Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2538
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33494
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Found at i:3034 original size:476 final size:475
Alignment explanation
Indices: 54--4692 Score: 7717
Period size: 475 Copynumber: 9.8 Consensus size: 475
44 CCTTCTTGTT
* * * * ** *
54 GGACAAAAGAC-TTGAAGGTGTTCTTGTGCGGGGAAATCAGTGCTTCGCCACTATTTTCCTTAAG
1 GGACAAAAGACATTGAAGTTTTTCTTTTGCGTGGAAATCTTTTCTTCGCC-CTATTTTCCTTAA-
* * *
118 AGTTAAAACAGGTGTCATCCCTTGAATAAGCACAAGCA-CGATTCTCCT-A-AG-CTCCTGTCTT
64 A-AT-GAA-A-GT-TCATCCCTTGAATAAG-ACAAGCATCGATTCTCCTAACAGTCTCCTTTCTT
* *
179 TTCAAGATTGGGAAGCCAAAACACATT-CTTATTGTTAGGATACCCAACATTGATGCTTTGGTGT
123 TTCAAGATTGGGAAGCCAAAACACATTGC-CATTGTTAGGATACCCGACATTGATGCTTTGGTGT
* * ** * * * *
243 CTCAGGAAAAGATTTTCTTCACGTTGTTTTTGATAGAATCAACAG-TTGTCTCTTAAATAAGCTG
187 CTCAAGAAAAGCTTTTCTTCACGTCATTTTTAATAGAATCAAC-GTTTATCTTTTAAATAAGCCG
* *
307 AACTTTAATACTCAAACTAAACCTCATTCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCA
251 AACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCA
372 TTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATCGTTGTGA
316 TTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATCGTTGTGA
* *
437 AGTCTAAGTTCGTGCCTTAAATGAGACAATATGGATTCTAGTAATGATCTTCATTCTTTTACCGA
381 AGTCTAAGTTCGTGCCTCAAATGAGACAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGA
502 TAAAGGACTACAAACACGTTCTCCTCTTTA
446 TAAAGGACTACAAACACGTTCTCCTCTTTA
*
532 GGACAAAAGACATTGAAGTTTTTCTTTTGCATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAA
1 GGACAAAAGACATTGAAGTTTTTCTTTTGCGTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAA
*
597 TGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAGGAT
66 TGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGAT
* *
662 TGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCATGAAA
131 TGGGAAGCCAAAACACATTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAA
* * * * * *
727 AGCTTTTCTTCACGTCGTTTTTGATAGAATCAACGTTTGTCTCTTAAATAAGCTGAACTTTAATA
196 AGCTTTTCTTCACGTCATTTTTAATAGAATCAACGTTTATCTTTTAAATAAGCCGAACATTAATA
* * *
792 CTCAAACTAATCCTCATTC-TTTGAGATTTAGGGCACCATAAACATAGTTTTCTCATTAGGATAT
261 CTCAAACTAATCCTCATTCTTTTTAGATTTA-GGCACCATAAACATAGTCTTCTCATTAGGATAC
* *
856 ACGATATTGATGCTATGG-TTCGCTACAAAGGCTTT-TTCCCTACCAATCGTTGTGAAGTCTAAG
325 ACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCC-ACCAATCGTTGTGAAGTCTAAG
* * * *
919 TTCGGGCCTCAAATGAGACAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATTATGCAC
389 TTCGTGCCTCAAATGAGACAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGGAC
*
984 TACAAACACATTCTCCTCTTTA
454 TACAAACACGTTCTCCTCTTTA
*
1006 GGACAAAAGACATTGAAGTTTTTCTTTTGCGTGCAAATCTTTTCTTCGCCCTATTTTCCTTAAAA
1 GGACAAAAGACATTGAAGTTTTTCTTTTGCGTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAA
* * *
1071 TTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAATAGTCTCCTTTCTTTTCAAGAC
66 TGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGAT
*
1136 TGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAA
131 TGGGAAGCCAAAACACATTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAA
* * *
1201 AGCTTTTCTTCGCGTCATTTTTAATAGAATCAACGTTTATCTCTTAAATATGCCGAACATTAATA
196 AGCTTTTCTTCACGTCATTTTTAATAGAATCAACGTTTATCTTTTAAATAAGCCGAACATTAATA
1266 CTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACA
261 CTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACA
1331 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATCGTTGTGAAGTCTAAGTT
326 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATCGTTGTGAAGTCTAAGTT
1396 CGTGCCTCAAATGAGACAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGGACTA
391 CGTGCCTCAAATGAGACAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGGACTA
*
1461 CAAACACGTTCTCCTCTTGA
456 CAAACACGTTCTCCTCTTTA
1481 GGACAAAAGACATTGAAGTTTTTCTTTTGCGTGGAAATC-TTTCGTTCGCCCTATTTTCCTTAAA
1 GGACAAAAGACATTGAAGTTTTTCTTTTGCGTGGAAATCTTTTC-TTCGCCCTATTTTCCTTAAA
*
1545 ATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGA
65 ATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGA
*
1610 TTGGGAAGCTAAAACACATTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAA
130 TTGGGAAGCCAAAACACATTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAA
*
1675 AAGCTTTTCTTCACGTCATTTTTAATAGAATCAACGTTTATCTTTTAAATATGCCGAACATTAAT
195 AAGCTTTTCTTCACGTCATTTTTAATAGAATCAACGTTTATCTTTTAAATAAGCCGAACATTAAT
1740 ACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATAC
260 ACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATAC
* *
1805 ACGATATTCATGCTTTGGTTTCACAACAAAGGCTTTCTTCCCACCAATCGTTGTGAAGTCTAAGT
325 ACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATCGTTGTGAAGTCTAAGT
*
1870 TCGTGCCTCAAATGAGACCATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGGACT
390 TCGTGCCTCAAATGAGACAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGGACT
*
1935 ACAAACACGTTCTCCTCTTGA
455 ACAAACACGTTCTCCTCTTTA
*
1956 GGACAAAAGACATTGAAGTTTTTCTTTTGCGTGGAAATCTTTCCTTCGCCCTATTTTCCTTAAAA
1 GGACAAAAGACATTGAAGTTTTTCTTTTGCGTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAA
*
2021 TGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAATCTCCTTTCTTTTCAAGAT
66 TGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGAT
*
2086 TGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAA
131 TGGGAAGCCAAAACACATTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAA
*
2151 AGCTTTTCTTCACGTCATTTTTAATAGAATCAACGTTTATCTTTTAAATATGCCGAACATTAATA
196 AGCTTTTCTTCACGTCATTTTTAATAGAATCAACGTTTATCTTTTAAATAAGCCGAACATTAATA
2216 CTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACA
261 CTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACA
2281 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATCGTTGTGAAGTCTAAGTT
326 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATCGTTGTGAAGTCTAAGTT
2346 CGTGCCTCAAATGAGACAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGGACTA
391 CGTGCCTCAAATGAGACAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGGACTA
*
2411 CAAACACGTTCTCCTCTTGA
456 CAAACACGTTCTCCTCTTTA
2431 GGACAAAAGACATTGAAGTTTTTCTTTTGCGTGGAAATC-TTTCGTTCGCCCTATTTTCCTTAAA
1 GGACAAAAGACATTGAAGTTTTTCTTTTGCGTGGAAATCTTTTC-TTCGCCCTATTTTCCTTAAA
* *
2495 ATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCCTTTCAAGA
65 ATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGA
*
2560 TTGGGAAGCTAAAACACATTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAA
130 TTGGGAAGCCAAAACACATTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAA
*
2625 AAGCTTTTCTTCACGTCATTTTTAATAGAATCAACGTTTATCTTTTAAATATGCCGAACATTAAT
195 AAGCTTTTCTTCACGTCATTTTTAATAGAATCAACGTTTATCTTTTAAATAAGCCGAACATTAAT
2690 ACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATAC
260 ACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATAC
* *
2755 ACGATATTCATGCTTTGGTTTCACAACAAAGGCTTTTCTTCCCACCAATCGTTGTGAAGTCTAAG
325 ACGATATTGATGCTTTGGTTTCGCAACAAAGGC-TTTCTTCCCACCAATCGTTGTGAAGTCTAAG
*
2820 TTCGTGCCTCAAATGAGACCATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGGAC
389 TTCGTGCCTCAAATGAGACAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGGAC
*
2885 TACAAACACGTTCTCCTCTTGA
454 TACAAACACGTTCTCCTCTTTA
*
2907 GGACAAAAGACATTGAAGTTTTTCTTTTGCGTGGAAATCTTTCCTTCGCCCTATTTTCCTTAAAA
1 GGACAAAAGACATTGAAGTTTTTCTTTTGCGTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAA
*
2972 TGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAATCTCCTTTCTTTTCAAGAT
66 TGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGAT
*
3037 TGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAA
131 TGGGAAGCCAAAACACATTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAA
*
3102 AGCTTTTCTTCACGTCATTTTTAATAGAATCAACGTTTATCTTTTAAATATGCCGAACATTAATA
196 AGCTTTTCTTCACGTCATTTTTAATAGAATCAACGTTTATCTTTTAAATAAGCCGAACATTAATA
3167 CTCAAACTAATCCTCATTC-TTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACA
261 CTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACA
3231 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATCGTTGTGAAGTCTAAGTT
326 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATCGTTGTGAAGTCTAAGTT
3296 CGTGCCTCAAATGAGACAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGGACTA
391 CGTGCCTCAAATGAGACAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGGACTA
3361 CAAACACGTTCTCCTCTTTA
456 CAAACACGTTCTCCTCTTTA
* * * * *
3381 GGACAAAAGACATTCAAGTTTTTCTTTTGCATGGAAATATTTTCGTCGCCCTATTTTTCTTAAAA
1 GGACAAAAGACATTGAAGTTTTTCTTTTGCGTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAA
3446 TGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGAT
66 TGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGAT
* *
3511 TGGGAAGCTAAAACACATTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCT-TAGAAA
131 TGGGAAGCCAAAACACATTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAG-AA
*
3575 AAGCTTTTCTTCACGTCGTTTTTAATAGAATCAACGTTTATCTTTTAAATAAGCCGAACATTAAT
195 AAGCTTTTCTTCACGTCATTTTTAATAGAATCAACGTTTATCTTTTAAATAAGCCGAACATTAAT
*
3640 ACTCAAACTAATCCTCATTCTTCTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATAC
260 ACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATAC
* *
3705 ACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTTCCACCAATCATTGTGAAGTCTAAGT
325 ACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATCGTTGTGAAGTCTAAGT
* * *
3770 TCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGAACTTCATTCTTTTCCCGATAAAGCAC
390 TCGTGCCTCAAATGAGAC-AATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGGAC
* *
3835 TACAAACACATTCTCCCCTTTA
454 TACAAACACGTTCTCCTCTTTA
* * *
3857 GGACAAAAGACATTGAAGTTTTTCCTTTT-CCTGGAAATCTTTTCTTCGCCATATTTTGCTTAAA
1 GGACAAAAGACATTGAAGTTTTT-CTTTTGCGTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAA
3921 ATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGA
65 ATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGA
* * *
3986 TTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGATGCTTTGCTGTCTTAAGAA
130 TTGGGAAGCCAAAACACATTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAA
* * * * * *
4051 AAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTTGTCTATTAAATAAGCCGAACATTAAT
195 AAGCTTTTCTTCACGTCATTTTTAATAGAATCAACGTTTATCTTTTAAATAAGCCGAACATTAAT
* * * * *
4116 ACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCATAAATATAGTCTTCTCATTAGGATAC
260 ACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATAC
* * * *
4181 ACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTTCCCACCAATCATTGTAAAGTCTAAGT
325 ACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATCGTTGTGAAGTCTAAGT
* **
4246 TCGT-CCGTCAAATGAGACAAATATGGATTCTAGTAAAGATCTTCATTCTTTTTCCGATAAACCA
390 TCGTGCC-TCAAATGAGAC-AATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGGA
**
4310 CTACAAACATATTCTCCTCTTTA
453 CTACAAACACGTTCTCCTCTTTA
*
4333 GGACAAAAGACATTGAAGTTTTTCTTTTGTGTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAA
1 GGACAAAAGACATTGAAGTTTTTCTTTTGCGTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAA
* *
4398 TTAAAGTTTATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGAT
66 TGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGAT
* * * *
4463 TGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCGACATTGATGCTTTGCTGTCTTAAGAAA
131 TGGGAAGCCAAAACACATTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAA
**** * * * * *
4528 AGCTTTTCTTTGTATCGTTTTTGATAGAATCAACGTTTGTCTATTAAAGAAGCCGAACATTAATA
196 AGCTTTTCTTCACGTCATTTTTAATAGAATCAACGTTTATCTTTTAAATAAGCCGAACATTAATA
* * * * *
4593 CTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCATAAATATAGTCTTCTCATTAGGATACA
261 CTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACA
*
4658 CGATATTGATGCTTTGGTTTCGCAATAAAGGCTTT
326 CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTT
4693 TTTTTGCCCT
Statistics
Matches: 3985, Mismatches: 152, Indels: 50
0.95 0.04 0.01
Matches are distributed among these distances:
471 7 0.00
472 26 0.01
473 10 0.00
474 832 0.21
475 1809 0.45
476 1236 0.31
477 11 0.00
478 24 0.01
479 30 0.01
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (475 bp):
GGACAAAAGACATTGAAGTTTTTCTTTTGCGTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAA
TGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGAT
TGGGAAGCCAAAACACATTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAA
AGCTTTTCTTCACGTCATTTTTAATAGAATCAACGTTTATCTTTTAAATAAGCCGAACATTAATA
CTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACA
CGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATCGTTGTGAAGTCTAAGTT
CGTGCCTCAAATGAGACAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGGACTA
CAAACACGTTCTCCTCTTTA
Found at i:5442 original size:792 final size:794
Alignment explanation
Indices: 3908--5471 Score: 2630
Period size: 792 Copynumber: 2.0 Consensus size: 794
3898 TTCTTCGCCA
*
3908 TATTTTGCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCC
1 TATTTTGCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAATCTCC
3973 TTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGATGCTTT
66 TTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGATGCTTT
* * *
4038 GCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTTGTCTATTAAATAA
131 GCTGCCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTTTGTCTATTAAATAA
* * * *
4103 GCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCATAAATATAGTCTT
196 GCCGAACATTAATACTCAAACTAATCCTCATTCCATTTAGATTGAGGCACCATAAACATAGTCTT
* *
4168 CTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTTCCCACCAATCATT
261 CTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATCATT
*
4233 GTAAAGTCTAAGTTCGTCCGTCAAATGAGACAAATATGGATTCTAGTAAAGATCTTCATTCTTTT
326 GTAAAGTCTAAGTTCGGCCGTCAAATGAGACAAATATGGATTCTAGTAAAGATCTTCATTCTTTT
* * *
4298 TCCGATAAACCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGT
391 TCCGATAAACCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTCAAGTTTTTCTTTTGC
* *
4363 GTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTTATCCCTTGAATAAGACAAGCA
456 CTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCA
*
4428 TCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAG
521 TCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCATTGTTAG
* *** *
4493 GATACCCGACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTTGTATCGTTTTTGATAGAAT
586 GATACCCGACATTGATGCTTTGCTGTCTCAAGAAAAGCTTTTCTTCACATCGTTTTTAATAGAAT
* *
4558 CAACGTTTGTCTATTAAAGAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTG
651 CAACATTTGTCTATTAAAGAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTG
* *
4623 AGGCCCCATAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAG
716 AGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAG
4688 GCTTTTTTTTGCCC
781 GCTTTTTTTTGCCC
* *
4702 TATTTTTCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAACAATCTCC
1 TATTTTGCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAATCTCC
*
4767 TTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGATGGTTT
66 TTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGATGCTTT
* * *
4832 GGTGCCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTGATAGAATCAACGTTTGTCTCTTAAATAA
131 GCTGCCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTTTGTCTATTAAATAA
*
4897 GCCGAACATTAATACTCAAACTAATCCTCATTCCATTTAGATTTAGGCACCATAAACATAGTCTT
196 GCCGAACATTAATACTCAAACTAATCCTCATTCCATTTAGATTGAGGCACCATAAACATAGTCTT
*
4962 CTCATTAGGATACACGATATTGATGCTTTGGTTT-GCAACAAAGGCTTTCTTCCCACCAATCGTT
261 CTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATCATT
* *
5026 GTGAAGTCTAAGTTCGGGCC-TCAAATGAGAC-AATATGGATTCTAGTAATGATCTTCATTCTTT
326 GTAAAGTCTAAGTTC-GGCCGTCAAATGAGACAAATATGGATTCTAGTAAAGATCTTCATTCTTT
* *
5089 TTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGTCATTCAAGTTTTTCTTTTG
390 TTCCGATAAACCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTCAAGTTTTTCTTTTG
* * *
5154 CCTGGAAATCTTTTCTTCGCCCTATTTTTCTTAAAATTAATGTTCATCCTTTGAATAAGACAAGC
455 CCTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGC
* *
5219 ATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCTAAAACACATTGCCATTGTTA
520 ATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCATTGTTA
* *
5284 GGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTAATAGAA
585 GGATACCCGACATTGATGCTTTGCTGTCTCAAGAAAAGCTTTTCTTCACATCGTTTTTAATAGAA
* * * * *
5349 TCAACATTTGTCTCTTAAATATGCCGAACGTTAATACTCAAACTAATCCTCATTCTTTTTAGATT
650 TCAACATTTGTCTATTAAAGAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATT
* *
5414 TAGGCACCATAAACGTAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCG
715 GAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCG
5472 TAACAAAAGA
Statistics
Matches: 717, Mismatches: 52, Indels: 4
0.93 0.07 0.01
Matches are distributed among these distances:
792 383 0.53
793 52 0.07
794 282 0.39
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36
Consensus pattern (794 bp):
TATTTTGCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAATCTCC
TTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGATGCTTT
GCTGCCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTTTGTCTATTAAATAA
GCCGAACATTAATACTCAAACTAATCCTCATTCCATTTAGATTGAGGCACCATAAACATAGTCTT
CTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATCATT
GTAAAGTCTAAGTTCGGCCGTCAAATGAGACAAATATGGATTCTAGTAAAGATCTTCATTCTTTT
TCCGATAAACCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTCAAGTTTTTCTTTTGC
CTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCA
TCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCATTGTTAG
GATACCCGACATTGATGCTTTGCTGTCTCAAGAAAAGCTTTTCTTCACATCGTTTTTAATAGAAT
CAACATTTGTCTATTAAAGAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTG
AGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAG
GCTTTTTTTTGCCC
Found at i:6682 original size:474 final size:476
Alignment explanation
Indices: 4689--8811 Score: 6699
Period size: 476 Copynumber: 8.7 Consensus size: 476
4679 GCAATAAAGG
* * *
4689 CTTTTTTTTGCCCTATTTTTCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCT
1 CTTTTCTTCGCCCTATTTTTCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
* *
4754 CCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCATTGTTAGGATACCCG
* * * *
4819 ACATTGATGGTTTGGTGCCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTAATAGAATCAACGTTT
*
4884 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCATTTAGATTTAGGCACCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACCA
4949 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTT-GCAACAAAGGCTTTCTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTT
*
5013 CCCACCAATCGTTGTGAAGTCTAAGTTCGGGCCTCAAATGAGAC-AATATGGATTCTAGTAATGA
326 CCCACCAATCGTTGTGAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGA
* *
5077 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGTCATTCAA
391 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
5142 GTTTTTCTTTTGCCTGGAAAT
456 GTTTTTCTTTTGCCTGGAAAT
* * *
5163 CTTTTCTTCGCCCTATTTTTCTTAAAATTAATGTTCATCCTTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
*
5228 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCTAAAACACATTGCCATTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCATTGTTAGGATACCCG
* *
5293 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTAATAGAATCAACATTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTAATAGAATCAACGTTT
* * *
5358 GTCTCTTAAATATGCCGAACGTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACCA
* * * * *
5423 TAAACGTAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGTAACAAAAGATTTTTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTT
* * *
5488 CCCACCAATCGTAGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTGGTAATGA
326 CCCACCAATCGTTGTGAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGA
* * *
5553 ACTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCCCTTTAGGACAAAAGACATTGAA
391 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
5618 GTTTTTCCTTTT-CCTGGAAAT
456 GTTTTT-CTTTTGCCTGGAAAT
* * *
5639 CTTTTCTTCGCCATATTTTGCTTAAAATGAAAGTTCATCCTTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
*
5704 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCATTGTTAGGATACCCG
* * * *
5769 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTAATAGAATCAACGTTT
* * * *
5834 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACCA
* * * *
5899 TAAATATAGTCTTCTTATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTT
* * *
5964 CCCACCAATCGTTGTAAAGTCTAAGTTCGTGCGTTAAATGAGACAAATATGGATTCTAGTAATGA
326 CCCACCAATCGTTGTGAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGA
* * * * *
6029 TCTTCATTCTTTTTCTGGTGAAGCACTACAAACACATTCTGCTCTTTAGGAAAAAAGACATTGAA
391 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
*
6094 GTTTTTCTTTTGCTTGGAAAT
456 GTTTTTCTTTTGCCTGGAAAT
* * * **
6115 CTTTTCTTCGCCCTATTTTCCTTAAAATTAATGTTCATCAGTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
* *
6180 CCTAACAGTCTCCTTTCTTTTTAAGATTGGGAAGCTAAAACACATTGCCATTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCATTGTTAGGATACCCG
** * * *
6245 ACATTGATTATTTGGTGTCTCACGAAAAGCTTTTCTTCGCGTCATTATTAATAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTAATAGAATCAACGTTT
* * * * *
6310 GTCTCTAAAATATGCCGAACATTAAAACTCAAACTAATCCTCATTCTTTTTAGATTTACGCACCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACCA
* * *
6375 TAAACATAGTATTCTCATTAGCATACACGATATTGATGCTTTGG-TTCACAACAAAGGCTTTCTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTT
*
6439 CCCACCAATCGTTGTGAAGTCTAAGTTCGGGCCTCAAATGAGAC-AATATGGATTCTAGTAATGA
326 CCCACCAATCGTTGTGAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGA
* * *
6503 TCTTCATTCTTTTTCCGATAAAGGACTACAAACACGTTCTCCTCTTGAGGACAAAAGACATTGAA
391 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
*
6568 GTTTTTCTTTTGCGTGGAAAT
456 GTTTTTCTTTTGCCTGGAAAT
* *
6589 CTTTCCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
* *
6654 CCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCTATTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCATTGTTAGGATACCCG
* * *
6719 ACATTGATGCTTTGGCGTCTCAAGAAAAGCTTTTCTTCACGTCATTTTTAATAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTAATAGAATCAACGTTT
* * *
6784 ATCTTTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATT-CTTTTAGATTTAGGCACCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACCA
6848 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTT
6913 CCCACCAATCGTTGTGAAGTCTAAGTTCGTGCCTCAAATGAGAC-AATATGGATTCTAGTAATGA
326 CCCACCAATCGTTGTGAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGA
* * *
6977 TCTTCATTCTTTTTCCGATAAAGGACTACAAACACGTTCTCCTCTTTAGGACAAAAGACATTCAA
391 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
*
7042 GTTTTTCTTTTGCATGGAAAT
456 GTTTTTCTTTTGCCTGGAAAT
* *
7063 ATTTTCGTCGCCCTATTTTTCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
*
7128 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCTAAAACACATTGCCATTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCATTGTTAGGATACCCG
* *
7193 ACATTGATGCTTTGGTGTCT-TAGAAAAAGCTTTTCTTCACGTCGTTTTTAATAGAATCAACGTT
131 ACATTGATGCTTTGGTGTCTCAAG-AAAAGCTTTTCTTCGCGTCGTTTTTAATAGAATCAACGTT
* *
7257 TATCTTTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATT-CTTCTTAGATTTAGGCAC
195 TGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTT-TTAGATTTAGGCAC
7321 CATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTC
259 CATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTC
7386 TTCCCACCAATCGTTGTGAAGTCTAAGTTCGTGCCTCAAATGAGAC-AATATGGATTCTAGTAAT
324 TTCCCACCAATCGTTGTGAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAAT
* * *
7450 GATCTTGATTCTTTTTTCGATAAAGCACTACAAACACATTCTCCTTTTTAGGACAAAAGACATTG
389 GATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTG
7515 AAGTTTTTCTTTTGCCTGGAAAT
454 AAGTTTTTCTTTTGCCTGGAAAT
* *
7538 CTTTTCTTCGCCCTATTTTTCTTAAAATGAAAGTTCATCCCTTGAACAAGACAAGCATCAATTCT
1 CTTTTCTTCGCCCTATTTTTCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
*
7603 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCTAAAACACATTGCCATTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCATTGTTAGGATACCCG
*
7668 ACATTGATGCTTTGGTGTCTC-AGAAAAAGCTTTTCTTCACGTCGTTTTTAATAGAATCAACGTT
131 ACATTGATGCTTTGGTGTCTCAAG-AAAAGCTTTTCTTCGCGTCGTTTTTAATAGAATCAACGTT
* * *
7732 TGTCTCTTAAATATGCCGAACGTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACC
195 TGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACC
7797 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCT
260 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCT
*
7862 TTCCACCAATCGTTGTGAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATG
325 TCCCACCAATCGTTGTGAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATG
* *
7927 AACTTCATTC-TTTTCCTGATAAAGCACTACAAACACATTCTCCCCTTTAGGACAAAAGACATTG
390 ATCTTCATTCTTTTTCC-GATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTG
*
7991 AAGTTTTTCCTTTT-CCAGGAAAT
454 AAGTTTTT-CTTTTGCCTGGAAAT
* *
8014 CTTTTCTTCGCCATATTTTGCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
*
8079 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCATTGTTAGGATACCCG
* * * *
8144 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTAATAGAATCAACGTTT
* * * *
8209 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACCA
* * *
8274 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTT
* *
8339 CCCACCAATCGTTGTAAAGTCTAAGTTCGT-CCGTCAAATGAGACAAATATGGATTCTAGTAAAG
326 CCCACCAATCGTTGTGAAGTCTAAGTTCGTGCC-TCAAATGAGACAAATATGGATTCTAGTAATG
* *
8403 ATCTTCATTCTTTTTCCGATAAACCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGA
390 ATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGA
*
8468 AGTTTTTCTTTTGCGTGGAAAT
455 AGTTTTTCTTTTGCCTGGAAAT
* *
8490 CTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
* *
8555 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCATTGTTAGGATACCCG
* * * ** *
8620 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTTGTATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTAATAGAATCAACGTTT
* * * * *
8685 GTCTATTAAAGAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACCA
* *
