
* * * *
418446 ATCGGGGGTACTCCAACCCCGTTATGTCATCGAGGATACTCCAATCCCGTTATTTCCGAGGGGAT
1 ATCGAGGATACTCCAACCCCGTTATGTCATCGAGGATACTCCAACCCCGCTATTTCCGAGGGGAT
*
418511 ACTCCAACCCCGATTTTAT-TCCCAAAACACCAG-TTTTTCACA
66 ACTCCAACCCCGACTTTATAT-CCAAAACA-CAGATTTTTCACA
* *
418553 ATCGAGGATACTCCAATCCCGTTATTTC-T-GAGGGGATACTCCAACC
1 ATCGAGGATACTCCAACCCCGTTATGTCATCGA--GGATACTCCAACC
418599 TCGATTTTAT
Statistics
Matches: 126, Mismatches: 20, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
105 2 0.02
106 2 0.02
107 111 0.88
108 7 0.06
109 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (107 bp):
ATCGAGGATACTCCAACCCCGTTATGTCATCGAGGATACTCCAACCCCGCTATTTCCGAGGGGAT
ACTCCAACCCCGACTTTATATCCAAAACACAGATTTTTCACA
Found at i:418647 original size:79 final size:79
Alignment explanation
Indices: 418474--418635 Score: 261
Period size: 79 Copynumber: 2.1 Consensus size: 79
418464 CCGTTATGTC
418474 ATCGAGGATACTCCAATCCCGTTATTTCCGAGGGGATACTCCAACCCCGATTTTATTCCCAAAAC
1 ATCGAGGATACTCCAATCCCGTTATTTCCGAGGGGATACTCCAACCCCGATTTTATTCCCAAAAC
* *
418539 ACCAGTTTTTCACA
66 ACCAATTTTCCACA
* * * * *
418553 ATCGAGGATACTCCAATCCCGTTATTTCTGAGGGGATACTCCAACCTCGATTTTATTTCTAAAAT
1 ATCGAGGATACTCCAATCCCGTTATTTCCGAGGGGATACTCCAACCCCGATTTTATTCCCAAAAC
418618 ACCAATTTTCCACA
66 ACCAATTTTCCACA
418632 ATCG
1 ATCG
418636 GAGATATTCC
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
79 76 1.00
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.30
Consensus pattern (79 bp):
ATCGAGGATACTCCAATCCCGTTATTTCCGAGGGGATACTCCAACCCCGATTTTATTCCCAAAAC
ACCAATTTTCCACA
Found at i:418658 original size:51 final size:51
Alignment explanation
Indices: 418587--418699 Score: 158
Period size: 51 Copynumber: 2.2 Consensus size: 51
418577 TTTCTGAGGG
* *
418587 GATACTCCAAC-CTCGATTTTATTTCTAAAATACCAATTT-TCCACAATCGGA
1 GATACTCCAACTC-CGGTTTTATTTCTAAAACACCAATTTCT-CACAATCGGA
* *
418638 GATATTCCAACTCCGGTTTTATTTCTAAAACACCAATTTCTCACAATCGGG
1 GATACTCCAACTCCGGTTTTATTTCTAAAACACCAATTTCTCACAATCGGA
418689 GATACTCCAAC
1 GATACTCCAAC
418700 CCCGTTATTT
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
51 53 0.96
52 2 0.04
ACGTcount: A:0.32, C:0.27, G:0.10, T:0.32
Consensus pattern (51 bp):
GATACTCCAACTCCGGTTTTATTTCTAAAACACCAATTTCTCACAATCGGA
Found at i:418819 original size:122 final size:123
Alignment explanation
Indices: 418508--418890 Score: 411
Period size: 122 Copynumber: 3.1 Consensus size: 123
418498 TTTCCGAGGG
* * * * * *
418508 GATACTCCAACCCCGATTTTATTCCCAAAACACCAGTTTTTCACAATC-GAGGATACTCCAATCC
1 GATACTCCAACTCCGATTTTATTTCTAAAACACCAATTTCTCACAATCAG-GGATACTCCAACCC
*
418572 CGTTATTTCTGAGGGGATACTCCAACCTCGATTTTATTTCTAAAATACCAATTTTCCACAATCG-
65 CGTTATTTCTGAGGGGATACTCCAACCCCGATTTTA----T----TACCAATTTTCCACAATCGA
418636 GA
122 GA
* * *
418638 GATATTCCAACTCCGGTTTTATTTCTAAAACACCAATTTCTCACAATCGGGGATACTCCAACCCC
1 GATACTCCAACTCCGATTTTATTTCTAAAACACCAATTTCTCACAATCAGGGATACTCCAACCCC
*
418703 GTTATTTCTGAGGGGATACTCCAACCCCGACTTTATTACCAATTTTCCACAATCGAG-
66 GTTATTTCTGAGGGGATACTCCAACCCCGATTTTATTACCAATTTTCCACAATCGAGA
* * * * *
418760 GATACTCCAACTCTGATTTTATTT-TCAAAATACCGATTT-TCTATAATTAGGGATACTCCAACC
1 GATACTCCAACTCCGATTTTATTTCT-AAAACACCAATTTCTC-ACAATCAGGGATACTCCAACC
* * * *
418823 CTGTTATTT-TCGAGGGGATACTCCAACCCCGATTTTTATTTCCTGATTTTCCATAATC-AGA
64 CCGTTATTTCT-GAGGGGATACTCCAACCCCGA-TTTTATTACC-AATTTTCCACAATCGAGA
418884 GATACTC
1 GATACTC
418891 TAGCCCCGTT
Statistics
Matches: 222, Mismatches: 23, Indels: 22
0.83 0.09 0.08
Matches are distributed among these distances:
121 4 0.02
122 98 0.44
123 11 0.05
124 19 0.09
126 1 0.00
130 88 0.40
131 1 0.00
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.33
Consensus pattern (123 bp):
GATACTCCAACTCCGATTTTATTTCTAAAACACCAATTTCTCACAATCAGGGATACTCCAACCCC
GTTATTTCTGAGGGGATACTCCAACCCCGATTTTATTACCAATTTTCCACAATCGAGA
Found at i:423038 original size:13 final size:13
Alignment explanation
Indices: 423020--423045 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
423010 TACAGCAAGT
423020 ATGTATCGATACA
1 ATGTATCGATACA
423033 ATGTATCGATACA
1 ATGTATCGATACA
423046 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:425295 original size:21 final size:21
Alignment explanation
Indices: 425262--425306 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
425252 TTGCAAGTTG
*
425262 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
425284 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
425304 AAA
1 AAA
425307 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:428221 original size:13 final size:13
Alignment explanation
Indices: 428203--428228 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
428193 TACAGCAAGT
428203 ATGTATCGATACA
1 ATGTATCGATACA
428216 ATGTATCGATACA
1 ATGTATCGATACA
428229 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:429089 original size:13 final size:13
Alignment explanation
Indices: 429071--429100 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
429061 ACTTTTTACT
429071 ATGTATCGATACA
1 ATGTATCGATACA
429084 ATGTATCGATACA
1 ATGTATCGATACA
429097 ATGT
1 ATGT
429101 CCCATGTATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:429108 original size:33 final size:33
Alignment explanation
Indices: 429048--429117 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
429038 GTCGTTGGGC
** * *
429048 ACAATGTATCGATACTTTTTACTATGTATCGAT
1 ACAATGTATCGATACAATGTACCATGTATCGAT
*
429081 ACAATGTATCGATACAATGTCCCATGTATCGAT
1 ACAATGTATCGATACAATGTACCATGTATCGAT
429114 ACAA
1 ACAA
429118 ATAGTGGTAG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.34
Consensus pattern (33 bp):
ACAATGTATCGATACAATGTACCATGTATCGAT
Found at i:429859 original size:23 final size:23
Alignment explanation
Indices: 429830--429911 Score: 91
Period size: 22 Copynumber: 3.7 Consensus size: 23
429820 AAATTATAAC
*
429830 TCCCCTTTAATTAAAAATTTTC-
1 TCCCCCTTAATTAAAAATTTTCT
*
429852 TCCCCCTTAATAAAAAATTTTCT
1 TCCCCCTTAATTAAAAATTTTCT
*
429875 TCCCCCTTAA-T-AAAATTTCTTT
1 TCCCCCTTAATTAAAAATTT-TCT
*
429897 TTCCCCTTAA-TAAAA
1 TCCCCCTTAATTAAAA
429912 TTTCTCCCTC
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
21 7 0.13
22 32 0.62
23 13 0.25
ACGTcount: A:0.33, C:0.26, G:0.00, T:0.41
Consensus pattern (23 bp):
TCCCCCTTAATTAAAAATTTTCT
Found at i:436006 original size:21 final size:21
Alignment explanation
Indices: 435980--436019 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
435970 TTCTTGGAAA
435980 CCATGATATGAGTATATTAAG
1 CCATGATATGAGTATATTAAG
436001 CCATGATATGAGTATATTA
1 CCATGATATGAGTATATTA
436020 CCAAGAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.35
Consensus pattern (21 bp):
CCATGATATGAGTATATTAAG
Found at i:439153 original size:15 final size:15
Alignment explanation
Indices: 439131--439168 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
439121 TTCTAGTTCG
*
439131 ACAATTTTCTTTTCA
1 ACAATTTTATTTTCA
*
439146 AGAATTTTATTTTCA
1 ACAATTTTATTTTCA
439161 ACAATTTT
1 ACAATTTT
439169 TTATTTATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.32, C:0.13, G:0.03, T:0.53
Consensus pattern (15 bp):
ACAATTTTATTTTCA
Found at i:441965 original size:34 final size:33
Alignment explanation
Indices: 441900--441966 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 33
441890 GCCAAGGGAA
*
441900 TGTATCGATACATTTTTCTGTGTATCAATACAT
1 TGTATCGATACATTATTCTGTGTATCAATACAT
* * *
441933 TGTATCGATAGATCTATTCTTTGTATCGATACAT
1 TGTATCGATACAT-TATTCTGTGTATCAATACAT
441967 CTAGGAAGTT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
33 12 0.41
34 17 0.59
ACGTcount: A:0.27, C:0.15, G:0.13, T:0.45
Consensus pattern (33 bp):
TGTATCGATACATTATTCTGTGTATCAATACAT
Found at i:444370 original size:51 final size:53
Alignment explanation
Indices: 444306--444436 Score: 178
Period size: 51 Copynumber: 2.5 Consensus size: 53
444296 AGTTTCTCAA
* * * *
444306 TTCTCCACAATCGGGGATATTCCAACTCCGATTTTATTTTC-AAAACACTAA-
1 TTCTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAT
*
444357 TT-TTCTATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAAACACCAAT
1 TTCTTC-ACAATCGGGGATACTCCAACTCCGATTTTATTTCC-AAAAACACCAAT
444411 TTCTTCACAATCGGGGATACTCCAAC
1 TTCTTCACAATCGGGGATACTCCAAC
444437 CCCGTTATTT
Statistics
Matches: 69, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
50 2 0.03
51 34 0.49
53 9 0.13
54 21 0.30
55 3 0.04
ACGTcount: A:0.31, C:0.26, G:0.11, T:0.32
Consensus pattern (53 bp):
TTCTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAT
Found at i:444511 original size:51 final size:51
Alignment explanation
Indices: 444451--444668 Score: 192
Period size: 52 Copynumber: 4.3 Consensus size: 51
444441 TTATTTTCGA
* * *** *
444451 GGGGATACTCCAACCCCGACTTTATTTCCAAAATATTGATTTTTCATAATC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATC
* * * *
444502 GGGGATACTCCAACCCCGGTTTTATTGCTAAAACACTAATTTTTCCACAATC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTT-CACAATC
