genome.fa.s2525.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2525
Parameters: 2 7 7 80 10 50 1000
Length:  60699

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4--1728	476	3.6	474	82	5	1956	35	13	19	31	1.90
1529--1964	231	1.9	231	83	0	568	36	13	18	31	1.90
2230--5653	468	7.4	469	73	12	2002	36	13	17	32	1.89
11990--12014	13	1.9	13	100	0	50	36	16	16	32	1.90
11971--12036	33	2.0	33	87	0	96	33	12	15	39	1.84
12056--12080	13	1.9	13	100	0	50	32	16	16	36	1.90
15257--15291	4	8.8	4	93	0	61	74	0	2	22	0.95
17371--17743	79	4.7	78	77	10	312	33	15	24	26	1.95
20390--21041	62	10.5	62	88	1	923	29	18	26	24	1.98
20390--21041	125	5.3	123	91	1	937	29	18	26	24	1.98
20407--21041	187	3.4	186	89	1	927	28	18	27	25	1.98
21364--24353	477	6.3	475	80	3	3226	36	13	17	31	1.89
24374--27458	477	6.5	475	84	3	3700	36	13	17	31	1.90
28563--28689	19	7.6	19	69	28	119	33	13	18	34	1.90
28582--28606	13	1.9	13	100	0	50	32	20	16	32	1.94
28563--28702	32	4.4	32	98	0	262	32	14	18	34	1.91
28614--28703	13	6.0	13	71	26	63	34	14	17	33	1.90
28718--28787	20	3.8	20	70	24	73	38	14	11	35	1.82
28721--28800	33	2.4	33	97	0	151	33	15	13	37	1.86
28786--28839	20	2.7	20	97	0	99	24	14	16	44	1.85
28585--28800	32	6.8	32	85	6	134	34	15	16	32	1.91
37236--37266	13	2.4	13	88	0	53	35	12	16	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37311--37363	19	2.7	19	80	11	63	35	15	15	33	1.88
37655--40092	475	5.1	471	85	3	2782	36	13	17	32	1.89
37655--40092	951	2.6	947	84	3	3058	36	13	17	32	1.89
40101--43413	475	7.0	476	81	5	3680	36	13	18	32	1.89
42385--43065	159	4.3	158	67	13	392	34	12	17	35	1.88
45188--45221	3	11.3	3	93	0	59	38	0	32	29	1.58
52335--52382	20	2.4	20	77	19	55	35	12	18	33	1.89
53035--56217	477	6.7	475	82	4	3459	36	13	18	31	1.90
56013--56448	231	1.9	231	83	0	568	36	13	18	31	1.90
56713--58179	468	3.1	467	82	8	1569	35	14	17	32	1.90

Tables:   1

The End!