genome.fa.s2520.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2520
Parameters: 2 7 7 80 10 50 1000
Length:  94337

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65--572	49	10.7	49	84	8	637	25	26	18	30	1.98
65--527	92	5.0	91	82	10	520	24	26	18	29	1.98
65--581	141	3.7	140	90	6	753	24	26	18	30	1.98
1466--1490	13	1.9	13	100	0	50	36	16	16	32	1.90
1446--1516	34	2.1	34	86	2	99	33	11	14	40	1.81
1559--1583	13	1.9	13	100	0	50	32	16	16	36	1.90
1592--1712	52	2.3	52	97	0	224	34	18	18	28	1.94
8607--8643	8	4.3	9	83	13	51	89	10	0	0	0.49
8613--8644	16	2.0	16	100	0	64	93	6	0	0	0.34
9943--10021	30	2.6	31	87	2	106	22	29	18	29	1.98
9997--10179	34	6.0	27	74	19	123	21	35	14	28	1.93
9970--10281	33	9.7	33	77	14	287	21	33	13	31	1.93
9968--10478	70	7.4	70	80	13	471	20	33	13	32	1.91
10197--10369	87	2.0	88	94	1	303	20	32	13	32	1.91
10001--10439	158	2.8	157	83	9	501	21	34	13	31	1.92
10292--10478	71	2.7	69	90	4	295	18	33	13	34	1.90
10310--10498	104	1.8	104	88	4	292	20	34	12	32	1.90
10292--10498	34	5.9	35	82	11	253	19	35	12	32	1.89
10310--10531	104	2.1	102	82	8	261	21	35	13	30	1.91
10483--10549	33	2.0	34	97	2	127	26	35	17	19	1.94
10552--11061	49	10.7	49	85	8	671	24	26	18	30	1.98
10552--11017	92	5.0	91	83	10	547	24	26	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10552--11070	141	3.7	140	91	5	787	24	26	17	30	1.97
11957--11981	13	1.9	13	100	0	50	36	16	16	32	1.90
11937--12006	33	2.1	33	89	0	104	34	11	14	40	1.82
12047--12071	13	1.9	13	100	0	50	32	16	16	36	1.90
12080--12200	52	2.3	52	97	0	224	34	18	18	28	1.94
19097--19133	8	4.3	9	83	13	51	89	10	0	0	0.49
19103--19134	16	2.0	16	100	0	64	93	6	0	0	0.34
20433--20511	30	2.6	31	83	2	97	22	27	18	30	1.98
20488--20935	70	7.0	63	75	17	360	20	33	13	32	1.91
20487--20669	34	6.0	27	74	19	123	21	35	14	28	1.93
20475--20771	33	9.2	33	77	14	284	20	32	13	32	1.92
20488--20771	61	4.4	69	86	7	302	21	33	13	31	1.92
20687--20859	87	2.0	88	94	1	303	20	32	13	32	1.91
20491--20929	158	2.8	157	83	9	501	21	34	13	31	1.92
20782--20968	71	2.7	70	90	5	297	18	33	13	34	1.90
20800--20988	104	1.8	104	88	4	292	20	34	12	32	1.90
20782--20988	34	5.9	35	82	11	253	19	35	12	32	1.89
20800--21021	104	2.1	102	82	8	261	21	35	13	30	1.91
20973--21039	33	2.0	34	97	2	127	26	35	17	19	1.94
21042--21551	49	10.7	49	85	8	680	24	26	18	30	1.98
21042--21507	92	5.0	91	83	10	547	24	26	18	30	1.98
21042--21560	141	3.7	140	91	5	796	24	26	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22447--22471	13	1.9	13	100	0	50	36	16	16	32	1.90
22427--22496	33	2.1	33	89	0	104	34	11	14	40	1.82
22537--22561	13	1.9	13	100	0	50	32	16	16	36	1.90
22570--22690	52	2.3	52	97	0	224	34	18	18	28	1.94
25757--27570	476	3.8	476	92	0	3022	36	14	18	30	1.91
27943--27968	13	2.0	13	100	0	52	38	15	15	30	1.88
30190--30239	21	2.3	21	80	10	57	56	4	18	22	1.58
32036--32074	15	2.6	15	91	0	60	51	15	20	12	1.76
34119--34185	37	1.9	35	88	11	102	29	25	11	32	1.92
34643--34668	13	2.0	13	100	0	52	30	15	15	38	1.88
34707--34782	21	3.7	21	82	3	109	28	18	11	40	1.86
34727--34800	20	3.7	20	81	3	103	31	20	13	35	1.91
34707--34800	41	2.3	41	100	0	188	29	19	12	38	1.89
35373--35436	13	4.9	13	90	0	101	35	18	14	31	1.91
35373--35436	26	2.5	26	97	0	119	35	18	14	31	1.91
36966--37008	23	2.0	21	81	9	50	13	9	16	60	1.58
39093--39668	287	2.0	287	91	0	920	35	13	19	31	1.90
39379--44383	476	10.5	475	88	1	7042	35	14	18	31	1.91
45135--45160	13	2.0	13	100	0	52	30	15	15	38	1.88
45219--45274	20	2.8	20	88	0	76	30	14	16	39	1.88
47535--47581	21	2.3	21	76	23	55	42	4	19	34	1.70
47704--47742	13	3.0	13	96	0	69	35	15	17	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47728--47806	20	3.7	20	78	15	77	44	15	15	25	1.85
49822--49852	15	2.1	15	93	0	53	12	22	16	48	1.80
51655--51699	21	2.1	21	84	8	56	22	20	4	53	1.63
53917--53942	13	2.0	13	100	0	52	30	15	15	38	1.88
54325--92318	475	79.5	477	80	8	27214	35	15	18	30	1.92
55525--77232	951	23.0	952	88	2	30400	35	14	18	30	1.91
69235--77232	476	16.9	477	86	2	10906	35	15	18	30	1.92
77235--92318	951	16.0	949	88	2	21820	35	15	18	30	1.92
87536--88653	158	7.1	158	63	14	334	36	14	18	30	1.91
92321--94337	475	4.3	474	88	2	2921	35	15	18	30	1.92

Tables:   1

The End!