* * * * **
444554 ----AGACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAATC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTC-ACAATC
* * * *
444602 GGGGATACTCCAACTCTGATTTTATTTCCAAAAATACCAATTCTTCACAATC
1 GGGGATACTCCAACCCCGATTTTATTTCC-AAAACACCAATTTTTCACAATC
*
444654 GAGGATACTCCAACC
1 GGGGATACTCCAACC
444669 TCGTTATTTC
Statistics
Matches: 132, Mismatches: 28, Indels: 13
0.76 0.16 0.08
Matches are distributed among these distances:
47 1 0.01
48 38 0.29
51 37 0.28
52 43 0.33
53 13 0.10
ACGTcount: A:0.30, C:0.27, G:0.11, T:0.32
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATC
Found at i:444527 original size:82 final size:81
Alignment explanation
Indices: 444369--444519 Score: 216
Period size: 82 Copynumber: 1.9 Consensus size: 81
444359 TTCTATAATC
* *
444369 GGGGATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATACTCC
1 GGGGATACTCCAACCCCGACTTTATTTCC-AAAAACACCAATTTCTTCACAATCGGGGATACTCC
444434 AACCCCGTTATTTTCGA
65 AACCCCGTTATTTTCGA
* *** *
444451 GGGGATACTCCAACCCCGACTTTATTTCC-AAAATATTGATTT-TTCATAATCGGGGATACTCCA
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAAACACCAATTTCTTCACAATCGGGGATACTCCA
444514 ACCCCG
66 ACCCCG
444520 GTTTTATTGC
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
79 26 0.42
80 9 0.15
82 27 0.44
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (81 bp):
GGGGATACTCCAACCCCGACTTTATTTCCAAAAACACCAATTTCTTCACAATCGGGGATACTCCA
ACCCCGTTATTTTCGA
Found at i:444688 original size:28 final size:28
Alignment explanation
Indices: 444656--444724 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
444646 TCACAATCGA
444656 GGATACTCCAACCTCGTTA-TTTC-ATCAG
1 GGATACTCCAACCTCGTTACTTTCGA--AG
* *
444684 GGATACTCCAACCTTGTTACTTTCGAGG
1 GGATACTCCAACCTCGTTACTTTCGAAG
444712 GGATACTCCAACC
1 GGATACTCCAACC
444725 CCGGCTTTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
28 32 0.86
29 4 0.11
30 1 0.03
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (28 bp):
GGATACTCCAACCTCGTTACTTTCGAAG
Found at i:448854 original size:52 final size:52
Alignment explanation
Indices: 448798--448899 Score: 136
Period size: 53 Copynumber: 2.0 Consensus size: 52
448788 GATGGGGTTA
*
448798 AAGTAT-CCCAAAAATGTAAATTTAAGATTTATTTGCAAGAAAAACG-GGATTG
1 AAGTATCCCCAAAAATGTAAATTCAAGA-TT-TTTGCAAGAAAAACGAGGATTG
* * *
448850 AAGTATCCCCGAGAATGTAAATTCAAGATTTTTGTAAGAAAAACGAGGAT
1 AAGTATCCCCAAAAATGTAAATTCAAGATTTTTGCAAGAAAAACGAGGAT
448900 GGAGTATTCC
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
51 14 0.32
52 12 0.27
53 18 0.41
ACGTcount: A:0.43, C:0.11, G:0.19, T:0.27
Consensus pattern (52 bp):
AAGTATCCCCAAAAATGTAAATTCAAGATTTTTGCAAGAAAAACGAGGATTG
Found at i:449135 original size:131 final size:131
Alignment explanation
Indices: 448951--449215 Score: 347
Period size: 131 Copynumber: 2.0 Consensus size: 131
448941 AAATGATAAC
* * * *
448951 TTTGGTGTTTTAAGCAAGTACTTAGGAACCTCAAATAAATCCAGGAAAGAAAATATGAGTTTCTA
1 TTTGATGTTTTAAGCAAGTAATTAGGAACCTCAAATAAATCCAGAAAAAAAAATATGAGTTTCTA
* * * * * * *
449016 GTGGCAAATAAGGTTGGAGTATCCCTTTAGAGTGGTGAGGTTGGAGTATCCCCTAAG-GATG-AA
66 GTAGAAAACAAGGTTGGAGTATCCCTTCAAAGTGGTGAGGTTAGAATA-CCCCTAAGAG-TGAAA
449079 AAT
129 AAT
* *
449082 TTTGATGTTTTAAGCAAGTAATTAGGAACCT-AGAATGAATCTAGAAAAAAAAATATGAGTTTCT
1 TTTGATGTTTTAAGCAAGTAATTAGGAACCTCA-AATAAATCCAGAAAAAAAAATATGAGTTTCT
* *
449146 AGTAGAAAACAAGGTTGGAGTATTCCTTCAAAGTGGTGGGGTTAGAATACCCCTAAGAGTGAAAA
65 AGTAGAAAACAAGGTTGGAGTATCCCTTCAAAGTGGTGAGGTTAGAATACCCCTAAGAGTGAAAA
449211 AT
130 AT
449213 TTT
1 TTT
449216 TATAATTTAG
Statistics
Matches: 116, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
130 11 0.09
131 105 0.91
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.29
Consensus pattern (131 bp):
TTTGATGTTTTAAGCAAGTAATTAGGAACCTCAAATAAATCCAGAAAAAAAAATATGAGTTTCTA
GTAGAAAACAAGGTTGGAGTATCCCTTCAAAGTGGTGAGGTTAGAATACCCCTAAGAGTGAAAAA
T
Found at i:449261 original size:16 final size:16
Alignment explanation
Indices: 449237--449273 Score: 53
Period size: 13 Copynumber: 2.5 Consensus size: 16
449227 AGAAAAAGGA
449237 TATTTATTA-TA-T-T
1 TATTTATTATTATTGT
449250 TATTTATTATTATTGT
1 TATTTATTATTATTGT
449266 TATTTATT
1 TATTTATT
449274 TTTTTATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 9 0.43
14 2 0.10
15 1 0.05
16 9 0.43
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (16 bp):
TATTTATTATTATTGT
Found at i:452354 original size:13 final size:13
Alignment explanation
Indices: 452333--452363 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
452323 CGATACATAG
*
452333 TACAATGTATCGA
1 TACATTGTATCGA
452346 TACATTGTATCGA
1 TACATTGTATCGA
452359 TACAT
1 TACAT
452364 GATGAATTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:452357 original size:33 final size:33
Alignment explanation
Indices: 452317--452384 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
452307 CTACCATTGT
452317 TTGTATCGATACAT-A-GTACAATGTATCGATACA
1 TTGTATCGATACATGATG-A-AATGTATCGATACA
*
452350 TTGTATCGATACATGATGAATTGTATCGATACA
1 TTGTATCGATACATGATGAAATGTATCGATACA
452383 TT
1 TT
452385 ACTTGTAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
33 29 0.91
34 2 0.06
35 1 0.03
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37
Consensus pattern (33 bp):
TTGTATCGATACATGATGAAATGTATCGATACA
Found at i:461033 original size:20 final size:19
Alignment explanation
Indices: 460987--461043 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
460977 ATGTATCGAT
* *
460987 ACATTATATCGATACATGT
1 ACATTGTATCGATACATGG
*
461006 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATGG
461025 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
461044 AAATTGGCAG
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
19 17 0.52
20 16 0.48
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:461116 original size:32 final size:33
Alignment explanation
Indices: 461072--461139 Score: 104
Period size: 32 Copynumber: 2.1 Consensus size: 33
461062 CTACCACTGT
*
461072 TTGTATCGATACATGGTACAA-TGTATCGATACA
1 TTGTATCGATACATGATA-AATTGTATCGATACA
461105 TTGTAT-GATACATGATAAATTGTATCGATACA
1 TTGTATCGATACATGATAAATTGTATCGATACA
461137 TTG
1 TTG
461140 CTTGTAATGG
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
31 2 0.06
32 25 0.76
33 6 0.18
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.37
Consensus pattern (33 bp):
TTGTATCGATACATGATAAATTGTATCGATACA
Found at i:461126 original size:19 final size:20
Alignment explanation
Indices: 461099--461137 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
461089 ACAATGTATC
*
461099 GATACATTGTAT-GATACAT
1 GATAAATTGTATCGATACAT
461118 GATAAATTGTATCGATACAT
1 GATAAATTGTATCGATACAT
461138 TGCTTGTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.36
Consensus pattern (20 bp):
GATAAATTGTATCGATACAT
Found at i:469326 original size:51 final size:51
Alignment explanation
Indices: 469271--469371 Score: 184
Period size: 51 Copynumber: 2.0 Consensus size: 51
469261 AAAAGTTGGT
*
469271 AAAATTTGACACATGACATGCACCTATTGGCTTGGACACATCATACTCTTA
1 AAAATTTGACACATGAAATGCACCTATTGGCTTGGACACATCATACTCTTA
*
469322 AAAATTTGACACATGAAATGCACTTATTGGCTTGGACACATCATACTCTT
1 AAAATTTGACACATGAAATGCACCTATTGGCTTGGACACATCATACTCTT
469372 GATCAACATG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.31
Consensus pattern (51 bp):
AAAATTTGACACATGAAATGCACCTATTGGCTTGGACACATCATACTCTTA
Found at i:471199 original size:44 final size:44
Alignment explanation
Indices: 471136--471226 Score: 173
Period size: 44 Copynumber: 2.1 Consensus size: 44
471126 GGCCTCTGCG
*
471136 TATCTGATATCTACCATGTCAGACATTCGCACAACAAATAACAT
1 TATCTGATATCTACCATGTCAGACATACGCACAACAAATAACAT
471180 TATCTGATATCTACCATGTCAGACATACGCACAACAAATAACAT
1 TATCTGATATCTACCATGTCAGACATACGCACAACAAATAACAT
471224 TAT
1 TAT
471227 GATACACTAA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.40, C:0.24, G:0.09, T:0.27
Consensus pattern (44 bp):
TATCTGATATCTACCATGTCAGACATACGCACAACAAATAACAT
Found at i:478712 original size:14 final size:14
Alignment explanation
Indices: 478690--478730 Score: 73
Period size: 14 Copynumber: 2.9 Consensus size: 14
478680 AGATCAAACA
*
478690 AGTAAATGATTAAT
1 AGTATATGATTAAT
478704 AGTATATGATTAAT
1 AGTATATGATTAAT
478718 AGTATATGATTAA
1 AGTATATGATTAA
478731 ACATGTTAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.46, C:0.00, G:0.15, T:0.39
Consensus pattern (14 bp):
AGTATATGATTAAT
Found at i:479183 original size:266 final size:266
Alignment explanation
Indices: 478709--479385 Score: 1180
Period size: 266 Copynumber: 2.6 Consensus size: 266
478699 TTAATAGTAT
* * * * *
478709 ATGATTAATAGTATATGATTAAACATGTTAAGTGGTGTTATCCCACATCTATTAAACATTGTGTT
1 ATGATTAATAGAATATGATCAGACATGTTAAGTGGTGTTATCCCGCATCTATTAAATATTGTGTT
*
478774 TCCTACTTAACAGATGTGGGGTAATACCATTTTAACACTCTCCCTCACATGTAGCTCAACAAGGA
