Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold253
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2064896
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 499 characters in sequence are not A, C, G, or T
File 13 of 13
Found at i:1984892 original size:25 final size:24
Alignment explanation
Indices: 1984872--1984923 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 24
1984862 CTAGGAGCCA
1984872 AAAGATCTCTGATCCAAAGGAAACC
1 AAAGATCTCTGATCCAAAGG-AACC
1984897 AAAGATCTCTGATCCAAAGGAAACC
1 AAAGATCTCTGATCCAAAGG-AACC
1984922 AA
1 AA
1984924 TGGGACAAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.46, C:0.23, G:0.15, T:0.15
Consensus pattern (24 bp):
AAAGATCTCTGATCCAAAGGAACC
Found at i:1991293 original size:2 final size:2
Alignment explanation
Indices: 1991280--1991321 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
1991270 ACCACAAATA
*
1991280 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1991322 TGGTAGCTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1992249 original size:21 final size:23
Alignment explanation
Indices: 1992220--1992282 Score: 67
Period size: 23 Copynumber: 2.7 Consensus size: 23
1992210 ATTTATTTTT
1992220 AAATGTAATTATAAAAAATA-TAA
1 AAAT-TAATTATAAAAAATATTAA
*
1992243 AAA-TAATTAAAATAAAAATATTAA
1 AAATTAATT-ATA-AAAAATATTAA
*
1992267 AAATTAATTTTAAAAA
1 AAATTAATTATAAAAA
1992283 TTAAATAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
21 5 0.15
22 2 0.06
23 14 0.42
24 7 0.21
25 5 0.15
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.32
Consensus pattern (23 bp):
AAATTAATTATAAAAAATATTAA
Found at i:1992265 original size:14 final size:15
Alignment explanation
Indices: 1992239--1992268 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1992229 TATAAAAAAT
1992239 ATAAAAATAATTAAA
1 ATAAAAATAATTAAA
1992254 ATAAAAAT-ATTAAA
1 ATAAAAATAATTAAA
1992268 A
1 A
1992269 ATTAATTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (15 bp):
ATAAAAATAATTAAA
Found at i:1992296 original size:27 final size:28
Alignment explanation
Indices: 1992254--1992326 Score: 80
Period size: 27 Copynumber: 2.6 Consensus size: 28
1992244 AATAATTAAA
1992254 ATAAAAATATTAAAAATTAATTTT-AAAAAT
1 ATAAAAA-ATT-AAAATT-ATTTTAAAAAAT
*
1992284 -TAAATAAA-TAAAATTCTTTTAAAAAAT
1 ATAAA-AAATTAAAATTATTTTAAAAAAT
1992311 ATAAAAAATTAAAATT
1 ATAAAAAATTAAAATT
1992327 TTGTATGAAC
Statistics
Matches: 38, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
26 4 0.11
27 15 0.39
28 12 0.32
29 5 0.13
30 2 0.05
ACGTcount: A:0.63, C:0.01, G:0.00, T:0.36
Consensus pattern (28 bp):
ATAAAAAATTAAAATTATTTTAAAAAAT
Found at i:1993341 original size:17 final size:18
Alignment explanation
Indices: 1993319--1993354 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
1993309 GTAATTAATG
1993319 ATATTTTTAATT-TTTTT
1 ATATTTTTAATTATTTTT
1993336 ATATTTTTAATTATTTTT
1 ATATTTTTAATTATTTTT
1993354 A
1 A
1993355 ATAAAAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (18 bp):
ATATTTTTAATTATTTTT
Found at i:1993593 original size:11 final size:12
Alignment explanation
Indices: 1993547--1993603 Score: 66
Period size: 11 Copynumber: 5.0 Consensus size: 12
1993537 TACTACTTTA
1993547 AATATAAAAAAT
1 AATATAAAAAAT
*
1993559 -ATA-AAAATAT
1 AATATAAAAAAT
*
1993569 GATATAAAAAAT
1 AATATAAAAAAT
*
1993581 AAT-TAAAACAT
1 AATATAAAAAAT
1993592 AATATAAAAAAT
1 AATATAAAAAAT
1993604 CAATGACACA
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
10 6 0.16
11 16 0.43
12 15 0.41
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (12 bp):
AATATAAAAAAT
Found at i:1993623 original size:22 final size:23
Alignment explanation
Indices: 1993547--1993603 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 23
1993537 TACTACTTTA
* *
1993547 AATATAAAAAAT-ATAAAAATAT
1 AATATAAAAAATAATTAAAACAT
*
1993569 GATATAAAAAATAATTAAAACAT
1 AATATAAAAAATAATTAAAACAT
1993592 AATATAAAAAAT
1 AATATAAAAAAT
1993604 CAATGACACA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
22 11 0.37
23 19 0.63
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (23 bp):
AATATAAAAAATAATTAAAACAT
Found at i:1994096 original size:20 final size:19
Alignment explanation
Indices: 1994073--1994155 Score: 73
Period size: 19 Copynumber: 4.3 Consensus size: 19
1994063 ATGTATGTAT
1994073 ATAAATATATATAAAATAAA
1 ATAAAT-TATATAAAATAAA
1994093 ATAAATTAT-TAATATATAAA
1 ATAAATTATATAA-A-ATAAA
*
1994113 A-AAATTATATAAAATATA
1 ATAAATTATATAAAATAAA
** *
1994131 ATATTTTAAATAAAA-AAA
1 ATAAATTATATAAAATAAA
1994149 TATAAAT
1 -ATAAAT
1994156 ACTAATATAT
Statistics
Matches: 51, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
18 10 0.20
19 26 0.51
20 15 0.29
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
ATAAATTATATAAAATAAA
Found at i:1994125 original size:33 final size:32
Alignment explanation
Indices: 1994088--1994149 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
1994078 TATATATAAA
*
1994088 ATAAAATA-AATTATTAATATATAAAAAAATTAT
1 ATAAAATATAA-TATT-ATAAATAAAAAAATTAT
*
1994121 ATAAAATATAATATTTTAAATAAAAAAAT
1 ATAAAATATAATATTATAAATAAAAAAAT
1994150 ATAAATACTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
32 12 0.46
33 12 0.46
34 2 0.08
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (32 bp):
ATAAAATATAATATTATAAATAAAAAAATTAT
Found at i:1994170 original size:29 final size:27
Alignment explanation
Indices: 1994071--1994168 Score: 85
Period size: 28 Copynumber: 3.5 Consensus size: 27
1994061 ATATGTATGT
*
1994071 ATATAA-ATATATATAAAATAAA-ATAA
1 ATATAATATATAAATAAAA-AAATATAA
**
1994097 ATTATTAATATATAAA-AAAATTATATAAA
1 A-TA-TAATATATAAATAAAAAAATAT-AA
*
1994126 ATATAATATTTTAAATAAAAAAATATAA
1 ATATAATA-TATAAATAAAAAAATATAA
1994154 ATACTAATATATAAA
1 ATA-TAATATATAAA
1994169 ATTTTTTCTT
Statistics
Matches: 57, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
26 1 0.02
27 8 0.14
28 26 0.46
29 22 0.39
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.35
Consensus pattern (27 bp):
ATATAATATATAAATAAAAAAATATAA
Found at i:1994200 original size:20 final size:20
Alignment explanation
Indices: 1994171--1994208 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
1994161 TATATAAAAT
1994171 TTTTTCTTTCCTTTTTTTTAA
1 TTTTTCTTT-CTTTTTTTTAA
1994192 TTTTT-TTTCTTTTTTTT
1 TTTTTCTTTCTTTTTTTT
1994209 CTTTCTTGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.05, C:0.11, G:0.00, T:0.84
Consensus pattern (20 bp):
TTTTTCTTTCTTTTTTTTAA
Found at i:1994664 original size:13 final size:13
Alignment explanation
Indices: 1994648--1994680 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
1994638 TAAATTTATC
1994648 AATTAAATGATTA
1 AATTAAATGATTA
*
1994661 AATT-AATGATTT
1 AATTAAATGATTA
1994673 AATTAAAT
1 AATTAAAT
1994681 TGAATTAGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (13 bp):
AATTAAATGATTA
Found at i:1995065 original size:17 final size:17
Alignment explanation
Indices: 1995031--1995078 Score: 62
Period size: 17 Copynumber: 2.9 Consensus size: 17
1995021 ATATCACTTC
*
1995031 AAGTTCAAATCA-TTTT
1 AAGTTCAAGTCATTTTT
*
1995047 AATTTCAAGTCATTTTT
1 AAGTTCAAGTCATTTTT
*
1995064 AAGTTCATGTCATTT
1 AAGTTCAAGTCATTT
1995079 CAGATTCTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
16 10 0.37
17 17 0.63
ACGTcount: A:0.31, C:0.12, G:0.08, T:0.48
Consensus pattern (17 bp):
AAGTTCAAGTCATTTTT
Found at i:1996389 original size:2 final size:2
Alignment explanation
Indices: 1996382--1996415 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
1996372 GTATTTGCCA
1996382 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1996416 TCTAACTCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:1996575 original size:6 final size:6
Alignment explanation
Indices: 1996566--1996590 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
1996556 AGTTTTCTTT
1996566 TTTCCA TTTCCA TTTCCA TTTCCA T
1 TTTCCA TTTCCA TTTCCA TTTCCA T
1996591 GGGAGAACAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.32, G:0.00, T:0.52
Consensus pattern (6 bp):
TTTCCA
Found at i:2003236 original size:46 final size:46
Alignment explanation
Indices: 2003183--2003277 Score: 181
Period size: 46 Copynumber: 2.1 Consensus size: 46
2003173 TATATTCATA
*
2003183 TAAGTGTAATCCTTATGATAATATAGTTATCGATTCATTAAGAGTT
1 TAAGTGTAATCCTTATGATAATATAGTTATCGATTCATTAAAAGTT
2003229 TAAGTGTAATCCTTATGATAATATAGTTATCGATTCATTAAAAGTT
1 TAAGTGTAATCCTTATGATAATATAGTTATCGATTCATTAAAAGTT
2003275 TAA
1 TAA
2003278 CTTATTTTCC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.37, C:0.08, G:0.14, T:0.41
Consensus pattern (46 bp):
TAAGTGTAATCCTTATGATAATATAGTTATCGATTCATTAAAAGTT
Found at i:2013980 original size:5 final size:5
Alignment explanation
Indices: 2013967--2013996 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
2013957 GTGATTAAGA
*
2013967 AAAAA AAAAG AAAAG AAAAG AAAAG AAAAG
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG
2013997 TACTCCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:2022362 original size:17 final size:17
Alignment explanation
Indices: 2022327--2022384 Score: 55
Period size: 17 Copynumber: 3.2 Consensus size: 17
2022317 ATTTCATATT
* *
2022327 TTTTCTCTTTTTTTTTTC
1 TTTT-TCTTTCTTTCTTC
2022345 TTTTTCTTTCTTTCTTC
1 TTTTTCTTTCTTTCTTC
2022362 TTCATCTTCTTTCTTTCTT-
1 TT--T-TTCTTTCTTTCTTC
2022381 TTTT
1 TTTT
2022385 ACCTAACTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
16 1 0.03
17 14 0.40
18 4 0.11
19 3 0.09
20 13 0.37
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTTTCTTTCTTTCTTC
Found at i:2022439 original size:29 final size:29
Alignment explanation
Indices: 2022393--2022450 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
2022383 TTACCTAACT
2022393 TTTTTTTTCAACCCATAACCACCATGACA
1 TTTTTTTTCAACCCATAACCACCATGACA
* *
2022422 TTTTTTTTCAACCTATAACCACTATGACA
1 TTTTTTTTCAACCCATAACCACCATGACA
2022451 GAAAAGCAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.31, C:0.28, G:0.03, T:0.38
Consensus pattern (29 bp):
TTTTTTTTCAACCCATAACCACCATGACA
Found at i:2023995 original size:63 final size:63
Alignment explanation
Indices: 2023891--2024014 Score: 158
Period size: 63 Copynumber: 2.0 Consensus size: 63
2023881 TTCCCATCAA
* *
2023891 ATTAAGACTTCATATGTTTGATCACCACCATGGCATCGTAATAAGTGACACCAAGTAACTCTC
1 ATTAAGACTTCATATGTGTGATCACCACCATGGCATCGTAATAAGTAACACCAAGTAACTCTC
* ** * * * * *
2023954 ATTAGGACTTCATATGTGTGATTGCTACCATGGCATTGTAATTAGTAACACTAAGTCACTC
1 ATTAAGACTTCATATGTGTGATCACCACCATGGCATCGTAATAAGTAACACCAAGTAACTC
2024015 CCATCGAATT
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
63 51 1.00
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.31
Consensus pattern (63 bp):
ATTAAGACTTCATATGTGTGATCACCACCATGGCATCGTAATAAGTAACACCAAGTAACTCTC
Found at i:2024943 original size:907 final size:907
Alignment explanation
Indices: 2023184--2025907 Score: 5297
Period size: 907 Copynumber: 3.0 Consensus size: 907
2023174 CCTTTTGTCA
2023184 CAAAGGTGGCCTGGGTTCAAAACCCAGGCCACTCAAATTTTTTTCCTTTTTTATTATTATTTTTT
1 CAAAGGTGGCCTGGGTTCAAAACCCAGGCCACTCAAATTTTTTTCCTTTTTTATTATTATTTTTT
* *
2023249 TTAAAAAAACGAGTGTCCTAAAAAAGGCCTGACAAAATTTGGTGTCTACAGCAATGATATCAGGT
66 TTAAAAAAACGAGTGTCCTAAAAAAGGCCGGACAAAATTTGGTGTCTACAACAATGATATCAGGT
2023314 CATCCTGATACCCCTGTGGCTCTCGTCAGTGTTATGGCCTTGAAGCTACTATTTTATCCCACCAA
131 CATCCTGATACCCCTGTGGCTCTCGTCAGTGTTATGGCCTTGAAGCTACTATTTTATCCCACCAA
*
2023379 CTTGCCAAATCTTCTACACATTTAACTACTGATGGCAGCATACTCTATGCTCTTACCCCTATAAC
196 CTTGCCAAATCTTCTGCACATTTAACTACTGATGGCAGCATACTCTATGCTCTTACCCCTATAAC
2023444 TAGACTATTATTCACAGTATTAAGCTCAATTTCAGGCCATAAAAAGCTAACTGGTCGCCATACAG
261 TAGACTATTATTCACAGTATTAAGCTCAATTTCAGGCCATAAAAAGCTAACTGGTCGCCATACAG
