genome.fa.s2507.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2507
Parameters: 2 7 7 80 10 50 1000
Length:  75348

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1296--1382	1	87.0	1	88	0	129	94	2	3	0	0.37
2347--3302	55	17.3	55	91	3	1385	28	30	20	20	1.97
2504--2590	26	3.2	26	65	23	70	28	35	18	17	1.93
2896--3036	26	5.2	26	61	16	70	29	27	19	24	1.98
2347--3302	165	5.8	166	93	2	1534	28	30	20	20	1.97
3083--3230	29	5.3	29	59	18	71	28	31	18	21	1.97
3896--3950	18	3.2	18	82	10	78	80	0	3	16	0.86
3918--3947	1	30.0	1	100	0	60	100	0	0	0	0.00
3952--4008	21	2.7	21	97	0	105	33	10	19	36	1.86
4064--4131	19	3.9	19	78	21	85	35	11	14	38	1.83
4085--4109	13	1.9	13	100	0	50	36	16	16	32	1.90
4066--4128	32	2.0	32	96	0	117	34	12	15	36	1.86
4171--4196	13	2.0	13	100	0	52	30	15	15	38	1.88
4151--4217	33	2.0	33	88	0	98	25	14	16	43	1.86
6664--7045	52	7.3	52	71	15	261	28	25	13	32	1.93
6664--7044	104	3.6	103	75	15	402	28	25	13	33	1.93
6817--6889	28	2.6	30	87	8	100	24	30	19	26	1.98
6549--7112	212	2.6	212	96	1	1004	27	26	14	31	1.94
7029--7105	28	2.8	28	87	0	100	23	33	19	23	1.97
9714--9802	27	3.5	27	77	13	109	31	7	4	56	1.48
9714--9812	24	4.0	24	80	7	126	30	7	4	58	1.43
15129--15159	15	2.0	16	93	6	55	51	6	6	35	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18181--18220	20	2.0	21	85	5	55	12	7	0	80	0.91
23876--24519	323	2.0	323	92	0	1074	24	19	27	27	1.99
26423--26447	13	1.9	13	100	0	50	36	16	16	32	1.90
34464--34579	52	2.2	52	89	3	171	29	15	27	27	1.96
34483--34597	52	2.2	54	80	12	150	33	15	25	26	1.95
36786--36840	19	2.7	21	80	13	69	38	12	16	32	1.86
36808--36871	19	3.7	19	76	23	86	32	12	18	35	1.89
36828--36852	13	1.9	13	100	0	50	36	16	16	32	1.90
36809--36878	32	2.2	32	100	0	140	32	12	18	35	1.89
47488--47513	13	2.0	13	100	0	52	30	15	15	38	1.88
47574--47646	20	3.6	20	81	3	101	31	19	13	35	1.91
47552--47646	41	2.3	42	96	1	174	29	17	12	40	1.87
48253--48298	16	2.8	16	93	6	74	30	39	2	28	1.69
50104--50142	13	3.0	13	96	0	69	35	15	17	30	1.91
50128--50206	20	3.7	20	70	20	70	45	16	12	25	1.82
52218--52255	15	2.5	15	91	0	58	13	21	15	50	1.78
56319--56344	13	2.0	13	100	0	52	30	15	15	38	1.88
56405--56477	20	3.6	20	81	3	101	31	19	13	35	1.91
56383--56477	41	2.3	42	96	1	174	29	17	12	40	1.87
59485--59528	21	2.1	21	83	8	54	50	4	0	45	1.22
63045--63103	27	2.2	27	100	0	118	28	8	6	55	1.55
63375--63401	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64769--64812	22	2.0	22	86	0	61	25	13	11	50	1.75
65334--65363	3	10.0	3	92	0	51	66	3	0	30	1.07
65657--65697	4	10.2	4	94	0	64	56	0	19	24	1.42
69653--69780	20	5.8	20	72	19	85	45	11	13	29	1.79
69707--69780	21	3.6	20	79	3	85	44	13	10	31	1.78
71656--71737	33	2.4	34	78	9	89	7	18	30	43	1.77
71675--71771	16	6.1	15	72	13	68	6	16	34	43	1.73
71675--71719	17	2.8	16	86	3	63	2	17	31	48	1.59
71753--71782	16	1.9	15	93	6	51	16	10	33	40	1.82
72001--72054	14	3.8	14	80	2	54	83	9	7	0	0.82
73677--73727	15	3.6	14	80	17	52	84	13	1	0	0.71
73677--73726	25	2.0	24	84	3	64	84	14	2	0	0.72
73682--73737	26	2.1	28	83	6	71	83	8	7	0	0.80
73635--73745	57	1.9	59	80	7	129	75	17	7	0	1.01

Tables:   1

The End!