66 CCCTACTTAACAGATGTGGGGTAATACCATTTTAACACTCTCCCTCACATGTAGCTCAACAAGGA
478839 CCTACATGTGACAGGGAAAGTCTCATCTAAAAAGAAAAGTGGATTATTTCTCTTCTCTAGTTTTA
131 CCTACATGTGACAGGGAAAGTCTCATCTAAAAAGAAAAGTGGATTATTTCTCTTCTCTAGTTTTA
*
478904 AGAAACAATAACAAAACCAAACAAAAAAAAGAAACAGAGAACAAAAGAAAGAAATAGGATCAAAC
196 AGAAACAATAACAAAACCAAACAAAAAAAAGAAACAGAGAACAAAAGAAAGAAATAAGATCAAAC
478969 AAGTTA
261 AAGTTA
478975 ATGATTAATAGAATATGATCAGACATGTTAAGTGGTGTTATCCCGCATCTATTAAATATTGTGTT
1 ATGATTAATAGAATATGATCAGACATGTTAAGTGGTGTTATCCCGCATCTATTAAATATTGTGTT
*
479040 CCCTACTTAACAAATGTGGGGTAATACCATTTTAACACTCTCCCTCACATGTAGCTCAACAAGGA
66 CCCTACTTAACAGATGTGGGGTAATACCATTTTAACACTCTCCCTCACATGTAGCTCAACAAGGA
479105 CCTACATGTGACAGGGAAAGTCTCATCTAAAAAGAAAAGTGGATTATTTCTCTTCTCTAGTTTTA
131 CCTACATGTGACAGGGAAAGTCTCATCTAAAAAGAAAAGTGGATTATTTCTCTTCTCTAGTTTTA
*
479170 AGAAACAATAACAAAACCAAACAAACAAAAGAAACAGAGAACAAAAGAAAGAAATAAGATCAAAC
196 AGAAACAATAACAAAACCAAACAAAAAAAAGAAACAGAGAACAAAAGAAAGAAATAAGATCAAAC
479235 AAGTTA
261 AAGTTA
479241 ATGATTAATAGAATATGATCAGACATGTTAAGTGGTGTTATCCCGCATCTATTAAATATTGTGTT
1 ATGATTAATAGAATATGATCAGACATGTTAAGTGGTGTTATCCCGCATCTATTAAATATTGTGTT
* * * * *
479306 CCCTACTTAACAGATGTAGGATAATACCACTTTAACACT-TCCC-CTCATGTAGCTCAAGAATGG
66 CCCTACTTAACAGATGTGGGGTAATACCATTTTAACACTCTCCCTCACATGTAGCTCAACAA-GG
* *
479369 -CCAACATGTGAAAGGGA
130 ACCTACATGTGACAGGGA
479386 GTGATAAAGT
Statistics
Matches: 393, Mismatches: 17, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
264 30 0.08
265 6 0.02
266 357 0.91
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.27
Consensus pattern (266 bp):
ATGATTAATAGAATATGATCAGACATGTTAAGTGGTGTTATCCCGCATCTATTAAATATTGTGTT
CCCTACTTAACAGATGTGGGGTAATACCATTTTAACACTCTCCCTCACATGTAGCTCAACAAGGA
CCTACATGTGACAGGGAAAGTCTCATCTAAAAAGAAAAGTGGATTATTTCTCTTCTCTAGTTTTA
AGAAACAATAACAAAACCAAACAAAAAAAAGAAACAGAGAACAAAAGAAAGAAATAAGATCAAAC
AAGTTA
Found at i:479212 original size:20 final size:19
Alignment explanation
Indices: 479189--479236 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
479179 AACAAAACCA
479189 AACAAACAAAAGAAACAGAG
1 AACAAACAAAAGAAACA-AG
*
479209 AACAAA-AGAAAGAAATAAG
1 AACAAACA-AAAGAAACAAG
*
479228 ATCAAACAA
1 AACAAACAA
479237 GTTAATGATT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
19 9 0.38
20 15 0.62
ACGTcount: A:0.71, C:0.12, G:0.12, T:0.04
Consensus pattern (19 bp):
AACAAACAAAAGAAACAAG
Found at i:490983 original size:18 final size:18
Alignment explanation
Indices: 490960--490994 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
490950 TACATTTATC
490960 TTGTAAACTATTTCATTA
1 TTGTAAACTATTTCATTA
*
490978 TTGTAAATTATTTCATT
1 TTGTAAACTATTTCATT
490995 TGCATTAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.09, G:0.06, T:0.54
Consensus pattern (18 bp):
TTGTAAACTATTTCATTA
Found at i:494115 original size:33 final size:33
Alignment explanation
Indices: 494078--494144 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
494068 TTCAACGATT
494078 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
494111 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
494144 T
1 T
494145 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:494116 original size:13 final size:13
Alignment explanation
Indices: 494098--494122 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
494088 CATAAAATGT
494098 TGTATCGATACAA
1 TGTATCGATACAA
494111 TGTATCGATACA
1 TGTATCGATACA
494123 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:494348 original size:52 final size:52
Alignment explanation
Indices: 494220--494339 Score: 222
Period size: 52 Copynumber: 2.3 Consensus size: 52
494210 GACGGATCTT
*
494220 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
494272 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
494324 TGTATCGATACATGCA
1 TGTATCGATACATGCA
494340 AATAAATTTT
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 66 1.00
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:494466 original size:71 final size:70
Alignment explanation
Indices: 494346--494662 Score: 378
Period size: 71 Copynumber: 4.5 Consensus size: 70
494336 TGCAAATAAA
* * *
494346 TTTT-CTTTTAAAGCCCACAACTCTGTGGCACACTTTTTCTTTTTAAAGCCCACAACTCTGTGGC
1 TTTTCCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTTTTTAAAGCCCACAACTCCGTGGC
494410 ACTCT
66 ACTCT
494415 TTTTCCCTTTTCAAAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTTAAAGCCCACAACTCCGTG
1 TTTT-CCTTTT-AAAGCCCACAACTCCGTGGCACTCTTTTTCTTTTTAAAGCCCACAACTCCGTG
*
494479 GCACTTT
64 GCACTCT
* * *
494486 TTTTCCCTTTTTAAAGCCCACAACTCCGTGGCACTTTCTTTTCCTTCT-AAGCCCACAACTCCGT
1 TTTT-CC-TTTTAAAGCCCACAACTCCGTGGCACTCT-TTTTCTTTTTAAAGCCCACAACTCCGT
494550 GGCACTCT
63 GGCACTCT
* * * *
494558 TTTTCCTTCT-AAGCCCACAACACCGTGGCAATCTTTTTTTCCTTTTTAAAGCCCACAACTCTGT
1 TTTTCCTTTTAAAGCCCACAACTCCGTGGC-A-CTCTTTTT-CTTTTTAAAGCCCACAACTCCGT
494622 GGCAC-CT
63 GGCACTCT
* * * *
494629 TGTT-CTTTTTAAGTCCACAACTTCGTGGCA-TCTT
1 TTTTCCTTTTAAAGCCCACAACTCCGTGGCACTCTT
494663 CCACCCTTTC
Statistics
Matches: 219, Mismatches: 18, Indels: 23
0.84 0.07 0.09
Matches are distributed among these distances:
68 3 0.01
69 22 0.10
70 13 0.06
71 100 0.46
72 73 0.33
73 8 0.04
ACGTcount: A:0.20, C:0.32, G:0.12, T:0.37
Consensus pattern (70 bp):
TTTTCCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTTTTTAAAGCCCACAACTCCGTGGC
ACTCT
Found at i:494538 original size:106 final size:106
Alignment explanation
Indices: 494346--494626 Score: 392
Period size: 106 Copynumber: 2.6 Consensus size: 106
494336 TGCAAATAAA
* **
494346 TTTTCTTTTAAAGCCCACAACTCTGTGGCACACTTTTT-CTTTTTAAAGCCCACAACTCTGTGGC
1 TTTTCTTTTAAAGCCCACAACTCCGTGGCACTTTTTTTCCTTTTTAAAGCCCACAACTCTGTGGC
494410 ACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCAC-CT
66 ACTCTTTTTCCC-TTTCAAAGCCCACAACTCCGTGGCACTCT
*
494451 TTTTCTTTTTAAAGCCCACAACTCCGTGGCACTTTTTTTCCCTTTTTAAAGCCCACAACTCCGTG
1 TTTTC-TTTTAAAGCCCACAACTCCGTGGCACTTTTTTT-CCTTTTTAAAGCCCACAACTCTGTG
* *
494516 GCACT-TTCTTTTCC-TTCTAAGCCCACAACTCCGTGGCACTCT
64 GCACTCTT-TTTCCCTTTCAAAGCCCACAACTCCGTGGCACTCT
* *
494558 TTTTCCTTCT-AAGCCCACAACACCGTGGCAATCTTTTTTTCCTTTTTAAAGCCCACAACTCTGT
1 TTTT-CTTTTAAAGCCCACAACTCCGTGGC-A-CTTTTTTTCCTTTTTAAAGCCCACAACTCTGT
494622 GGCAC
63 GGCAC
494627 CTTGTTCTTT
Statistics
Matches: 159, Mismatches: 9, Indels: 14
0.87 0.05 0.08
Matches are distributed among these distances:
105 5 0.03
106 72 0.45
107 40 0.25
108 42 0.26
ACGTcount: A:0.20, C:0.33, G:0.11, T:0.36
Consensus pattern (106 bp):
TTTTCTTTTAAAGCCCACAACTCCGTGGCACTTTTTTTCCTTTTTAAAGCCCACAACTCTGTGGC
ACTCTTTTTCCCTTTCAAAGCCCACAACTCCGTGGCACTCT
Found at i:494742 original size:34 final size:34
Alignment explanation
Indices: 494665--494771 Score: 175
Period size: 33 Copynumber: 3.2 Consensus size: 34
494655 GGCATCTTCC
*
494665 ACCCTT-TCTAAAGCCCACACAAGTCGATGGCAA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAA
494698 A-CCTTCTCTAAAGCCCACACAAGTCGGTGGCAA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAA
*
494731 ACCCTTCTCTAAAGCCCACACAAGTCAGTGGC-A
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAA
494764 ACCCTTCT
1 ACCCTTCT
494772 AAGCCCAATA
Statistics
Matches: 70, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
32 4 0.06
33 37 0.53
34 29 0.41
ACGTcount: A:0.30, C:0.36, G:0.15, T:0.20
Consensus pattern (34 bp):
ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAA
Found at i:494835 original size:49 final size:49
Alignment explanation
Indices: 494771--495866 Score: 1415
Period size: 49 Copynumber: 22.9 Consensus size: 49
494761 GCAACCCTTC
* * *
494771 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* * *
494820 TAAGACCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* *
494869 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
*
494918 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA-C-----CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* * *
494961 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
*
495010 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA-C-----CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* *
495053 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* *
495102 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* * *
495151 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGTCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* *
495200 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* *
495249 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
*
495298 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA-C-----CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* *
495341 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
*
495390 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
*
495439 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* *