2023509 AAGACTCAACAACAATTAGCTTAGCTCATGCATTCTTAGGCTAATCGCTAAACCGAGTAACATGC
326 AAGACTCAACAACAATTAGCTTAGCTCATGCATTCTTAGGCTAATCGCTAAACCGAGTAACATGC
*
2023574 TAATTGCCCAAATCAAGTCGTTTGACAAGAATATCAGACTTGACAAGCTGTGGTTGAAAGCTCTT
391 TAATTGCCCAAATCAAGTCGTTTGACAAGAATATCAGACCTGACAAGCTGTGGTTGAAAGCTCTT
*
2023639 GCCTTACCCCAGAGCATCAAACCTAGCAACACAAACCATCAGACCAGACCAACGAACTTTTTTTT
456 GCCTTACCCCAGAGCATCAAACCTAGCAACACAAACCATCAGACCAGACCAACGAACTTTCTTTT
*
2023704 CCTACCCAAGATAGTAGTATAGTAGAACAAACTAGCAGATATGGACGGTAAGCCAATTTCGAACA
521 CCTACCCAAGATAGTAGTATAGCAGAACAAACTAGCAGATATGGACGGTAAGCCAATTTCGAACA
*
2023769 CTTGGAATGCAATTCATCTACAAAAATATTAATATAAAAGTTGGATATCAGGCATAAAACACAAT
586 CTTGGAATGCAATTCATCTACAAAAATATTAATATAAAAGTTGGATATCAGGCATAAAACTCAAT
2023834 ACCAACTTAAGTGCATACTACTATGACACTAAGTCATTTCTATCTAATTCCCATCAAATTAAGAC
651 ACCAACTTAAGTGCATACTACTATGACACTAAGTCATTTCTATCTAATTCCCATCAAATTAAGAC
*
2023899 TTCATATGTTTGATCACCACCATGGCATCGTAATAAGTGACACCAAGTAACTCTCATTAGGACTT
716 TTCATATGTTTGATCGCCACCATGGCATCGTAATAAGTGACACCAAGTAACTCTCATTAGGACTT
2023964 CATATGTGTGATTGCTACCATGGCATTGTAATTAGTAACACTAAGTCACTCCCATCGAATTAAGA
781 CATATGTGTGATTGCTACCATGGCATTGTAATTAGTAACACTAAGTCACTCCCATCGAATTAAGA
2024029 CTTCACCAGTTTGACTGCTAGAATGAGACTACATTTAATGACACCAAATCACTCCGACCAAG
846 CTTCACCAGTTTGACTGCTAGAATGAGACTACATTTAATGACACCAAATCACTCCGACCAAG
* *
2024091 CAAAGATGGCCTGGGTTCAAAACCCAGGCCACTAAAATTTTTTTCCTTTTTTATTATTATTTTTT
1 CAAAGGTGGCCTGGGTTCAAAACCCAGGCCACTCAAATTTTTTTCCTTTTTTATTATTATTTTTT
*
2024156 TTAAAAAAACGAGTGTCCTAAAAAAGGCCGGACAAAATTTGGTGTATACAACAATGATATCAGGT
66 TTAAAAAAACGAGTGTCCTAAAAAAGGCCGGACAAAATTTGGTGTCTACAACAATGATATCAGGT
* *
2024221 CATCCTGATACCCTTGTGGCTCTCGTCACTGTTATGGCCTTGAAGCTACTATTTTATCCCACCAA
131 CATCCTGATACCCCTGTGGCTCTCGTCAGTGTTATGGCCTTGAAGCTACTATTTTATCCCACCAA
2024286 CTTGCCAAATCTTCTGCACATTTAACTACTGATGGCAGCATACTCTATGCTCTTACCCCTATAAC
196 CTTGCCAAATCTTCTGCACATTTAACTACTGATGGCAGCATACTCTATGCTCTTACCCCTATAAC
*
2024351 TAGACTATTATTCACAGTATTAAGTTCAATTTCAGGCCATAAAAAGCTAACTGGTCGCCATACAG
261 TAGACTATTATTCACAGTATTAAGCTCAATTTCAGGCCATAAAAAGCTAACTGGTCGCCATACAG
2024416 AAGACTCAACAACAATTAGCTTAGCTCATGCATTCTTAGGCTAATCGCTAAACCGAGTAACATGC
326 AAGACTCAACAACAATTAGCTTAGCTCATGCATTCTTAGGCTAATCGCTAAACCGAGTAACATGC
2024481 TAATTGCCCAAATCAAGTCGTTTGACAAGAATATCAGACCTGACAAGCTGTGGTTGAAAGCTCTT
391 TAATTGCCCAAATCAAGTCGTTTGACAAGAATATCAGACCTGACAAGCTGTGGTTGAAAGCTCTT
2024546 GCCTTACCCCAGAGCATCAAACCTAGCAACACAAACCATCAGACCAGACCAACGAACTTTCTTTT
456 GCCTTACCCCAGAGCATCAAACCTAGCAACACAAACCATCAGACCAGACCAACGAACTTTCTTTT
2024611 CCTACCCAAGATAGTAGTATAGCAGAACAAACTAGCAGATATGGACGGTAAGCCAATTTCGAACA
521 CCTACCCAAGATAGTAGTATAGCAGAACAAACTAGCAGATATGGACGGTAAGCCAATTTCGAACA
2024676 CTTGGAATGCAATTCATCTACAAAAATATTAATATAAAAGTTGGATATCAGGCATAAAACTCAAT
586 CTTGGAATGCAATTCATCTACAAAAATATTAATATAAAAGTTGGATATCAGGCATAAAACTCAAT
2024741 ACCAACTTAAGTGCATACTACTATGACACTAAGTCATTTCTATCTAATTCCCATCAAATTAAGAC
651 ACCAACTTAAGTGCATACTACTATGACACTAAGTCATTTCTATCTAATTCCCATCAAATTAAGAC
*
2024806 TTCATATGTTTGATCGCCACCATGGCATCATAATAAGTGACACCAAGTAACTCTCATTAGGACTT
716 TTCATATGTTTGATCGCCACCATGGCATCGTAATAAGTGACACCAAGTAACTCTCATTAGGACTT
2024871 CATATGTGTGATTGCTACCATGGCATTGTAATTAGTAACACTAAGTCACTCCCATCGAATTAAGA
781 CATATGTGTGATTGCTACCATGGCATTGTAATTAGTAACACTAAGTCACTCCCATCGAATTAAGA
2024936 CTTCACCAGTTTGACTGCTAGAATGAGACTACATTTAATGACACCAAATCACTCCGACCAAG
846 CTTCACCAGTTTGACTGCTAGAATGAGACTACATTTAATGACACCAAATCACTCCGACCAAG
2024998 CAAAGGTGGCCTGGGTTCAAAACCCAGGCCACTCAAATTTTTTTCCTTTTTTATTATTATTTTTT
1 CAAAGGTGGCCTGGGTTCAAAACCCAGGCCACTCAAATTTTTTTCCTTTTTTATTATTATTTTTT
*
2025063 TTAAAAAAACGAGTGTCCTAAAAAGGGCCGGACAAAATTTGGTGTCTACAACAATGATATCAGGT
66 TTAAAAAAACGAGTGTCCTAAAAAAGGCCGGACAAAATTTGGTGTCTACAACAATGATATCAGGT
2025128 CATCCTGATACCCCTGTGGCTCTCGTCAGTGTTATGGCCTTGAAGCTACTATTTTATCCCACCAA
131 CATCCTGATACCCCTGTGGCTCTCGTCAGTGTTATGGCCTTGAAGCTACTATTTTATCCCACCAA
2025193 CTTGCCAAATCTTCTGCACATTTAACTACTGATGGCAGCATACTCTATGCTCTTACCCCTATAAC
196 CTTGCCAAATCTTCTGCACATTTAACTACTGATGGCAGCATACTCTATGCTCTTACCCCTATAAC
2025258 TAGACTATTATTCACAGTATTAAGCTCAATTTCAGGCCATAAAAAGCTAACTGGTCGCCATACAG
261 TAGACTATTATTCACAGTATTAAGCTCAATTTCAGGCCATAAAAAGCTAACTGGTCGCCATACAG
2025323 AAGACTCAACAACAATTAGCTTAGCTCATGCATTCTTAGGCTAATCGCTAAACCGAGTAACATGC
326 AAGACTCAACAACAATTAGCTTAGCTCATGCATTCTTAGGCTAATCGCTAAACCGAGTAACATGC
2025388 TAATTGCCCAAATCAAGTCGTTTGACAAGAATATCAGACCTGACAAGCTGTGGTTGAAAGCTCTT
391 TAATTGCCCAAATCAAGTCGTTTGACAAGAATATCAGACCTGACAAGCTGTGGTTGAAAGCTCTT
2025453 GCCTTACCCCAGAGCATCAAACCTAGCAACACAAACCATCAGACCAGACCAACGAACTTTCTTTT
456 GCCTTACCCCAGAGCATCAAACCTAGCAACACAAACCATCAGACCAGACCAACGAACTTTCTTTT
2025518 CCTACCCAAGATAGTAGTATAGCAGAACAAACTAGCAGATATGGACGGTAAGCCAATTTCGAACA
521 CCTACCCAAGATAGTAGTATAGCAGAACAAACTAGCAGATATGGACGGTAAGCCAATTTCGAACA
2025583 CTTGGAATGCAATTCATCTACAAAAATATTAATATAAAAGTTGGATATCAGGCATAAAACTCAAT
586 CTTGGAATGCAATTCATCTACAAAAATATTAATATAAAAGTTGGATATCAGGCATAAAACTCAAT
2025648 ACCAACTTAAGTGCATACTACTATGACACTAAGTCATTTCTATCTAATT-CCATCAAATTAAGAC
651 ACCAACTTAAGTGCATACTACTATGACACTAAGTCATTTCTATCTAATTCCCATCAAATTAAGAC
2025712 TTCATATGTTTGATCGCCACCATGGCATCGTAATAAGTGACACCAAGTAACTCTCATTAGGACTT
716 TTCATATGTTTGATCGCCACCATGGCATCGTAATAAGTGACACCAAGTAACTCTCATTAGGACTT
2025777 CATATGTGTGATTGCTACCATGGCATTGTAATTAGTAACACTAAGTCACTCCCATCGAATTAAGA
781 CATATGTGTGATTGCTACCATGGCATTGTAATTAGTAACACTAAGTCACTCCCATCGAATTAAGA
2025842 CTTCACCAGTTTGACTGCTAGAATGAGACTACATTTAATGACACCAAATCACTCCGACCAAG
846 CTTCACCAGTTTGACTGCTAGAATGAGACTACATTTAATGACACCAAATCACTCCGACCAAG
2025904 CAAA
1 CAAA
2025908 TGTCTTGTTG
Statistics
Matches: 1794, Mismatches: 23, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
906 210 0.12
907 1584 0.88
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (907 bp):
CAAAGGTGGCCTGGGTTCAAAACCCAGGCCACTCAAATTTTTTTCCTTTTTTATTATTATTTTTT
TTAAAAAAACGAGTGTCCTAAAAAAGGCCGGACAAAATTTGGTGTCTACAACAATGATATCAGGT
CATCCTGATACCCCTGTGGCTCTCGTCAGTGTTATGGCCTTGAAGCTACTATTTTATCCCACCAA
CTTGCCAAATCTTCTGCACATTTAACTACTGATGGCAGCATACTCTATGCTCTTACCCCTATAAC
TAGACTATTATTCACAGTATTAAGCTCAATTTCAGGCCATAAAAAGCTAACTGGTCGCCATACAG
AAGACTCAACAACAATTAGCTTAGCTCATGCATTCTTAGGCTAATCGCTAAACCGAGTAACATGC
TAATTGCCCAAATCAAGTCGTTTGACAAGAATATCAGACCTGACAAGCTGTGGTTGAAAGCTCTT
GCCTTACCCCAGAGCATCAAACCTAGCAACACAAACCATCAGACCAGACCAACGAACTTTCTTTT
CCTACCCAAGATAGTAGTATAGCAGAACAAACTAGCAGATATGGACGGTAAGCCAATTTCGAACA
CTTGGAATGCAATTCATCTACAAAAATATTAATATAAAAGTTGGATATCAGGCATAAAACTCAAT
ACCAACTTAAGTGCATACTACTATGACACTAAGTCATTTCTATCTAATTCCCATCAAATTAAGAC
TTCATATGTTTGATCGCCACCATGGCATCGTAATAAGTGACACCAAGTAACTCTCATTAGGACTT
CATATGTGTGATTGCTACCATGGCATTGTAATTAGTAACACTAAGTCACTCCCATCGAATTAAGA
CTTCACCAGTTTGACTGCTAGAATGAGACTACATTTAATGACACCAAATCACTCCGACCAAG
Found at i:2025797 original size:63 final size:63
Alignment explanation
Indices: 2025704--2025827 Score: 167
Period size: 63 Copynumber: 2.0 Consensus size: 63
2025694 ATTCCATCAA
* *
2025704 ATTAAGACTTCATATGTTTGATCGCCACCATGGCATCGTAATAAGTGACACCAAGTAACTCTC
1 ATTAAGACTTCATATGTGTGATCGCCACCATGGCATCGTAATAAGTAACACCAAGTAACTCTC
* * * * * * *
2025767 ATTAGGACTTCATATGTGTGATTGCTACCATGGCATTGTAATTAGTAACACTAAGTCACTC
1 ATTAAGACTTCATATGTGTGATCGCCACCATGGCATCGTAATAAGTAACACCAAGTAACTC
2025828 CCATCGAATT
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
63 52 1.00
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (63 bp):
ATTAAGACTTCATATGTGTGATCGCCACCATGGCATCGTAATAAGTAACACCAAGTAACTCTC
Found at i:2030473 original size:14 final size:14
Alignment explanation
Indices: 2030465--2030530 Score: 55
Period size: 14 Copynumber: 4.7 Consensus size: 14
2030455 TTAAACTTTG
*
2030465 AACCCTAAACCTTG
1 AACCCTAAACCTTA
*
2030479 AA-CTTCAAACCTTA
1 AACCCT-AAACCTTA
*
2030493 AACCCTAAA-TTTA
1 AACCCTAAACCTTA
*
2030506 AAACCTAAAACCTTA
1 AACCCT-AAACCTTA
*
2030521 AACTCTAAAC
1 AACCCTAAAC
2030531 TTTTAACCCA
Statistics
Matches: 40, Mismatches: 8, Indels: 8
0.71 0.14 0.14
Matches are distributed among these distances:
13 10 0.25
14 21 0.52
15 9 0.22
ACGTcount: A:0.45, C:0.29, G:0.02, T:0.24
Consensus pattern (14 bp):
AACCCTAAACCTTA
Found at i:2030530 original size:21 final size:22
Alignment explanation
Indices: 2030447--2030529 Score: 73
Period size: 21 Copynumber: 3.9 Consensus size: 22
2030437 GGCTTTGAAT
* * *
2030447 CTAAAACTTTAAACTTTGAACC
1 CTAAAACCTTAAACTTTAAAAC
* *
2030469 CT-AAACCTTGAAC-TTCAAAC
1 CTAAAACCTTAAACTTTAAAAC
* *
2030489 CTTAAACCCTAAA-TTTAAAAC
1 CTAAAACCTTAAACTTTAAAAC
*
2030510 CTAAAACCTTAAACTCTAAA
1 CTAAAACCTTAAACTTTAAA
2030530 CTTTTAACCC
Statistics
Matches: 48, Mismatches: 10, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
20 7 0.15
21 34 0.71
22 7 0.15
ACGTcount: A:0.45, C:0.25, G:0.02, T:0.28
Consensus pattern (22 bp):
CTAAAACCTTAAACTTTAAAAC
Found at i:2030538 original size:28 final size:28
Alignment explanation
Indices: 2030485--2030543 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
2030475 CTTGAACTTC
*
2030485 AAACCTTAAACCCTAAATTTAAAACCTA
1 AAACCTTAAACCCTAAATTTAAAACCCA
* *
2030513 AAACCTTAAACTCTAAACTTT-TAACCCA
1 AAACCTTAAACCCTAAA-TTTAAAACCCA
2030541 AAA
1 AAA
2030544 TTCTAAAGCT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 24 0.89
29 3 0.11
ACGTcount: A:0.49, C:0.25, G:0.00, T:0.25
Consensus pattern (28 bp):
AAACCTTAAACCCTAAATTTAAAACCCA
Found at i:2030593 original size:23 final size:22
Alignment explanation
Indices: 2030562--2030607 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
2030552 CTTAACCATT
* *
2030562 AAACCCTAAAATCTTAAGTTTTA
1 AAACCCT-AAACCTTAAATTTTA
*
2030585 AAACTCTAAACCTTAAATTTTA
1 AAACCCTAAACCTTAAATTTTA
2030607 A
1 A
2030608 GCCCAAACCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.46, C:0.17, G:0.02, T:0.35
Consensus pattern (22 bp):
AAACCCTAAACCTTAAATTTTA
Found at i:2030912 original size:8 final size:7
Alignment explanation
Indices: 2030699--2030964 Score: 161
Period size: 7 Copynumber: 37.9 Consensus size: 7
2030689 CCATAAACTC
2030699 TAAACCT
1 TAAACCT
* *
2030706 TAAGCTT
1 TAAACCT
2030713 TAAACCT
1 TAAACCT
*
2030720 TAAA-AT
1 TAAACCT
2030726 ATAAACAC-
1 -TAAAC-CT
*
2030734 TAATCCCT
1 TAA-ACCT
2030742 TAAACCT
1 TAAACCT
*
2030749 TAAACTT
1 TAAACCT
2030756 TAAACC-
1 TAAACCT
**
2030762 TAAAATT
1 TAAACCT
2030769 TCAAA-CT
1 T-AAACCT
2030776 CTAAACCT
1 -TAAACCT
* **
2030784 CAAATAT
1 TAAACCT
2030791 TAAACCT
1 TAAACCT
2030798 TAAATCC-
1 TAAA-CCT
2030805 TAAACCT
1 TAAACCT
2030812 TAAACCT
1 TAAACCT
* * *
2030819 TATATCA
1 TAAACCT
*
2030826 TAAACTT
1 TAAACCT
2030833 TAAACCT
1 TAAACCT
**
2030840 TAAATGT
1 TAAACCT
*
2030847 TAAACTT
1 TAAACCT
2030854 TAAACCT
1 TAAACCT
*
2030861 TAAA-CG
1 TAAACCT
2030867 TAGAA-CT
1 TA-AACCT
2030874 TAAA-CT
1 TAAACCT
2030880 CTAAACCT
1 -TAAACCT
*
2030888 TAAACCC
1 TAAACCT
*
2030895 TAAACTT
1 TAAACCT
2030902 TAAAACCT
1 T-AAACCT
*
2030910 TAAACAT
1 TAAACCT
*
2030917 TAAATCT
1 TAAACCT
*
2030924 TAAACTT
1 TAAACCT
*
2030931 TAAACCC
1 TAAACCT
*
2030938 TAACCCT
1 TAAACCT
*
2030945 TAAATCT
1 TAAACCT
2030952 TAAACCT
1 TAAACCT
2030959 TAAACC
1 TAAACC
2030965 CTGAACCTAG
Statistics
Matches: 194, Mismatches: 50, Indels: 30
0.71 0.18 0.11
Matches are distributed among these distances:
6 14 0.07
7 160 0.82
8 20 0.10
ACGTcount: A:0.44, C:0.23, G:0.02, T:0.31
Consensus pattern (7 bp):
TAAACCT
Found at i:2030913 original size:15 final size:15
Alignment explanation
Indices: 2030889--2030934 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
2030879 TCTAAACCTT
*
2030889 AAACCCTAAACTTTA
1 AAACCTTAAACTTTA
*
2030904 AAACCTTAAACATT-
1 AAACCTTAAACTTTA
*
2030918 AAATCTTAAACTTTA
1 AAACCTTAAACTTTA
2030933 AA
1 AA
2030935 CCCTAACCCT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
