genome.fa.s2532.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2532
Parameters: 2 7 7 80 10 50 1000
Length:  69688

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2723--2748	13	2.0	13	100	0	52	38	15	15	30	1.88
4966--5010	21	2.1	21	84	8	56	53	4	20	22	1.63
6814--6844	15	2.1	15	93	0	53	48	16	22	12	1.80
8859--8938	20	3.8	20	75	15	79	26	15	15	43	1.85
8924--9014	13	7.0	13	93	0	155	30	18	15	35	1.92
8925--9014	26	3.5	26	100	0	180	31	18	15	34	1.93
9137--9183	22	2.3	21	79	20	55	34	17	4	44	1.68
11557--11582	13	2.0	13	100	0	52	38	15	15	30	1.88
16091--16122	13	2.5	13	94	0	55	31	15	15	37	1.89
17092--17213	52	2.4	52	81	4	140	33	15	24	26	1.95
17146--17292	79	1.9	79	83	0	195	27	14	29	27	1.96
17227--17342	51	2.3	51	86	3	162	26	13	28	31	1.94
17100--17415	130	2.4	129	80	5	350	33	12	25	28	1.93
20017--20283	129	2.1	130	84	2	349	35	13	24	26	1.92
20164--20420	79	3.3	79	82	3	311	35	15	23	26	1.94
20166--20459	79	3.7	79	78	4	299	34	15	23	26	1.95
20163--20455	158	1.9	158	81	4	358	34	14	24	26	1.94
20396--20563	51	3.3	51	81	6	155	32	11	27	28	1.92
23012--23063	21	2.6	21	90	6	81	32	15	13	38	1.86
23734--23774	20	2.0	22	85	9	59	21	43	24	9	1.83
25758--25810	21	2.7	20	85	8	72	33	13	16	35	1.88
33046--33558	79	6.7	78	74	10	369	26	22	14	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33284--33409	67	1.9	67	88	0	189	26	22	11	39	1.87
33205--33488	146	1.9	146	82	4	349	25	22	14	38	1.91
36929--37180	110	2.3	109	84	3	335	33	12	10	42	1.78
39342--39380	12	3.2	12	81	0	51	41	0	35	23	1.55
44568--44641	30	2.5	30	95	0	130	25	17	17	39	1.91
46862--47173	79	4.0	79	84	3	371	28	25	13	32	1.94
46862--47173	156	2.0	158	84	3	416	28	25	13	32	1.94
47110--47223	51	2.2	52	83	10	146	29	26	12	31	1.92
47030--47300	130	2.1	128	82	5	314	29	26	12	31	1.93
47161--47311	79	1.9	79	84	2	205	29	26	11	33	1.91
48327--48357	13	2.4	13	100	0	62	38	12	16	32	1.86
52276--52620	105	3.3	104	70	12	272	31	11	26	29	1.92
52281--52451	51	3.3	51	79	4	198	32	11	26	29	1.92
52434--52509	27	2.8	28	88	6	102	21	21	34	23	1.97
54979--55004	13	2.0	13	100	0	52	38	15	15	30	1.88
54958--55024	33	2.0	33	88	0	98	43	16	14	25	1.86
55044--55111	19	3.9	18	76	23	83	38	14	11	35	1.83
55066--55090	13	1.9	13	100	0	50	32	16	16	36	1.90
55047--55109	32	2.0	32	96	0	117	36	15	12	34	1.86
55167--55223	21	2.7	21	97	0	105	36	19	10	33	1.86
55228--55273	1	46.0	1	100	0	92	0	0	0	100	0.00
55869--56774	55	16.3	55	88	6	1271	20	20	30	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55915--56004	26	3.3	26	66	19	67	20	18	33	27	1.96
55892--56774	166	5.3	165	93	2	1346	20	20	30	28	1.98
57740--57819	1	80.0	1	87	0	115	0	3	2	93	0.40

Tables:   1

The End!