8750 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTT
8812 TCTTTGCCCT
Statistics
Matches: 3415, Mismatches: 218, Indels: 30
0.93 0.06 0.01
Matches are distributed among these distances:
473 61 0.02
474 999 0.29
475 707 0.21
476 1630 0.48
477 18 0.01
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (476 bp):
CTTTTCTTCGCCCTATTTTTCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCATTGTTAGGATACCCG
ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTAATAGAATCAACGTTT
GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACCA
TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTT
CCCACCAATCGTTGTGAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGA
TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
GTTTTTCTTTTGCCTGGAAAT
Found at i:9385 original size:794 final size:794
Alignment explanation
Indices: 8014--18324 Score: 4566
Period size: 794 Copynumber: 13.0 Consensus size: 794
8004 TCCAGGAAAT
* * *
8014 CTTTTCTTCGCCATATTTTGCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
*
8079 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCG
8144 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTT
8209 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
8274 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
261 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
8339 CCCACCAATCGTTGTAAAGTCTAAGTTCGTCCGTCAAATGAGACAAATATGGATTCTAGTAAAGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGTCCGTCAAATGAGACAAATATGGATTCTAGTAAAGA
8404 TCTTCATTCTTTTTCCGATAAACCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGAA
391 TCTTCATTCTTTTTCCGATAAACCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGAA
*
8469 GTTTTTCTTTTGCGTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTG
456 GTTTTTCTTTTGCGTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTG
8534 AATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACA
521 AATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACA
* *
8599 ATGCCTTTGTTAGGATACCCGACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTTGTATCG
586 ATGCCTTTGTTAGGATACCCGACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCG
8664 TTTTTGATAGAATCAACGTTTGTCTATTAAAGAAGCCGAACATTAATACTCAAACTAATCCTTAT
651 TTTTTGATAGAATCAACGTTTGTCTATTAAAGAAGCCGAACATTAATACTCAAACTAATCCTTAT
8729 TCCTTTTAGATTGAGGCCCCATAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG
716 TCCTTTTAGATTGAGGCCCCATAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG
8794 TTTCGCAATAAAGG
781 TTTCGCAATAAAGG
*
8808 CTTTTCTTTGCCCTATTTTTCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
8873 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCG
* *
8938 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTTGTATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTT
9003 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
9068 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
261 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
9133 CCCACCAATCGTTGTAAAGTCTAAGTTCGTCCGTCAAATGAGACAAATATGGATTCTAGTAAAGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGTCCGTCAAATGAGACAAATATGGATTCTAGTAAAGA
9198 TCTTCATTCTTTTTCCGATAAACCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGAA
391 TCTTCATTCTTTTTCCGATAAACCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGAA
*
9263 GTTTTTCTTTTGCGTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTG
456 GTTTTTCTTTTGCGTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTG
9328 AATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACA
521 AATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACA
*
9393 TTGCCTTTGTTAGGATACCCGACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCG
586 ATGCCTTTGTTAGGATACCCGACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCG
*
9458 TTTTTGATAGAATCAACGTTTGTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTAT
651 TTTTTGATAGAATCAACGTTTGTCTATTAAAGAAGCCGAACATTAATACTCAAACTAATCCTTAT
9523 TCCTTTTAGATTGAGGCCCCATAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG
716 TCCTTTTAGATTGAGGCCCCATAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG
9588 TTTCGCAATAAAGG
781 TTTCGCAATAAAGG
* * ** * * * * ** * ** *
9602 CTTTT-TTCCCACCAATCGTT-GTAAAGTCT-AAGTTCGTCCGTCAAATGAGACAAATATGGATT
1 CTTTTCTTCGC-CCTATTTTTCTTAAAAT-TAAAGTTCATCCCTTGAATAAGACAAGCATCGATT
** * * * * * * * * *
9664 CTAGTAA-AGATCTTCATTCTTTTTC-CGA-T--AAACCACTACAAACATATTCTCCTCT-TTAG
64 CTCCTAACAG-TCTCCTTTC-TTTTCAAGATTGGGAAGC-C-A-AAACACAAT-GCCTTTGTTAG
* *** * * * ** * * * **
9723 GACAAAAGACATTGAAGTTTTTCT-T-TTGCGTGGAAATCTTTTCTTCGC--CCTATTTTCCTTA
123 GATACCCGACATTGATGCTTTGCTGTCTT--AAGAAAAGCTTTTCTTCGCATCGT-TTTT-GATA
* * * ** ** * * *** * * *
9784 AAATTAAAGTTCATCCCTTGAATAAGAC-AAGCATCGTTTCTCCTAAC-AATCTCCT-TT-CTTT
184 GAATCAACGTTTGTCTATTAAATAAGCCGAA-CATTAATACT-CAAACTAATC-CTTATTCCTTT
** * * * * * * * * *
9845 TCAAGATTG-GGAAGCCAAAACACATTGCCTT-T-GTTAGGATACCCGACATTGATGGTTTGGTG
246 T--AGATTGAGG-CCCCATAA-ATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTT
* * * * * ** ** * * *
9907 CCTCAAGAAAAGCTTTTCTTCGCGTC-ATTTTTGATAGAA-TC-AACGTTTGTCTC-TTAAATAA
307 TCGCAATAAAGGCTTTT-TTCCCACCAATCGTTG-TA-AAGTCTAA-GTTCGTC-CGTCAAATGA
* * * ** * * ** * * ** * * *
9968 GCCGAACATTAATACTCA--AACTA-ATCCTCATTCCATTT-AGATTTAGGCACCATAAACATAG
367 GACAAATATGGATTCT-AGTAA--AGATCTTCATTCTTTTTCCGA-TAAACCACTACAAACATAT
* * * * * * * * ** *** * * *
10029 TCTTCTCATTAGGATACACGATATTGATG-CTTTGGTTTGC-AACAAAGGC-TTTCTTCCCACCA
428 TCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCGTGGAAA-TCTTTTCTTCGC-CCT
* * * * * *** ** * * * ** * *
10091 ATCGTT--GTGAAGTCTAAGTTCGGGCCTCAAATGAGACAA-TATGGATTCTAGTAA-TGATCTT
491 AT-TTTCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAG-TCTC
* * * * * * * *** * *
10152 CATTCTTTTTC-CGA-T--AAAGCACTACAAACACATTCTCCTCT-TTAGGACAAAAGTCATTCA
554 CTTTC-TTTTCAAGATTGGGAAGC-C-A-AAACACAAT-GCCTTTGTTAGGATACCCGACATTGA
* * * ** * * * * ** * * * **
10212 AGTTTTTCT-T-TTGCCTGGAAATCTTTTCTTCGC-CCTATTTTTCTTAAAATTAATGTTCATCC
614 TGCTTTGCTGTCTT--AAGAAAAGCTTTTCTTCGCATC-GTTTTTGATAGAATCAACGTTTGT-C
* * * ** * * * * **
10274 T-TTGAATAAGAC-AACCATCGATTCTCCTAA-TAGTCTCCT-TT-CTTTTCAAGATTG-GGAAG
675 TATTAAAGAAGCCGAA-CATTAATACT-CAAACTAATC-CTTATTCCTTTT--AGATTGAGG-CC
* * * * * * * * * * * * *
10333 CTAAAACACATTGCCAT-T-GTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAG
734 CCATAA-ATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGG
* * * ** * * ** * * * * **
10393 CTTTTCTTC-ACGTCGTTTTTAATAGAATCAACA-TTTGTCTCTTAAATATGCCGAA-CATTAAT
1 CTTTTCTTCGCCCT-ATTTTTCTTAAAATTAA-AGTTCATCCCTTGAATAAGAC-AAGCATCGAT
* * * * * * * * *
10455 ACT-CAAACTAATC-CTCATTCTTCTT--AGATTTAGGCA-CCATAA-AC-ATAGTCTTCTCATT
63 TCTCCTAAC-AGTCTC-CTTTCTT-TTCAAGA-TTGGGAAGCCAAAACACAAT-GCCTT-T-GTT
* * * * * ** * * * * * **
10513 AGGATACACGATATTCATGCTTTGGTTTCGCAACAAAGGC-TTTCTTCCCACCAATCGTTG-T-G
121 AGGATACCCGACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATC-GTTTTTGATAG
* * * * * * * * * ** * * *
10575 AAGTCTATGTTCGTGC-CTCAAATGAGACAAATATGGATTCT-AGTAA-TGAT-CTTGATTCTTT
185 AA-TCAACGTTTGT-CTATTAAATAAGCCGAACATTAATACTCA--AACTAATCCTT-ATTC-CT
* * * * * * * * * * ** * * * * * * ** *
10636 TTTCGA-TAAAGCACTACAAACACATTCTCCTTTTTAGGACAAAAGACATTGAAGTTTTTCTTTT
244 TTTAGATTGAGGCCCCATAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTC
* * * * ** * * ** * * ** **
10700 GC-CTGGAAA-TCTTTTCTTCGC-CCTATTTTTCTTAAAATGGAAGTTCATCCCTTGAACAAGAC
309 GCAAT--AAAGGCTTTT-TTCCCACCAATCGTT-GTAAAGTCTAAGTTCGTCCGTCAAATGAGAC
** ** ** * * * ***** *
10762 AAGCATCAATTCTCCTAACAG-TCTCCTTTC-TTTTCAAGATTGGGAAGCTA-AAACACATTGC-
370 AAATATGGATTCTAGTAA-AGATCTTCATTCTTTTTC-CGATAAACCA-CTACAAACATATT-CT
* * *** * * ** * ** * * *
10823 CAT-TGTTAGGATACCCGACATTGATGCTTTGGTGTCT-CAG-AAAAAGCTTTTCTTCACGTCGT
431 CCTCT-TTAGGACAAAAGACATTGAAGTTTTTCT-TTTGC-GTGGAAATCTTTTCTT--CGCCCT
** * * ** * * * * * ** * * *
10885 -TTTT-AATAGAATCAACGTTTGTCTCTTAAATATGCCGAA-CGTTAATACT-CAAACTAATC-C
491 ATTTTCCTTAAAATCAAAGTTCATCCCTTGAATAAGAC-AAGCATCGATTCTCCTAAC-AGTCTC
* * * * * * * * *
10945 TCATTCTTTT-TAGATTTAGGCA-CCATAA-AC-ATAGTCTTCTCATTAGGATACACGATATTGA
554 -CTTTCTTTTCAAGA-TTGGGAAGCCAAAACACAAT-GCCTT-T-GTTAGGATACCCGACATTGA
* * ** * * * * *
11006 TGCTTTGGTTTCGCAACAAAGGC-TTTCTTTCCACCAATCG-TTGTGA-AG--TCTAA-GTTCGT
614 TGCTTTGCTGTCTTAAGAAAAGCTTTTC-TT-C-GC-ATCGTTTTTGATAGAATC-AACGTTTGT
* * * * * ** * * * *
11065 GC-CTCAAATG-AGACAAATATGGATTCT-AGTAA-TGAA--CTTCATT-CTTTTCCTGA-TAAA
674 -CTATTAAA-GAAGCCGAACATTAATACTCA--AACT-AATCCTT-ATTCCTTTT--AGATTGAG
* * * * * * * * * * * * * * * ** **
11122 GCACTACAAACACATTCTCCCCTTTAGGACAAAAGACATTGAAGTTTTTCCTTTTC-CAGGAAA-
731 GCCCCATAAATATAGTCTTCTCATTAGGATACACGATATTGATG-CTTT-GGTTTCGCAATAAAG