14 12 0.46
15 14 0.54
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (15 bp):
AAACCTTAAACTTTA
Found at i:2031052 original size:32 final size:33
Alignment explanation
Indices: 2030981--2031052 Score: 76
Period size: 32 Copynumber: 2.2 Consensus size: 33
2030971 CTAGAACTTC
* *
2030981 AAACCTCAAACTTCGAACCTTAAGCTCCTAACCT
1 AAACC-CAAACTTCGAACCTTAACCTCCAAACCT
* *
2031015 TAACCCAAAC-TCGAACCTTATACCT-CAAATCT
1 AAACCCAAACTTCGAACCTTA-ACCTCCAAACCT
2031047 AAACCC
1 AAACCC
2031053 TTAACCCCTA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
32 20 0.62
33 8 0.25
34 4 0.12
ACGTcount: A:0.38, C:0.36, G:0.04, T:0.22
Consensus pattern (33 bp):
AAACCCAAACTTCGAACCTTAACCTCCAAACCT
Found at i:2031359 original size:43 final size:43
Alignment explanation
Indices: 2031287--2031375 Score: 124
Period size: 43 Copynumber: 2.1 Consensus size: 43
2031277 AAGTTGAATA
* * *
2031287 AAACGTATATATGTAACCACGATTATATGATCAATCGTATATC
1 AAACGTATATATGTAACCACAATTATATGACCAATCATATATC
* * *
2031330 AAACTTATCTATGTAACCACAATTTTATGACCAATCATATATC
1 AAACGTATATATGTAACCACAATTATATGACCAATCATATATC
2031373 AAA
1 AAA
2031376 TATATTATTT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.33
Consensus pattern (43 bp):
AAACGTATATATGTAACCACAATTATATGACCAATCATATATC
Found at i:2035497 original size:7 final size:7
Alignment explanation
Indices: 2035477--2035571 Score: 52
Period size: 7 Copynumber: 13.6 Consensus size: 7
2035467 GCTTTGAGCT
2035477 TCAAGCC
1 TCAAGCC
2035484 -CTAAGCC
1 TC-AAGCC
*
2035491 TCGAGCC
1 TCAAGCC
2035498 -CAAAGCC
1 TC-AAGCC
2035505 TCAAGCC
1 TCAAGCC
*
2035512 TCAAGTC
1 TCAAGCC
**
2035519 TTGAGCC
1 TCAAGCC
*
2035526 CCAAGCC
1 TCAAGCC
* *
2035533 TCGATCC
1 TCAAGCC
*
2035540 CCAAGCC
1 TCAAGCC
*
2035547 TCGAGCC
1 TCAAGCC
2035554 -CTAAGCC
1 TC-AAGCC
*
2035561 CCAAGCC
1 TCAAGCC
2035568 TCAA
1 TCAA
2035572 ATCTTAAACT
Statistics
Matches: 63, Mismatches: 19, Indels: 12
0.67 0.20 0.13
Matches are distributed among these distances:
6 3 0.05
7 57 0.90
8 3 0.05
ACGTcount: A:0.26, C:0.43, G:0.17, T:0.14
Consensus pattern (7 bp):
TCAAGCC
Found at i:2035503 original size:14 final size:14
Alignment explanation
Indices: 2035480--2035560 Score: 90
Period size: 14 Copynumber: 5.8 Consensus size: 14
2035470 TTGAGCTTCA
*
2035480 AGCCCTAAGCCTCG
1 AGCCCCAAGCCTCG
* *
2035494 AGCCCAAAGCCTCA
1 AGCCCCAAGCCTCG
* * *
2035508 AGCCTCAAGTCTTG
1 AGCCCCAAGCCTCG
2035522 AGCCCCAAGCCTCG
1 AGCCCCAAGCCTCG
*
2035536 ATCCCCAAGCCTCG
1 AGCCCCAAGCCTCG
*
2035550 AGCCCTAAGCC
1 AGCCCCAAGCC
2035561 CCAAGCCTCA
Statistics
Matches: 54, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 54 1.00
ACGTcount: A:0.25, C:0.43, G:0.19, T:0.14
Consensus pattern (14 bp):
AGCCCCAAGCCTCG
Found at i:2035508 original size:28 final size:28
Alignment explanation
Indices: 2035477--2035567 Score: 94
Period size: 28 Copynumber: 3.2 Consensus size: 28
2035467 GCTTTGAGCT
2035477 TCAAGCCCTAAGCCTCGAGCCCAAAGCC
1 TCAAGCCCTAAGCCTCGAGCCCAAAGCC
* * *
2035505 TCAAG-CCTCAAGTCTTGAGCCCCAAGCC
1 TCAAGCCCT-AAGCCTCGAGCCCAAAGCC
* * * *
2035533 TCGATCCCCAAGCCTCGAGCCCTAAGCC
1 TCAAGCCCTAAGCCTCGAGCCCAAAGCC
*
2035561 CCAAGCC
1 TCAAGCC
2035568 TCAAATCTTA
Statistics
Matches: 49, Mismatches: 12, Indels: 4
0.75 0.18 0.06
Matches are distributed among these distances:
27 3 0.06
28 44 0.90
29 2 0.04
ACGTcount: A:0.25, C:0.44, G:0.18, T:0.13
Consensus pattern (28 bp):
TCAAGCCCTAAGCCTCGAGCCCAAAGCC
Found at i:2035592 original size:21 final size:21
Alignment explanation
Indices: 2035566--2035719 Score: 112
Period size: 21 Copynumber: 7.7 Consensus size: 21
2035556 AAGCCCCAAG
* *
2035566 CCTCAAATCTTAAACTTTAAA
1 CCTCAAACCCTAAACTTTAAA
2035587 CCTCAAACCCTAAAC-TTAAA
1 CCTCAAACCCTAAACTTTAAA
* *
2035607 TCCT-AAACCTTAAA-TCTAAA
1 -CCTCAAACCCTAAACTTTAAA
*
2035627 CCTTAAACCCTAAA-TCTTAAA
1 CCTCAAACCCTAAACT-TTAAA
* *
2035648 TCTCAAACCCTAAA---T--C
1 CCTCAAACCCTAAACTTTAAA
*
2035664 CCT-AAACCTTAAACTTCTAAA
1 CCTCAAACCCTAAACTT-TAAA
*
2035685 CCTCAAACCTTAAACTTTAAA
1 CCTCAAACCCTAAACTTTAAA
* *
2035706 CCTTAAATCCTAAA
1 CCTCAAACCCTAAA
2035720 TCATAAACCT
Statistics
Matches: 107, Mismatches: 15, Indels: 22
0.74 0.10 0.15
Matches are distributed among these distances:
15 9 0.08
16 2 0.02
18 1 0.01
19 4 0.04
20 28 0.26
21 50 0.47
22 13 0.12
ACGTcount: A:0.43, C:0.29, G:0.00, T:0.28
Consensus pattern (21 bp):
CCTCAAACCCTAAACTTTAAA
Found at i:2035600 original size:14 final size:14
Alignment explanation
Indices: 2035583--2035740 Score: 126
Period size: 14 Copynumber: 11.2 Consensus size: 14
2035573 TCTTAAACTT
*
2035583 TAAACCTCAAACCC
1 TAAACCTTAAACCC
*
2035597 TAAA-CTTAAATCC
1 TAAACCTTAAACCC
*
2035610 TAAACCTTAAA-TC
1 TAAACCTTAAACCC
2035623 TAAACCTTAAACCC
1 TAAACCTTAAACCC
* *
2035637 TAAATCTTAAA-TC
1 TAAACCTTAAACCC
*
2035650 TCAAACCCTAAATCCC
1 T-AAACCTTAAA-CCC
*
2035666 TAAACCTTAAACTTC
1 TAAACCTTAAAC-CC
* *
2035681 TAAACCTCAAACCT
1 TAAACCTTAAACCC
* *
2035695 TAAACTTTAAACCT
1 TAAACCTTAAACCC
* *
2035709 TAAATCC-TAAATCA
1 TAAA-CCTTAAACCC
2035723 TAAACCTTAAAACCC
1 TAAACCTT-AAACCC
2035738 TAA
1 TAA
2035741 GTTATAAGCC
Statistics
Matches: 114, Mismatches: 21, Indels: 17
0.75 0.14 0.11
Matches are distributed among these distances:
13 27 0.24
14 56 0.49
15 29 0.25
16 2 0.02
ACGTcount: A:0.44, C:0.29, G:0.00, T:0.27
Consensus pattern (14 bp):
TAAACCTTAAACCC
Found at i:2035601 original size:7 final size:7
Alignment explanation
Indices: 2035591--2035740 Score: 65
Period size: 7 Copynumber: 21.3 Consensus size: 7
2035581 TTTAAACCTC
2035591 AAACCCT
1 AAACCCT
*
2035598 AAA-CTT
1 AAACCCT
*
2035604 AAATCCT
1 AAACCCT
*
2035611 AAACCTT
1 AAACCCT
*
2035618 AAA-TCT
1 AAACCCT
*
2035624 AAACCTT
1 AAACCCT
2035631 AAACCCT
1 AAACCCT
* *
2035638 AAATCTT
1 AAACCCT
*
2035645 AAA-TCT
1 AAACCCT
2035651 CAAACCCT
1 -AAACCCT
2035659 AAATCCCT
1 AAA-CCCT
*
2035667 AAACCTT
1 AAACCCT
*
2035674 AAACTTCT
1 AAAC-CCT
2035682 AAA-CCT
1 AAACCCT
*
2035688 CAAACCTT
1 -AAACCCT
**
2035696 AAACTTT
1 AAACCCT
*
2035703 AAACCTT
1 AAACCCT
*
2035710 AAATCCT
1 AAACCCT
* *
2035717 AAATCAT
1 AAACCCT
*
2035724 AAACCTT
1 AAACCCT
2035731 AAAACCCT
1 -AAACCCT
2035739 AA
1 AA
2035741 GTTATAAGCC
Statistics
Matches: 107, Mismatches: 27, Indels: 18
0.70 0.18 0.12
Matches are distributed among these distances:
6 12 0.11
7 74 0.69
8 21 0.20
ACGTcount: A:0.45, C:0.29, G:0.00, T:0.27
Consensus pattern (7 bp):
AAACCCT
Found at i:2035692 original size:22 final size:21
Alignment explanation
Indices: 2035667--2035708 Score: 75
Period size: 22 Copynumber: 2.0 Consensus size: 21
2035657 CTAAATCCCT
2035667 AAACCTTAAACTTCTAAACCTC
1 AAACCTTAAACTT-TAAACCTC
2035689 AAACCTTAAACTTTAAACCT
1 AAACCTTAAACTTTAAACCT
2035709 TAAATCCTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.43, C:0.29, G:0.00, T:0.29
Consensus pattern (21 bp):
AAACCTTAAACTTTAAACCTC
Found at i:2050049 original size:3 final size:3
Alignment explanation
Indices: 2050041--2050068 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
2050031 CGTCACCGTC
2050041 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
2050069 AAGAATAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:2050358 original size:2 final size:2
Alignment explanation
Indices: 2050351--2050379 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
2050341 ATGTAATAAA
2050351 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2050380 ATTACATAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2055333 original size:13 final size:13
Alignment explanation
Indices: 2055315--2055386 Score: 56
Period size: 14 Copynumber: 5.3 Consensus size: 13
2055305 TTACCGTTTA
2055315 AAACTTAAACTTT
1 AAACTTAAACTTT
*
2055328 AAACTTCAAATTTT
1 AAACTT-AAACTTT
2055342 AAACCTTAAA-TCTT
1 AAA-CTTAAACT-TT
* *
2055356 AACCTTAAATTTT
1 AAACTTAAACTTT
* *
2055369 GAATTTCAAACTTT
1 AAACTT-AAACTTT
2055383 AAAC
1 AAAC
2055387 CCCGAACTAC
Statistics
Matches: 46, Mismatches: 8, Indels: 9
0.73 0.13 0.14
Matches are distributed among these distances:
13 18 0.39
14 25 0.54
15 3 0.07
ACGTcount: A:0.43, C:0.17, G:0.01, T:0.39
Consensus pattern (13 bp):
AAACTTAAACTTT
Found at i:2055352 original size:14 final size:14
Alignment explanation
Indices: 2055311--2055368 Score: 66
Period size: 14 Copynumber: 4.2 Consensus size: 14
2055301 AACATTACCG
* *
2055311 TTTAAAACTTAAAC
1 TTTAAACCTTAAAT
2055325 TTTAAA-CTTCAAAT
1 TTTAAACCTT-AAAT
2055339 TTTAAACCTTAAAT
1 TTTAAACCTTAAAT
*
2055353 CTT-AACCTTAAAT
1 TTTAAACCTTAAAT
2055366 TTT
1 TTT
2055369 GAATTTCAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
13 15 0.38
14 21 0.54
15 3 0.08
ACGTcount: A:0.41, C:0.16, G:0.00, T:0.43
Consensus pattern (14 bp):
TTTAAACCTTAAAT
Found at i:2057275 original size:18 final size:19
Alignment explanation
Indices: 2056902--2063774 Score: 1834
Period size: 20 Copynumber: 342.2 Consensus size: 19
2056892 CCCGAACACT
*
2056902 AAACCCTAAACCCTAAACCT
1 AAACCC-AAACCCTAAACCG
* *
2056922 ACACCCTAAACCCTAAACCT
1 AAACCC-AAACCCTAAACCG
2056942 AAACCCTAAACCCTAAA---
1 AAACCC-AAACCCTAAACCG
*
2056959 AAACCCTAAACCCTAAACCTA
1 AAACCC-AAACCCTAAACC-G
* *
2056980 AAACCTAAA-CCTAAACCCT
1 AAACCCAAACCCTAAA-CCG
2056999 AAAGCCCTAAA-CCTAAACCCG
1 AAA-CCC-AAACCCTAAA-CCG
* *
2057020 AAACCCTCAACCCCAACACCG
1 AAACCC-AAACCCTAA-ACCG
*
2057041 AAACCCTAAACCATAAACCG
1 AAACCC-AAACCCTAAACCG
** *
2057061 AAA-AAAAACGCCTAAACCT
1 AAACCCAAAC-CCTAAACCG
*
2057080 AAACCCTAAACCCTAAACCTAA
1 AAACCC-AAACCCTAAACC--G
* *
2057102 AAACCCTAAACCCTAACCCT
1 AAACCC-AAACCCTAAACCG
*
2057122 AAACCCTAAACCCTAAAACCC
1 AAACCC-AAACCCT-AAACCG
* *
2057143 AAACACTAAACCCTAAACCCT
1 AAAC-CCAAACCCTAAA-CCG
* *
2057164 AAACCCTAAACCCAAAACCCT
1 AAACCC-AAACCCTAAA-CCG
*
2057185 AAA--AAAACCCT-AACTAC-
1 AAACCCAAACCCTAAAC--CG
* * *
2057202 TAACCTAAACCCTAAACCCT
1 AAACCCAAACCCTAAA-CCG
*
2057222 AAACCCTGAACCCTAAACACCG
1 AAACCC-AAACCCT-AA-ACCG
* *
2057244 AACCCCTAAAACCC-AAACCC
1 AAACCC--AAACCCTAAACCG
* * *
2057264 AAACCGAAACCCTAACCCT
1 AAACCCAAACCCTAAACCG
2057283 AAACCCCTAAACCCTAAACCG
1 AAA-CCC-AAACCCTAAACCG
*
2057304 AAACGCCTAAAACC----CCG
1 AAAC-CC-AAACCCTAAACCG
* * *
2057321 AAACCCTAACCCTAACCCTA
1 AAACCCAAACCCTAAACC-G
2057341 ACAACCCTAAACCCTAAACCG
1 A-AACCC-AAACCCTAAACCG
* *
2057362 AAAACCATAAACCCTAACCTAACCTA
1 -AAACC-CAAACCCT-A---AACC-G
*
2057388 AAACCCGAAACCTACCTAAAACCT
1 AAACCC-AAA-C--CCT-AAACCG
2057412 AAACCCTAAACCCTAAAAACCG
1 AAACCC-AAACCCT--AAACCG
* *
2057434 -AACCTAAACACTAAACC-
1 AAACCCAAACCCTAAACCG
* *
2057451 ATACCCTAAACCCTAAACCCT
1 AAACCC-AAACCCTAAA-CCG
* *
2057472 AAACCCTAAAACCTAAACCCT
1 AAACCC-AAACCCTAAA-CCG
*
2057493 AAACCTAAACCCTAAACC-
1 AAACCCAAACCCTAAACCG
* * *
2057511 TAACCCTAAACCCGAAACCC
1 AAACCC-AAACCCTAAACCG
* *
2057531 TAACCCTAAA-CCTAAAAAC-
1 AAACCC-AAACCCT-AAACCG
* * *
2057550 AAACCCCTAAAACCCGAACCCT
1 AAA-CCC--AAACCCTAAACCG
*
2057572 AAACCCTAAACCCTAAACCCT
1 AAACCC-AAACCCTAAA-CCG
*
2057593 AAACCCTAAACCCTAAAAACCCT
1 AAACCC-AAACCCT--AAA-CCG
* * *
2057616 AAACCTAAACACTAAACCC
1 AAACCCAAACCCTAAACCG
* *
2057635 TAACCCTAAACCCTAAACCT
1 AAACCC-AAACCCTAAACCG
*
2057655 AAACCCAAAAACCCTAAACCAT
1 AAACCC--AAACCCTAAACC-G
* *
2057677 AAACCCTAACCCTAAACCC
1 AAACCCAAACCCTAAACCG
*
2057696 TAACCCTAAACCCT-AACC-
1 AAACCC-AAACCCTAAACCG
* * *
2057714 CAACCCTAAACCC-GAACCC
1 AAACCC-AAACCCTAAACCG
* **
2057733 AACCCCTAAACCCTAACACTA
1 AAACCC-AAACCCTAA-ACCG
*
2057754 AAACCCTAAACCCTAAAACCT
1 AAACCC-AAACCCT-AAACCG
* * *
2057775 AAACCAAAAACCTAAACCC
1 AAACCCAAACCCTAAACCG
* * *
2057794 TAACCCTAACCCGTAAAAACCCTA
1 AAACCCAAACCC-T--AAA-CC-G
*
2057818 AAACCCTAAACCCTAAACCAT
1 AAACCC-AAACCCTAAACC-G
*
2057839 AAACCCTAAACCCTAAAACCCT
1 AAACCC-AAACCCT-AAA-CCG
