Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2512
Parameters: 2 7 7 80 10 50 1000
Length:  88623

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
882--931
22
2.3
22
89
3
75
54
2
0
44
1.11
882--948
23
3.0
22
89
4
91
50
2
1
44
1.26
1157--1194
20
1.9
20
84
10
51
50
5
0
44
1.24
1433--1498
14
4.5
15
70
28
52
51
6
1
40
1.36
1454--1514
28
2.1
28
82
8
70
54
4
0
40
1.22
3314--3554
126
1.9
126
82
3
306
37
14
9
38
1.79
5238--5273
2
18.0
2
100
0
72
50
0
0
50
1.00
11356--11408
27
2.0
27
96
0
97
35
11
7
45
1.69
12560--14216
349
4.7
347
75
13
1151
39
9
10
41
1.71
13340--13395
27
2.1
26
83
12
69
35
3
0
60
1.14
16481--16524
16
2.6
18
82
10
56
65
0
2
31
1.05
20728--20765
14
2.7
14
91
0
58
44
13
5
36
1.66
21864--21900
12
3.1
12
100
0
74
51
24
16
8
1.71
21867--21900
6
5.7
6
85
0
50
50
26
17
5
1.69
22485--22729
121
2.0
121
97
0
463
30
19
18
31
1.96
26268--26309
17
2.6
16
85
7
57
78
4
16
0
0.91
27914--27946
5
6.6
5
92
0
57
81
3
0
15
0.80
28084--28150
18
3.8
18
75
18
68
56
0
0
43
0.99
28107--28166
8
7.0
8
75
17
50
60
0
1
38
1.07
28084--28180
20
4.8
19
75
18
81
57
0
1
41
1.05
28082--28159
35
2.2
35
84
11
97
56
0
1
42
1.07
28182--28226
20
2.3
19
85
7
63
44
2
6
46
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28498--28530
8
4.2
8
88
3
50
0
12
0
87
0.53
28489--28530
19
2.3
18
88
8
59
2
14
0
83
0.75
28728--28793
28
2.3
29
78
2
71
43
1
3
51
1.26
36768--36922
79
2.0
79
90
0
247
29
14
10
45
1.77
46318--46393
32
2.4
32
93
0
125
30
10
23
35
1.89
52381--52442
26
2.4
25
80
12
72
45
0
1
53
1.10
52970--53016
21
2.4
20
76
13
53
65
0
2
31
1.04
52972--53032
21
2.8
21
73
14
52
62
0
1
36
1.05
52984--53034
21
2.5
20
83
3
66
60
0
1
37
1.08
52986--53056
20
3.4
22
77
12
53
53
0
2
43
1.15
53208--53240
14
2.3
15
90
10
52
51
0
3
45
1.16
55688--55731
21
2.1
21
91
8
72
45
0
0
54
0.99
55864--55945
37
2.2
38
84
6
105
54
1
2
41
1.21
55876--55906
9
3.4
9
90
0
53
58
0
0
41
0.98
57022--57145
16
7.8
16
70
6
72
47
5
2
44
1.39
57023--57142
48
2.5
46
82
6
141
47
5
2
44
1.40
57080--57154
16
4.5
17
79
12
68
45
9
1
44
1.44
64862--64909
2
24.0
2
93
0
78
0
45
2
52
1.12
65713--65742
2
15.0
2
100
0
60
50
0
0
50
1.00
66960--66997
18
2.1
18
100
0
76
34
5
15
44
1.69
67005--67047
18
2.2
21
88
12
65
62
0
2
34
1.08
68654--68703
4
12.5
4
76
16
50
0
24
2
74
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68657--68703
14
3.5
13
80
11
51
0
25
2
72
0.96
68654--68703
22
2.3
22
86
13
68
0
24
2
74
0.93
70064--70092
2
14.5
2
100
0
58
48
0
0
51
1.00
71774--71942
38
4.4
38
90
0
230
26
31
15
26
1.96
75510--75647
38
3.6
38
88
0
177
26
28
14
30
1.95
76687--76730
22
2.0
22
86
0
61
34
2
11
52
1.50
76999--77071
22
3.3
22
76
3
67
45
12
6
35
1.69
77133--77224
22
4.2
22
84
2
105
43
7
7
41
1.61
77418--77475
22
2.6
23
78
5
66
39
3
12
44
1.58
78473--78512
22
1.9
22
85
10
57
32
0
10
57
1.32
78016--78809
419
1.9
414
82
6
958
42
7
4
44
1.54
80244--80307
21
3.2
22
75
16
59
40
1
9
48
1.45
84179--84204
13
2.0
13
100
0
52
46
0
0
53
1.00
86895--87112
41
5.3
41
87
1
267
44
12
10
32
1.76
86895--87163
123
2.2
119
82
6
308
44
12
10
33
1.75
86933--87161
41
5.7
41
85
6
254
45
11
9
33
1.73

Tables:   1

The End!