Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2534
Parameters: 2 7 7 80 10 50 1000
Length:  39629

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1194--1278
27
3.2
26
74
17
86
43
0
0
56
0.99
1201--1305
6
17.7
6
70
20
53
41
0
0
58
0.98
1201--1306
44
2.6
41
76
17
103
42
0
0
57
0.98
1199--1307
56
2.0
56
84
11
149
44
0
0
55
0.99
1199--1273
24
3.0
24
78
7
78
45
0
0
54
0.99
1208--1289
21
4.0
21
73
16
73
41
0
0
58
0.98
1239--1296
21
2.8
20
82
12
73
41
0
0
58
0.98
1239--1303
21
3.2
21
72
25
59
41
0
0
58
0.98
1696--1751
19
3.2
19
71
23
59
51
0
0
48
1.00
1910--1966
20
2.8
20
79
10
62
38
3
7
50
1.46
2643--2690
16
2.9
16
75
25
55
45
0
2
52
1.12
2699--2755
25
2.2
26
84
9
82
43
8
0
47
1.34
3362--3404
18
2.5
17
82
14
52
65
0
0
34
0.93
3436--3460
13
1.9
13
100
0
50
56
0
0
44
0.99
4515--4539
13
1.9
13
100
0
50
40
4
0
56
1.18
5069--5124
21
2.7
21
78
10
62
73
0
0
26
0.84
5071--5126
20
2.7
21
70
16
53
73
0
0
26
0.84
5050--5126
36
2.1
36
83
4
93
68
0
0
31
0.90
5071--5123
27
2.0
27
85
7
72
73
0
0
26
0.83
5070--5126
9
6.4
9
80
11
64
73
0
0
26
0.83
5070--5124
17
3.1
18
82
14
69
74
0
0
25
0.82
7222--7255
14
2.3
15
90
5
52
44
0
2
52
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7294--7386
19
5.5
17
66
22
52
55
0
0
44
0.99
7356--7398
20
2.2
19
83
4
50
58
0
0
41
0.98
7421--7452
6
5.2
6
92
7
55
53
0
0
46
1.00
10399--10444
24
1.9
24
91
8
76
45
28
8
17
1.78
10449--10531
28
3.0
28
96
0
148
49
19
10
20
1.78
12435--12480
21
2.1
22
84
4
58
19
30
19
30
1.97
15026--15071
24
1.9
24
91
8
76
45
28
8
17
1.78
15076--15158
28
3.0
28
92
0
139
49
18
10
21
1.77
19494--19551
18
3.3
18
75
2
64
60
0
3
36
1.14
29897--29928
2
16.0
2
93
0
55
53
0
0
46
1.00
32120--32159
21
1.9
21
85
10
55
60
0
2
37
1.11
32386--32413
2
14.0
2
100
0
56
50
0
0
50
1.00
34950--35061
18
6.4
17
70
23
65
57
0
2
39
1.19
36802--36891
46
2.0
46
95
0
162
31
13
12
43
1.81
37133--37169
2
18.5
2
100
0
74
51
0
0
48
1.00
37205--37241
2
18.5
2
100
0
74
48
0
0
51
1.00
38686--38710
2
12.5
2
100
0
50
52
0
0
48
1.00

Tables:   1

The End!