*
2057861 AAACCCTAAA-CCTAAACCCT
1 AAACCC-AAACCCTAAA-CCG
*
2057881 AAACCCTAAAACCCTAAACCCT
1 AAACCC--AAACCCTAAA-CCG
*
2057903 AAACCCTAAACCCTAACCCG
1 AAACCC-AAACCCTAAACCG
2057923 AAACCCTAAACCCTAAACCCG
1 AAACCC-AAACCCTAAA-CCG
* *
2057944 AAACCCTAAA-CCTAACCCT
1 AAACCC-AAACCCTAAACCG
*
2057963 AAACCCGAAACCCTAAACCCT
1 AAACCC-AAACCCTAAA-CCG
2057984 AAACCCGAAAACCCTTAAACCCG
1 AAACCC--AAACCC-TAAA-CCG
* *
2058007 AAACCCTAAACCCAAAAACCCT
1 AAACCC-AAACCC-TAAA-CCG
2058029 AAA-CC--ACCCTAAACCCG
1 AAACCCAAACCCTAAA-CCG
* * *
2058046 AAACCCTAACCCGAAACCCT
1 AAACCCAAACCCTAAA-CCG
*
2058066 AAACCCTAAACCCTAACCCG
1 AAACCC-AAACCCTAAACCG
2058086 AAACCCTAAACCCT-AA---
1 AAACCC-AAACCCTAAACCG
2058102 AAACCCTAAACCCTAAACC-
1 AAACCC-AAACCCTAAACCG
* *
2058121 TAACCCAAACCCTAAACCCT
1 AAACCCAAACCCTAAA-CCG
* * *
2058141 AAACCTAAACCCGACACCCG
1 AAACCCAAACCCTA-AACCG
*
2058161 AAACCCTAAA-CCTAAACCC
1 AAACCC-AAACCCTAAACCG
* * *
2058180 TAACCCTAAA-CCTAACCCT
1 AAACCC-AAACCCTAAACCG
*
2058199 AAACCCAAAAAACACTAAACCCG
1 AAACCC---AAACCCTAAA-CCG
* * *
2058222 -AACACTAACCCTAACCCTG
1 AAACCCAAACCCTAAACC-G
*
2058241 AAGA--CAAA-CCTAACCCG
1 AA-ACCCAAACCCTAAACCG
*
2058258 AAACCCGAAACCCTAAACCT
1 AAACCC-AAACCCTAAACCG
***
2058278 AAACCCGAAA-AAGAAA---
1 AAACCC-AAACCCTAAACCG
***
2058294 AAAAAAAAACCCT-AA---
1 AAACCCAAACCCTAAACCG
2058309 AAACCCTAAAAACCCT-AACCG
1 AAACCC---AAACCCTAAACCG
*
2058330 AAACCCTAAACCCTAAACCCTA
1 AAACCC-AAACCCTAAA-CC-G
* * *
2058352 AAACCTAAAAACCCTACA-CT
1 AAACC--CAAACCCTAAACCG
2058372 AAACCCTAAACCCTAAACCCG
1 AAACCC-AAACCCTAAA-CCG
* * *
2058393 AAAACACTAACCCTAAACCCT
1 -AAACCCAAACCCTAAA-CCG
*
2058414 AAACCCTAAA-CCT-AACGCT
1 AAACCC-AAACCCTAAAC-CG
*
2058433 AAACCCAAACCCTAAACCCT
1 AAACCCAAACCCTAAA-CCG
*
2058453 AAACCCTAAACCCTAAACCC
1 AAACCC-AAACCCTAAACCG
* * *
2058473 TAACCCTAAACACTAAACCC
1 AAACCC-AAACCCTAAACCG
* *
2058493 AAACCCTAACCCTATAAACACACTA
1 AAACCCAAACCC--T-AA-AC-C-G
*
2058518 AAACCCTAAACCCTAAACCCT
1 AAACCC-AAACCCTAAA-CCG
* *
2058539 AAACACTAAACGCCTAAACCC
1 AAAC-CCAAAC-CCTAAACCG
* * *
2058560 TAACCCTAA-CCTAAACCC
1 AAACCCAAACCCTAAACCG
2058578 AAACACCGAAACCCTAAACCCG
1 AAAC-CC-AAACCCTAAA-CCG
2058600 TAAACCCTAAACCACTAAACCG
1 -AAACCC-AAACC-CTAAACCG
2058622 AAACCCTAAACCC--AACC-
1 AAACCC-AAACCCTAAACCG
* *
2058639 ATAACCCTAACCCCT--ACCAT
1 A-AACCC-AAACCCTAAACC-G
2058659 AAACCCCTAAACCCT-AACCG
1 AAA-CCC-AAACCCTAAACCG
2058679 AAACCCTAAACCCTAAA--G
1 AAACCC-AAACCCTAAACCG
*
2058697 ---CCCAAACCCTAAACCCCT
1 AAACCCAAACCCTAAA--CCG
*
2058715 AAACCCTAAACCCTAAACCC
1 AAACCC-AAACCCTAAACCG
*
2058735 AAACCCTAAACCCTAAACCT
1 AAACCC-AAACCCTAAACCG
** **
2058755 AAACCCTAAA-AATCCA-CG
1 AAACCC-AAACCCTAAACCG
* * *
2058773 AAACCCTAACACTAAACCCT
1 AAACCCAAACCCTAAA-CCG
*
2058793 AAACCCTAAACCCTAAACCC
1 AAACCC-AAACCCTAAACCG
*
2058813 TAA-CC-AACCCTAAACAC-
1 AAACCCAAACCCTAAAC-CG
* *
2058830 AAACACTAAACCCTAAACCCT
1 AAAC-CCAAACCCTAAA-CCG
**
2058851 AAACCCTAAACCCT-AACAAT
1 AAACCC-AAACCCTAAAC-CG
* *
2058871 AAACCC-TACCCTAAACCCT
1 AAACCCAAACCCTAAA-CCG
*
2058890 AAACCCCTAAACCCT-AACCC
1 AAA-CCC-AAACCCTAAACCG
* *
2058910 TAACCCTAACCCTAAA---
1 AAACCCAAACCCTAAACCG
* * *
2058926 AAACCTAAGCCCTAAACCTAA
1 AAACCCAAACCCTAAACC--G
* *
2058947 AAACCCTAACCCTAAAACCCT
1 AAACCCAAACCCT-AAA-CCG
* *
2058968 AAACGCCTAAAACCT-AACCC
1 AAAC-CC-AAACCCTAAACCG
* *
2058988 TAA-CCAGAACCCT-AACCC
1 AAACCCA-AACCCTAAACCG
*
2059006 TAACCCTAAAAAACCCTAAACCCCG
1 AAACCC----AAACCCTAAA--CCG
* *
2059031 AAA-CCGAACCCTAAACCC
1 AAACCCAAACCCTAAACCG
* **
2059049 TAACCCGGA-CCTAAAACC-
1 AAACCCAAACCCT-AAACCG
*
2059067 TAACCCTAAACCCTAAACCCG
1 AAACCC-AAACCCTAAA-CCG
* *
2059088 AAACCCTAAACACT-AACCT
1 AAACCC-AAACCCTAAACCG
*
2059107 AAA---AAA----AAACCCT
1 AAACCCAAACCCTAAA-CCG
* * *
2059120 AAACCCTAACACTAAACCC
1 AAACCCAAACCCTAAACCG
* *
2059139 AAACCCGAACCCTAAACCCT
1 AAACCCAAACCCTAAA-CCG
*
2059159 AAACCTAAACCCTAAACC-
1 AAACCCAAACCCTAAACCG
*
2059177 AAACCCTAAACCCTAAACACT
1 AAACCC-AAACCCTAAAC-CG
*
2059198 AAACCCTAAAGCCCTAAA--A
1 AAACCC-AAA-CCCTAAACCG
*
2059217 AAACCCTAAACCCTAAAACCCT
1 AAACCC-AAACCCT-AAA-CCG
*
2059239 AAACCCTAAACCCTAAACCC
1 AAACCC-AAACCCTAAACCG
* *
2059259 TAACACCAAACCCTAAACTCCT
1 AAAC-CCAAACCCTAAA--CCG
* * *
2059281 AAACCCTAACCCGAAACCT
1 AAACCCAAACCCTAAACCG
2059300 AAACCCTAAACCCTAAACC-
1 AAACCC-AAACCCTAAACCG
*
2059319 -AACCCTAAACCCTAAACCCT
1 AAACCC-AAACCCTAAA-CCG
* * *
2059339 AAACCCTAAACCCGAACCCT
1 AAACCC-AAACCCTAAACCG
*
2059359 AAACCCTAAA-CCTAAACCT
1 AAACCC-AAACCCTAAACCG
*
2059378 AAACCCTAAACCCTAAACCT
1 AAACCC-AAACCCTAAACCG
*
2059398 AAGACCCGAACCCCTAAACAC-
1 AA-ACCC-AAACCCTAAAC-CG
* *
2059419 TAA---AAACCATAAACCG
1 AAACCCAAACCCTAAACCG
* *
2059435 AAACCTAAACCCTAAACCT
1 AAACCCAAACCCTAAACCG
*
2059454 AAACCTAAACCCCTAAACC-
1 AAACCCAAA-CCCTAAACCG
* *
2059473 ATAACACTAAACCCTAAAAACCCTAA
1 A-AAC-CCAAACCCT--AAA-CC--G
* *
2059499 AAACACAGAAAACCCTAAACCCT
1 AAAC-C--CAAACCCTAAA-CCG
2059522 AAA---AAACCCTAAACCG
1 AAACCCAAACCCTAAACCG
* *
2059538 AAACCCTAAACCCAAAAAAACCC
1 AAACCC-AAACCC---TAAACCG
* *
2059561 TAA-CCTAACCCTAAAACCCCG
1 AAACCCAAACCCT-AAA--CCG
* *
2059582 AAA-CCGAACCCT-AACCC
1 AAACCCAAACCCTAAACCG
* * *
2059599 TAACCCTAACCC-AAACCT
1 AAACCCAAACCCTAAACCG
*
2059617 AAACCCTAAACCCTAAACCCTA
1 AAACCC-AAACCCTAAA-CC-G
*
2059639 AAACCCTAAACCCTAAACCCT
1 AAACCC-AAACCCTAAA-CCG
* *
2059660 AAACCTAAACCCTAAAACCCT
1 AAACCCAAACCCT-AAA-CCG
* *
2059681 AAACCCTAAACCCTACACCC
1 AAACCC-AAACCCTAAACCG
* * * * *
2059701 TAACCTAAAACCTAACCCT
1 AAACCCAAACCCTAAACCG
* *
2059720 AAACCCTAACCCTAAACCCT
1 AAACCCAAACCCTAAA-CCG
*
2059740 AAACCCCAAA-CCTAAACCT
1 AAA-CCCAAACCCTAAACCG
* *
2059759 AAACCCTAACCCTAAACCCT
1 AAACCCAAACCCTAAA-CCG
*
2059779 AAACCCTAACCCTAAACC-
1 AAACCCAAACCCTAAACCG
** *
2059797 CTACCCTAAACCCTAAACCCT
1 AAACCC-AAACCCTAAA-CCG
*
2059818 AAACCCTAACCCTAAACC-
1 AAACCCAAACCCTAAACCG
** * *
2059836 CTACCCTAAACCCGAAAACCCT
1 AAACCC-AAACCC-TAAA-CCG
*
2059858 AAACCCGAAACCCTAAACCCT
1 AAACCC-AAACCCTAAA-CCG
* *
2059879 AAACCCTAACCCTAAACCCCA
1 AAACCCAAACCCTAAA--CCG
*
2059900 AAACCCTAAACCCTAAACCC
1 AAACCC-AAACCCTAAACCG
* * *
2059920 CAACCCCAACCC-AAACCC
1 AAACCCAAACCCTAAACCG
* * *
2059938 AAACCCCAAAACCCCAACCCT
1 AAA-CCC-AAACCCTAAACCG
*
2059959 AAA-CCAAACCCTAAAACCCT
1 AAACCCAAACCCT-AAA-CCG
*
2059979 AAACCC-AACCCTAAACCC
1 AAACCCAAACCCTAAACCG
* * *
2059997 TAACCCTAACCCTAAA--A
1 AAACCCAAACCCTAAACCG
*
2060014 AAACCCGAAAACCCTAAACCCTAA
1 AAACCC--AAACCCTAAA-CC--G
* *
2060038 AAACCCTAAACCCTAACCCT
1 AAACCC-AAACCCTAAACCG
*
2060058 AAACCCTAAACCCTAAACGCCT
1 AAACCC-AAACCCTAAA--CCG
*
2060080 AAACCCTAAACCCTAAACCCT
1 AAACCC-AAACCCTAAA-CCG
* *
2060101 AAACCCTAAACCCTAACCCT
1 AAACCC-AAACCCTAAACCG
*
2060121 AAACCCTAAACCCTAAACCCT
1 AAACCC-AAACCCTAAA-CCG
*
2060142 AAACCCTAAACCCTAACCCG
1 AAACCC-AAACCCTAAACCG
** * *
2060162 ACGCCCGAA-CCTAAACCCT
1 AAACCCAAACCCTAAA-CCG
*
2060181 AAACCCTAACCCTAAACC-
1 AAACCCAAACCCTAAACCG
* * *
2060199 TAACCCAAAACACTAAACCT
1 AAACCC-AAACCCTAAACCG
2060219 AAACCCTAAACCCTAAACCCG
1 AAACCC-AAACCCTAAA-CCG
* *
2060240 AAAAAACCCTAAAACCTAAAACCT
1 ---AAACCC-AAACCCT-AAACCG
*
2060264 AAACCCTAAACCCTAAACCCCT
1 AAACCC-AAACCCTAAA--CCG
* *
2060286 AAACCCTAACCCTAAACCCT
1 AAACCCAAACCCTAAA-CCG
* *
2060306 AAACCCTAAACCCGAAACCCT
1 AAACCC-AAACCCTAAA-CCG
*
2060327 AAACCCTAACCCTAAACCCG
1 AAACCCAAACCCTAAA-CCG
* *
2060347 AAACCTAAA-CCTAAACCCT
1 AAACCCAAACCCTAAA-CCG
*
2060366 AAACCCTAAACCCTAAACCC
1 AAACCC-AAACCCTAAACCG
* *
2060386 TAACCCTAAAACCCTAAACCCT
1 AAACCC--AAACCCTAAA-CCG
* * *
2060408 AAACCTAAACCCAAAACCTA
1 AAACCCAAACCCTAAACC-G
* *
2060428 AAACCTAAA-CCTAAACCT
1 AAACCCAAACCCTAAACCG
*
2060446 AAGACCTAAACCCTAAACCCG
1 AA-ACCCAAACCCTAAA-CCG
2060467 AAACCCTAAACCCTAAACC-
1 AAACCC-AAACCCTAAACCG
* *
2060486 TAACCCTAAACCCCTAAACCC
1 AAACCC-AAA-CCCTAAACCG
* *
2060507 TAACCCTAAACCCTAAAACG
1 AAACCC-AAACCCTAAACCG
* *
2060527 TAAACCCTAAGCCCTAAACCCT
1 -AAACCC-AAACCCTAAA-CCG
2060549 AAACCCTAAACCCTAAACACCCG
1 AAACCC-AAACCCT-AA-A-CCG
*
2060572 TAAACCCTAACCCCTAAACCCG
1 -AAACCC-AAACCCTAAA-CCG
*
2060594 AAAAAACCCTAACCCTAAACC-
1 ---AAACCCAAACCCTAAACCG
* * *
2060615 TAACCTAAACCCTAAACCCT
1 AAACCCAAACCCTAAA-CCG
*
2060635 AAACCCTAAA-CCTAAACCC
1 AAACCC-AAACCCTAAACCG
* * *
2060654 TAA-CCGAACCCTAAACCCT
1 AAACCCAAACCCTAAA-CCG
* * *
2060673 AAACCCTAACCCTAACCCT
1 AAACCCAAACCCTAAACCG
* * *
2060692 AAA-CC--ACCATAACCCT
1 AAACCCAAACCCTAAACCG
2060708 AAACCCTAAACCCTAAACCG
1 AAACCC-AAACCCTAAACCG
* * *
2060728 AAAACACTAACCCTAAACACT
1 -AAACCCAAACCCTAAAC-CG
*
2060749 AAACCCTAAACCCTAAACCCT
1 AAACCC-AAACCCTAAA-CCG
*
2060770 AAACCCTAAACCCTAAACCCT
1 AAACCC-AAACCCTAAA-CCG
*
2060791 AAACCCTAAACCCTAAACCCTAA
1 AAACCC-AAACCCTAAA-CC--G
*
2060814 AAACCCTAAACCCTAAAACCCT
1 AAACCC-AAACCCT-AAA-CCG
2060836 AAACCCTAAACCCTAAACCCG
1 AAACCC-AAACCCTAAA-CCG
** *
2060857 AACACCCTAAACAATAAAACCT
1 AA-ACCC-AAACCCT-AAACCG
* *
2060879 AAA-CTAAACCCTAAACCCT
1 AAACCCAAACCCTAAA-CCG
* * *
2060898 AAACACTAAACCCGAAACCCT
1 AAAC-CCAAACCCTAAA-CCG
2060919 AAACCCTAAACCCTAAAACC-
1 AAACCC-AAACCCT-AAACCG
* *
2060939 AACCCCTAAACCCT-AACCT
1 AAACCC-AAACCCTAAACCG
*
2060958 AAA---AAACCCTAAACCCT
1 AAACCCAAACCCTAAA-CCG
*
2060975 AAACCCTAAACCCTAAACCCTA
1 AAACCC-AAACCCTAAA-CC-G
2060997 AAACCCCTAAACCCTAAACCCG
1 AAA-CCC-AAACCCTAAA-CCG
*
2061019 AAA-CCATAACCCTAAACCCT
1 AAACCCA-AACCCTAAA-CCG
*
2061039 AAACCCTAAAACCCTAAACCCT
1 AAACCC--AAACCCTAAA-CCG
2061061 AAACCCTAAACCCTAAACC-
1 AAACCC-AAACCCTAAACCG
** * *
2061080 CTA--GAAACCCTAAAACCC
1 AAACCCAAACCCT-AAACCG
*
2061098 TAACCCTAAACCCTAAACC-
1 AAACCC-AAACCCTAAACCG
* *
2061117 TAACCCTAAACCCTAAAACCCT
1 AAACCC-AAACCCT-AAA-CCG
* *
2061139 AAA-CCTAACCCTAAAACG
1 AAACCCAAACCCTAAACCG
*
2061157 AAA-CCAGAACCCTAAACCC
1 AAACCCA-AACCCTAAACCG
* *
2061176 TAACCCTAAACCC--AACCT
1 AAACCC-AAACCCTAAACCG
2061194 AAACCCTAAACCCT-AA---
1 AAACCC-AAACCCTAAACCG
*
2061210 AAACCCTAAACCCT-AACCTA
1 AAACCC-AAACCCTAAACC-G
* *
2061230 AAACCTAAACCCTAAACCCT
1 AAACCCAAACCCTAAA-CCG
*
2061250 AAACCCTGAAACCCTAAACACT
1 AAACCC--AAACCCTAAAC-CG
* *
2061272 AAACCCTAAACCCTCAACGCCT
1 AAACCC-AAACCCT-AA-ACCG
* *
2061294 AAACCC-TACCCTAAACCCT
1 AAACCCAAACCCTAAA-CCG
*
2061313 AAACCCCCTAAA-CCTAAACCCT
1 AAA--CCC-AAACCCTAAA-CCG
* * *
2061335 ACACCTAAGCCCTAAACCG
1 AAACCCAAACCCTAAACCG
* *
2061354 AAAAACCCGAAACACTAAACCCT
1 --AAACCC-AAACCCTAAA-CCG
*
2061377 AAACCCTAAAAACCCTAAACCCT
1 AAACCC---AAACCCTAAA-CCG
2061400 AAACCCAAA-CCTAAACCCG
1 AAACCCAAACCCTAAA-CCG
*
2061419 AAACCCTAACCCTAAACCG
1 AAACCCAAACCCTAAACCG
* *** *
2061438 CTAACCCATAAACAGAAAACCT
1 -AAACCC--AAACCCTAAACCG
*
2061460 AAA---AAACCCTAAACACT
1 AAACCCAAACCCTAAAC-CG
*
2061477 AAACCCTAAACCCTAAACCC
1 AAACCC-AAACCCTAAACCG
* *
2061497 TAACCCTAAACCCTAAACCC
1 AAACCC-AAACCCTAAACCG
* *
2061517 TAACCCTAAA-CCTAAACCC
1 AAACCC-AAACCCTAAACCG
*
2061536 AAACCCTAAACCCTAAAACCCT
1 AAACCC-AAACCCT-AAA-CCG
*** *
2061558 AAAAAAAAACCCTAAACCCT
1 AAACCCAAACCCTAAA-CCG
2061578 AAACCCTAAACCCTAAA---
1 AAACCC-AAACCCTAAACCG
*
2061595 AAACCCTAAA-CCTAAACCCT
1 AAACCC-AAACCCTAAA-CCG
* *
2061615 AAACCTAAACACCTAACCCG
1 AAACCCAAAC-CCTAAACCG
*
2061635 AAACCCTAAACCCT-AACCT
1 AAACCC-AAACCCTAAACCG
* *
2061654 AAACACCTAAACCATAAACCCT
1 AAAC-CC-AAACCCTAAA-CCG
*
2061676 AAACCCTAAACCCTAAACCT
1 AAACCC-AAACCCTAAACCG
* *
2061696 AAACCCTAACCCTAAAACCCTAA
1 AAACCCAAACCCT-AAA-CC--G
*
2061719 AAACCCGAAACCCTAAACCCT
1 AAACCC-AAACCCTAAA-CCG
* *
2061740 AAACCCTAACCCGAAA-C-
1 AAACCCAAACCCTAAACCG
*
2061757 AAACCCTAAACCCTAACCCG
1 AAACCC-AAACCCTAAACCG
*
2061777 AAACCCTAAACCCTAAACACCT
1 AAACCC-AAACCCT-AA-ACCG
*
2061799 AAACCCTAAACGCCTAAAACCT
1 AAACCC-AAAC-CCT-AAACCG
* *
2061821 AAACCGAAACCCTAAACCCT
1 AAACCCAAACCCTAAA-CCG
*
2061841 AAACCCTAAACCCTAAACCCT