495488 TAAGTCCAATGTAGCTGGCCTTGACTCAACACATTGG---C---ATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* * * *
495531 TAAGTCCAATATAGCTGGTCTTGAATCAGTATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* * * * *
495580 TAAGACCAATGTAGCTGGCCTTGACTCAGCACATTGGCCCCTTCACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* * * * * *
495629 TAAGCCCGATATCGCTGGCCTTGAATCAGCATATTGGCATCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
*
495678 TAAGTCCAATGTAGCTGGGCTTGAATCAGCACATTGGCA-C-----CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* * * * * *
495721 TAAGCCCGATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* * *
495770 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TTT--ATCTT
* * *
495822 TAAGTTCAATGTAGCTGGCTTTGAATCAGCACATTGACATCCTTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CCTTT
495867 TTCATCATCT
Statistics
Matches: 910, Mismatches: 103, Indels: 65
0.84 0.10 0.06
Matches are distributed among these distances:
43 188 0.21
44 4 0.00
46 2 0.00
48 4 0.00
49 667 0.73
50 3 0.00
52 40 0.04
53 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (49 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
Found at i:494988 original size:92 final size:92
Alignment explanation
Indices: 494866--495813 Score: 1464
Period size: 92 Copynumber: 10.0 Consensus size: 92
494856 GCACCTTCAT
494866 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTA
494931 GCTGGCCTTGACTCAGCACATTGGCAC
66 GCTGGCCTTGACTCAGCACATTGGCAC
*
494958 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTA
495023 GCTGGCCTTGACTCAGCACATTGGCAC
66 GCTGGCCTTGACTCAGCACATTGGCAC
495050 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTA
495115 GCTGGCCTTGACTCAGCACATTGGCACCTTC
66 GCTGGCCTTGACTCAGCACATTGGCA----C
*
495146 ATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGTCACCTTTATCTTTAAGTCCAATG
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATG
495211 TAGCTGGCCTTGACTCAGCACATTGGCACCTTC
64 TAGCTGGCCTTGACTCAGCACATTGGCA----C
495244 ATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATG
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATG
495309 TAGCTGGCCTTGACTCAGCACATTGGCAC
64 TAGCTGGCCTTGACTCAGCACATTGGCAC
495338 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTA
495403 GCTGGCCTTGACTCAGCACATTGGCACC
66 GCTGGCCTTGACTCAGCACATTGGCA-C
* * *
495431 TTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCA
1 -----CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCA
* *
495496 ATGTAGCTGGCCTTGACTCAACACATTGGCAT
61 ATGTAGCTGGCCTTGACTCAGCACATTGGCAC
* * *
495528 CTTTAAGTCCAATATAGCTGGTCTTGAATCAGTATATTGGCACCTTTATCTTTAAGACCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTA
495593 GCTGGCCTTGACTCAGCACATTGGCCCCTTCAC
66 GCTGGCCTTGACTCAGCACATTGG------CAC
* * * *
495626 CTTTAAGCCCGATATCGCTGGCCTTGAATCAGCATATTGGCATCTTTATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTA
* *
495691 GCTGGGCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGACTCAGCACATTGGCAC
* * * * *
495718 CTTTAAGCCCGATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCTTTAAGTCCAATATA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTA
* * *
495783 GCTGGCCTTGAATCAGCATATCGGCAC
66 GCTGGCCTTGACTCAGCACATTGGCAC
495810 CTTT
1 CTTT
495814 TCCATCTTTA
Statistics
Matches: 806, Mismatches: 32, Indels: 36
0.92 0.04 0.04
Matches are distributed among these distances:
92 447 0.55
93 1 0.00
94 1 0.00
96 1 0.00
98 356 0.44
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.32
Consensus pattern (92 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTA
GCTGGCCTTGACTCAGCACATTGGCAC
Found at i:495154 original size:190 final size:186
Alignment explanation
Indices: 494766--495811 Score: 1628
Period size: 190 Copynumber: 5.5 Consensus size: 186
494756 CAGTGGCAAC
* *
494766 CCTTCTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATG
1 CCTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATG
494831 TAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATC
65 TAGCTGGCCTTGACTCAGCACATTGGCA-C--C-TCTTTAAGTCCAATATAGCTGGCCTTGAATC
494896 AGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA
126 AGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA
*
494957 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
495022 AGCTGGCCTTGACTCAGCACATTGGCA-C-CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
66 AGCTGGCCTTGACTCAGCACATTGGCACCTCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
495085 ATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA
131 ATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA
*
495141 CCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGTCACCTTTATCTTTAAGTC
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTC
495206 CAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTT
60 CAATGTAGCTGGCCTTGACTCAGCACATTGGCA-C--C-TCTTTAAGTCCAATATAGCTGGCCTT
495271 GAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGC
121 GAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGC
495336 A
186 A
495337 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
*
495402 AGCTGGCCTTGACTCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCA
66 AGCTGGCCTTGACTCAGCACATTGGCACC----TCTTTAAGTCCAATATAGCTGGCCTTGAATCA
* * *
495467 GCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAACACATTGGCA
127 GCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA
* * * *
495527 TCTTTAAGTCCAATATAGCTGGTCTTGAATCAGTATATTGGCACCTTTATCTTTAAGACCAATGT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
* * * *
495592 AGCTGGCCTTGACTCAGCACATTGGCCCCTTCACCTTTAAGCCCGATATCGCTGGCCTTGAATCA
66 AGCTGGCCTTGACTCAGCACATTGGCACC-T---CTTTAAGTCCAATATAGCTGGCCTTGAATCA
* * *
495657 GCATATTGGCATCTTTATCTTTAAGTCCAATGTAGCTGGGCTTGAATCAGCACATTGGCA
127 GCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA
* * * * *
495717 CCTTTAAGCCCGATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCTTTAAGTCCAATAT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
* * *
495782 AGCTGGCCTTGAATCAGCATATCGGCACCT
66 AGCTGGCCTTGACTCAGCACATTGGCACCT
495812 TTTCCATCTT
Statistics
Matches: 798, Mismatches: 39, Indels: 38
0.91 0.04 0.04
Matches are distributed among these distances:
184 91 0.11
186 1 0.00
187 2 0.00
188 1 0.00
189 2 0.00
190 604 0.76
191 4 0.01
192 1 0.00
194 1 0.00
196 91 0.11
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (186 bp):
CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
AGCTGGCCTTGACTCAGCACATTGGCACCTCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
ATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA
Found at i:495531 original size:380 final size:381
Alignment explanation
Indices: 494771--495857 Score: 1810
Period size: 380 Copynumber: 2.9 Consensus size: 381
494761 GCAACCCTTC
*
494771 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTAGCT
494836 GGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
66 GGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
494901 ATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTAAGT
131 ATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTAAGT
494966 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCT
196 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCT
* *
495031 TGACTCAGCACATTGGCA-C-----CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG
261 TGACTCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG
* *
495090 CACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
326 CACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAACACATTGG---C--CATCTT
* *
495151 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGTCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTAGCT
495216 GGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
66 GGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
495281 ATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTAAGT
131 ATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTAAGT
*
495346 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCT
196 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCT
495411 TGACTCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG
261 TGACTCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG
495476 CACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAACACATTGG-CATCTT
326 CACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAACACATTGGCCATCTT
* *
495531 TAAGTCCAATATAGCTGGTCTTGAATCAGTATATTGGCACCTTTATCTTTAAGACCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTAGCT
* * * * *
495596 GGCCTTGACTCAGCACATTGGCCCCTTCACCTTTAAGCCCGATATCGCTGGCCTTGAATCAGCAT
66 GGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
* * * *
495661 ATTGGCATCTTTATCTTTAAGTCCAATGTAGCTGGGCTTGAATCAGCACATTGGCACCTTTAAGC
131 ATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTAAGT
* * *
495726 CCGATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCTTTAAGTCCAATATAGCTGGCCT
