genome.fa.s2537.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2537
Parameters: 2 7 7 80 10 50 1000
Length:  66355

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2416--2492	20	3.9	18	85	11	91	36	15	16	31	1.91
3414--3596	63	2.9	62	77	11	192	26	14	16	42	1.87
3981--4399	100	4.2	98	76	6	326	35	19	19	25	1.95
4077--4399	150	2.2	149	81	6	357	36	18	19	25	1.94
3981--4450	50	9.5	50	76	7	246	35	19	19	25	1.95
4032--4417	150	2.6	150	78	4	327	36	19	18	25	1.94
8666--8718	20	2.6	21	88	8	74	28	13	15	43	1.84
10536--10588	20	2.7	20	85	5	63	26	13	13	47	1.79
15433--15477	24	2.0	23	87	12	67	46	0	28	24	1.53
24854--24908	20	2.7	20	82	5	65	29	14	10	45	1.79
26244--26486	79	3.1	79	77	6	251	29	19	11	39	1.87
26246--26534	79	3.7	77	73	12	230	29	21	13	36	1.91
32616--32719	32	3.4	31	80	9	122	25	29	13	31	1.94
32616--32719	31	3.3	33	81	13	107	25	29	13	31	1.94
32609--32741	31	4.4	29	75	12	106	24	30	14	30	1.94
32747--37160	62	70.2	62	76	7	3364	25	22	18	33	1.97
34737--34891	77	2.0	76	81	6	179	24	25	14	35	1.93
35562--35592	15	2.1	15	94	5	55	16	35	6	41	1.74
35500--35655	78	2.0	76	85	2	204	22	26	14	35	1.93
35376--35774	202	2.0	200	85	4	534	23	24	18	34	1.96
36551--36711	67	2.4	66	84	2	196	24	21	18	36	1.95
37209--37620	62	6.6	61	76	6	333	25	21	18	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37077--37373	161	1.8	161	82	6	377	25	18	19	36	1.95
37582--37659	39	2.0	39	89	0	120	17	33	16	32	1.93
37598--37673	39	2.0	37	82	7	91	21	30	19	28	1.97
37621--38650	62	16.5	62	80	5	903	25	21	19	33	1.97
38661--41347	62	42.8	62	73	10	1330	24	21	18	35	1.96
38495--38822	169	1.9	169	83	4	421	22	23	20	33	1.97
38663--39052	129	3.1	123	77	7	307	23	21	18	36	1.95
38663--42136	125	27.4	124	70	11	868	24	22	18	34	1.96
39351--39720	202	1.8	200	83	4	483	23	22	18	35	1.96
40820--40967	74	2.0	74	86	4	208	22	25	17	34	1.96
41046--41288	67	3.7	66	75	4	190	25	21	18	35	1.95
41080--41220	66	2.1	66	82	1	165	23	21	17	37	1.94
41272--41426	76	2.0	76	81	6	179	25	27	14	32	1.95
41349--41486	62	2.2	61	79	6	152	25	26	15	31	1.96
41225--41592	138	2.7	135	79	3	421	25	24	16	33	1.96
41487--42149	62	10.6	62	72	5	429	24	22	18	35	1.96
41487--42238	124	6.1	123	72	11	402	24	22	18	34	1.96
42406--42573	61	2.7	62	76	5	153	21	26	17	33	1.96
42726--43040	133	2.4	129	84	5	395	24	23	18	33	1.96
42314--43040	66	11.2	66	73	10	393	24	23	17	34	1.96
42575--43094	62	8.2	60	76	9	342	24	23	17	35	1.96
42728--43096	66	5.7	62	78	10	280	23	24	18	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43021--43252	122	1.9	123	82	2	297	23	25	16	34	1.96
46431--46470	13	3.1	13	100	0	80	30	15	15	40	1.87
46454--46510	19	2.9	19	81	2	69	31	12	17	38	1.87
46540--46604	33	2.0	33	84	6	87	33	10	18	36	1.86
51730--51811	28	2.9	28	80	7	96	26	17	31	24	1.97
51789--52133	105	3.3	104	70	12	272	31	11	26	29	1.92
51794--51964	51	3.3	51	79	4	198	32	11	26	29	1.92
51947--52022	27	2.8	28	88	6	102	21	21	34	23	1.97
54489--54514	13	2.0	13	100	0	52	38	15	15	30	1.88
54468--54534	33	2.0	33	88	0	98	43	16	14	25	1.86
54554--54621	19	3.9	18	76	23	83	38	14	11	35	1.83
54576--54600	13	1.9	13	100	0	50	32	16	16	36	1.90
54557--54619	32	2.0	32	96	0	117	36	15	12	34	1.86
54677--54733	21	2.7	21	97	0	105	36	19	10	33	1.86
55348--56135	55	14.3	55	92	4	1179	20	20	30	28	1.98
57117--57169	1	53.0	1	84	0	70	0	1	5	92	0.45

Tables:   1

The End!