1 AAACCC-AAACCCTAAA-CCG
*
2061862 AAACCCTAAACCCTAAACCCT
1 AAACCC-AAACCCTAAA-CCG
2061883 AAACCCTAAACCCTAAAACC-
1 AAACCC-AAACCCT-AAACCG
* *
2061903 TAACCCTAAACCCTAAACCC
1 AAACCC-AAACCCTAAACCG
**
2061923 AAA---AAACCGAAAAAAACCAG
1 AAACCCAAACC---CTAAACC-G
* * *
2061943 CAACCCTAACCCTAAACCCT
1 AAACCCAAACCCTAAA-CCG
* *
2061963 AAACCCTAACCCTAAACCT
1 AAACCCAAACCCTAAACCG
*
2061982 AAACCCTAAA-CCTAAACCCT
1 AAACCC-AAACCCTAAA-CCG
* *
2062002 AAACCTAAACCCTAAAACCCT
1 AAACCCAAACCCT-AAA-CCG
* *
2062023 AAA--AAAACCCTAAACCCT
1 AAACCCAAACCCTAAA-CCG
*
2062041 AAACCCTAAACCC-GAACCG
1 AAACCC-AAACCCTAAACCG
* *
2062060 AAACCTAAACCCTAAACCCT
1 AAACCCAAACCCTAAA-CCG
*
2062080 AAA--AAAACCCTAAGACC-
1 AAACCCAAACCCTAA-ACCG
* *
2062097 TAACCCTAAGAACCCTAAAACACT
1 AAACCC--A-AACCCT-AAAC-CG
* * *
2062121 AAACCCTAACCCGAAACCT
1 AAACCCAAACCCTAAACCG
*
2062140 AAACCCTAAACACT-AACC-
1 AAACCC-AAACCCTAAACCG
* * *
2062158 ATAAACCTAACCCTAAACCCT
1 A-AACCCAAACCCTAAA-CCG
* *
2062179 AAACCCTAACCCTAAACCCT
1 AAACCCAAACCCTAAA-CCG
2062199 AAACCCGAAACCCTAAA---
1 AAACCC-AAACCCTAAACCG
* * *
2062216 AAA-CCTAA-CCGAAACGCCT
1 AAACCCAAACCCTAAA--CCG
*
2062235 AAACCCTAAACCCTAAACCCT
1 AAACCC-AAACCCTAAA-CCG
* *
2062256 AAA-CCAACCCCTAAACCCT
1 AAACCCAAACCCTAAA-CCG
*
2062275 AAACCCTAAACCCTAAACCTA
1 AAACCC-AAACCCTAAACC-G
*
2062296 AAACCCCTGAAACCCTAAACCATA
1 AAA-CCC--AAACCCTAAACC--G
* *
2062320 AAACCCTGAA-CCTAAACCCTA
1 AAACCC-AAACCCTAAA-CC-G
*
2062341 AAACCTAAAACCCTAAACCCG
1 AAACC-CAAACCCTAAA-CCG
* *
2062362 AAACCCTAACCCTAAACCCT
1 AAACCCAAACCCTAAA-CCG
*
2062382 AAACCCTAAACCATAAACCAG
1 AAACCC-AAACCCTAAACC-G
* * *
2062403 AAAACCTAACCCTAAAAACCT
1 AAACCCAAACCCT--AAACCG
* *
2062424 AAACCCTAACCCTAAACCCCT
1 AAACCCAAACCCTAAA--CCG
* *
2062445 AAACCTAAACCCTAAACCT
1 AAACCCAAACCCTAAACCG
* *
2062464 AAACCCTAACCCTAAACCCTAA
1 AAACCCAAACCCTAAA-CC--G
* *
2062486 AAACCCTAAACCCAGAAACCCT
1 AAACCC-AAACCC-TAAA-CCG
* *
2062508 AAACACCTAAACCC-AACCCT
1 AAAC-CC-AAACCCTAAACCG
2062528 AAACCCTAAAACCCTAAACC-
1 AAACCC--AAACCCTAAACCG
** *
2062548 CTACCCTAAACCCTAAACCC
1 AAACCC-AAACCCTAAACCG
* *
2062568 TAACCTAAAACCCTAAA-CG
1 AAACC-CAAACCCTAAACCG
* * *
2062587 AAACCAAAACCC-AACCCC
1 AAACCCAAACCCTAAACCG
*
2062605 AAACCCCAACCC-AAACCG
1 AAACCCAAACCCTAAACCG
* *
2062623 CCAACCCAAACCC--AACCC
1 -AAACCCAAACCCTAAACCG
* * *
2062641 CAA-CCACACCC-AAACCCC
1 AAACCCAAACCCTAAA-CCG
* *
2062659 AAACCCCAAACCC-AACCCC
1 AAA-CCCAAACCCTAAACCG
* * *
2062678 AAACACC--ACCCCAACCCCC
1 AAAC-CCAAACCCTAA-ACCG
2062697 AAA-CCAAACCC-AAACC-
1 AAACCCAAACCCTAAACCG
*
2062713 AAACCCCAAACCCCAAACCCG
1 AAA-CCCAAACCCTAAA-CCG
* * *
2062734 CAACCCCAAAACCCCAAACCCC
1 -AAACCC-AAACCCTAAA-CCG
* *
2062756 AAACCCCAAAACCCCAAACACC
1 AAA-CCC-AAACCCTAAAC-CG
* *
2062778 AAACCCCAAAAACCCCCAAACCCC
1 AAA-CCC--AAA-CCCTAAA-CCG
*
2062802 AAACCCCAAACCCTAAAACCTA
1 AAA-CCCAAACCCT-AAACC-G
* * *
2062824 AAACCCTAAACCCGAACCCT
1 AAACCC-AAACCCTAAACCG
*
2062844 AAACCC-AACCCTAAACCT
1 AAACCCAAACCCTAAACCG
*
2062862 AAACCCTAAACCCTAAACACT
1 AAACCC-AAACCCTAAAC-CG
* *
2062883 AAACCCTAACCCTAAACCCT
1 AAACCCAAACCCTAAA-CCG
*
2062903 AAACCCTAAAACCCTAAACCCT
1 AAACCC--AAACCCTAAA-CCG
*
2062925 AAACCCTAAAACCCTAAACCCT
1 AAACCC--AAACCCTAAA-CCG
* * *
2062947 AAAACCTAACCCTAAAACCC
1 AAACCCAAACCCT-AAACCG
* * *
2062967 TAACCCTAAAACCCTAACCCATA
1 AAACCC--AAACCCTAAACC--G
*
2062990 AAACCCTAAA-CCTAAACCCT
1 AAACCC-AAACCCTAAA-CCG
* *
2063010 AAACCTAAAACCCTAAACCCT
1 AAACC-CAAACCCTAAA-CCG
**
2063031 AAACCCTAAACCCTAAA-AA
1 AAACCC-AAACCCTAAACCG
2063050 AAACCCTAAACCCTAAACC-
1 AAACCC-AAACCCTAAACCG
*
2063069 -AACCCTAAACCCTAAACCCT
1 AAACCC-AAACCCTAAA-CCG
*
2063089 AAACCCTAAACCCTAAAACCT
1 AAACCC-AAACCCT-AAACCG
*
2063110 AAACCCTAAACCCTAAACCT
1 AAACCC-AAACCCTAAACCG
* * * *
2063130 AAACACTAACCCTAACCCTA
1 AAACCCAAACCCTAAACC-G
** *
2063150 AAACCTGAACCCTAAACCCCT
1 AAACCCAAACCCTAAA--CCG
* *
2063171 AAACCTAAAACCCTAAACCC
1 AAACC-CAAACCCTAAACCG
* *
2063191 TAACCCTAAA-CCTAAACGCCAT
1 AAACCC-AAACCCTAAA--CC-G
* * *
2063213 AAACCTAAACCCTAACCCCT
1 AAACCCAAACCCTAA-ACCG
* * *
2063233 AAACCTAAACCTATAAACCCTA
1 AAACCCAAACC-CTAAA-CC-G
**
2063255 AAACCCTAAACCCTAACACTA
1 AAACCC-AAACCCTAA-ACCG
*
2063276 AAACCCTAAA-CC-AAAAC-
1 AAACCC-AAACCCTAAACCG
* * * *
2063293 TAACCCTAACCCTAACCCT
1 AAACCCAAACCCTAAACCG
2063312 AAACCCTAAACCCTAAACCCG
1 AAACCC-AAACCCTAAA-CCG
2063333 AAACCCTAAACCCT--ACCG
1 AAACCC-AAACCCTAAACCG
* * *
2063351 AAACCCTAAACCCGAACCCT
1 AAACCC-AAACCCTAAACCG
* *
2063371 AAACCCTAACCCTAAACCCT
1 AAACCCAAACCCTAAA-CCG
* *
2063391 AAACCTAACGACACCTAAAACCCT
1 AAACCCAA--AC-CCT-AAA-CCG
**** *
2063415 AAA--CAAATAAAAAGACCCT
1 AAACCCAAACCCTAA-A-CCG
* * *
2063434 AAACCCTAACCCTAACCCT
1 AAACCCAAACCCTAAACCG
* *
2063453 AAACCCTAACCCTAAACCCT
1 AAACCCAAACCCTAAA-CCG
**
2063473 AAACCCTAAACCCTAAACAT
1 AAACCC-AAACCCTAAACCG
* *
2063493 AAACCCTAACCC-AAACCCT
1 AAACCCAAACCCTAAA-CCG
* *
2063512 AAACCCTAACCCTAAACCCT
1 AAACCCAAACCCTAAA-CCG
*
2063532 AAACCCTAAACCCTAAACGCC
1 AAACCC-AAACCCTAAAC-CG
*
2063553 AAACCCCTAAACCCTAAACACTT
1 AAA-CCC-AAACCCTAAAC-C-G
* *
2063576 AAA-TC--ACCCTAAACCCT
1 AAACCCAAACCCTAAA-CCG
* *
2063593 AAACCCGAAAACCTAAACCCT
1 AAACCC-AAACCCTAAA-CCG
*
2063614 AAACCCTAA-CCTAAA-C-
1 AAACCCAAACCCTAAACCG
*
2063630 ACAACCCTAACCCTAAA---
1 A-AACCCAAACCCTAAACCG
*
2063647 AAACCCTAAACCCTAACCCG
1 AAACCC-AAACCCTAAACCG
* *
2063667 AAACCATAAACCCTAAAACCC
1 AAACC-CAAACCCT-AAACCG
* * *
2063688 TAACCCTAAACCATAAACCCT
1 AAACCC-AAACCCTAAA-CCG
2063709 AAACCCTAAACCCTAAACC-
1 AAACCC-AAACCCTAAACCG
*
2063728 AAACCTAAACCGCTAAACCG
1 AAACCCAAACC-CTAAACCG
2063748 CTAAACCCTAAACCCCTAAACCCG
1 --AAACCC-AAA-CCCTAAA-CCG
2063772 AAA
1 AAA
2063775 ACATAACCCG
Statistics
Matches: 5508, Mismatches: 736, Indels: 1216
0.74 0.10 0.16
Matches are distributed among these distances:
12 2 0.00
13 6 0.00
14 15 0.00
15 28 0.01
16 128 0.02
17 162 0.03
18 469 0.09
19 897 0.16
20 1381 0.25
21 1313 0.24
22 676 0.12
23 247 0.04
24 119 0.02
25 46 0.01
26 7 0.00
27 7 0.00
28 5 0.00
ACGTcount: A:0.45, C:0.41, G:0.02, T:0.12
Consensus pattern (19 bp):
AAACCCAAACCCTAAACCG
Found at i:2059495 original size:9 final size:9
Alignment explanation
Indices: 2059481--2059534 Score: 60
Period size: 9 Copynumber: 6.1 Consensus size: 9
2059471 CCATAACACT
2059481 AAACCCTAA
1 AAACCCTAA
2059490 AAACCCTAA
1 AAACCCTAA
*
2059499 AAACAC-AGA
1 AAACCCTA-A
2059508 AAACCCT--
1 AAACCCTAA
2059515 AAACCCTAAA
1 AAACCCT-AA
2059525 AAACCCTAA
1 AAACCCTAA
2059534 A
1 A
2059535 CCGAAACCCT
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
7 7 0.18
8 1 0.03
9 23 0.61
10 7 0.18
ACGTcount: A:0.57, C:0.31, G:0.02, T:0.09
Consensus pattern (9 bp):
AAACCCTAA
Found at i:2063816 original size:15 final size:15
Alignment explanation
Indices: 2063796--2063826 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
2063786 ACATAACCCT
2063796 AAACCCTAACACTAA
1 AAACCCTAACACTAA
*
2063811 AAACCCTAACGCTAA
1 AAACCCTAACACTAA
2063826 A
1 A
2063827 CCCGAAACCG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.52, C:0.32, G:0.03, T:0.13
Consensus pattern (15 bp):
AAACCCTAACACTAA
Found at i:2063855 original size:8 final size:8
Alignment explanation
Indices: 2063842--2063922 Score: 66
Period size: 8 Copynumber: 10.4 Consensus size: 8
2063832 AACCGGACTA
2063842 AAACCCGT
1 AAACCCGT
2063850 AAACCCG-
1 AAACCCGT
2063857 AAACCCGT
1 AAACCCGT
2063865 AAACCCGT
1 AAACCCGT
*
2063873 -AACTCCGAAC
1 AAAC-CCG--T
2063883 AAACCCGAT
1 AAACCCG-T
2063892 AAA--CG-
1 AAACCCGT
*
2063897 AAACCCGA
1 AAACCCGT
2063905 AAACCCG-
1 AAACCCGT
2063912 AAACCCGT
1 AAACCCGT
2063920 AAA
1 AAA
2063923 ACCCTAACAA
Statistics
Matches: 62, Mismatches: 2, Indels: 18
0.76 0.02 0.22
Matches are distributed among these distances:
5 3 0.05
7 21 0.34
8 28 0.45
9 4 0.06
10 3 0.05
11 3 0.05
ACGTcount: A:0.44, C:0.36, G:0.12, T:0.07
Consensus pattern (8 bp):
AAACCCGT
Found at i:2063862 original size:15 final size:15
Alignment explanation
Indices: 2063842--2063922 Score: 77
Period size: 15 Copynumber: 5.7 Consensus size: 15
2063832 AACCGGACTA
2063842 AAACCCGTAAACCCG
1 AAACCCGTAAACCCG
2063857 AAACCCGTAAACCCG
1 AAACCCGTAAACCCG
*
2063872 TAACTCCG--AA--C-
1 AAAC-CCGTAAACCCG
2063883 AAACCCGATAAA--CG
1 AAACCCG-TAAACCCG
*
2063897 AAACCCGAAAACCCG
1 AAACCCGTAAACCCG
2063912 AAACCCGTAAA
1 AAACCCGTAAA
2063923 ACCCTAACAA
Statistics
Matches: 55, Mismatches: 4, Indels: 14
0.75 0.05 0.19
Matches are distributed among these distances:
10 3 0.05
11 3 0.05
12 1 0.02
13 6 0.11
14 9 0.16
15 30 0.55
16 3 0.05
ACGTcount: A:0.44, C:0.36, G:0.12, T:0.07
Consensus pattern (15 bp):
AAACCCGTAAACCCG
Found at i:2063942 original size:55 final size:51
Alignment explanation
Indices: 2063842--2064009 Score: 126
Period size: 55 Copynumber: 3.1 Consensus size: 51
2063832 AACCGGACTA
* * *
2063842 AAACCCGTAAACCCGAAACCCGTAAACCCGTAACTCCGAACAAACCCGATAAA-CG
1 AAACCCGAAAACCCGAAACCCGTAAACCC-TAACCCCG-A-AAA-CC-ATAAACCC
2063897 AAACCCGAAAACCCGAAACCCGTAAAACCCTAACAAACCCG-AAACCATAAACCC
1 AAACCCGAAAACCCGAAACCCGT-AAACCCTAAC---CCCGAAAACCATAAACCC
* * * ** *
2063951 TAACCCTAAAAACCCTAAACCCG-AAACCCTAACCCTAAAAAACCCTAAACCC
1 AAACCC-GAAAACCCGAAACCCGTAAACCCTAACCC-CGAAAACCATAAACCC
2064003 TAAACCC
1 -AAACCC
2064010 AACCCCAAAC
Statistics
Matches: 94, Mismatches: 10, Indels: 20
0.76 0.08 0.16
Matches are distributed among these distances:
50 2 0.02
52 12 0.13
53 20 0.21
54 8 0.09
55 43 0.46
56 6 0.06
58 3 0.03
ACGTcount: A:0.45, C:0.39, G:0.07, T:0.09
Consensus pattern (51 bp):
AAACCCGAAAACCCGAAACCCGTAAACCCTAACCCCGAAAACCATAAACCC
Found at i:2063958 original size:30 final size:29
Alignment explanation
Indices: 2063922--2064035 Score: 135
Period size: 29 Copynumber: 4.0 Consensus size: 29
2063912 AAACCCGTAA
* *
2063922 AACCCTAACAAACCCGAAACCATAAACCCT
1 AACCCTAA-AAACCCTAAACCCTAAACCCT
*
2063952 AACCCTAAAAACCCTAAACCCGAAACCCT
1 AACCCTAAAAACCCTAAACCCTAAACCCT
2063981 AACCCTAAAAAACCCTAAACCCTAAACCC-
1 AACCCT-AAAAACCCTAAACCCTAAACCCT
* * *
2064010 AACCC--CAAACCCCAAACCCCAAACCC
1 AACCCTAAAAACCCTAAACCCTAAACCC
2064036 ACACCCCAAC
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
26 18 0.24
29 29 0.38
30 29 0.38
ACGTcount: A:0.46, C:0.45, G:0.02, T:0.08
Consensus pattern (29 bp):
AACCCTAAAAACCCTAAACCCTAAACCCT
Found at i:2063969 original size:22 final size:23
Alignment explanation
Indices: 2063938--2063982 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
2063928 AACAAACCCG
*
2063938 AAACCATAAACCC-TAACCCTAA
1 AAACCATAAACCCGAAACCCTAA
*
2063960 AAACCCTAAACCCGAAACCCTAA
1 AAACCATAAACCCGAAACCCTAA
2063983 CCCTAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.49, C:0.38, G:0.02, T:0.11
Consensus pattern (23 bp):
AAACCATAAACCCGAAACCCTAA
Found at i:2064103 original size:6 final size:7
Alignment explanation
Indices: 2056900--2064101 Score: 6332
Period size: 7 Copynumber: 1049.1 Consensus size: 7
2056890 CACCCGAACA
2056900 CTAAACC
1 CTAAACC
2056907 CTAAACC
1 CTAAACC
2056914 CTAAA-C
1 CTAAACC
*
2056920 CTACACC
1 CTAAACC
2056927 CTAAACC
1 CTAAACC
2056934 CTAAA-C
1 CTAAACC
2056940 CTAAACC
1 CTAAACC
2056947 CTAAACC
1 CTAAACC
2056954 CTAAAAAACC
1 CT---AAACC
2056964 CTAAACC
1 CTAAACC
2056971 CTAAA-C
1 CTAAACC
*
2056977 CTAAAAC
1 CTAAACC
2056984 CTAAA-C
1 CTAAACC
2056990 CTAAACC
1 CTAAACC
2056997 CTAAAGCC
1 CTAAA-CC
2057005 CTAAA-C
1 CTAAACC
2057011 CTAAACC
1 CTAAACC
*
2057018 CGAAACC
1 CTAAACC
*
2057025 CTCAACC
1 CTAAACC
*
2057032 C-CAACAC
1 CTAAAC-C
*
2057039 CGAAACC
1 CTAAACC
2057046 CTAAACC
1 CTAAACC
*
2057053 ATAAA-C
1 CTAAACC
*
2057059 CGAAA--
1 CTAAACC
**
2057064 AAAAACGC
1 CTAAAC-C
2057072 CTAAA-C
1 CTAAACC
2057078 CTAAACC
1 CTAAACC