196 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCT
* * * * *
495791 TGAATCAGCATATCGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCTTTGAATCAGCACAT
261 TGACTCAGCACATTGGCACC-TTT--ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
495856 TG
323 TG
495858 ACATCCTTTT
Statistics
Matches: 668, Mismatches: 30, Indels: 15
0.94 0.04 0.02
Matches are distributed among these distances:
380 540 0.81
381 4 0.01
383 39 0.06
386 85 0.13
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (381 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTAGCT
GGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
ATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTAAGT
CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCT
TGACTCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG
CACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAACACATTGGCCATCTT
Found at i:496805 original size:33 final size:33
Alignment explanation
Indices: 496768--496834 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
496758 TTCAACGATT
496768 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
496801 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
496834 T
1 T
496835 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:496806 original size:13 final size:13
Alignment explanation
Indices: 496788--496812 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
496778 CATAAAATGT
496788 TGTATCGATACAA
1 TGTATCGATACAA
496801 TGTATCGATACA
1 TGTATCGATACA
496813 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:497037 original size:52 final size:52
Alignment explanation
Indices: 496909--497029 Score: 215
Period size: 52 Copynumber: 2.3 Consensus size: 52
496899 GACGGATCTT
*
496909 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* *
496961 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATTGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
497013 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
497030 ATAAATTTTC
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 66 1.00
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:497073 original size:34 final size:34
Alignment explanation
Indices: 497035--497351 Score: 347
Period size: 35 Copynumber: 9.0 Consensus size: 34
497025 TGCAGATAAA
* *
497035 TTTTCTTTTAAAGCCCACAACTCTGTGGCACACT
1 TTTTCTTTTAAAGCCCACAACTCCGTGGCACTCT
* *
497069 TTTTCTTTTTAAAGCCCACAACTCTGTGACACTCT
1 TTTTC-TTTTAAAGCCCACAACTCCGTGGCACTCT
497104 TTTTCCCTTTTCAAAGCCCACAACTCCGTGGCAC-CT
1 TTTT--CTTTT-AAAGCCCACAACTCCGTGGCACTCT
*
497140 TTTTCTTTTTAAAGCCCACAACTCCGTGGCACTTT
1 TTTTC-TTTTAAAGCCCACAACTCCGTGGCACTCT
497175 TTTTCCCTTTTTAAAGCCCACAACTCCGTGGCACTTTCT
1 TTTT--C-TTTTAAAGCCCACAACTCCGTGGCAC--TCT
* *
497214 TTTCCTTCT-AAGCCCACAACTCCGTGGCACTCT
1 TTTTCTTTTAAAGCCCACAACTCCGTGGCACTCT
*
497247 TTTTCCTTCT-AAGCCCACAACTCCGTGGCACTCTTT
1 TTTT-CTTTTAAAGCCCACAACTCCGTGGCACTC--T
*
497283 TTTTCCTTTTTAAAGCCCACAACTCTGTGGCAC-CT
1 TTTT-C-TTTTAAAGCCCACAACTCCGTGGCACTCT
* * * *
497318 TGTTCTTTTTAAGTCCACAACTTCGTGGCA-TCT
1 TTTTCTTTTAAAGCCCACAACTCCGTGGCACTCT
497351 T
1 T
497352 CCACCCTTTC
Statistics
Matches: 251, Mismatches: 16, Indels: 33
0.84 0.05 0.11
Matches are distributed among these distances:
33 30 0.12
34 57 0.23
35 65 0.26
36 20 0.08
37 54 0.22
38 20 0.08
39 5 0.02
ACGTcount: A:0.20, C:0.32, G:0.11, T:0.37
Consensus pattern (34 bp):
TTTTCTTTTAAAGCCCACAACTCCGTGGCACTCT
Found at i:497155 original size:71 final size:72
Alignment explanation
Indices: 497039--497351 Score: 378
Period size: 71 Copynumber: 4.4 Consensus size: 72
497029 GATAAATTTT
* * * *
497039 CTTTT-AAAGCCCACAACTCTGTGGCACACTTTTTCTTTTTAAAGCCCACAACTCTGTGACACTC
1 CTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTC
497103 TTTTTCC
66 TTTTTCC
*
497110 CTTTTCAAAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTT
1 CTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTC
497174 TTTTTCC
66 TTTTTCC
* * * *
497181 CTTTTTAAAGCCCACAACTCCGTGGCACTTTCTTTTCCTTCT-AAGCCCACAACTCCGTGGCACT
1 CTTTTCAAAGCCCACAACTCCGTGGCACTCT-TTTTCTTTTTAAAGCCCACAACTCCGTGGCACT
497245 CTTTTT-C
65 CTTTTTCC
* *
497252 C--TTCTAAGCCCACAACTCCGTGGCACTCTTTTTTTCCTTTTTAAAGCCCACAACTCTGTGGCA
1 CTTTTCAAAGCCCACAACTCCGTGGCACTC--TTTTT-CTTTTTAAAGCCCACAACTCCGTGGCA
*
497315 C-CTTGTT--
63 CTCTTTTTCC
* * *
497322 CTTTT-TAAGTCCACAACTTCGTGGCA-TCTT
1 CTTTTCAAAGCCCACAACTCCGTGGCACTCTT
497352 CCACCCTTTC
Statistics
Matches: 215, Mismatches: 18, Indels: 21
0.85 0.07 0.08
Matches are distributed among these distances:
68 2 0.01
69 24 0.11
70 7 0.03
71 103 0.48
72 71 0.33
73 8 0.04
ACGTcount: A:0.20, C:0.33, G:0.12, T:0.36
Consensus pattern (72 bp):
CTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTC
TTTTTCC
Found at i:497227 original size:106 final size:106
Alignment explanation
Indices: 497035--497315 Score: 392
Period size: 106 Copynumber: 2.6 Consensus size: 106
497025 TGCAGATAAA
* ** *
497035 TTTTCTTTTAAAGCCCACAACTCTGTGGCACACTTTTT-CTTTTTAAAGCCCACAACTCTGTGAC
1 TTTTCTTTTAAAGCCCACAACTCCGTGGCACTTTTTTTCCTTTTTAAAGCCCACAACTCTGTGGC
497099 ACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCAC-CT
66 ACTCTTTTTCCC-TTTCAAAGCCCACAACTCCGTGGCACTCT
*
497140 TTTTCTTTTTAAAGCCCACAACTCCGTGGCACTTTTTTTCCCTTTTTAAAGCCCACAACTCCGTG
1 TTTTC-TTTTAAAGCCCACAACTCCGTGGCACTTTTTTT-CCTTTTTAAAGCCCACAACTCTGTG
* *
497205 GCACT-TTCTTTTCC-TTCTAAGCCCACAACTCCGTGGCACTCT
64 GCACTCTT-TTTCCCTTTCAAAGCCCACAACTCCGTGGCACTCT
*
497247 TTTTCCTTCT-AAGCCCACAACTCCGTGGCACTCTTTTTTTCCTTTTTAAAGCCCACAACTCTGT
1 TTTT-CTTTTAAAGCCCACAACTCCGTGGCA--CTTTTTTTCCTTTTTAAAGCCCACAACTCTGT
497311 GGCAC
63 GGCAC
497316 CTTGTTCTTT
Statistics
Matches: 159, Mismatches: 9, Indels: 14
0.87 0.05 0.08
Matches are distributed among these distances:
105 5 0.03
106 74 0.47
107 39 0.25
108 41 0.26
ACGTcount: A:0.20, C:0.33, G:0.11, T:0.36
Consensus pattern (106 bp):
TTTTCTTTTAAAGCCCACAACTCCGTGGCACTTTTTTTCCTTTTTAAAGCCCACAACTCTGTGGC
ACTCTTTTTCCCTTTCAAAGCCCACAACTCCGTGGCACTCT
Found at i:497431 original size:34 final size:34
Alignment explanation
Indices: 497354--497460 Score: 175
Period size: 33 Copynumber: 3.2 Consensus size: 34
497344 GGCATCTTCC
*
497354 ACCCTT-TCTAAAGCCCACACAAGTCGATGGCAA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAA
497387 A-CCTTCTCTAAAGCCCACACAAGTCGGTGGCAA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAA
*
497420 ACCCTTCTCTAAAGCCCACACAAGTCAGTGGC-A
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAA
497453 ACCCTTCT
1 ACCCTTCT
497461 AAGCCCAATA
Statistics
Matches: 70, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
32 4 0.06
33 37 0.53
34 29 0.41
ACGTcount: A:0.30, C:0.36, G:0.15, T:0.20
Consensus pattern (34 bp):
ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAA
Found at i:497524 original size:49 final size:49
Alignment explanation
Indices: 497460--498659 Score: 1584
Period size: 49 Copynumber: 24.9 Consensus size: 49
497450 GCAACCCTTC
* *
497460 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
* * * *
497509 TAAGACCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
* *
497558 TAAGTCCAATATAGCTAGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
* *
497607 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA-C-----CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
* * *
497650 TAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
* *
497699 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
*
497748 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
* * * *
497797 TAAGTCCAATGTAGCTGGCCTTGACTTAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
*
497846 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
* * * *
497895 TAGGTCCAATGTAGCTAGCCTTGACTCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
* *
497944 TAAGTCTAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
* * *
497993 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
*
498042 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
* *
498091 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA-C-----CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
* *
498134 TAAGTCAAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
* *
498183 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
* *
498232 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
* * *
498281 TAAGTCCAATGTAGCTGGCCTTGACTCAACACATTGG---C---ATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
* *
498324 TAAGTCCAATATAGCTGGTCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
* * * * * *
498373 TAAGACCAATGTAGCTGGCCTTGACTCAGCACATTGGCCCCTTCACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
* * * * * *
498422 TAAGCCCGATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
*
498471 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C-----CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
