genome.fa.s2511.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2511
Parameters: 2 7 7 80 10 50 1000
Length:  86742

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4508--4532	1	25.0	1	100	0	50	0	0	0	100	0.00
6037--6062	12	2.2	12	100	0	52	15	42	0	42	1.47
8613--8659	21	2.2	21	88	0	67	31	19	12	36	1.89
9978--10016	20	2.0	20	90	5	62	38	7	7	46	1.61
12530--12555	13	2.0	13	100	0	52	30	7	7	53	1.57
12866--12933	31	2.2	31	89	0	100	27	16	20	35	1.94
20484--20553	33	2.1	34	86	2	97	48	0	1	50	1.09
21179--21249	27	2.6	27	84	6	90	22	7	22	47	1.75
21326--21371	20	2.3	20	84	0	56	10	47	4	36	1.58
22624--22943	159	2.0	159	98	0	622	32	17	22	27	1.96
25911--25981	27	2.6	27	88	6	99	22	7	23	46	1.76
26058--26103	20	2.3	20	84	0	56	10	47	4	36	1.58
27643--27674	3	10.7	3	100	0	64	31	0	0	68	0.90
27961--27996	13	2.6	14	86	8	56	47	13	19	19	1.83
33094--33151	20	2.9	19	76	5	62	39	15	10	34	1.81
33667--33787	38	3.3	37	68	15	117	28	17	23	31	1.97
33663--33820	70	2.3	70	95	2	282	26	15	24	33	1.95
33796--35131	28	46.8	28	84	6	1064	24	17	31	27	1.97
33796--34847	263	4.1	262	84	7	1150	22	17	31	27	1.97
33796--35003	205	6.0	201	84	6	1079	23	17	31	27	1.96
33828--35151	55	23.3	56	83	7	1103	24	16	31	27	1.97
34296--35182	138	6.3	137	82	6	814	26	15	31	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33846--35182	138	9.4	136	82	7	788	24	16	31	27	1.97
36204--36243	1	40.0	1	84	0	53	0	2	5	92	0.45
36206--36243	10	3.8	10	96	0	67	0	2	5	92	0.47
36203--36243	22	1.9	21	90	5	64	0	2	7	90	0.54
36485--36531	21	2.2	22	85	14	64	8	10	8	72	1.29
43607--43664	20	2.9	19	79	5	71	37	15	12	34	1.85
48151--48191	6	6.8	6	91	0	64	21	0	46	31	1.52
49172--49221	24	2.2	22	85	7	64	34	0	0	66	0.92
50427--50526	49	2.0	49	94	0	173	55	24	5	16	1.61
51442--51474	15	2.2	15	89	10	50	36	9	3	51	1.49
56300--56335	2	18.0	2	94	0	63	47	50	2	0	1.15
56335--56376	2	21.0	2	100	0	84	50	0	0	50	1.00
60967--61007	21	2.0	21	85	0	55	46	0	0	53	1.00
60995--61043	20	2.4	20	80	12	55	61	0	0	38	0.96
72095--72137	13	3.3	13	84	9	52	32	0	0	67	0.91
72197--72252	25	2.2	24	78	9	58	46	12	0	41	1.42
72251--72293	13	3.2	14	80	9	54	62	2	0	34	1.08
74102--74457	79	4.5	78	89	1	487	34	15	25	24	1.95
75864--75929	21	3.5	21	67	26	65	19	31	6	42	1.76
75836--76021	35	5.6	34	91	6	287	19	30	5	44	1.74
75885--75977	14	5.7	14	67	28	51	20	34	6	38	1.78
75836--76021	65	2.8	66	90	7	297	19	30	5	44	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76479--76572	42	2.3	42	83	7	113	44	12	24	18	1.84
76715--77192	61	7.9	61	80	8	528	29	20	26	24	1.99
76720--77169	122	3.7	122	94	0	769	29	20	26	23	1.99
77130--77314	94	2.0	94	88	6	277	24	18	31	24	1.98
77233--78495	55	22.5	55	77	12	763	22	20	30	26	1.98
77620--77696	40	1.9	41	86	7	113	27	16	36	19	1.93
77670--78495	172	4.8	165	84	9	975	22	20	29	27	1.98
78009--78096	26	3.3	26	65	14	70	20	19	32	27	1.97
77672--78463	288	2.8	280	90	4	1234	22	20	29	27	1.98
78288--78373	26	3.2	26	67	15	66	22	19	32	25	1.97
77233--78495	110	11.2	109	82	11	1422	22	20	30	26	1.98
83554--83897	79	4.3	78	86	3	447	34	13	25	26	1.93
85272--85425	35	4.6	34	93	4	199	19	29	5	46	1.72
85291--85425	35	3.9	35	99	0	261	20	31	5	43	1.73

Tables:   1

The End!