2057085 CTAAACC
1 CTAAACC
2057092 CTAAA-C
1 CTAAACC
2057098 CTAAAAACC
1 CT--AAACC
2057107 CTAAACC
1 CTAAACC
2057114 CT-AACC
1 CTAAACC
2057120 CTAAACC
1 CTAAACC
2057127 CTAAACC
1 CTAAACC
2057134 CTAAAACC
1 CT-AAACC
*
2057142 C-AAACA
1 CTAAACC
2057148 CTAAACC
1 CTAAACC
2057155 CTAAACC
1 CTAAACC
2057162 CTAAACC
1 CTAAACC
2057169 CTAAACC
1 CTAAACC
*
2057176 CAAAACC
1 CTAAACC
2057183 CTAAA--
1 CTAAACC
*
2057188 -AAAACC
1 CTAAACC
*
2057194 CT-AACTA
1 CTAAAC-C
2057201 CT-AA-C
1 CTAAACC
2057206 CTAAACC
1 CTAAACC
2057213 CTAAACC
1 CTAAACC
2057220 CTAAACC
1 CTAAACC
*
2057227 CTGAACC
1 CTAAACC
2057234 CTAAACAC
1 CTAAAC-C
* *
2057242 CGAACCC
1 CTAAACC
2057249 CTAAAACC
1 CT-AAACC
2057257 C-AAACC
1 CTAAACC
2057263 C-AAA-C
1 CTAAACC
*
2057268 CGAAACC
1 CTAAACC
2057275 CT-AACC
1 CTAAACC
2057281 CTAAACCC
1 CTAAA-CC
2057289 CTAAACC
1 CTAAACC
2057296 CTAAA-C
1 CTAAACC
*
2057302 CGAAACGC
1 CTAAAC-C
2057310 CTAAAACCC
1 CT-AAA-CC
*
2057319 CGAAACC
1 CTAAACC
2057326 CT-AACC
1 CTAAACC
2057332 CT-AACC
1 CTAAACC
2057338 CTAACAACC
1 CT-A-AACC
2057347 CTAAACC
1 CTAAACC
2057354 CTAAACC
1 CTAAACC
**
2057361 GAAAACC
1 CTAAACC
*
2057368 ATAAACC
1 CTAAACC
2057375 CT-AA-C
1 CTAAACC
2057380 CT-AA-C
1 CTAAACC
2057385 CTAAAACC
1 CT-AAACC
*
2057393 CGAAACCTAC
1 CTAAA-C--C
*
2057403 CTAAAAC
1 CTAAACC
2057410 CTAAACC
1 CTAAACC
2057417 CTAAACC
1 CTAAACC
*
2057424 CTAAAAAC
1 CT-AAACC
*
2057432 C-GAA-C
1 CTAAACC
*
2057437 CTAAACA
1 CTAAACC
2057444 CTAAA-C
1 CTAAACC
*
2057450 C-ATACC
1 CTAAACC
2057456 CTAAACC
1 CTAAACC
2057463 CTAAACC
1 CTAAACC
2057470 CTAAACC
1 CTAAACC
*
2057477 CTAAAAC
1 CTAAACC
2057484 CTAAACC
1 CTAAACC
2057491 CTAAA-C
1 CTAAACC
2057497 CTAAACC
1 CTAAACC
2057504 CTAAA-C
1 CTAAACC
2057510 CT-AACC
1 CTAAACC
2057516 CTAAACC
1 CTAAACC
*
2057523 CGAAACC
1 CTAAACC
2057530 CT-AACC
1 CTAAACC
2057536 CTAAA-C
1 CTAAACC
**
2057542 CTAAAAA
1 CTAAACC
2057549 C-AAACCC
1 CTAAA-CC
2057556 CTAAAACC
1 CT-AAACC
*
2057564 C-GAACC
1 CTAAACC
2057570 CTAAACC
1 CTAAACC
2057577 CTAAACC
1 CTAAACC
2057584 CTAAACC
1 CTAAACC
2057591 CTAAACC
1 CTAAACC
2057598 CTAAACC
1 CTAAACC
2057605 CTAAAAACC
1 CT--AAACC
2057614 CTAAA-C
1 CTAAACC
*
2057620 CTAAACA
1 CTAAACC
2057627 CTAAACC
1 CTAAACC
2057634 CT-AACC
1 CTAAACC
2057640 CTAAACC
1 CTAAACC
2057647 CTAAA-C
1 CTAAACC
2057653 CTAAACC
1 CTAAACC
*
2057660 CAAAAACC
1 C-TAAACC
2057668 CTAAACC
1 CTAAACC
*
2057675 ATAAACC
1 CTAAACC
2057682 CT-AACC
1 CTAAACC
2057688 CTAAACC
1 CTAAACC
2057695 CT-AACC
1 CTAAACC
2057701 CTAAACC
1 CTAAACC
2057708 CT-AACC
1 CTAAACC
2057714 C--AACC
1 CTAAACC
2057719 CTAAACC
1 CTAAACC
*
2057726 C-GAACC
1 CTAAACC
*
2057732 C-AACCC
1 CTAAACC
2057738 CTAAACC
1 CTAAACC
*
2057745 CT-AACA
1 CTAAACC
2057751 CTAAAACC
1 CT-AAACC
2057759 CTAAACC
1 CTAAACC
*
2057766 CTAAAAC
1 CTAAACC
2057773 CTAAA-C
1 CTAAACC
* *
2057779 CAAAAAC
1 CTAAACC
2057786 CTAAACC
1 CTAAACC
2057793 CT-AACC
1 CTAAACC
2057799 CT-AACC
1 CTAAACC
2057805 CGTAAAAACC
1 C-T--AAACC
2057815 CTAAAACC
1 CT-AAACC
2057823 CTAAACC
1 CTAAACC
2057830 CTAAACC
1 CTAAACC
*
2057837 ATAAACC
1 CTAAACC
2057844 CTAAACC
1 CTAAACC
2057851 CTAAAACC
1 CT-AAACC
2057859 CTAAACC
1 CTAAACC
2057866 CTAAA-C
1 CTAAACC
2057872 CTAAACC
1 CTAAACC
2057879 CTAAACC
1 CTAAACC
2057886 CTAAAACC
1 CT-AAACC
2057894 CTAAACC
1 CTAAACC
2057901 CTAAACC
1 CTAAACC
2057908 CTAAACC
1 CTAAACC
2057915 CT-AACC
1 CTAAACC
*
2057921 CGAAACC
1 CTAAACC
2057928 CTAAACC
1 CTAAACC
2057935 CTAAACC
1 CTAAACC
*
2057942 CGAAACC
1 CTAAACC
2057949 CTAAA-C
1 CTAAACC
2057955 CT-AACC
1 CTAAACC
2057961 CTAAACC
1 CTAAACC
*
2057968 CGAAACC
1 CTAAACC
2057975 CTAAACC
1 CTAAACC
2057982 CTAAACC
1 CTAAACC
*
2057989 CGAAAACC
1 C-TAAACC
2057997 CTTAAACC
1 C-TAAACC
*
2058005 CGAAACC
1 CTAAACC
2058012 CTAAACC
1 CTAAACC
*
2058019 CAAAAACC
1 C-TAAACC
2058027 CTAAACCACC
1 CT-AA--ACC
2058037 CTAAACC
1 CTAAACC
*
2058044 CGAAACC
1 CTAAACC
2058051 CT-AACC
1 CTAAACC
*
2058057 CGAAACC
1 CTAAACC
2058064 CTAAACC
1 CTAAACC
2058071 CTAAACC
1 CTAAACC
2058078 CT-AACC
1 CTAAACC
*
2058084 CGAAACC
1 CTAAACC
2058091 CTAAACC
1 CTAAACC
2058098 CTAAAAACC
1 CT--AAACC
2058107 CTAAACC
1 CTAAACC
2058114 CTAAA-C
1 CTAAACC
2058120 CT-AACC
1 CTAAACC
2058126 C-AAACC
1 CTAAACC
2058132 CTAAACC
1 CTAAACC
2058139 CTAAA-C
1 CTAAACC
2058145 CTAAACC
1 CTAAACC
* *
2058152 CGACACC
1 CTAAACC
*
2058159 CGAAACC
1 CTAAACC
2058166 CTAAA-C
1 CTAAACC
2058172 CTAAACC
1 CTAAACC
2058179 CT-AACC
1 CTAAACC
2058185 CTAAA-C
1 CTAAACC
2058191 CT-AACC
1 CTAAACC
2058197 CTAAACC
1 CTAAACC
* *
2058204 CAAAAAACA
1 C--TAAACC
2058213 CTAAACC
1 CTAAACC
* *
2058220 C-GAACA
1 CTAAACC
2058226 CT-AACC
1 CTAAACC
2058232 CT-AACC
1 CTAAACC
* **
2058238 CTGAAGA
1 CTAAACC
2058245 C-AAA-C
1 CTAAACC
2058250 CT-AACC
1 CTAAACC
*
2058256 CGAAACC
1 CTAAACC
*
2058263 CGAAACC
1 CTAAACC
2058270 CTAAA-C
1 CTAAACC
2058276 CTAAACC
1 CTAAACC
* **
2058283 CGAAAAAG
1 C-TAAACC
** **
2058291 AAAAAAA
1 CTAAACC
**
2058298 AAAAACC
1 CTAAACC
2058305 CTAAAAACC
1 CT--AAACC
2058314 CTAAAAACC
1 CT--AAACC
2058323 CT-AA-C
1 CTAAACC
*
2058328 CGAAACC
1 CTAAACC
2058335 CTAAACC
1 CTAAACC
2058342 CTAAACC
1 CTAAACC
*
2058349 CTAAAAC
1 CTAAACC
2058356 CTAAAAACC
1 CT--AAACC
*
2058365 CT--ACA
1 CTAAACC
2058370 CTAAACC
1 CTAAACC
2058377 CTAAACC
1 CTAAACC
2058384 CTAAACC
1 CTAAACC
* *
2058391 CGAAAACA
1 C-TAAACC
2058399 CT-AACC
1 CTAAACC
2058405 CTAAACC
1 CTAAACC
2058412 CTAAACC
1 CTAAACC
2058419 CTAAA-C
1 CTAAACC
*
2058425 CT-AACG
1 CTAAACC
2058431 CTAAACC
1 CTAAACC
2058438 C-AAACC
1 CTAAACC
2058444 CTAAACC
1 CTAAACC
2058451 CTAAACC
1 CTAAACC
2058458 CTAAACC
1 CTAAACC
2058465 CTAAACC
1 CTAAACC
2058472 CT-AACC
1 CTAAACC
*
2058478 CTAAACA
1 CTAAACC
2058485 CTAAACC
1 CTAAACC
2058492 C-AAACC
1 CTAAACC
2058498 CT-AACC
1 CTAAACC
2058504 CTATAAACAC
1 C--TAAAC-C
2058514 ACTAAAACC
1 -CT-AAACC
2058523 CTAAACC
1 CTAAACC
2058530 CTAAACC
1 CTAAACC
*
2058537 CTAAACA
1 CTAAACC
2058544 CTAAACGC
1 CTAAAC-C
2058552 CTAAACC
1 CTAAACC
2058559 CT-AACC
1 CTAAACC
2058565 CT-AA-C
1 CTAAACC
2058570 CTAAACC
1 CTAAACC
2058577 C-AAACAC
1 CTAAAC-C
*
2058584 CGAAACC
1 CTAAACC
2058591 CTAAACC
1 CTAAACC
2058598 CGTAAACC
1 C-TAAACC
2058606 CTAAACC
1 CTAAACC
2058613 ACTAAA-C
1 -CTAAACC
*
2058620 CGAAACC
1 CTAAACC
2058627 CTAAACC
1 CTAAACC
2058634 C--AACC
1 CTAAACC
*
2058639 AT-AACC
1 CTAAACC
*
2058645 CTAACCC
1 CTAAACC
2058652 CT--ACC
1 CTAAACC
*
2058657 ATAAACCC
1 CTAAA-CC
2058665 CTAAACC
1 CTAAACC
2058672 CT-AA-C
1 CTAAACC
*
2058677 CGAAACC
1 CTAAACC
2058684 CTAAACC
1 CTAAACC
2058691 CTAAAGCC
1 CTAAA-CC
2058699 C-AAACC
1 CTAAACC
2058705 CTAAACCC
1 CTAAA-CC
2058713 CTAAACC
1 CTAAACC
2058720 CTAAACC
1 CTAAACC
2058727 CTAAACC
1 CTAAACC
2058734 C-AAACC
1 CTAAACC
2058740 CTAAACC
1 CTAAACC
2058747 CTAAA-C
1 CTAAACC
2058753 CTAAACC
1 CTAAACC
2058760 CTAAAAATCC
1 CT--AAA-CC
*
2058770 ACGAAACC
1 -CTAAACC
*
2058778 CT-AACA
1 CTAAACC
2058784 CTAAACC
1 CTAAACC
2058791 CTAAACC
1 CTAAACC
2058798 CTAAACC
1 CTAAACC
2058805 CTAAACC
1 CTAAACC
2058812 CTAACCAACC
1 CT-A--AACC
*
2058822 CTAAACA
1 CTAAACC
*
2058829 C-AAACA
1 CTAAACC
2058835 CTAAACC
1 CTAAACC
2058842 CTAAACC
1 CTAAACC
2058849 CTAAACC
1 CTAAACC
2058856 CTAAACC
1 CTAAACC
*
2058863 CT-AACA
1 CTAAACC
*
2058869 ATAAACC
1 CTAAACC
2058876 CT--ACC
1 CTAAACC
2058881 CTAAACC
1 CTAAACC
2058888 CTAAACCC
1 CTAAA-CC
2058896 CTAAACC
1 CTAAACC
2058903 CT-AACC
1 CTAAACC
2058909 CT-AACC
1 CTAAACC
2058915 CT-AACC
1 CTAAACC
*
2058921 CTAAAAAAC
1 CT--AAACC
*
2058930 CTAAGCC
1 CTAAACC
2058937 CTAAA-C
1 CTAAACC
2058943 CTAAAAACC
1 CT--AAACC
2058952 CT-AACC
1 CTAAACC
2058958 CTAAAACC
1 CT-AAACC
2058966 CTAAACGC
1 CTAAAC-C
*
2058974 CTAAAAC
1 CTAAACC
2058981 CT-AACC
1 CTAAACC
2058987 CT-AA-C
1 CTAAACC
2058992 C-AGAACC
1 CTA-AACC
2058999 CT-AACC
1 CTAAACC
2059005 CT-AACC
1 CTAAACC
2059011 CTAAAAAACC
1 CT---AAACC
2059021 CTAAACCC
1 CTAAA-CC
*
2059029 CGAAA-C
1 CTAAACC
*
2059035 C-GAACC
1 CTAAACC
2059041 CTAAACC
1 CTAAACC
2059048 CT-AACC
1 CTAAACC
**
2059054 C-GGA-C
1 CTAAACC
*
2059059 CTAAAAC
1 CTAAACC
2059066 CT-AACC
1 CTAAACC
2059072 CTAAACC
1 CTAAACC
2059079 CTAAACC
1 CTAAACC
*
2059086 CGAAACC
1 CTAAACC
*
2059093 CTAAACA
1 CTAAACC
2059100 CT-AA-C
1 CTAAACC
*
2059105 CTAAA-A
1 CTAAACC
**
2059111 AAAAACC
1 CTAAACC
2059118 CTAAACC
1 CTAAACC
*
2059125 CT-AACA
1 CTAAACC
2059131 CTAAACC
1 CTAAACC
2059138 C-AAACC
1 CTAAACC
*
2059144 C-GAACC
1 CTAAACC
2059150 CTAAACC
1 CTAAACC
2059157 CTAAA-C
1 CTAAACC
2059163 CTAAACC
1 CTAAACC
2059170 CTAAA-C
1 CTAAACC
2059176 C-AAACC
1 CTAAACC
2059182 CTAAACC
1 CTAAACC
*
2059189 CTAAACA
1 CTAAACC
2059196 CTAAACC
1 CTAAACC
2059203 CTAAAGCC
1 CTAAA-CC
2059211 CTAAA--
1 CTAAACC
*
2059216 -AAAACC
1 CTAAACC
2059222 CTAAACC
1 CTAAACC
2059229 CTAAAACC
1 CT-AAACC
2059237 CTAAACC
1 CTAAACC
2059244 CTAAACC
1 CTAAACC
2059251 CTAAACC
1 CTAAACC
2059258 CT-AACAC
1 CTAAAC-C
2059265 C-AAACC
1 CTAAACC
2059271 CTAAACTC
1 CTAAAC-C
2059279 CTAAACC
1 CTAAACC
2059286 CT-AACC
1 CTAAACC
*
2059292 CGAAA-C
1 CTAAACC
2059298 CTAAACC
1 CTAAACC
2059305 CTAAACC
1 CTAAACC
2059312 CTAAA-C
1 CTAAACC
2059318 C--AACC
1 CTAAACC
2059323 CTAAACC
1 CTAAACC
2059330 CTAAACC
1 CTAAACC
2059337 CTAAACC
1 CTAAACC
2059344 CTAAACC
1 CTAAACC
*
2059351 C-GAACC
1 CTAAACC
2059357 CTAAACC
1 CTAAACC
2059364 CTAAA-C
1 CTAAACC
2059370 CTAAA-C
1 CTAAACC
2059376 CTAAACC
1 CTAAACC
2059383 CTAAACC
1 CTAAACC
2059390 CTAAA-C
1 CTAAACC
2059396 CTAAGACC
1 CTAA-ACC
* *
2059404 CGAACCC
1 CTAAACC
*
2059411 CTAAACA
1 CTAAACC
2059418 CTAAAAACC
1 CT--AAACC
*
2059427 ATAAA-C
1 CTAAACC
*
2059433 CGAAA-C
1 CTAAACC
2059439 CTAAACC
1 CTAAACC
2059446 CTAAA-C
1 CTAAACC
2059452 CTAAA-C
1 CTAAACC
2059458 CTAAACCC
1 CTAAA-CC
2059466 CTAAACC
1 CTAAACC
* *
2059473 AT-AACA
1 CTAAACC
2059479 CTAAACC
1 CTAAACC
2059486 CTAAAAACC
1 CT--AAACC
2059495 CTAAAAACAC
1 CT--AAAC-C
**
2059505 AGAAAACC
1 -CTAAACC
2059513 CTAAACC
1 CTAAACC
2059520 CTAAAAAACC
1 CT---AAACC
2059530 CTAAA-C
1 CTAAACC
*
2059536 CGAAACC
1 CTAAACC
2059543 CTAAACC
1 CTAAACC
*
2059550 CAAAAAAACC
1 C---TAAACC
2059560 CT-AA-C
1 CTAAACC
2059565 CT-AACC
1 CTAAACC
2059571 CTAAAACCC
1 CT-AAA-CC
*
2059580 CGAAA-C
1 CTAAACC
*
2059586 C-GAACC
1 CTAAACC
2059592 CT-AACC
1 CTAAACC
2059598 CT-AACC
1 CTAAACC
2059604 CT-AACC
1 CTAAACC
2059610 C-AAA-C
1 CTAAACC
2059615 CTAAACC
1 CTAAACC
2059622 CTAAACC
1 CTAAACC
2059629 CTAAACC
1 CTAAACC
2059636 CTAAAACC
1 CT-AAACC
2059644 CTAAACC
1 CTAAACC
2059651 CTAAACC
1 CTAAACC
2059658 CTAAA-C
1 CTAAACC
2059664 CTAAACC
1 CTAAACC
2059671 CTAAAACC
1 CT-AAACC
2059679 CTAAACC
1 CTAAACC
2059686 CTAAACC
1 CTAAACC
*
2059693 CTACACC
1 CTAAACC
2059700 CT-AA-C
1 CTAAACC
*
2059705 CTAAAAC
1 CTAAACC
2059712 CT-AACC
1 CTAAACC
2059718 CTAAACC
1 CTAAACC
2059725 CT-AACC
1 CTAAACC
2059731 CTAAACC
1 CTAAACC
2059738 CTAAACC
1 CTAAACC
*
2059745 CCAAA-C
1 CTAAACC
2059751 CTAAA-C
1 CTAAACC
2059757 CTAAACC
1 CTAAACC
2059764 CT-AACC
1 CTAAACC
2059770 CTAAACC
1 CTAAACC
2059777 CTAAACC
1 CTAAACC
2059784 CT-AACC
1 CTAAACC
2059790 CTAAACC
1 CTAAACC
2059797 CT--ACC
1 CTAAACC
2059802 CTAAACC
1 CTAAACC
2059809 CTAAACC
1 CTAAACC
2059816 CTAAACC
1 CTAAACC
2059823 CT-AACC
1 CTAAACC
2059829 CTAAACC
1 CTAAACC
2059836 CT--ACC
1 CTAAACC
2059841 CTAAACC
1 CTAAACC
*
2059848 CGAAAACC
1 C-TAAACC
2059856 CTAAACC
1 CTAAACC
*
2059863 CGAAACC
1 CTAAACC
2059870 CTAAACC
1 CTAAACC
2059877 CTAAACC
1 CTAAACC
2059884 CT-AACC
1 CTAAACC
2059890 CTAAACCC
1 CTAAA-CC
*
2059898 CAAAACC
1 CTAAACC
2059905 CTAAACC
1 CTAAACC
2059912 CTAAACC
1 CTAAACC
*
2059919 C-CAACC
1 CTAAACC
*
2059925 C-CAACC
1 CTAAACC
2059931 C-AAACC