*
11185 T
794 G
* * *
11186 CTTTTCTTCGCCATATTTTGCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
*
11251 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCG
11316 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTT
11381 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
11446 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
261 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
11511 CCCACCAATCGTTGTAAAGTCTAAGTTCGTCCGTCAAATGAGACAAATATGGATTCTAGTAAAGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGTCCGTCAAATGAGACAAATATGGATTCTAGTAAAGA
*
11576 TCTTCATTCTTTTTCCGATAAACCACTAAAAACATATTCTCCTCTTTAGGACAAAAGACATTGAA
391 TCTTCATTCTTTTTCCGATAAACCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGAA
*
11641 GTTTTTCTTTTGCGTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTG
456 GTTTTTCTTTTGCGTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTG
11706 AATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACA
521 AATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACA
* *
11771 ATGCCTTTGTTAGGATACCCGACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTTGTATCG
586 ATGCCTTTGTTAGGATACCCGACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCG
11836 TTTTTGATAGAATCAACGTTTGTCTATTAAAGAAGCCGAACATTAATACTCAAACTAATCCTTAT
651 TTTTTGATAGAATCAACGTTTGTCTATTAAAGAAGCCGAACATTAATACTCAAACTAATCCTTAT
11901 TCCTTTTAGATTGAGGCCCCATAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG
716 TCCTTTTAGATTGAGGCCCCATAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG
11966 TTTCGCAATAAAGG
781 TTTCGCAATAAAGG
*
11980 CTTTTCTTTGCCCTATTTTTCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
*
12045 CCTAACAGTCTCATTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCG
* *
12110 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTTGTATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTT
12175 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
12240 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
261 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
*
12305 CCCACCAATCGTTGTAAAGTCTAAGTTCGTCTGTCAAATGAGACAAATATGGATTCTAGTAAAGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGTCCGTCAAATGAGACAAATATGGATTCTAGTAAAGA
12370 TCTTCATTCTTTTTCCGATAAACCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGAA
391 TCTTCATTCTTTTTCCGATAAACCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGAA
*
12435 GTTTTTCTTTTGCGTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTG
456 GTTTTTCTTTTGCGTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTG
*
12500 AATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACG
521 AATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACA
*
12565 TTGCCTTTGTTAGGATACCCGACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCG
586 ATGCCTTTGTTAGGATACCCGACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCG
*
12630 TTTTTGATAGAATCAACGTTTGTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTAT
651 TTTTTGATAGAATCAACGTTTGTCTATTAAAGAAGCCGAACATTAATACTCAAACTAATCCTTAT
12695 TCCTTTTAGATTGAGGCCCCATAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG
716 TCCTTTTAGATTGAGGCCCCATAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG
12760 TTTCGCAATAAAGG
781 TTTCGCAATAAAGG
* * ** * * * * ** * ** *
12774 CTTTT-TTCCCACCAATCGTT-GTAAAGTCT-AAGTTCGTCCGTCAAATGAGACAAATATGGATT
1 CTTTTCTTCGC-CCTATTTTTCTTAAAAT-TAAAGTTCATCCCTTGAATAAGACAAGCATCGATT
** * * * * * * * * *
12836 CTAGTAA-AGATCTTCATTCTTTTTC-CGA-T--AAACCACTACAAACATATTCTCCTCT-TTAG
64 CTCCTAACAG-TCTCCTTTC-TTTTCAAGATTGGGAAGC-C-A-AAACACAAT-GCCTTTGTTAG
* *** * * * ** * * * **
12895 GACAAAAGACATTGAAGTTTTTCT-T-TTGCGTGGAAATCTTTTCTTCGC--CCTATTTTCCTTA
123 GATACCCGACATTGATGCTTTGCTGTCTT--AAGAAAAGCTTTTCTTCGCATCGT-TTTT-GATA
* * * ** ** * * *** * * *
12956 AAATTAAAGTTCATCCCTTGAATAAGAC-AAGCATCGTTTCTCCTAAC-AATCTCCT-TT-CTTT
184 GAATCAACGTTTGTCTATTAAATAAGCCGAA-CATTAATACT-CAAACTAATC-CTTATTCCTTT
** * * * * * * * * *
13017 TCAAGATTG-GGAAGCCAAAACACATTGCCTT-T-GTTAGGATACCCGACATTGATGGTTTGGTG
246 T--AGATTGAGG-CCCCATAA-ATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTT
* * * * * ** ** * * *
13079 CCTCAAGAAAAGCTTTTCTTCGCGTC-ATTTTTGATAGAA-TC-AACGTTTGTCTC-TTAAATAA
307 TCGCAATAAAGGCTTTT-TTCCCACCAATCGTTG-TA-AAGTCTAA-GTTCGTC-CGTCAAATGA
* * * ** * * ** * * ** * * *
13140 GCCGAACATTAATACTCA--AACTA-ATCCTCATTCCATTT-AGATTTAGGCACCATAAACATAG
367 GACAAATATGGATTCT-AGTAA--AGATCTTCATTCTTTTTCCGA-TAAACCACTACAAACATAT
* * * * * * * * ** *** * * *
13201 TCTTCTCATTAGGATACACGATATTGATG-CTTTGGTTTGC-AACAAAGGC-TTTCTTCCCACCA
428 TCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCGTGGAAA-TCTTTTCTTCGC-CCT
* * * * * *** ** * * * ** * *
13263 ATCGTT--GTGAAGTCTAAGTTCGGGCCTCAAATGAGACAA-TATGGATTCTAGTAA-TGATCTT
491 AT-TTTCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAG-TCTC
* * * * * * * *** * *
13324 CATTCTTTTTC-CGA-T--AAAGCACTACAAACACATTCTCCTCT-TTAGGACAAAAGTCATTCA
554 CTTTC-TTTTCAAGATTGGGAAGC-C-A-AAACACAAT-GCCTTTGTTAGGATACCCGACATTGA
* * * ** * * * * ** * * * **
13384 AGTTTTTCT-T-TTGCCTGGAAATCTTTTCTTCGC-CCTATTTTTCTTAAAATTAATGTTCATCC
614 TGCTTTGCTGTCTT--AAGAAAAGCTTTTCTTCGCATC-GTTTTTGATAGAATCAACGTTTGT-C
* * * ** * * * * **
13446 T-TTGAATAAGAC-AACCATCGATTCTCCTAAC-AGTCTCCT-TT-CTTTTCAAGATTG-GGAAG
675 TATTAAAGAAGCCGAA-CATTAATACT-CAAACTAATC-CTTATTCCTTTT--AGATTGAGG-CC
* * * * * * * * * * * * *
13505 CTAAAACACATTGCCAT-T-GTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAG
734 CCATAA-ATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGG
* * * ** * * ** * * * * * **
13565 CTTTTCTTC-ACGTCGTTTTTAATAGAATCAACA-TTTGTCTCTTAAATATGCCGAA-CGTTAAT
1 CTTTTCTTCGCCCT-ATTTTTCTTAAAATTAA-AGTTCATCCCTTGAATAAGAC-AAGCATCGAT
* * * * * * * * * *
13627 ACT-CAAACTAATC-CTCATTCTTTT-TAGATTTAGGCA-CCATAA-AC-ATAGTCTTCTCATTA
63 TCTCCTAAC-AGTCTC-CTTTCTTTTCAAGA-TTGGGAAGCCAAAACACAAT-GCCTT-T-GTTA
* * * * * * * * * * ** **
13686 GGATACACGATATTGATGCTTTGGTTTCGTAACAAAGGATTTT-TTCCCACCAATCGT-AGTA-A
122 GGATACCCGACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGA-TAGA
* * * * * * * ** *
13748 AGTCTAA-GTTCGTGC-CTCAAATGAGACAAATATGGATTCT-AGTAA-TGAA--CTTCATT-CT
186 A-TC-AACGTTTGT-CTATTAAATAAGCCGAACATTAATACTCA--AACT-AATCCTT-ATTCCT
* * * * * * * * * * * * * * * * * * **
13806 TTTCCCGA-TAAAGCACTACAAACACATTCTCCCCTTTAGGACAAAAGACATTGAAGTTTTTCCT
244 TTT--AGATTGAGGCCCCATAAATATAGTCTTCTCATTAGGATACACGATATTGATG-CTTT-GG
*** * * * * ** * * ** *
13870 TTTC-CTGGAAA-TCTTTTCTTCGCCA--TAT-TTTGCTTAAAATGAAAGTTCATCCTTTGAATA
305 TTTCGCAATAAAGGCTTTT-TTC-CCACCAATCGTTG--TAAAGTCTAAGTTCGTCCGTCAAATG
** * ** * * * * * *
13930 AGACAAGCATCGATTCTCCTAACAG-TCTCCTTTC-TTTTCAAGATTGGGAAGC-C-A-AAACAC
366 AGACAAATATGGATTCTAGTAA-AGATCTTCATTCTTTTTC-CGA-T--AAACCACTACAAACAT
* * * *** * * * ** * *
13990 ATT-GCCTTTGTTAGGATACCCGACATTGATGCTTTGCTGTCTT--AAGAAAAGCTTTTCTTCGC
426 ATTCTCCTCT-TTAGGACAAAAGACATTGAAGTTTTTCT-T-TTGCGTGGAAATCTTTTCTTCGC
* ** * * ** ** * * ** * *
14052 ATCGT-TTTT-GATAGAATCAACGTTTGTCTATTAAATAAGCCGAA-CATTAATACT-CAAACTA
488 --CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAATAAGAC-AAGCATCGATTCTCCTAAC-A
* * ** * * * * * * *
14113 ATC-CTTATTCCTTTT--AGATTGAGG-CCCCATAAATATAGT-CTTCTTATTAGGATACACGAT
549 GTCTCCT-TT-CTTTTCAAGATTG-GGAAGCCA-AAACACAATGCCT-TTGTTAGGATACCCGAC
* * ** * * * * * **
14173 ATTGATGCTTTGGTTTCGCAATAAAGGCTTTT-TTCCCACCAATCGTTG-TA-AAGTCTAA-GTT
609 ATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATC-GTTTTTGATAGAA-TC-AACGTT
* * * * * ** * * * * * *
14234 CGTGC-GTTAAATG-AGACAAATATGGATTCT-AGTAA-TGAT-CTTCATTCTTTTTCTG-GTAA
671 TGT-CTATTAAA-GAAGCCGAACATTAATACTCA--AACTAATCCTT-ATTCCTTTT-AGATTGA
* * * * * * * * * * * * * * * ** * *
14293 AGCACTACAAACACATTCTGCTCTTTAGGAAAAAAGACATTGAAGTTTTTCTTTTGC-TTGGAAA
730 GGCCCCATAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAT--AAA
*
14357 -T
793 GG
* * **
14358 CTTTTCTTCGCCCTATTTTCCTTAAAATTAATGTTCATCAATTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
* * * *
14423 CCTAACAGTCTCCTTTCTTTTTAAGATTGGGAAGCTAAAACACATTGCCATTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCG
** * * * * * * *
14488 ACATTGATTATTTGGTGTCTCACGAAAAGCTTTTCTTCGCGTCATTATTAATAGAATCAACGTTT
131 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTT
* * * * * * * * *
14553 GTCTCTAAAATATGCCGAACATTAAAACTCAAACTAATCCTCATTCTTTTTAGATTTACGCACCA
196 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
* * * * * *
14618 TAAACATAGTATTCTCATTAGCATACACGATATTGATGCTTTGG-TTCACAACAAAGGCTTTCTT
261 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
* * *
14682 CCCACCAATCGTTGTGAAGTCTAAGTTCGGGCC-TCAAATGAGAC-AATATGGATTCTAGTAATG