* * * * *
498514 TAAGCCCGATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
* *
498563 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACC-TTT--ATCTT
* * * *
498615 TAAGTTCAATGTAGCTGGCTTTGAATCAGCACATTGACATCCTTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCA-CCTTT
498660 TTCATCATCT
Statistics
Matches: 1007, Mismatches: 116, Indels: 53
0.86 0.10 0.05
Matches are distributed among these distances:
43 149 0.15
44 3 0.00
46 2 0.00
48 3 0.00
49 805 0.80
50 3 0.00
52 40 0.04
53 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.33
Consensus pattern (49 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
Found at i:497634 original size:98 final size:98
Alignment explanation
Indices: 497460--498659 Score: 1836
Period size: 98 Copynumber: 12.4 Consensus size: 98
497450 GCAACCCTTC
* *
497460 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
497525 GGCCTTGACTCAGCACATTGGCACCTTCATCTT
66 GGCCTTGACTCAGCACATTGGCACCTTCATCTT
*
497558 TAAGTCCAATATAGCTAGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
497623 GGCCTTGACTCAGCACATTGGCA----C--CTT
66 GGCCTTGACTCAGCACATTGGCACCTTCATCTT
* *
497650 TAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
*
497715 GGCCTTGACTCAGCACATTGGCACCTTTATCTT
66 GGCCTTGACTCAGCACATTGGCACCTTCATCTT
497748 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
*
497813 GGCCTTGACTTAGCACATTGGCACCTTCATCTT
66 GGCCTTGACTCAGCACATTGGCACCTTCATCTT
*
497846 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAGGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
* *
497911 AGCCTTGACTCAGCATATTGGCACCTTCATCTT
66 GGCCTTGACTCAGCACATTGGCACCTTCATCTT
*
497944 TAAGTCTAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
498009 GGCCTTGACTCAGCACATTGGCACCTTCATCTT
66 GGCCTTGACTCAGCACATTGGCACCTTCATCTT
498042 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
498107 GGCCTTGACTCAGCACATTGGCA----C--CTT
66 GGCCTTGACTCAGCACATTGGCACCTTCATCTT
*
498134 TAAGTCAAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
*
498199 GGCCTTGACTCAGCACATTGGCACCTTTATCTT
66 GGCCTTGACTCAGCACATTGGCACCTTCATCTT
* * *
498232 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
*
498297 GGCCTTGACTCAACACATTGG------CATCTT
66 GGCCTTGACTCAGCACATTGGCACCTTCATCTT
* *
498324 TAAGTCCAATATAGCTGGTCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
* *
498389 GGCCTTGACTCAGCACATTGGCCCCTTCACCTT
66 GGCCTTGACTCAGCACATTGGCACCTTCATCTT
* * * * *
498422 TAAGCCCGATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
*
498487 GGCCTTGAATCAGCACATTGGCA----C--CTT
66 GGCCTTGACTCAGCACATTGGCACCTTCATCTT
* * * * *
498514 TAAGCCCGATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCTTTAAGTCCAATATAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
* * *
498579 GGCCTTGAATCAGCATATCGGCACCTTTTCCATCTT
66 GGCCTTGACTCAGCACATTGGCACC--TT-CATCTT
* * * * *
498615 TAAGTTCAATGTAGCTGGCTTTGAATCAGCACATTGACATCCTTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CCTTT
498660 TTCATCATCT
Statistics
Matches: 1018, Mismatches: 56, Indels: 52
0.90 0.05 0.05
Matches are distributed among these distances:
92 350 0.34
94 3 0.00
98 625 0.61
99 1 0.00
101 34 0.03
102 5 0.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.33
Consensus pattern (98 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
GGCCTTGACTCAGCACATTGGCACCTTCATCTT
Found at i:497788 original size:190 final size:187
Alignment explanation
Indices: 497448--498603 Score: 1669
Period size: 190 Copynumber: 6.0 Consensus size: 187
497438 CACAAGTCAG
*
497448 TGGCAACCCTTCTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAG
1 TGGC-ACCCTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAG
* *
497513 ACCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATAGCTAGCC
64 TCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA----CATCTTTAAGTCCAATATAGCTGGCC
497578 TTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACAT
125 TTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACAT
* *
497641 TGGCA-CCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTC
1 TGGCACCCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTC
497705 CAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTATCTTTAAGTCCAATATAGCTGGCCTT
66 CAATGTAGCTGGCCTTGACTCAGCACATTGGCA-C---ATCTTTAAGTCCAATATAGCTGGCCTT
*
497770 GAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTTAGCACAT
127 GAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACAT
497831 TGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTT
1 TGGCA-C--C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTT
* * * *
497896 AGGTCCAATGTAGCTAGCCTTGACTCAGCATATTGGCACCTTCATCTTTAAGTCTAATATAGCTG
61 AAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA----CATCTTTAAGTCCAATATAGCTG
497961 GCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACA
122 GCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACA
498026 T
187 T
498027 TGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTT
1 TGGCA-C--C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTT
*
498092 AAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCAC--CTTTAAGTCAAATATAGCTGGCCT
61 AAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACATCTTTAAGTCCAATATAGCTGGCCT
498155 TGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACAT
126 TGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACAT
* * *
498217 TGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTT
1 TGGCACC-----CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTT
* *
498282 AAGTCCAATGTAGCTGGCCTTGACTCAACACATTGG--CATCTTTAAGTCCAATATAGCTGGTCT
61 AAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACATCTTTAAGTCCAATATAGCTGGCCT
*
498345 TGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTAGCTGGCCTTGACTCAGCACAT
126 TGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACAT
* * * * * *
498407 TGGCCCCTTCACCTTTAAGCCCGATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTT
1 TGG---C-AC-CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTT
* * * *
498472 AAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC--CTTTAAGCCCGATATCGCTGGCCT
61 AAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACATCTTTAAGTCCAATATAGCTGGCCT
* * * *
498535 TGAATCAGCATATTGGCACCTTTTTCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATAT
126 TGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACAT
*
498597 CGGCACC
1 TGGCACC
498604 TTTTCCATCT
Statistics
Matches: 893, Mismatches: 46, Indels: 56
0.90 0.05 0.06
Matches are distributed among these distances:
185 1 0.00
186 1 0.00
187 3 0.00
188 1 0.00
189 1 0.00
190 598 0.67
191 4 0.00
192 3 0.00
193 5 0.01
194 2 0.00
195 1 0.00
196 272 0.30
199 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.32
Consensus pattern (187 bp):
TGGCACCCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTC
CAATGTAGCTGGCCTTGACTCAGCACATTGGCACATCTTTAAGTCCAATATAGCTGGCCTTGAAT
CAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACAT
Found at i:499818 original size:52 final size:52
Alignment explanation
Indices: 499690--499810 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
499680 GACGGATCTT
*
499690 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
499742 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
499794 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
499811 ATAAATTTTC
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:506746 original size:7 final size:7
Alignment explanation
Indices: 506734--506775 Score: 68
Period size: 7 Copynumber: 6.1 Consensus size: 7
506724 AAAAGTAAAC
506734 ACAAAAA
1 ACAAAAA
506741 ACAAAAA
1 ACAAAAA
506748 A-AAAAA
1 ACAAAAA
506754 ACAAAAA
1 ACAAAAA
*
506761 ACAACAA
1 ACAAAAA
506768 ACAAAAA
1 ACAAAAA
506775 A
1 A
506776 AAAGTGTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
6 6 0.19
7 26 0.81
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (7 bp):
ACAAAAA
Found at i:506757 original size:20 final size:22
Alignment explanation
Indices: 506735--506776 Score: 70
Period size: 20 Copynumber: 2.0 Consensus size: 22
506725 AAAGTAAACA
506735 CAAAAAACAA-AAA-AAAAAAA
1 CAAAAAACAACAAACAAAAAAA
506755 CAAAAAACAACAAACAAAAAAA
1 CAAAAAACAACAAACAAAAAAA
506777 AAGTGTAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 10 0.50
21 3 0.15
22 7 0.35
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (22 bp):
CAAAAAACAACAAACAAAAAAA
Found at i:507047 original size:16 final size:16
Alignment explanation
Indices: 507016--507047 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
507006 TGTTCTTTTC
*
507016 CAAAAAAGAAACAAAA
1 CAAAAAAGAAAAAAAA
507032 CAAAAAAGAAAAAAAA
1 CAAAAAAGAAAAAAAA
507048 AGAGAGGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.84, C:0.09, G:0.06, T:0.00
Consensus pattern (16 bp):
CAAAAAAGAAAAAAAA
