Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2531
Parameters: 2 7 7 80 10 50 1000
Length:  87780

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
395--430
15
2.4
15
90
9
56
55
2
41
0
1.14
527--560
2
17.0
2
87
0
50
44
2
0
52
1.16
1773--1840
29
2.5
27
86
9
93
42
1
2
52
1.25
2343--2397
26
2.1
27
83
6
69
50
0
3
45
1.19
2647--2690
16
2.7
17
86
6
56
75
0
0
25
0.81
5435--5917
240
2.0
240
100
0
966
32
20
18
27
1.96
6083--6141
32
1.9
30
83
13
75
59
10
10
20
1.58
6375--6402
10
2.8
10
100
0
56
10
28
21
39
1.87
6433--6490
13
4.0
13
76
23
62
29
15
15
39
1.88
6446--6508
19
3.6
19
76
24
84
28
15
15
39
1.89
6429--6508
32
2.5
32
100
0
160
27
15
16
41
1.88
6539--6612
20
3.7
20
83
8
87
31
17
13
37
1.89
8531--8573
20
2.1
20
82
4
50
9
27
44
18
1.80
9005--9041
13
2.8
13
100
0
74
32
16
16
35
1.91
21465--21517
20
2.7
20
93
0
88
43
7
13
35
1.72
21534--21578
20
2.2
20
92
0
72
42
6
17
33
1.76
25867--29695
962
4.0
961
95
0
6445
25
21
19
34
1.96
37975--38031
20
2.8
20
91
0
87
45
10
14
29
1.78
40345--40383
17
2.3
17
81
0
51
38
17
0
43
1.50
44708--44773
16
4.1
16
92
0
105
40
0
0
59
0.98
44708--44834
32
3.8
32
76
15
123
37
2
2
58
1.24
44890--44924
16
2.1
17
94
5
63
31
5
5
57
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46406--46444
3
13.3
3
83
5
53
64
2
0
33
1.08
47269--47315
21
2.2
20
79
17
51
63
2
0
34
1.06
47334--47383
22
2.4
21
80
6
57
42
6
0
52
1.26
47414--47464
15
3.3
15
78
15
59
33
3
0
62
1.13
48798--48844
21
2.3
20
82
17
62
70
0
0
29
0.88
48798--48844
20
2.3
21
82
10
62
70
0
0
29
0.88
49934--49959
13
2.0
13
100
0
52
38
15
15
30
1.88
52167--52211
21
2.1
21
84
8
56
53
4
20
22
1.63
54013--54049
15
2.4
16
82
17
51
51
18
16
13
1.76
56059--56138
20
3.8
20
75
15
79
26
15
15
43
1.85
56124--56162
13
3.0
13
96
0
69
30
17
15
35
1.91
56283--56329
21
2.3
21
79
20
55
34
19
4
42
1.70
56285--56327
20
2.2
19
84
16
52
32
18
4
44
1.71
58732--58765
17
1.9
18
94
5
61
20
5
0
73
1.04
58739--58768
14
2.2
13
94
5
51
23
3
0
73
0.98
59444--59468
11
2.3
11
100
0
50
36
16
16
32
1.90
66101--66140
21
1.9
21
84
0
53
70
0
0
30
0.88
67099--67123
2
12.5
2
100
0
50
48
0
0
52
1.00
68543--68800
134
1.9
134
95
0
471
38
15
12
32
1.85
68800--68861
16
3.9
15
76
19
54
66
11
0
22
1.23
68800--68860
32
1.9
32
83
6
79
65
11
0
22
1.24
68984--69015
15
2.1
15
94
0
55
31
3
0
65
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
73596--74094
249
2.0
249
100
0
998
37
11
19
30
1.88
75353--75401
27
1.9
26
88
12
75
32
0
12
55
1.37
81383--81440
29
2.0
29
83
6
73
37
1
0
60
1.07
87022--87072
23
2.3
21
80
6
57
52
0
5
41
1.25
87630--87699
30
2.5
28
93
6
115
41
15
14
28
1.86

Tables:   1

The End!