326 CCCACCAATCGTTGTAAAGTCTAAGTTC-GTCCGTCAAATGAGACAAATATGGATTCTAGTAAAG
* *
14745 ATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGA
390 ATCTTCATTCTTTTTCCGATAAACCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGA
* *
14810 AGTTTTTCTTTTGCGTGGAAATCATTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTT
455 AGTTTTTCTTTTGCGTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTT
* * *
14875 GAATAAGACAAACATCGATTCTCCTAATAGTCTCCTTTCTCTTCAAGATTGGGAAGCCAAAACAC
520 GAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACAC
* * * * * *
14940 ATTG-CTATTGTTAGGATACCCGACATTGAGGCTCTGGTGTCTCAAGAAAAGCTTTTCTTCGCGT
585 AATGCCT-TTGTTAGGATACCCGACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCAT
* * * * * * *
15004 CATTTTTAATAGAATCAACGTTTTTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTC
649 CGTTTTTGATAGAATCAACGTTTGTCTATTAAAGAAGCCGAACATTAATACTCAAACTAATCCTT
* * * * *
15069 ATT-CTTATTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGCATACACGATATTGATGCTC
714 ATTCCTT-TTAGATTGAGGCCCCATAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTT
*
15133 TGGTTTCGCAACAAAGG
778 TGGTTTCGCAATAAAGG
* * * ** * * * ** * *
15150 -TTTTTTTCCCACCAATCGTT-GTAAAGTCT-AAGTTTGAT-CCTCAAATGAGACAAACA-CGGA
1 CTTTTCTTCGC-CCTATTTTTCTTAAAAT-TAAAG-TTCATCCCTTGAATAAGACAAGCATC-GA
*** * * * * ** * * * *
15210 TTCTAGGAA-TGAACTTCGTTCTTTTCCCGA-T--AAAGCACTACAAACACATTCTCCTCT-TTA
62 TTCTCCTAACAG-TCTCCTTTCTTTTCAAGATTGGGAAGC-C-A-AAACACAAT-GCCTTTGTTA
* *** * * * * * * **
15270 GGACAAAAGACATTGAAGTTTTTCTTTTGCTT--GGAAATCTTTTCTTCGCA-C-TATTTTCCTT
122 GGATACCCGACATTGATGCTTTGC-TGT-CTTAAGAAAAGCTTTTCTTCGCATCGT-TTTT-GAT
* * * ** ** * * * * * * *
15331 AAAATGAAAGTTCATCCCTTGAATAAGAC-AAGCATCAATTCTCCTAAC-AGTCTCCT-TT-CTT
183 AGAATCAACGTTTGTCTATTAAATAAGCCGAA-CATTAATACT-CAAACTAATC-CTTATTCCTT
** * * * * * * *
15392 TTCAAGATTG-GGAAGCCA-AAACACATTGCTAT-T-GTTAGCATACCCGACATTGATGCTTTGG
245 TT--AGATTGAGG-CCCCATAAATATAGT-CT-TCTCATTAGGATACACGATATTGATGCTTTGG
* * * * * ** * ** * *
15453 TGTCTCAAGAAAAGCTTTTCTTCACGTC-GTTTTTGATAGAA-TC-AACGTTTGTCTC-TTAAAT
305 TTTCGCAATAAAGGCTTTT-TTCCCACCAATCGTTG-TA-AAGTCTAA-GTTCGTC-CGTCAAAT
* * ** * * ** * ** ***
15514 AAG-CTGAACT-TTAATACTCA--AACTA-ATCCTCATTCTTTTT-AAATTTAGGCACCGTAAAC
365 GAGAC--AAATATGGATTCT-AGTAA--AGATCTTCATTCTTTTTCCGA-TAAACCACTACAAAC
* * * * * * * *** * *
15573 ATATTCTTCTCATTAGGATACACGATATTG-A--TTCTCTGGTTT-CGCAACAAAGGCGTTT-TT
424 ATATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCT--TTTGCG-TGGAAA-TCTTTTCTT
* * * * * * ** * ** * * **
15633 CCCACCAATCATT--GTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACA-CGGATTCTAGTAA
485 CGC-CCTAT-TTTCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCATC-GATTCTCCTAA
* * * * ** *** * * * * ***
15695 TTA-ACTTCATTCTTTTCCTGATAAAGTA-CTATAAACAC-ATTCTCTTCT-TTAGGACAAAAGA
547 -CAGTCTCCTTTCTTTTCAAGATTGGGAAGCCA-AAACACAATGC-CTT-TGTTAGGATACCCGA
* * * * ** * * * * * *
15756 CATTGAAGTTTTTCT-TTTTCCTGGAAATCTTTTCTTCGCCAT--ATTTTGCTTAAAATGAACGT
608 CATTGATGCTTTGCTGTCTT-AAGAAAAGCTTTTCTTCG-CATCGTTTTTG-ATAGAATCAACGT
** ** * * * * * * * *
15818 TCATCCCTTGAATAAGAC-AAGCATCGATTA-TCCTAAC-AGTCTCCT-TT-CTTTTCAAGATTG
670 TTGTCTATTAAAGAAGCCGAA-CAT-TAATACT-CAAACTAATC-CTTATTCCTTTT--AGATTG
** * * * * * * * * *
15878 -GGAAGCCA-AAACATATTGCTAT-T-GTTAGGATACCCGACATTGATGCTTTGGTGTCACGAGA
729 AGG-CCCCATAAATATAGT-CT-TCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATA
*
15939 AAAG
791 AAGG
* * ** * * * * * * * * ** *
15943 CTTTTCTTC-ACGTCATTTTTAATAGAATCAACGTTCGTCTCTTAAATATGCCGAA-CATTAATA
1 CTTTTCTTCGCCCT-ATTTTTCTTAAAATTAAAGTTCATCCCTTGAATAAGAC-AAGCATCGATT
* * * * * * * * *
16006 CT-CAAACTAATC-CTCATTCTTTT-TAGATTTAGGCA-CCATAA-AC-ATAGTCTTCTCATTAG
64 CTCCTAAC-AGTCTC-CTTTCTTTTCAAGA-TTGGGAAGCCAAAACACAAT-GCCTT-T-GTTAG
* * * * * ** * * * * * * **
16065 GATACACGATATTGATGCTCTGGTTTCGCAA-CAAAGGTTTTTTTCCCACCAATCGTTG-TA-AA
123 GATACCCGACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATC-GTTTTTGATAGAA
* * * * * * *** * *
16127 GTCTAA-GTTCGATC-CTCAAATGAGACAAACACGGATTCT-AGGAA-TGAA--CTTCGTT-CTT
187 -TC-AACGTTTG-TCTATTAAATAAGCCGAACATTAATACTCA--AACT-AATCCTT-ATTCCTT
* * * * * * * * * * * * * * * * * **
16185 TTCCCGA-TAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTT
245 TT--AGATTGAGGCCCCATAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTT
* ** * * * * * * * ** * * ** *
16249 TGCTAGGAAA-TCTTTTCTTCGC-TCTAT-TTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGA
308 CGC-AATAAAGGCTTTT-TTCCCACCAATCGTT--GTAAAGTCTAAGTTCGTCCGTCAAATGAGA
** ** ** * * * ***** * *
16311 CAAGCATCAATTCTCCTAACAG-TCTCCTTTC-TTTTCAAGATTGGGAAGT-CAAAACACATTGC
369 CAAATATGGATTCTAGTAA-AGATCTTCATTCTTTTTC-CGATAAACCACTAC-AAACATATT-C
* * ** * * ** * ** * * * *
16373 T-AT-TGTTAGGATAACCGACATTGATGCTTTGGTGTCT-CAAGAAAAGCTTTTCTTCACGTCGT
430 TCCTCT-TTAGGACAAAAGACATTGAAGTTTTTCT-TTTGCGTGGAAATCTTTTCTT--CGCCCT
** * * * ** * * * * ** * * *
16435 -TTTT-GATAGAATCAACGCTGGTCTCTTAAATAAG-CTAAACTTTAATACT-CAAACTAATC-C
491 ATTTTCCTTAAAATCAAAGTTCATCCCTTGAATAAGAC-AAGCATCGATTCTCCTAAC-AGTCTC
* * * * * * * * *
16495 TCATTCTTTT-TAGATTTAGGCAG-CATAA-AC-ATAGTCTTCTCATTAGGATACACGATATTGA
554 -CTTTCTTTTCAAGA-TTGGGAAGCCAAAACACAAT-GCCTT-T-GTTAGGATACCCGACATTGA
* ** * * * * * ** *
16556 TGCTTTGGT-TCGCAACAAAGGC-TTTCTTCCCACCAATCGTTG-T-GAAGTCTAA-GTTTGGGC
614 TGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATC-GTTTTTGATAGAA-TC-AACGTTT-GTC
* * * * ** * * * * * * *
16616 -CTCAAATG-AGAC-AATATGGATTCT-AGTAA-TGAT-CTTCATTCTTTTTCCGA-TAAAGCAC
675 TATTAAA-GAAGCCGAACATTAATACTCA--AACTAATCCTT-ATTCCTTTT-AGATTGAGGCCC
* * * * * * * * * * * * * ** * * *
16674 TACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGC-CTGGAAA-T
735 CATAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAT--AAAGG
* * *
16734 CTTTTCTTCGCCCTATTTTTCTTAAAATGAAAGTTCATCCCATGAATAAGACAAGCATCGTTTCT
1 CTTTTCTTCGCCCTATTTTTCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
* *
16799 CCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCG
*
16864 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGTATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTT
16929 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
*
16994 TAAATATAGTCTTCTCATTAGGATACACGATACTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
261 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
* * *
17059 CCCACCAATCATTGTAAAGTCTAAGTTCGTGCGTCAAATGAGACAAATATGGATTCTAGTAATGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGTCCGTCAAATGAGACAAATATGGATTCTAGTAAAGA
*
17124 TCTTCATTCTTTTTCAGATAAACCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGAA
391 TCTTCATTCTTTTTCCGATAAACCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGAA
*
17189 GTTTTTCTTTTGCGTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTG
456 GTTTTTCTTTTGCGTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTG
17254 AATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACA
521 AATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACA
* *
17319 ATGCCTTTGTTAGGATACCCGACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTTGTATCG
586 ATGCCTTTGTTAGGATACCCGACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCG
*
17384 TTTTTGATAGAATAAACGTTTGTCTATTAAAGAAGCCGAACATTAATACTCAAACTAATCCTTAT
651 TTTTTGATAGAATCAACGTTTGTCTATTAAAGAAGCCGAACATTAATACTCAAACTAATCCTTAT
17449 TCCTTTTAGATTGAGGCCCCATAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG
716 TCCTTTTAGATTGAGGCCCCATAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG
*
17514 TTTCGCAGTAAAGG
781 TTTCGCAATAAAGG
* * * *
17528 CTTTTCTTTGCCCTATTTTTCATAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCT
1 CTTTTCTTCGCCCTATTTTTCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
* *
17593 CCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCG
* * * * *
17658 ACATTGATGCTTTGGTGCCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTT
* * * * *
17723 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCATTTAGATTTAGGCACCA
196 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
* * * *
17788 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGGTT-GCAACAAAGGCTTTCTT
261 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
* * *
17852 CCCACCAATCGTTGTGAAGTCTAAGTTCGGGCC-TCAAATGAGAC-AATATGGATTCTAGTAATG
326 CCCACCAATCGTTGTAAAGTCTAAGTTC-GTCCGTCAAATGAGACAAATATGGATTCTAGTAAAG
* *
17915 ATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGA
390 ATCTTCATTCTTTTTCCGATAAACCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGA
* * * *
17980 AGTTTTTCTTTTGCCTGGAAATCTTTTCTTCGCCCTATTTTTCTTAGAATGAAAGTTCATCCCTT
455 AGTTTTTCTTTTGCGTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTT
*