Found at i:508013 original size:31 final size:31
Alignment explanation
Indices: 507975--508119 Score: 206
Period size: 31 Copynumber: 4.7 Consensus size: 31
507965 ATACCTTTTT
507975 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
*
508006 AAAGTCCACGACTCAGTGGCAATCTCTGCTC
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
* *
508037 AAAGTCCACGACTCAGTGGC-ATCTTTTCCTTT
1 AAAGTCCACGACTCAGTGGCAATCTCTT-C-TC
*
508069 AAAGTCCACGACTCAGTGGC-AT-TTTGTCTC
1 AAAGTCCACGACTCAGTGGCAATCTCT-TCTC
508099 AAAGTCCACGACTCAGTGGCA
1 AAAGTCCACGACTCAGTGGCA
508120 TTTTTTCTTC
Statistics
Matches: 105, Mismatches: 5, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
30 26 0.25
31 55 0.52
32 24 0.23
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.26
Consensus pattern (31 bp):
AAAGTCCACGACTCAGTGGCAATCTCTTCTC
Found at i:508113 original size:93 final size:93
Alignment explanation
Indices: 507972--508191 Score: 275
Period size: 93 Copynumber: 2.3 Consensus size: 93
507962 CAAATACCTT
507972 TTTAAAGTCCACGACTCAGTGGCAATCTCTTCTCAAAGTCCACGACTCAGTGGCAATCTCTGC-T
1 TTTAAAGTCCACGACTCAGTGGC-ATCTCTTCTCAAAGTCCACGACTCAGTGGC-ATCTCTGCTT
* * *
508036 CAAAGTCCACGAC-TCAGTGGCATCTTTTCC
64 CAAAGCCCACAACTTC-GTGGCACCTTTTCC
* * * *
508066 TTTAAAGTCCACGACTCAGTGGCAT-TTTGTCTCAAAGTCCACGACTCAGTGGCATTTTTTCTTC
1 TTTAAAGTCCACGACTCAGTGGCATCTCT-TCTCAAAGTCCACGACTCAGTGGCATCTCTGCTTC
508130 AAAGCCCACAACTTCGTGGCACCTTTTCC
65 AAAGCCCACAACTTCGTGGCACCTTTTCC
* * * *
508159 TTTAAAGCCCACAACTCCGTGGCACCTTCTTCT
1 TTTAAAGTCCACGACTCAGTGGCATC-TCTTCT
508192 TTTCAAAGCC
Statistics
Matches: 109, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
92 7 0.06
93 72 0.66
94 28 0.26
95 2 0.02
ACGTcount: A:0.23, C:0.31, G:0.16, T:0.30
Consensus pattern (93 bp):
TTTAAAGTCCACGACTCAGTGGCATCTCTTCTCAAAGTCCACGACTCAGTGGCATCTCTGCTTCA
AAGCCCACAACTTCGTGGCACCTTTTCC
Found at i:508120 original size:62 final size:62
Alignment explanation
Indices: 507975--508138 Score: 226
Period size: 62 Copynumber: 2.6 Consensus size: 62
507965 ATACCTTTTT
*
507975 AAAGTCCACGACTCAGTGGCAATCTCTT-CTCAAAGTCCACGACTCAGTGGCAATCTCTGCTC
1 AAAGTCCACGACTCAGTGGC-ATCTTTTCCTCAAAGTCCACGACTCAGTGGCAATCTCTGCTC
* *
508037 AAAGTCCACGACTCAGTGGCATCTTTTCCTTTAAAGTCCACGACTCAGTGGC-AT-TTTGTCTC
1 AAAGTCCACGACTCAGTGGCATCTTTTCC-TCAAAGTCCACGACTCAGTGGCAATCTCTG-CTC
* * *
508099 AAAGTCCACGACTCAGTGGCATTTTTTCTTCAAAGCCCAC
1 AAAGTCCACGACTCAGTGGCATCTTTTCCTCAAAGTCCAC
508139 AACTTCGTGG
Statistics
Matches: 92, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
61 18 0.20
62 53 0.58
63 21 0.23
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (62 bp):
AAAGTCCACGACTCAGTGGCATCTTTTCCTCAAAGTCCACGACTCAGTGGCAATCTCTGCTC
Found at i:508339 original size:35 final size:34
Alignment explanation
Indices: 508130--508810 Score: 867
Period size: 34 Copynumber: 19.6 Consensus size: 34
508120 TTTTTTCTTC
* *
508130 AAAGCCCACAACTTCGTGGCACC-TTTTC-CTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
* *
508162 AAAGCCCACAACTCCGTGGCACCTTCTTCTTTTC
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
* *
508196 AAAGCCCACAACTCCGTGGCACTTTTTTCATCTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTC-TTTTT
*
508231 -AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
508264 AAAGCCCACAACTCCGTGGCACCTTTTTC-TTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
*
508297 AAAGCCCACAACTCTGTGGCACACTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTT
* *
508332 AAAGCCCACAACTACGTGGCACTCTTTTTCCCTTTTC
1 AAAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTT
508369 AAAGCCCACAACTCCGTGGCACCTTTTTC-TTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
*
508402 AAAGCCCACAACTCTGTGGCACACTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTT
*
508437 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTC
1 AAAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTT
*
508474 AAAGCCCACAACTCCGTGACACCTTTTTC-TTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
*
508507 AAAGCCCACAACTCTGTGGCACACTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTT
*
508542 AAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTT
1 AAAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTT
508579 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
*
508613 AAAGCCCACAACTCCGTGGCACTTTTTTTCCCTTTTT
1 AAAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTT
* * *
508650 AAAGCCCACAACTCCGTGGCACTTTCTTTTCCTTCT
1 AAAGCCCACAACTCCGTGGCAC-CT-TTTTCTTTTT
* *
508686 -AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCT
1 AAAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTT
508720 -AAGCCCACAACTCCGTGGCACTCTTTTTTTCCTTTTT
1 AAAGCCCACAACTCCGTGGCAC-C--TTTTT-CTTTTT
* *
508757 AAAGCCCACAACTCTGTGGCACCTTGTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
* *
508791 -AAGTCCACAACTTCGTGGCA
1 AAAGCCCACAACTCCGTGGCA
508811 TCTTCCACCC
Statistics
Matches: 585, Mismatches: 40, Indels: 47
0.87 0.06 0.07
Matches are distributed among these distances:
32 22 0.04
33 97 0.17
34 172 0.29
35 128 0.22
36 27 0.05
37 115 0.20
38 24 0.04
ACGTcount: A:0.21, C:0.33, G:0.12, T:0.35
Consensus pattern (34 bp):
AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
Found at i:508390 original size:105 final size:104
Alignment explanation
Indices: 508130--508810 Score: 922
Period size: 105 Copynumber: 6.5 Consensus size: 104
508120 TTTTTTCTTC
* *
508130 AAAGCCCACAACTTCGTGGCAC-C-TTTTCC-TTT-AAAGCCCACAACTCCGTGGCACCTTCTTC
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTC
* *
508191 TTTTCAAAGCCCACAACTCCGTGGCAC-TTTTTTCATCTTT
66 TTTT-AAAGCCCACAACTCCGTGGCACACTTTTTC-TTTTT
* *
508231 -AAGTCCACAACTCCGTGGCAC-CTTTTT-CTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTC
*
508293 TTTTAAAGCCCACAACTCTGTGGCACACTTTTTCTTTTT
66 TTTTAAAGCCCACAACTCCGTGGCACACTTTTTCTTTTT
*
508332 AAAGCCCACAACTACGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTT
1 AAAGCCCACAACTCCGTGGCACTCTTTTT-CCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTT
*
508397 CTTTTAAAGCCCACAACTCTGTGGCACACTTTTTCTTTTT
65 CTTTTAAAGCCCACAACTCCGTGGCACACTTTTTCTTTTT
*
508437 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGACACCTTTTT
1 AAAGCCCACAACTCCGTGGCACTCTTTTT-CCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTT
*
508502 CTTTTAAAGCCCACAACTCTGTGGCACACTTTTTCTTTTT
65 CTTTTAAAGCCCACAACTCCGTGGCACACTTTTTCTTTTT
* *
508542 AAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTT
1 AAAGCCCACAACTCCGTGGCACTCTTTTT-CCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTT
**
508607 CTTTTTAAAGCCCACAACTCCGTGGCACTTTTTTTCCCTTTTT
65 C-TTTTAAAGCCCACAACTCCGTGGCACACTTTTT--CTTTTT
* *
508650 AAAGCCCACAACTCCGTGGCACTTTCTTTTCC--TTCTAAGCCCACAACTCCGTGGCACTCTTTT
1 AAAGCCCACAACTCCGTGGCACTCT-TTTTCCTTTTCAAAGCCCACAACTCCGTGGCAC-CTTTT
* *
508713 TCCTTCT-AAGCCCACAACTCCGTGGCACTCTTTTTTTCCTTTTT
64 T-CTTTTAAAGCCCACAACTCCGTGGCACAC--TTTTT-CTTTTT
* * * * *
508757 AAAGCCCACAACTCTGTGGCAC-CTTGTT-CTTTT-TAAGTCCACAACTTCGTGGCA
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTCAAAGCCCACAACTCCGTGGCA
508811 TCTTCCACCC
Statistics
Matches: 534, Mismatches: 28, Indels: 32
0.90 0.05 0.05
Matches are distributed among these distances:
100 21 0.04
101 32 0.06
102 57 0.11
103 6 0.01
104 1 0.00
105 261 0.49
106 78 0.15
107 37 0.07
108 37 0.07
109 4 0.01
ACGTcount: A:0.21, C:0.33, G:0.12, T:0.35
Consensus pattern (104 bp):
AAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTC
TTTTAAAGCCCACAACTCCGTGGCACACTTTTTCTTTTT
Found at i:508894 original size:34 final size:34
Alignment explanation
Indices: 508817--508923 Score: 175
Period size: 33 Copynumber: 3.2 Consensus size: 34
508807 GGCATCTTCC
*
508817 ACCCTT-TCTAAAGCCCACACAAGTCGATGGCAA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAA
508850 A-CCTTCTCTAAAGCCCACACAAGTCGGTGGCAA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAA
*
508883 ACCCTTCTCTAAAGCCCACACAAGTCAGTGGC-A
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAA
508916 ACCCTTCT
1 ACCCTTCT
508924 AAGCCCAATA
Statistics
Matches: 70, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
32 4 0.06
33 37 0.53
34 29 0.41
ACGTcount: A:0.30, C:0.36, G:0.15, T:0.20
Consensus pattern (34 bp):
ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCAA
Found at i:508987 original size:49 final size:49
Alignment explanation
Indices: 508923--510116 Score: 1550
Period size: 49 Copynumber: 24.9 Consensus size: 49
508913 GCAACCCTTC
* * *
508923 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* *
508972 TAAGACCAATGTAGCTGGCCTTGACA-CAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGA-ATCAGCACATTGGCACCTTTATCTT
* *
509021 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
*
509070 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA-C-----CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* * *