1 CTAAACC
2059937 C-AAACCC
1 CTAAA-CC
*
2059944 CAAAACC
1 CTAAACC
*
2059951 C-CAACC
1 CTAAACC
2059957 CTAAA-C
1 CTAAACC
2059963 C-AAACC
1 CTAAACC
2059969 CTAAAACC
1 CT-AAACC
2059977 CTAAACC
1 CTAAACC
2059984 C--AACC
1 CTAAACC
2059989 CTAAACC
1 CTAAACC
2059996 CT-AACC
1 CTAAACC
2060002 CT-AACC
1 CTAAACC
2060008 CTAAA--
1 CTAAACC
*
2060013 -AAAACC
1 CTAAACC
*
2060019 CGAAAACC
1 C-TAAACC
2060027 CTAAACC
1 CTAAACC
2060034 CTAAAAACC
1 CT--AAACC
2060043 CTAAACC
1 CTAAACC
2060050 CT-AACC
1 CTAAACC
2060056 CTAAACC
1 CTAAACC
2060063 CTAAACC
1 CTAAACC
2060070 CTAAACGC
1 CTAAAC-C
2060078 CTAAACC
1 CTAAACC
2060085 CTAAACC
1 CTAAACC
2060092 CTAAACC
1 CTAAACC
2060099 CTAAACC
1 CTAAACC
2060106 CTAAACC
1 CTAAACC
2060113 CT-AACC
1 CTAAACC
2060119 CTAAACC
1 CTAAACC
2060126 CTAAACC
1 CTAAACC
2060133 CTAAACC
1 CTAAACC
2060140 CTAAACC
1 CTAAACC
2060147 CTAAACC
1 CTAAACC
2060154 CT-AACC
1 CTAAACC
* **
2060160 CGACGCC
1 CTAAACC
*
2060167 C-GAA-C
1 CTAAACC
2060172 CTAAACC
1 CTAAACC
2060179 CTAAACC
1 CTAAACC
2060186 CT-AACC
1 CTAAACC
2060192 CTAAA-C
1 CTAAACC
2060198 CT-AACC
1 CTAAACC
* *
2060204 CAAAACA
1 CTAAACC
2060211 CTAAA-C
1 CTAAACC
2060217 CTAAACC
1 CTAAACC
2060224 CTAAACC
1 CTAAACC
2060231 CTAAACC
1 CTAAACC
*
2060238 CGAAAAAACC
1 C---TAAACC
*
2060248 CTAAAAC
1 CTAAACC
*
2060255 CTAAAAC
1 CTAAACC
2060262 CTAAACC
1 CTAAACC
2060269 CTAAACC
1 CTAAACC
2060276 CTAAACCC
1 CTAAA-CC
2060284 CTAAACC
1 CTAAACC
2060291 CT-AACC
1 CTAAACC
2060297 CTAAACC
1 CTAAACC
2060304 CTAAACC
1 CTAAACC
2060311 CTAAACC
1 CTAAACC
*
2060318 CGAAACC
1 CTAAACC
2060325 CTAAACC
1 CTAAACC
2060332 CT-AACC
1 CTAAACC
2060338 CTAAACC
1 CTAAACC
*
2060345 CGAAA-C
1 CTAAACC
2060351 CTAAA-C
1 CTAAACC
2060357 CTAAACC
1 CTAAACC
2060364 CTAAACC
1 CTAAACC
2060371 CTAAACC
1 CTAAACC
2060378 CTAAACC
1 CTAAACC
2060385 CT-AACC
1 CTAAACC
2060391 CTAAAACC
1 CT-AAACC
2060399 CTAAACC
1 CTAAACC
2060406 CTAAA-C
1 CTAAACC
2060412 CTAAACC
1 CTAAACC
*
2060419 C-AAAAC
1 CTAAACC
*
2060425 CTAAAAC
1 CTAAACC
2060432 CTAAA-C
1 CTAAACC
2060438 CTAAA-C
1 CTAAACC
2060444 CTAAGA-C
1 CTAA-ACC
2060451 CTAAACC
1 CTAAACC
2060458 CTAAACC
1 CTAAACC
*
2060465 CGAAACC
1 CTAAACC
2060472 CTAAACC
1 CTAAACC
2060479 CTAAA-C
1 CTAAACC
2060485 CT-AACC
1 CTAAACC
2060491 CTAAACCC
1 CTAAA-CC
2060499 CTAAACC
1 CTAAACC
2060506 CT-AACC
1 CTAAACC
2060512 CTAAACC
1 CTAAACC
*
2060519 CTAAAAC
1 CTAAACC
*
2060526 GTAAACC
1 CTAAACC
*
2060533 CTAAGCC
1 CTAAACC
2060540 CTAAACC
1 CTAAACC
2060547 CTAAACC
1 CTAAACC
2060554 CTAAACC
1 CTAAACC
2060561 CTAAACACC
1 CT-AA-ACC
2060570 CGTAAACC
1 C-TAAACC
*
2060578 CTAACCC
1 CTAAACC
2060585 CTAAACC
1 CTAAACC
*
2060592 CGAAAAAACC
1 C---TAAACC
2060602 CT-AACC
1 CTAAACC
2060608 CTAAA-C
1 CTAAACC
2060614 CT-AA-C
1 CTAAACC
2060619 CTAAACC
1 CTAAACC
2060626 CTAAACC
1 CTAAACC
2060633 CTAAACC
1 CTAAACC
2060640 CTAAA-C
1 CTAAACC
2060646 CTAAACC
1 CTAAACC
2060653 CT-AA-C
1 CTAAACC
*
2060658 C-GAACC
1 CTAAACC
2060664 CTAAACC
1 CTAAACC
2060671 CTAAACC
1 CTAAACC
2060678 CT-AACC
1 CTAAACC
2060684 CT-AACC
1 CTAAACC
2060690 CTAAACC
1 CTAAACC
*
2060697 ACCATAACC
1 -CTA-AACC
2060706 CTAAACC
1 CTAAACC
2060713 CTAAACC
1 CTAAACC
2060720 CTAAACC
1 CTAAACC
** *
2060727 GAAAACA
1 CTAAACC
2060734 CT-AACC
1 CTAAACC
*
2060740 CTAAACA
1 CTAAACC
2060747 CTAAACC
1 CTAAACC
2060754 CTAAACC
1 CTAAACC
2060761 CTAAACC
1 CTAAACC
2060768 CTAAACC
1 CTAAACC
2060775 CTAAACC
1 CTAAACC
2060782 CTAAACC
1 CTAAACC
2060789 CTAAACC
1 CTAAACC
2060796 CTAAACC
1 CTAAACC
2060803 CTAAACC
1 CTAAACC
2060810 CTAAAAACC
1 CT--AAACC
2060819 CTAAACC
1 CTAAACC
2060826 CTAAAACC
1 CT-AAACC
2060834 CTAAACC
1 CTAAACC
2060841 CTAAACC
1 CTAAACC
2060848 CTAAACC
1 CTAAACC
*
2060855 CGAACACC
1 CTAA-ACC
*
2060863 CTAAACA
1 CTAAACC
* *
2060870 ATAAAAC
1 CTAAACC
2060877 CTAAA--
1 CTAAACC
2060882 CTAAACC
1 CTAAACC
2060889 CTAAACC
1 CTAAACC
*
2060896 CTAAACA
1 CTAAACC
2060903 CTAAACC
1 CTAAACC
*
2060910 CGAAACC
1 CTAAACC
2060917 CTAAACC
1 CTAAACC
2060924 CTAAACC
1 CTAAACC
*
2060931 CTAAAAC
1 CTAAACC
*
2060938 C-AACCC
1 CTAAACC
2060944 CTAAACC
1 CTAAACC
2060951 CT-AA-C
1 CTAAACC
2060956 CTAAAAAACC
1 CT---AAACC
2060966 CTAAACC
1 CTAAACC
2060973 CTAAACC
1 CTAAACC
2060980 CTAAACC
1 CTAAACC
2060987 CTAAACC
1 CTAAACC
2060994 CTAAAACCC
1 CT-AAA-CC
2061003 CTAAACC
1 CTAAACC
2061010 CTAAACC
1 CTAAACC
*
2061017 CGAAACC
1 CTAAACC
*
2061024 AT-AACC
1 CTAAACC
2061030 CTAAACC
1 CTAAACC
2061037 CTAAACC
1 CTAAACC
2061044 CTAAAACC
1 CT-AAACC
2061052 CTAAACC
1 CTAAACC
2061059 CTAAACC
1 CTAAACC
2061066 CTAAACC
1 CTAAACC
2061073 CTAAACC
1 CTAAACC
2061080 CTAGAAACC
1 CT--AAACC
2061089 CTAAAACC
1 CT-AAACC
2061097 CT-AACC
1 CTAAACC
2061103 CTAAACC
1 CTAAACC
2061110 CTAAA-C
1 CTAAACC
2061116 CT-AACC
1 CTAAACC
2061122 CTAAACC
1 CTAAACC
2061129 CTAAAACC
1 CT-AAACC
2061137 CTAAA-C
1 CTAAACC
2061143 CT-AACC
1 CTAAACC
*
2061149 CTAAA-A
1 CTAAACC
*
2061155 CGAAA-C
1 CTAAACC
2061161 C-AGAACC
1 CTA-AACC
2061168 CTAAACC
1 CTAAACC
2061175 CT-AACC
1 CTAAACC
2061181 CTAAACC
1 CTAAACC
2061188 C--AA-C
1 CTAAACC
2061192 CTAAACC
1 CTAAACC
2061199 CTAAACC
1 CTAAACC
2061206 CTAAAAACC
1 CT--AAACC
2061215 CTAAACC
1 CTAAACC
2061222 CT-AA-C
1 CTAAACC
*
2061227 CTAAAAC
1 CTAAACC
2061234 CTAAACC
1 CTAAACC
2061241 CTAAACC
1 CTAAACC
2061248 CTAAACC
1 CTAAACC
2061255 CTGAAACC
1 CT-AAACC
*
2061263 CTAAACA
1 CTAAACC
2061270 CTAAACC
1 CTAAACC
2061277 CTAAACC
1 CTAAACC
*
2061284 CTCAACGC
1 CTAAAC-C
2061292 CTAAACC
1 CTAAACC
2061299 CT--ACC
1 CTAAACC
2061304 CTAAACC
1 CTAAACC
2061311 CTAAACCCC
1 CTAAA--CC
2061320 CTAAA-C
1 CTAAACC
2061326 CTAAACC
1 CTAAACC
*
2061333 CTACA-C
1 CTAAACC
*
2061339 CTAAGCC
1 CTAAACC
2061346 CTAAACC
1 CTAAACC
**
2061353 GAAAAACC
1 -CTAAACC
* *
2061361 CGAAACA
1 CTAAACC
2061368 CTAAACC
1 CTAAACC
2061375 CTAAACC
1 CTAAACC
2061382 CTAAAAACC
1 CT--AAACC
2061391 CTAAACC
1 CTAAACC
2061398 CTAAACC
1 CTAAACC
2061405 C-AAA-C
1 CTAAACC
2061410 CTAAACC
1 CTAAACC
*
2061417 CGAAACC
1 CTAAACC
2061424 CT-AACC
1 CTAAACC
2061430 CTAAACC
1 CTAAACC
2061437 GCT-AACC
1 -CTAAACC
2061444 CATAAA-C
1 C-TAAACC
** *
2061451 AGAAAAC
1 CTAAACC
2061458 CTAAAAAACC
1 CT---AAACC
*
2061468 CTAAACA
1 CTAAACC
2061475 CTAAACC
1 CTAAACC
2061482 CTAAACC
1 CTAAACC
2061489 CTAAACC
1 CTAAACC
2061496 CT-AACC
1 CTAAACC
2061502 CTAAACC
1 CTAAACC
2061509 CTAAACC
1 CTAAACC
2061516 CT-AACC
1 CTAAACC
2061522 CTAAA-C
1 CTAAACC
2061528 CTAAACC
1 CTAAACC
2061535 C-AAACC
1 CTAAACC
2061541 CTAAACC
1 CTAAACC
2061548 CTAAAACC
1 CT-AAACC
*
2061556 CTAAA-A
1 CTAAACC
**
2061562 AAAAACC
1 CTAAACC
2061569 CTAAACC
1 CTAAACC
2061576 CTAAACC
1 CTAAACC
2061583 CTAAACC
1 CTAAACC
2061590 CTAAAAAACC
1 CT---AAACC
2061600 CTAAA-C
1 CTAAACC
2061606 CTAAACC
1 CTAAACC
2061613 CTAAA-C
1 CTAAACC
2061619 CTAAACAC
1 CTAAAC-C
2061627 CT-AACC
1 CTAAACC
*
2061633 CGAAACC
1 CTAAACC
2061640 CTAAACC
1 CTAAACC
2061647 CT-AA-C
1 CTAAACC
2061652 CTAAACAC
1 CTAAAC-C
2061660 CTAAACC
1 CTAAACC
*
2061667 ATAAACC
1 CTAAACC
2061674 CTAAACC
1 CTAAACC
2061681 CTAAACC
1 CTAAACC
2061688 CTAAA-C
1 CTAAACC
2061694 CTAAACC
1 CTAAACC
2061701 CT-AACC
1 CTAAACC
2061707 CTAAAACC
1 CT-AAACC
2061715 CTAAAAACC
1 CT--AAACC
*
2061724 CGAAACC
1 CTAAACC
2061731 CTAAACC
1 CTAAACC
2061738 CTAAACC
1 CTAAACC
2061745 CT-AACC
1 CTAAACC
*
2061751 CGAAA--
1 CTAAACC
2061756 C-AAACC
1 CTAAACC
2061762 CTAAACC
1 CTAAACC
2061769 CT-AACC
1 CTAAACC
*
2061775 CGAAACC
1 CTAAACC
2061782 CTAAACC
1 CTAAACC
2061789 CTAAACAC
1 CTAAAC-C
2061797 CTAAACC
1 CTAAACC
2061804 CTAAACGC
1 CTAAAC-C
*
2061812 CTAAAAC
1 CTAAACC
2061819 CTAAA-C
1 CTAAACC
*
2061825 CGAAACC
1 CTAAACC
2061832 CTAAACC
1 CTAAACC
2061839 CTAAACC
1 CTAAACC
2061846 CTAAACC
1 CTAAACC
2061853 CTAAACC
1 CTAAACC
2061860 CTAAACC
1 CTAAACC
2061867 CTAAACC
1 CTAAACC
2061874 CTAAACC
1 CTAAACC
2061881 CTAAACC
1 CTAAACC
2061888 CTAAACC
1 CTAAACC
*
2061895 CTAAAAC
1 CTAAACC
2061902 CT-AACC
1 CTAAACC
2061908 CTAAACC
1 CTAAACC
2061915 CTAAACC
1 CTAAACC
* *
2061922 CAAAAAAC
1 C-TAAACC
*
2061930 CGAAA--
1 CTAAACC
*
2061935 -AAAACC
1 CTAAACC
***
2061941 AGCAACC
1 CTAAACC
2061948 CT-AACC
1 CTAAACC
2061954 CTAAACC
1 CTAAACC
2061961 CTAAACC
1 CTAAACC
2061968 CT-AACC
1 CTAAACC
2061974 CTAAA-C
1 CTAAACC
2061980 CTAAACC
1 CTAAACC
2061987 CTAAA-C
1 CTAAACC
2061993 CTAAACC
1 CTAAACC
2062000 CTAAA-C
1 CTAAACC
2062006 CTAAACC
1 CTAAACC
2062013 CTAAAACC
1 CT-AAACC
2062021 CTAAA--
1 CTAAACC
*
2062026 -AAAACC
1 CTAAACC
2062032 CTAAACC
1 CTAAACC
2062039 CTAAACC
1 CTAAACC
2062046 CTAAACC
1 CTAAACC
*
2062053 C-GAA-C
1 CTAAACC
*
2062058 CGAAA-C
1 CTAAACC
2062064 CTAAACC
1 CTAAACC
2062071 CTAAACC
1 CTAAACC
2062078 CTAAA--
1 CTAAACC
*
2062083 -AAAACC
1 CTAAACC
2062089 CTAAGA-C
1 CTAA-ACC
2062096 CT-AACC
1 CTAAACC
2062102 CTAAGAACC
1 CT-A-AACC
*
2062111 CTAAAACA
1 CT-AAACC
2062119 CTAAACC
1 CTAAACC
2062126 CT-AACC
1 CTAAACC
*
2062132 CGAAA-C
1 CTAAACC
2062138 CTAAACC
1 CTAAACC
*
2062145 CTAAACA
1 CTAAACC
2062152 CT-AACC
1 CTAAACC
*
2062158 ATAAA-C
1 CTAAACC
2062164 CT-AACC
1 CTAAACC
2062170 CTAAACC
1 CTAAACC
2062177 CTAAACC
1 CTAAACC
2062184 CT-AACC
1 CTAAACC
2062190 CTAAACC
1 CTAAACC
2062197 CTAAACC
1 CTAAACC
*
2062204 CGAAACC
1 CTAAACC
*
2062211 CTAAAAAAC
1 CT--AAACC
2062220 CT-AA-C
1 CTAAACC
*
2062225 CGAAACGC
1 CTAAAC-C
2062233 CTAAACC
1 CTAAACC
2062240 CTAAACC
1 CTAAACC
2062247 CTAAACC
1 CTAAACC
2062254 CTAAA-C
1 CTAAACC
*
2062260 C-AACCC
1 CTAAACC
2062266 CTAAACC
1 CTAAACC
2062273 CTAAACC
1 CTAAACC
2062280 CTAAACC
1 CTAAACC
2062287 CTAAA-C
1 CTAAACC
2062293 CTAAAACCC
1 CT-AAA-CC
2062302 CTGAAACC
1 CT-AAACC
2062310 CTAAACC
1 CTAAACC
*
2062317 ATAAAACC
1 CT-AAACC
*
2062325 CTGAA-C
1 CTAAACC
2062331 CTAAACC
1 CTAAACC
*
2062338 CTAAAAC
1 CTAAACC
2062345 CTAAAACC
1 CT-AAACC
2062353 CTAAACC
1 CTAAACC
*
2062360 CGAAACC
1 CTAAACC
2062367 CT-AACC
1 CTAAACC
2062373 CTAAACC
1 CTAAACC
2062380 CTAAACC
1 CTAAACC
2062387 CTAAACC
1 CTAAACC
*
2062394 ATAAACC
1 CTAAACC
** *
2062401 AGAAAAC
1 CTAAACC
2062408 CT-AACC
1 CTAAACC
*
2062414 CTAAAAAC
1 CT-AAACC
2062422 CTAAACC
1 CTAAACC
2062429 CT-AACC
1 CTAAACC
2062435 CTAAACCC
1 CTAAA-CC
2062443 CTAAA-C
1 CTAAACC
2062449 CTAAACC
1 CTAAACC
2062456 CTAAA-C
1 CTAAACC
2062462 CTAAACC
1 CTAAACC
2062469 CT-AACC
1 CTAAACC
2062475 CTAAACC
1 CTAAACC
2062482 CTAAAAACC
1 CT--AAACC
2062491 CTAAACC
1 CTAAACC
*
2062498 CAGAAACC
1 C-TAAACC
2062506 CTAAACAC
1 CTAAAC-C
2062514 CTAAACC
1 CTAAACC
2062521 C--AACC
1 CTAAACC
2062526 CTAAACC
1 CTAAACC
2062533 CTAAAACC
1 CT-AAACC
2062541 CTAAACC
1 CTAAACC
2062548 CT--ACC
1 CTAAACC
2062553 CTAAACC
1 CTAAACC
2062560 CTAAACC
1 CTAAACC
2062567 CT-AA-C
1 CTAAACC
2062572 CTAAAACC
1 CT-AAACC
2062580 CTAAA--
1 CTAAACC
*
2062585 CGAAA-C
1 CTAAACC
*
2062591 CAAAACC
1 CTAAACC
2062598 C--AACC
1 CTAAACC
*
2062603 CCAAACC
1 CTAAACC
*
2062610 C-CAACC
1 CTAAACC
2062616 C-AAACC
1 CTAAACC
*
2062622 GC-CAACC
1 -CTAAACC
2062629 C-AAACC
1 CTAAACC
2062635 C--AACC
1 CTAAACC
*
2062640 CCAACCACAC
1 CTAA--AC-C
*
2062650 CCAAACC
1 CTAAACC
*
2062657 CCAAACC
1 CTAAACC
*
2062664 CCAAACC
1 CTAAACC
2062671 C--AACC
1 CTAAACC
*
2062676 CCAAACAC
1 CTAAAC-C
2062684 C---ACC
1 CTAAACC
* *
2062688 CCAACCC
1 CTAAACC
*
2062695 CCAAA-C
1 CTAAACC
2062701 C-AAACC
1 CTAAACC
2062707 C-AAA-C
1 CTAAACC
2062712 C-AAACC
1 CTAAACC
*
2062718 CCAAACC
1 CTAAACC
*
2062725 CCAAACC
1 CTAAACC
* *
2062732 CGCAACCC
1 C-TAAACC
*
2062740 CAAAACC
1 CTAAACC
*
2062747 CCAAACC
1 CTAAACC
*
2062754 CCAAACCC
1 CTAAA-CC
*
2062762 CAAAACC
1 CTAAACC
*
2062769 CCAAACAC
1 CTAAAC-C
2062777 C-AAACCC
1 CTAAA-CC
*
2062784 CAAAAACCC