18045 GAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCTAAAACAC
520 GAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACAC
* * * * *
18110 ATTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTC
585 AATGCCTTTGTTAGGATACCCGACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATC
* * * * * *
18175 ATTTTTAATAGAATCAACGTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCA
650 GTTTTTGATAGAATCAACGTTTGTCTATTAAAGAAGCCGAACATTAATACTCAAACTAATCCTTA
* * * * * *
18240 TTCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGCATACACGATATTGATGCTCTG
715 TTCCTTTTAGATTGAGGCCCCATAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTG
* *
18305 GTTTCGTAACAAAGG
780 GTTTCGCAATAAAGG
*
18320 TTTTT
1 CTTTT
18325 TTCCCACCAA
Statistics
Matches: 7017, Mismatches: 1916, Indels: 1170
0.69 0.19 0.12
Matches are distributed among these distances:
788 16 0.00
789 38 0.01
790 121 0.02
791 1256 0.18
792 1174 0.17
793 1491 0.21
794 2799 0.40
795 103 0.01
796 16 0.00
797 2 0.00
798 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.35
Consensus pattern (794 bp):
CTTTTCTTCGCCCTATTTTTCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCG
ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTT
GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
CCCACCAATCGTTGTAAAGTCTAAGTTCGTCCGTCAAATGAGACAAATATGGATTCTAGTAAAGA
TCTTCATTCTTTTTCCGATAAACCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGAA
GTTTTTCTTTTGCGTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTG
AATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACA
ATGCCTTTGTTAGGATACCCGACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCG
TTTTTGATAGAATCAACGTTTGTCTATTAAAGAAGCCGAACATTAATACTCAAACTAATCCTTAT
TCCTTTTAGATTGAGGCCCCATAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG
TTTCGCAATAAAGG
Found at i:9700 original size:476 final size:475
Alignment explanation
Indices: 8808--11984 Score: 5324
Period size: 476 Copynumber: 6.7 Consensus size: 475
8798 GCAATAAAGG
* *
8808 CTTTTCTTTGCCCTATTTTTCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
*
8873 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* *
8938 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTTGTATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTT
9003 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
9068 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
261 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
9133 CCCACCAATCGTTGTAAAGTCTAAGTTCGTCCGTCAAATGAGACAAATATGGATTCTAGTAAAGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGTCC-TCAAATGAGACAAATATGGATTCTAGTAAAGA
*
9198 TCTTCATTCTTTTTCCGATAAACCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGAA
390 TCTTCATTCTTTTTCCGATAAACCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
*
9263 GTTTTTCTTTTGCGTGGAAAT
455 GTTTTTCTTTTGCCTGGAAAT
*
9284 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
9349 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
9414 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTT
9479 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
9544 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
261 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
9609 CCCACCAATCGTTGTAAAGTCTAAGTTCGTCCGTCAAATGAGACAAATATGGATTCTAGTAAAGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGTCC-TCAAATGAGACAAATATGGATTCTAGTAAAGA
*
9674 TCTTCATTCTTTTTCCGATAAACCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGAA
390 TCTTCATTCTTTTTCCGATAAACCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
*
9739 GTTTTTCTTTTGCGTGGAAAT
455 GTTTTTCTTTTGCCTGGAAAT
*
9760 CTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
*
9825 CCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* * * * * *
9890 ACATTGATGGTTTGGTGCCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTT
* * * * *
9955 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCATTTAGATTTAGGCACCA
196 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
* * *
10020 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTT-GCAACAAAGGCTTTCTT
261 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
* * *
10084 CCCACCAATCGTTGTGAAGTCTAAGTTCGGGCCTCAAATGAGAC-AATATGGATTCTAGTAATGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTC-GTCCTCAAATGAGACAAATATGGATTCTAGTAAAGA
* * *
10148 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGTCATTCAA
390 TCTTCATTCTTTTTCCGATAAACCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
10213 GTTTTTCTTTTGCCTGGAAAT
455 GTTTTTCTTTTGCCTGGAAAT
* * * *
10234 CTTTTCTTCGCCCTATTTTTCTTAAAATTAATGTTCATCCTTTGAATAAGACAACCATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
* * *
10299 CCTAATAGTCTCCTTTCTTTTCAAGATTGGGAAGCTAAAACACATTGCCATTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* * * * * *
10364 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTAATAGAATCAACATTT
131 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTT
* * * * *
10429 GTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATT-CTTCTTAGATTTAGGCACC
196 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTT-TTAGATTGAGGCCCC
* * * *
10493 ATAAACATAGTCTTCTCATTAGGATACACGATATTCATGCTTTGGTTTCGCAACAAAGGCTTTCT
260 ATAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTT
* * *
10558 TCCCACCAATCGTTGTGAAGTCTATGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATG
325 TCCCACCAATCGTTGTAAAGTCTAAGTTCGT-CCTCAAATGAGACAAATATGGATTCTAGTAAAG
* * * *
10623 ATCTTGATTCTTTTTTCGATAAAGCACTACAAACACATTCTCCTTTTTAGGACAAAAGACATTGA
389 ATCTTCATTCTTTTTCCGATAAACCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGA
10688 AGTTTTTCTTTTGCCTGGAAAT
454 AGTTTTTCTTTTGCCTGGAAAT
* ** * *
10710 CTTTTCTTCGCCCTATTTTTCTTAAAATGGAAGTTCATCCCTTGAACAAGACAAGCATCAATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
* *
10775 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCTAAAACACATTGCCATTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* * * * *
10840 ACATTGATGCTTTGGTGTC-TCAGAAAAAGCTTTTCTTCACGTCGTTTTTAATAGAATCAACGTT
131 ACATTGATGCTTTGCTGTCTTAAG-AAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTT
* * * * * * *
10904 TGTCTCTTAAATATGCCGAACGTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACC
195 TGTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCC
* *
10969 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCT
260 ATAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTT-T
* *
11034 TT-CCACCAATCGTTGTGAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAAT
324 TTCCCACCAATCGTTGTAAAGTCTAAGTTCGT-CCTCAAATGAGACAAATATGGATTCTAGTAAA
* * *
11098 GAACTTCATTC-TTTTCCTGATAAAGCACTACAAACACATTCTCCCCTTTAGGACAAAAGACATT
388 GATCTTCATTCTTTTTCC-GATAAACCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATT
*
11162 GAAGTTTTTCCTTTT-CCAGGAAAT
452 GAAGTTTTT-CTTTTGCCTGGAAAT
* * *
11186 CTTTTCTTCGCCATATTTTGCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
11251 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
11316 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTT
11381 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
11446 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
261 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
11511 CCCACCAATCGTTGTAAAGTCTAAGTTCGTCCGTCAAATGAGACAAATATGGATTCTAGTAAAGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGTCC-TCAAATGAGACAAATATGGATTCTAGTAAAGA
* *
11576 TCTTCATTCTTTTTCCGATAAACCACTAAAAACATATTCTCCTCTTTAGGACAAAAGACATTGAA
390 TCTTCATTCTTTTTCCGATAAACCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
*
11641 GTTTTTCTTTTGCGTGGAAAT
455 GTTTTTCTTTTGCCTGGAAAT
11662 CTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
*
11727 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* *
11792 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTTGTATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTT
*
11857 GTCTATTAAAGAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
11922 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTT
261 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTT
11985 CTTTGCCCTA
Statistics
Matches: 2571, Mismatches: 115, Indels: 30
0.95 0.04 0.01
Matches are distributed among these distances:
473 2 0.00
474 387 0.15
475 127 0.05
476 2037 0.79
477 18 0.01
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (475 bp):
CTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTT
GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
CCCACCAATCGTTGTAAAGTCTAAGTTCGTCCTCAAATGAGACAAATATGGATTCTAGTAAAGAT
CTTCATTCTTTTTCCGATAAACCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAG
TTTTTCTTTTGCCTGGAAAT
Found at i:12872 original size:476 final size:475
