Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2506
Parameters: 2 7 7 80 10 50 1000
Length:  48440

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
319--367
17
2.8
17
79
14
64
55
4
0
40
1.19
3043--3105
26
2.5
25
75
12
65
42
0
1
55
1.09
3768--3882
56
2.1
56
96
0
212
20
10
17
51
1.74
14822--14848
2
13.5
2
100
0
54
51
0
48
0
1.00
15239--15267
2
14.5
2
100
0
58
48
0
0
51
1.00
15281--15356
25
3.1
25
73
17
77
52
0
2
44
1.14
15291--15352
24
2.5
27
77
17
71
53
0
3
43
1.17
15762--15802
18
2.3
18
87
8
57
60
0
0
39
0.96
16107--16146
19
2.0
20
90
4
64
67
0
2
30
1.04
17078--17107
14
2.1
15
93
6
53
43
0
0
56
0.99
17549--17593
16
2.8
16
82
3
54
55
4
0
40
1.20
17779--17831
25
2.1
25
86
6
72
60
3
1
33
1.26
17777--17826
16
2.9
18
77
16
52
58
2
2
38
1.21
18733--18770
18
2.1
19
90
5
60
52
0
0
47
1.00
19977--20061
26
3.3
25
80
12
84
54
1
0
44
1.07
19998--20064
25
2.6
25
80
15
68
59
0
0
40
0.97
20176--20218
18
2.2
20
88
8
63
48
6
0
44
1.29
20668--20734
28
2.5
26
75
13
66
53
0
0
46
1.00
20675--20716
17
2.4
18
80
15
52
54
0
0
45
0.99
25513--25540
3
9.3
3
100
0
56
32
35
32
0
1.58
26161--26233
6
12.8
6
69
16
57
63
0
0
36
0.95
26173--26338
11
15.2
11
63
23
66
59
0
0
40
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26161--26275
38
2.9
41
79
16
127
60
0
0
40
0.97
26201--26352
19
8.1
19
64
22
54
57
0
0
42
1.03
26221--26291
16
4.4
16
71
20
58
54
0
0
45
0.99
26816--26840
10
2.5
10
100
0
50
40
0
0
60
0.97
26810--26846
16
2.5
14
91
8
56
43
0
0
56
0.99
27742--27785
23
2.0
22
82
13
54
59
4
0
36
1.18
31630--31673
22
2.0
23
86
8
65
59
0
0
40
0.98
31635--31682
21
2.3
20
82
13
53
58
0
0
41
0.98
32605--32646
14
2.9
15
83
13
52
42
0
0
57
0.99
32641--32690
15
3.3
15
86
8
57
70
2
0
28
0.99
32857--32918
29
2.1
29
82
5
72
40
3
1
54
1.26
32877--32924
14
3.4
14
77
5
51
35
2
2
60
1.20
34039--34099
31
2.0
31
96
0
113
27
0
9
62
1.27
34040--34092
17
3.3
17
69
15
58
28
0
7
64
1.21
35143--35183
21
2.0
21
85
0
55
36
0
0
63
0.95
35235--35290
20
2.8
20
75
8
60
48
0
0
51
1.00
35258--35297
21
1.9
21
89
0
62
45
0
0
55
0.99
35480--35648
15
11.1
15
66
17
71
57
0
0
41
1.03
35481--35640
14
11.5
14
68
18
68
57
0
0
41
1.03
35513--35648
52
2.6
51
75
9
132
55
0
0
43
1.04
35604--35655
19
2.7
20
85
11
65
63
0
0
36
0.95
35478--35645
30
6.0
29
70
18
115
57
0
0
41
1.03
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36144--36212
19
3.8
18
75
11
52
62
0
4
33
1.15
36177--36215
16
2.4
17
82
4
53
69
0
0
30
0.89
36181--36262
32
2.6
32
80
3
85
57
1
2
39
1.20
36729--36772
23
2.0
23
86
8
65
34
4
0
61
1.16
36737--36812
39
1.9
39
87
10
111
31
9
0
59
1.29
40110--40169
19
3.2
18
86
11
61
51
0
0
48
1.00
40112--40160
19
2.4
20
86
13
73
46
0
0
53
1.00
40123--40173
19
2.7
20
87
9
79
56
0
0
43
0.99
41220--41273
28
2.0
26
82
13
65
38
0
3
57
1.17
41372--41407
17
2.1
18
89
5
56
38
5
0
55
1.23
43343--43390
23
2.1
23
84
0
60
56
2
0
41
1.11
44189--44235
24
1.9
24
83
12
60
40
2
0
57
1.11
44291--44352
29
2.1
29
93
0
106
51
1
12
33
1.50
45779--45833
26
2.1
26
83
6
67
60
0
0
40
0.97

Tables:   1

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