genome.fa.s2529.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2529
Parameters: 2 7 7 80 10 50 1000
Length:  68136

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172--325	76	2.0	76	96	0	281	33	16	24	25	1.95
1580--1630	2	26.0	2	90	4	77	49	1	49	0	1.12
2605--2638	18	1.9	17	88	5	50	67	0	0	32	0.91
4209--4249	18	2.2	19	86	4	57	34	0	7	58	1.26
6499--6800	127	2.4	125	80	8	315	43	4	5	46	1.47
7057--7111	16	3.5	17	78	11	55	40	0	0	60	0.97
19539--19564	13	2.0	13	100	0	52	46	15	15	23	1.83
21265--21361	28	3.4	30	70	13	73	48	2	1	48	1.20
21344--21411	27	2.4	28	74	13	68	63	2	1	32	1.18
22662--22700	5	7.6	5	85	2	51	74	17	7	0	1.05
22662--22700	10	3.8	10	93	3	60	74	17	7	0	1.05
22663--22700	15	2.5	15	91	0	58	73	18	7	0	1.06
25973--26008	7	5.4	7	93	6	58	72	0	0	27	0.85
26947--27125	92	2.0	92	97	1	342	38	8	16	36	1.79
27348--27381	18	1.9	17	94	5	59	41	0	0	58	0.98
27348--27386	18	2.1	18	86	13	53	41	0	0	58	0.98
45936--45998	33	1.9	33	86	0	90	30	26	14	28	1.95
45796--46256	130	3.5	130	83	3	545	25	28	14	31	1.95
45992--46057	31	2.1	31	85	0	87	22	33	10	33	1.89
46379--46443	32	2.0	32	85	5	87	32	30	15	21	1.94
46584--46699	52	2.3	52	80	3	137	25	27	14	31	1.95
46816--46938	61	2.0	62	88	1	185	26	25	10	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50143--50402	98	2.7	96	83	3	308	31	18	10	39	1.85
55327--55462	51	2.7	51	89	0	191	40	11	18	29	1.86
55428--55482	20	2.8	20	88	0	83	40	14	12	32	1.84
59224--59720	78	6.4	78	75	3	428	34	14	24	26	1.94
59177--59720	234	2.3	232	79	3	556	34	14	24	26	1.94
59585--59842	139	1.9	139	84	3	349	36	15	22	25	1.93
59655--59773	61	2.0	61	86	3	168	36	15	23	24	1.94
62491--62530	20	2.0	21	85	5	55	32	7	12	47	1.69

Tables:   1

The End!