genome.fa.s2533.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2533
Parameters: 2 7 7 80 10 50 1000
Length:  45504

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1782--1807	13	2.0	13	100	0	52	38	15	15	30	1.88
1848--1915	19	3.9	18	76	23	83	38	14	11	35	1.83
1870--1894	13	1.9	13	100	0	50	32	16	16	36	1.90
1851--1913	32	2.0	32	96	0	117	36	15	12	34	1.86
4694--4734	12	3.2	13	82	10	57	58	0	0	41	0.98
4693--4771	28	3.0	27	70	15	67	56	0	0	43	0.99
4908--4990	43	1.9	43	100	0	166	45	13	30	10	1.77
5023--5084	31	2.0	31	93	0	106	35	32	22	9	1.87
6696--6841	20	6.8	20	77	16	103	27	15	12	44	1.82
8795--8848	19	3.2	17	83	16	69	79	0	18	1	0.82
8795--8850	8	6.8	8	73	15	51	80	0	17	1	0.80
8795--8851	10	5.5	10	77	10	53	80	0	17	1	0.79
9225--9265	2	20.5	2	94	0	73	46	0	2	51	1.14
15605--15636	12	2.8	12	95	4	57	87	12	0	0	0.54
16655--17197	27	19.8	27	88	3	791	23	32	14	28	1.94
16655--17197	82	6.6	82	88	3	788	23	32	14	28	1.94
16653--17197	109	5.0	109	90	1	786	23	32	14	28	1.94
17182--17386	32	6.5	31	95	2	331	29	32	20	17	1.95
17182--17667	96	4.9	96	87	7	663	30	32	19	18	1.96
17375--17399	13	1.9	13	100	0	50	24	16	40	20	1.91
17343--17430	45	2.0	45	95	0	158	27	28	25	19	1.99
17388--17667	32	8.8	32	89	0	407	30	31	18	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17311--17463	77	2.0	77	97	0	288	28	30	22	18	1.97
18895--18952	8	6.8	8	74	14	53	81	0	17	1	0.78
18895--18953	11	5.4	11	78	8	57	81	0	16	1	0.78
26736--27193	27	16.7	27	89	2	675	24	33	13	28	1.94
26736--27193	82	5.6	81	89	2	675	24	33	13	28	1.94
26736--27212	109	4.3	109	90	2	679	24	33	13	27	1.93
27188--27383	32	6.2	32	93	3	335	29	32	19	17	1.95
27188--27824	64	9.8	64	81	7	692	30	32	18	18	1.95
27188--27824	96	6.5	96	86	5	884	30	32	18	18	1.95
27372--27396	13	1.9	13	100	0	50	24	16	40	20	1.91
27340--27427	45	2.0	45	93	0	149	28	28	23	19	1.98
27308--27460	77	2.0	77	94	0	270	28	30	21	18	1.97
27385--27824	32	13.8	32	89	0	655	30	32	18	18	1.95
29469--29515	2	23.5	2	95	0	85	46	0	2	51	1.13
31938--32295	183	2.0	183	90	0	563	34	18	18	29	1.94
33000--33556	78	7.1	79	82	3	579	27	24	12	35	1.92
33019--33556	79	6.8	79	82	4	579	27	24	13	34	1.93
33000--33564	237	2.4	237	83	2	708	28	24	12	34	1.92
33000--33556	157	3.5	157	82	5	651	27	24	12	35	1.92
35946--35983	11	3.5	11	85	10	51	47	2	0	50	1.15
38951--39001	25	2.1	24	88	3	75	54	0	1	43	1.11
38954--39008	25	2.2	25	83	6	67	56	0	1	41	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38984--39021	18	2.0	18	90	10	58	68	0	0	31	0.90
40336--40381	23	2.0	24	91	4	76	45	0	2	52	1.13
41157--41189	18	1.9	18	88	11	52	33	0	0	66	0.92

Tables:   1

The End!