509113 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
*
509162 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA-C-----CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* *
509205 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* * *
509254 TAAGTCCAATGTAGCTGGCCTTGACTTAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* *
509303 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* *
509352 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* *
509401 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* *
509450 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* *
509499 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
*
509548 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA-C-----CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* * *
509591 TAAGTTCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
*
509640 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
*
509689 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* *
509738 TAAGTCCAATGTAGCTGGCCTTGACTCAACACATTGG---C---ATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* * * *
509781 TAAGTCCAATATAGCTGGTCTTGAATCAGCATATTGGCATCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* * * * *
509830 TAAGACCAATGTAGCTGGCCTTGACTCAGCACATTGGCCCCTTCACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* * * * * * *
509879 TAAGCCCGATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
509928 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C-----CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* * * * * *
509971 TAAGCCCGATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
* * * *
510020 TAAGTCCAATATAGCTGGCCTTGAATCAGTATATCGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TTT--ATCTT
* * *
510072 TAAGTTCAATGTAGCTGGCTTTGAATCAGCACATTGACATCCTTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CCTTT
510117 TTCATCGTCT
Statistics
Matches: 1000, Mismatches: 109, Indels: 69
0.85 0.09 0.06
Matches are distributed among these distances:
43 189 0.19
44 4 0.00
46 2 0.00
48 5 0.00
49 755 0.75
50 4 0.00
52 39 0.04
53 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (49 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTT
Found at i:509100 original size:98 final size:98
Alignment explanation
Indices: 508923--510116 Score: 1818
Period size: 98 Copynumber: 12.4 Consensus size: 98
508913 GCAACCCTTC
* *
508923 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
*
508988 GGCCTTGACACAGCACATTGGCACCTTCATCTT
66 GGCCTTGACTCAGCACATTGGCACCTTCATCTT
509021 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
509086 GGCCTTGACTCAGCACATTGGCA----C--CTT
66 GGCCTTGACTCAGCACATTGGCACCTTCATCTT
*
509113 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
509178 GGCCTTGACTCAGCACATTGGCA----C--CTT
66 GGCCTTGACTCAGCACATTGGCACCTTCATCTT
509205 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
*
509270 GGCCTTGACTTAGCACATTGGCACCTTCATCTT
66 GGCCTTGACTCAGCACATTGGCACCTTCATCTT
509303 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
509368 GGCCTTGACTCAGCACATTGGCACCTTCATCTT
66 GGCCTTGACTCAGCACATTGGCACCTTCATCTT
509401 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
509466 GGCCTTGACTCAGCACATTGGCACCTTCATCTT
66 GGCCTTGACTCAGCACATTGGCACCTTCATCTT
509499 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
509564 GGCCTTGACTCAGCACATTGGCA----C--CTT
66 GGCCTTGACTCAGCACATTGGCACCTTCATCTT
*
509591 TAAGTTCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
*
509656 GGCCTTGACTCAGCACATTGGCACCTTTATCTT
66 GGCCTTGACTCAGCACATTGGCACCTTCATCTT
* * *
509689 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
*
509754 GGCCTTGACTCAACACATTGG------CATCTT
66 GGCCTTGACTCAGCACATTGGCACCTTCATCTT
* * *
509781 TAAGTCCAATATAGCTGGTCTTGAATCAGCATATTGGCATCTTTATCTTTAAGACCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
* *
509846 GGCCTTGACTCAGCACATTGGCCCCTTCACCTT
66 GGCCTTGACTCAGCACATTGGCACCTTCATCTT
* * * * *
509879 TAAGCCCGATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
*
509944 GGCCTTGAATCAGCACATTGGCA----C--CTT
66 GGCCTTGACTCAGCACATTGGCACCTTCATCTT
* * * * *
509971 TAAGCCCGATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCTTTAAGTCCAATATAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
* * * *
510036 GGCCTTGAATCAGTATATCGGCACCTTTTCCATCTT
66 GGCCTTGACTCAGCACATTGGCACC--TT-CATCTT
* * * * *
510072 TAAGTTCAATGTAGCTGGCTTTGAATCAGCACATTGACATCCTTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CCTTT
510117 TTCATCGTCT
Statistics
Matches: 1022, Mismatches: 46, Indels: 52
0.91 0.04 0.05
Matches are distributed among these distances:
92 438 0.43
94 3 0.00
96 1 0.00
98 540 0.53
99 1 0.00
101 34 0.03
102 5 0.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (98 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
GGCCTTGACTCAGCACATTGGCACCTTCATCTT
Found at i:509306 original size:190 final size:190
Alignment explanation
Indices: 508923--510116 Score: 1869
Period size: 190 Copynumber: 6.2 Consensus size: 190
508913 GCAACCCTTC
* *
508923 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
*
508988 GGCCTTGACACAGCACATTGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
66 GGCCTTGACTCAGCACATTGGCA----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
509053 ATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA----C--CT
125 ATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCT
509112 T
190 T
*
509113 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
509178 GGCCTTGACTCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC
66 GGCCTTGACTCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC
*
509243 ACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTTAGCACATTGGCACCTTCATCTT
131 ACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
509303 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
509368 GGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
66 GGCCTTGACTCAGCACATTGGCA----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
509433 ATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCT
125 ATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCT
509498 T
190 T
509499 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
*
509564 GGCCTTGACTCAGCACATTGGCACCTTTAAGTTCAATATAGCTGGCCTTGAATCAGCATATTGGC
66 GGCCTTGACTCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC
*
509629 ACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTATCTT
131 ACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
* * *
509689 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
* * *
509754 GGCCTTGACTCAACACATTGGCATCTTTAAGTCCAATATAGCTGGTCTTGAATCAGCATATTGGC
66 GGCCTTGACTCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC
* * * *
509819 ATCTTTATCTTTAAGACCAATGTAGCTGGCCTTGACTCAGCACATTGGCCCCTTCACCTT
131 ACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
* * * * *
509879 TAAGCCCGATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
* * * *
509944 GGCCTTGAATCAGCACATTGGCACCTTTAAGCCCGATATCGCTGGCCTTGAATCAGCATATTGGC
66 GGCCTTGACTCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC
* * * * * *
510009 ACCTTTTTCTTTAAGTCCAATATAGCTGGCCTTGAATCAGTATATCGGCACCTTTTCCATCTT
131 ACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACC--TT-CATCTT
* * * * *
510072 TAAGTTCAATGTAGCTGGCTTTGAATCAGCACATTGACATCCTTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CCTTT
510117 TTCATCGTCT
Statistics
Matches: 934, Mismatches: 54, Indels: 28
0.92 0.05 0.03
Matches are distributed among these distances:
184 90 0.10
186 1 0.00
188 1 0.00
190 611 0.65
192 3 0.00
193 36 0.04
194 4 0.00
196 188 0.20
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (190 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
GGCCTTGACTCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC
ACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
Found at i:511060 original size:20 final size:20
Alignment explanation
Indices: 511016--511073 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
511006 ATTTCAACGA
***
511016 TTTGTATCGATACATAAAAT
1 TTTGTATCGATACATATTTT
*
511036 GTTGTATCGATACATATTTT
1 TTTGTATCGATACATATTTT
511056 TTTGTATCGATACA-ATTT
1 TTTGTATCGATACATATTT
511074 AAGCTACTGC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
19 4 0.12
20 29 0.88
ACGTcount: A:0.31, C:0.10, G:0.12, T:0.47
Consensus pattern (20 bp):
TTTGTATCGATACATATTTT
Found at i:511275 original size:52 final size:52
Alignment explanation
Indices: 511147--511267 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
511137 GACGGATCTT
*
511147 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
511199 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
511251 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
511268 ATAAATTTTC
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Done.