1 C-TAAA-CC
*
2062793 CCAAACC
1 CTAAACC
*
2062800 CCAAACC
1 CTAAACC
*
2062807 CCAAACC
1 CTAAACC
*
2062814 CTAAAAC
1 CTAAACC
2062821 CTAAAACC
1 CT-AAACC
2062829 CTAAACC
1 CTAAACC
*
2062836 C-GAACC
1 CTAAACC
2062842 CTAAACC
1 CTAAACC
2062849 C--AACC
1 CTAAACC
2062854 CTAAA-C
1 CTAAACC
2062860 CTAAACC
1 CTAAACC
2062867 CTAAACC
1 CTAAACC
*
2062874 CTAAACA
1 CTAAACC
2062881 CTAAACC
1 CTAAACC
2062888 CT-AACC
1 CTAAACC
2062894 CTAAACC
1 CTAAACC
2062901 CTAAACC
1 CTAAACC
2062908 CTAAAACC
1 CT-AAACC
2062916 CTAAACC
1 CTAAACC
2062923 CTAAACC
1 CTAAACC
2062930 CTAAAACC
1 CT-AAACC
2062938 CTAAACC
1 CTAAACC
*
2062945 CTAAAAC
1 CTAAACC
2062952 CT-AACC
1 CTAAACC
2062958 CTAAAACC
1 CT-AAACC
2062966 CT-AACC
1 CTAAACC
2062972 CTAAAACC
1 CT-AAACC
2062980 CT-AACC
1 CTAAACC
2062986 CATAAAACC
1 C-T-AAACC
2062995 CTAAA-C
1 CTAAACC
2063001 CTAAACC
1 CTAAACC
2063008 CTAAA-C
1 CTAAACC
2063014 CTAAAACC
1 CT-AAACC
2063022 CTAAACC
1 CTAAACC
2063029 CTAAACC
1 CTAAACC
2063036 CTAAACC
1 CTAAACC
2063043 CTAAA--
1 CTAAACC
**
2063048 AAAAACC
1 CTAAACC
2063055 CTAAACC
1 CTAAACC
2063062 CTAAA-C
1 CTAAACC
2063068 C--AACC
1 CTAAACC
2063073 CTAAACC
1 CTAAACC
2063080 CTAAACC
1 CTAAACC
2063087 CTAAACC
1 CTAAACC
2063094 CTAAACC
1 CTAAACC
*
2063101 CTAAAAC
1 CTAAACC
2063108 CTAAACC
1 CTAAACC
2063115 CTAAACC
1 CTAAACC
2063122 CTAAA-C
1 CTAAACC
*
2063128 CTAAACA
1 CTAAACC
2063135 CT-AACC
1 CTAAACC
2063141 CT-AACC
1 CTAAACC
*
2063147 CTAAAAC
1 CTAAACC
*
2063154 CTGAACC
1 CTAAACC
2063161 CTAAACCC
1 CTAAA-CC
2063169 CTAAA-C
1 CTAAACC
2063175 CTAAAACC
1 CT-AAACC
2063183 CTAAACC
1 CTAAACC
2063190 CT-AACC
1 CTAAACC
2063196 CTAAA-C
1 CTAAACC
2063202 CTAAACGC
1 CTAAAC-C
2063210 CATAAA-C
1 C-TAAACC
2063217 CTAAACC
1 CTAAACC
*
2063224 CTAACCC
1 CTAAACC
2063231 CTAAA-C
1 CTAAACC
2063237 CTAAACC
1 CTAAACC
*
2063244 TATAAACC
1 -CTAAACC
2063252 CTAAAACC
1 CT-AAACC
2063260 CTAAACC
1 CTAAACC
*
2063267 CT-AACA
1 CTAAACC
2063273 CTAAAACC
1 CT-AAACC
2063281 CTAAA-C
1 CTAAACC
*
2063287 C-AAA-A
1 CTAAACC
2063292 CT-AACC
1 CTAAACC
2063298 CT-AACC
1 CTAAACC
2063304 CT-AACC
1 CTAAACC
2063310 CTAAACC
1 CTAAACC
2063317 CTAAACC
1 CTAAACC
2063324 CTAAACC
1 CTAAACC
*
2063331 CGAAACC
1 CTAAACC
2063338 CTAAACC
1 CTAAACC
2063345 CT--A-C
1 CTAAACC
*
2063349 CGAAACC
1 CTAAACC
2063356 CTAAACC
1 CTAAACC
*
2063363 C-GAACC
1 CTAAACC
2063369 CTAAACC
1 CTAAACC
2063376 CT-AACC
1 CTAAACC
2063382 CTAAACC
1 CTAAACC
2063389 CTAAA-C
1 CTAAACC
2063395 CTAACGACAC
1 CTAA--AC-C
2063405 CTAAAACC
1 CT-AAACC
*
2063413 CTAAACAA
1 CTAAAC-C
*
2063421 ATAAAAAGACC
1 CT---AA-ACC
2063432 CTAAACC
1 CTAAACC
2063439 CT-AACC
1 CTAAACC
2063445 CT-AACC
1 CTAAACC
2063451 CTAAACC
1 CTAAACC
2063458 CT-AACC
1 CTAAACC
2063464 CTAAACC
1 CTAAACC
2063471 CTAAACC
1 CTAAACC
2063478 CTAAACC
1 CTAAACC
2063485 CTAAA-C
1 CTAAACC
*
2063491 ATAAACC
1 CTAAACC
2063498 CT-AACC
1 CTAAACC
2063504 C-AAACC
1 CTAAACC
2063510 CTAAACC
1 CTAAACC
2063517 CT-AACC
1 CTAAACC
2063523 CTAAACC
1 CTAAACC
2063530 CTAAACC
1 CTAAACC
2063537 CTAAACC
1 CTAAACC
2063544 CTAAACGC
1 CTAAAC-C
2063552 C-AAACCC
1 CTAAA-CC
2063559 CTAAACC
1 CTAAACC
2063566 CTAAACAC
1 CTAAAC-C
*
2063574 TTAAATCACC
1 CT-AA--ACC
2063584 CTAAACC
1 CTAAACC
2063591 CTAAACC
1 CTAAACC
* *
2063598 CGAAAAC
1 CTAAACC
2063605 CTAAACC
1 CTAAACC
2063612 CTAAACC
1 CTAAACC
2063619 CT-AA-C
1 CTAAACC
*
2063624 CTAAACA
1 CTAAACC
2063631 C--AACC
1 CTAAACC
2063636 CT-AACC
1 CTAAACC
2063642 CTAAAAAACC
1 CT---AAACC
2063652 CTAAACC
1 CTAAACC
2063659 CT-AACC
1 CTAAACC
*
2063665 CGAAACC
1 CTAAACC
*
2063672 ATAAACC
1 CTAAACC
2063679 CTAAAACC
1 CT-AAACC
2063687 CT-AACC
1 CTAAACC
2063693 CTAAACC
1 CTAAACC
*
2063700 ATAAACC
1 CTAAACC
2063707 CTAAACC
1 CTAAACC
2063714 CTAAACC
1 CTAAACC
2063721 CTAAA-C
1 CTAAACC
2063727 C-AAA-C
1 CTAAACC
2063732 CTAAACC
1 CTAAACC
2063739 GCTAAACC
1 -CTAAACC
2063747 GCTAAACC
1 -CTAAACC
2063755 CTAAACCC
1 CTAAA-CC
2063763 CTAAACC
1 CTAAACC
* *
2063770 CGAAAAC
1 CTAAACC
*
2063777 AT-AACC
1 CTAAACC
*
2063783 C-GAA-C
1 CTAAACC
*
2063788 AT-AACC
1 CTAAACC
2063794 CTAAACC
1 CTAAACC
*
2063801 CT-AACA
1 CTAAACC
2063807 CTAAAAACC
1 CT--AAACC
*
2063816 CT-AACG
1 CTAAACC
2063822 CTAAACC
1 CTAAACC
*
2063829 CGAAACC
1 CTAAACC
2063836 GGACTAAAACC
1 ---CT-AAACC
2063847 CGTAAACC
1 C-TAAACC
*
2063855 CGAAACC
1 CTAAACC
2063862 CGTAAACC
1 C-TAAACC
2063870 CGT-AACTC
1 C-TAAAC-C
*
2063878 CGAACAAACC
1 C---TAAACC
2063888 CGATAAA--
1 C--TAAACC
*
2063895 CGAAACC
1 CTAAACC
*
2063902 CGAAAACC
1 C-TAAACC
*
2063910 CGAAACC
1 CTAAACC
2063917 CGTAAAACC
1 C-T-AAACC
2063926 CTAACAAACC
1 CT---AAACC
*
2063936 CGAAACC
1 CTAAACC
*
2063943 ATAAACC
1 CTAAACC
2063950 CT-AACC
1 CTAAACC
2063956 CTAAAAACC
1 CT--AAACC
2063965 CTAAACC
1 CTAAACC
*
2063972 CGAAACC
1 CTAAACC
2063979 CT-AACC
1 CTAAACC
2063985 CTAAAAAACC
1 CT---AAACC
2063995 CTAAACC
1 CTAAACC
2064002 CTAAACC
1 CTAAACC
2064009 C--AACC
1 CTAAACC
*
2064014 CCAAACC
1 CTAAACC
*
2064021 CCAAACC
1 CTAAACC
*
2064028 CCAAACC
1 CTAAACC
*
2064035 C-ACACC
1 CTAAACC
*
2064041 C-CAACC
1 CTAAACC
2064047 C--AACC
1 CTAAACC
*
2064052 GCCAAACC
1 -CTAAACC
*
2064060 CCAAACC
1 CTAAACC
*
2064067 CCAAACC
1 CTAAACC
*
2064074 CCAAACC
1 CTAAACC
*
2064081 CCAAACC
1 CTAAACC
*
2064088 C-CAACC
1 CTAAACC
*
2064094 CCAAACC
1 CTAAACC
2064101 C
1 C
2064102 AACCCCAACC
Statistics
Matches: 6086, Mismatches: 500, Indels: 1218
0.78 0.06 0.16
Matches are distributed among these distances:
4 31 0.01
5 242 0.04
6 1346 0.22
7 3448 0.57
8 640 0.11
9 244 0.04
10 116 0.02
11 17 0.00
12 2 0.00
ACGTcount: A:0.45, C:0.41, G:0.02, T:0.12
Consensus pattern (7 bp):
CTAAACC
Found at i:2064203 original size:7 final size:6
Alignment explanation
Indices: 2064007--2064245 Score: 171
Period size: 7 Copynumber: 36.8 Consensus size: 6
2063997 AAACCCTAAA
*
2064007 CCCAAC CCCAAAC CCCAAAC CCCAAA CCCACAC CCCAA- CCCAAC CGCCAAAC
1 CCCAAC CCC-AAC CCC-AAC CCCAAC CCCA-AC CCCAAC CCCAAC C-CC-AAC
*
2064059 CCCAAAC CCCAAAC CCCAAAC CCCAAAC CCCAAC CCCAAA CCCAAC CCCAA-
1 CCC-AAC CCC-AAC CCC-AAC CCC-AAC CCCAAC CCCAAC CCCAAC CCCAAC
* * *
2064110 CCCAACC CCCACC CCCAAAC CCCCAC CCAAAC CCCAAAC CCCAAAC CACCAAAC
1 CCCAA-C CCCAAC CCC-AAC CCCAAC CCCAAC CCC-AAC CCC-AAC C-CC-AAC
* * * *
2064164 CCCAAA CCCAAC ACCAAC CCAAAAC CCCAAC CCCAGAC CCC-AG CCCAGA-
1 CCCAAC CCCAAC CCCAAC CC-CAAC CCCAAC CCCA-AC CCCAAC CCCA-AC
2064213 CCCAGAC CCCAGAC CCCAGAC CCCAGAC CCCAA
1 CCCA-AC CCCA-AC CCCA-AC CCCA-AC CCCAA
2064246 GCCTCGAGCC
Statistics
Matches: 201, Mismatches: 17, Indels: 30
0.81 0.07 0.12
Matches are distributed among these distances:
5 14 0.07
6 68 0.34
7 108 0.54
8 11 0.05
ACGTcount: A:0.38, C:0.59, G:0.03, T:0.00
Consensus pattern (6 bp):
CCCAAC
Found at i:2064232 original size:14 final size:13
Alignment explanation
Indices: 2063998--2064470 Score: 215
Period size: 14 Copynumber: 35.9 Consensus size: 13
2063988 AAAAACCCTA
*
2063998 AACCCTAAA-CCC
1 AACCCCAAACCCC
2064010 AACCCCAAACCCC
1 AACCCCAAACCCC
2064023 AAACCCCAAA-CCC
1 -AACCCCAAACCCC
2064036 ACACCCC-AA-CCC
1 A-ACCCCAAACCCC
2064048 AACCGCCAAACCCC
1 AACC-CCAAACCCC
2064062 AAACCCCAAACCCC
1 -AACCCCAAACCCC
2064076 AAACCCCAAACCCC
1 -AACCCCAAACCCC
2064090 AACCCCAAA-CCC
1 AACCCCAAACCCC
2064102 AACCCC-AA-CCC
1 AACCCCAAACCCC
* *
2064113 AACCCCCACCCCC
1 AACCCCAAACCCC
* *
2064126 AAACCCC-CACCCA
1 -AACCCCAAACCCC
2064139 AACCCCAAACCCC
1 AACCCCAAACCCC
2064152 AAACCACCAAACCCC
1 -AACC-CCAAACCCC
* *
2064167 AAACCC-AACACC
1 AACCCCAAACCCC
*
2064179 AACCCAAAACCCC
1 AACCCCAAACCCC
*
2064192 AACCCCAGACCCC
1 AACCCCAAACCCC
* *
2064205 -AGCCCAGA-CCC
1 AACCCCAAACCCC
*
2064216 AGACCCCAGACCCC
1 A-ACCCCAAACCCC
*
2064230 AGACCCCAGACCCC
1 A-ACCCCAAACCCC
* * *
2064244 AAGCCTCGAGCCTCGC
1 AA-CCCCAAACC-C-C
* * * *
2064260 -GCCTCGAGCCCC
1 AACCCCAAACCCC
* *
2064272 GACCCCGAACCCC
1 AACCCCAAACCCC
* *
2064285 GAACCCCAAGCCTCG
1 -AACCCCAAACC-CC
* * *
2064300 AACCTCGAACCCG
1 AACCCCAAACCCC
* *
2064313 AACCCTAAACCCAA
1 AACCCCAAACCC-C
* *
2064327 AACCCTAAACCTCA
1 AACCCCAAACC-CC
* * *
2064341 AATCTCAAATCCCA
1 AACCCCAAA-CCCC
* *
2064355 AACCCTAAAACCCT
1 AACCC-CAAACCCC
* *
2064369 AACCCTAAACCCTA
1 AACCCCAAACCC-C
*
2064383 AACCCCAAACCCA
1 AACCCCAAACCCC
*
2064396 AACCCTAAACCCC
1 AACCCCAAACCCC
2064409 AAACCCCAAGA----
1 -AACCCCAA-ACCCC
2064420 AA-CCCAAACCCC
1 AACCCCAAACCCC
*
2064432 AAACCTCAAACCCC
1 -AACCCCAAACCCC
* * *
2064446 AACCTCGAACCCG
1 AACCCCAAACCCC
*
2064459 AACCCTAAACCC
1 AACCCCAAACCC
2064471 AAAACCCTAA
Statistics
Matches: 371, Mismatches: 54, Indels: 71
0.75 0.11 0.14
Matches are distributed among these distances:
8 1 0.00
9 5 0.01
10 2 0.01
11 17 0.05
12 50 0.13
13 119 0.32
14 154 0.42
15 22 0.06
16 1 0.00
ACGTcount: A:0.37, C:0.53, G:0.05, T:0.04
Consensus pattern (13 bp):
AACCCCAAACCCC
Found at i:2064283 original size:7 final size:7
Alignment explanation
Indices: 2064268--2064317 Score: 52
Period size: 7 Copynumber: 7.4 Consensus size: 7
2064258 GCGCCTCGAG
2064268 CCCCG-A
1 CCCCGAA
2064274 CCCCGAA
1 CCCCGAA
2064281 CCCCGAA
1 CCCCGAA
2064288 CCCC-AA
1 CCCCGAA
*
2064294 GCCTCGAA
1 -CCCCGAA
*
2064302 CCTCGAA
1 CCCCGAA
2064309 -CCCGAA
1 CCCCGAA
2064315 CCC
1 CCC
2064318 TAAACCCAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
6 12 0.32
7 24 0.63
8 2 0.05
ACGTcount: A:0.26, C:0.56, G:0.14, T:0.04
Consensus pattern (7 bp):
CCCCGAA
Found at i:2064323 original size:7 final size:7
Alignment explanation
Indices: 2064313--2064483 Score: 101
Period size: 7 Copynumber: 24.6 Consensus size: 7
2064303 CTCGAACCCG
2064313 AACCCTA
1 AACCCTA
*
2064320 AACCCAA
1 AACCCTA
2064327 AACCCTA
1 AACCCTA
2064334 AA-CCTCA
1 AACCCT-A
*
2064341 AA-TCTCA
1 AACCCT-A
2064348 AATCCC-A
1 AA-CCCTA
2064355 AACCCTAA
1 AACCCT-A
2064363 AACCCT-
1 AACCCTA
2064369 AACCCTA
1 AACCCTA
2064376 AACCCTA
1 AACCCTA
*
2064383 AACCCCA
1 AACCCTA
2064390 AACCC-A
1 AACCCTA
2064396 AACCCTA
1 AACCCTA
*
2064403 AACCCCA
1 AACCCTA
*
2064410 AACCCCAAGA
1 AA-CCC--TA
2064420 AACCC-A
1 AACCCTA
*
2064426 AACCCCA
1 AACCCTA
2064433 AA-CCTCA
1 AACCCT-A
*
2064440 AACCC-C
1 AACCCTA
*
2064446 AA-CCTCG
1 AACCCT-A
*
2064453 AACCC-G
1 AACCCTA
2064459 AACCCTA
1 AACCCTA
*
2064466 AACCCAA
1 AACCCTA
2064473 AACCCTA
1 AACCCTA
2064480 AACC
1 AACC
2064484 TCGAACCTCA
Statistics
Matches: 134, Mismatches: 13, Indels: 34
0.74 0.07 0.19
Matches are distributed among these distances:
5 2 0.01
6 34 0.25
7 77 0.57
8 14 0.10
9 4 0.03
10 3 0.02
ACGTcount: A:0.44, C:0.46, G:0.02, T:0.09
Consensus pattern (7 bp):
AACCCTA
Found at i:2064478 original size:14 final size:13
Alignment explanation
Indices: 2064307--2064507 Score: 130
Period size: 14 Copynumber: 15.0 Consensus size: 13
2064297 TCGAACCTCG
*
2064307 AACCCGAACCCTA
1 AACCCAAACCCTA
2064320 AACCCAAAACCCTA
1 AACCC-AAACCCTA
*
2064334 AACCTCAAA-TCTCA
1 AACC-CAAACCCT-A
2064348 AATCCCAAACCCTAA
1 AA-CCCAAACCCT-A
*
2064363 AACCCTAACCCTA
1 AACCCAAACCCTA
*
2064376 AACCCTAAACCCCA
1 AACCC-AAACCCTA
2064390 AACCCAAACCCTA
1 AACCCAAACCCTA
*
2064403 AACCCCAAACCC-C
1 AA-CCCAAACCCTA
*
2064416 AA--GAAACCC-A
1 AACCCAAACCCTA
2064426 AACCCCAAA-CCTCA
1 AA-CCCAAACCCT-A
* *
2064440 AACCCCAA-CCTCG
1 AACCCAAACCCT-A
*
2064453 AACCCGAACCCTA
1 AACCCAAACCCTA
2064466 AACCCAAAACCCTA
1 AACCC-AAACCCTA
*
2064480 AACCTCGAA-CCTCA
1 AACC-CAAACCCT-A
2064494 AATCCCAAACCCTA
1 AA-CCCAAACCCTA
2064508 GACCTGAACC
Statistics
Matches: 151, Mismatches: 19, Indels: 35
0.74 0.09 0.17
Matches are distributed among these distances:
10 8 0.05
12 2 0.01
13 51 0.34
14 76 0.50
15 14 0.09
ACGTcount: A:0.43, C:0.45, G:0.02, T:0.09
Consensus pattern (13 bp):
AACCCAAACCCTA
Done.