Alignment explanation
Indices: 11980--26152 Score: 14512
Period size: 476 Copynumber: 29.7 Consensus size: 475
11970 GCAATAAAGG
* * *
11980 CTTTTCTTTGCCCTATTTTTCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
* *
12045 CCTAACAGTCTCATTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* * * **
12110 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTTGTATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTT
* * * *
12175 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACCA
* *
12240 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
* *
12305 CCCACCAATCGTTGTAAAGTCTAAGTTCGTCTGTCAAATGAGACAAATATGGATTCTAGTAAAGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGTC-CTCAAATGAGACAAATATGGATTCTAGTAATGA
* *
12370 TCTTCATTCTTTTTCCGATAAACCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGAA
390 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
*
12435 GTTTTTCTTTTGCGTGGAAAT
455 GTTTTTCTTTTGCCTGGAAAT
12456 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
*
12521 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACGTTGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* * *
12586 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTT
* * * *
12651 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACCA
* *
12716 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
*
12781 CCCACCAATCGTTGTAAAGTCTAAGTTCGTCCGTCAAATGAGACAAATATGGATTCTAGTAAAGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGTCC-TCAAATGAGACAAATATGGATTCTAGTAATGA
* *
12846 TCTTCATTCTTTTTCCGATAAACCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGAA
390 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
*
12911 GTTTTTCTTTTGCGTGGAAAT
455 GTTTTTCTTTTGCCTGGAAAT
* *
12932 CTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
*
12997 CCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* * *
13062 ACATTGATGGTTTGGTGCCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTT
*
13127 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCATTTAGATTTAGGCACCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACCA
*
13192 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTT-GCAACAAAGGCTTTCTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
* *
13256 CCCACCAATCGTTGTGAAGTCTAAGTTCGGGCCTCAAATGAGAC-AATATGGATTCTAGTAATGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTC-GTCCTCAAATGAGACAAATATGGATTCTAGTAATGA
* *
13320 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGTCATTCAA
390 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
13385 GTTTTTCTTTTGCCTGGAAAT
455 GTTTTTCTTTTGCCTGGAAAT
* * * * *
13406 CTTTTCTTCGCCCTATTTTTCTTAAAATTAATGTTCATCCTTTGAATAAGACAACCATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
* *
13471 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCTAAAACACATTGCCATTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* * *
13536 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTAATAGAATCAACATTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTT
* * *
13601 GTCTCTTAAATATGCCGAACGTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACCA
* *
13666 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGTAACAAAGGATTTTTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
*
13731 CCCACCAATCGTAGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGT-CCTCAAATGAGACAAATATGGATTCTAGTAATGA
* * *
13796 ACTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCCCTTTAGGACAAAAGACATTGAA
390 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
13861 GTTTTTCCTTTT-CCTGGAAAT
455 GTTTTT-CTTTTGCCTGGAAAT
* * *
13882 CTTTTCTTCGCCATATTTTGCTTAAAATGAAAGTTCATCCTTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
13947 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* * *
14012 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTT
* * * *
14077 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACCA
* * *
14142 TAAATATAGTCTTCTTATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
* *
14207 CCCACCAATCGTTGTAAAGTCTAAGTTCGTGCGTTAAATGAGACAAATATGGATTCTAGTAATGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGT-CCTCAAATGAGACAAATATGGATTCTAGTAATGA
* * * *
14272 TCTTCATTCTTTTTCTGGTAAAGCACTACAAACACATTCTGCTCTTTAGGAAAAAAGACATTGAA
390 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
*
14337 GTTTTTCTTTTGCTTGGAAAT
455 GTTTTTCTTTTGCCTGGAAAT
* * **
14358 CTTTTCTTCGCCCTATTTTCCTTAAAATTAATGTTCATCAATTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
* * *
14423 CCTAACAGTCTCCTTTCTTTTTAAGATTGGGAAGCTAAAACACATTGCCATTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
** * * * *
14488 ACATTGATTATTTGGTGTCTCACGAAAAGCTTTTCTTCGCGTCATTATTAATAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTT
* * * * *
14553 GTCTCTAAAATATGCCGAACATTAAAACTCAAACTAATCCTCATTCTTTTTAGATTTACGCACCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACCA
* * * *
14618 TAAACATAGTATTCTCATTAGCATACACGATATTGATGCTTTGG-TTCACAACAAAGGCTTTCTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
* *
14682 CCCACCAATCGTTGTGAAGTCTAAGTTCGGGCCTCAAATGAGAC-AATATGGATTCTAGTAATGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTC-GTCCTCAAATGAGACAAATATGGATTCTAGTAATGA
14746 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
390 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
*
14811 GTTTTTCTTTTGCGTGGAAAT
455 GTTTTTCTTTTGCCTGGAAAT
* * *
14832 CATTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAACATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
* *
14897 CCTAATAGTCTCCTTTCTCTTCAAGATTGGGAAGCCAAAACACATTG-CTATTGTTAGGATACCC
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCT-TTGTTAGGATACCC
* * * *
14961 GACATTGAGGCTCTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTAATAGAATCAACGTT
130 GACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTT
* *
15026 TTTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATT-CTTATTAGATTTAGGCAC
195 TGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTT-TTAGATTTAGGCAC
* * *
15090 CATAAACATAGTCTTCTCATTAGCATACACGATATTGATGCTCTGGTTTCGCAACAAAGGTTTTT
259 CATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTT
* * * *
15155 TTCCCACCAATCGTTGTAAAGTCTAAGTTTGATCCTCAAATGAGACAAACACGGATTCTAGGAAT
324 TTCCCACCAATCGTTGTAAAGTCTAAGTTCG-TCCTCAAATGAGACAAATATGGATTCTAGTAAT
* * *
15220 GAACTTCGTTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTG
388 GATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTG
*
15285 AAGTTTTTCTTTTGCTTGGAAAT
453 AAGTTTTTCTTTTGCCTGGAAAT
* *
15308 CTTTTCTTCGCACTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCAATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
*
15373 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTG-CTATTGTTAGCATACCC
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCT-TTGTTAGGATACCC
*
15437 GACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTGATAGAATCAACGTT
130 GACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTT
* * * *
15502 TGTCTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTTTTAAATTTAGGCACC
195 TGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACC
* * * * *
15567 GTAAACATATTCTTCTCATTAGGATACACGATATTGATTCTCTGGTTTCGCAACAAAGGCGTTTT
260 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTT
* * * * *
15632 TCCCACCAATCATTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACACGGATTCTAGTAATT
325 TCCCACCAATCGTTGTAAAGTCTAAGTTCGT-CCTCAAATGAGACAAATATGGATTCTAGTAATG
* * * *
15697 AACTTCATTC-TTTTCCTGATAAAGTACTATAAACACATTCTCTTCTTTAGGACAAAAGACATTG
389 ATCTTCATTCTTTTTCC-GATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTG
*
15761 AAGTTTTTCTTTTTCCTGGAAAT
453 AAGTTTTTCTTTTGCCTGGAAAT
* * * *
15784 CTTTTCTTCGCCATATTTTGCTTAAAATGAACGTTCATCCCTTGAATAAGACAAGCATCGATTAT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
*
15849 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACATATTG-CTATTGTTAGGATACCC
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCT-TTGTTAGGATACCC
* * * * *
15913 GACATTGATGCTTTGGTGTCACGAGAAAAGCTTTTCTTCACGTCATTTTTAATAGAATCAACGTT
130 GACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTT
* * *
15978 CGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACC
195 TGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACC
* *
16043 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTCTGGTTTCGCAACAAAGGTTTTTT
260 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTT
* * *
16108 TCCCACCAATCGTTGTAAAGTCTAAGTTCGATCCTCAAATGAGACAAACACGGATTCTAGGAATG
325 TCCCACCAATCGTTGTAAAGTCTAAGTTCG-TCCTCAAATGAGACAAATATGGATTCTAGTAATG
* * *
16173 AACTTCGTTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGA
389 ATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGA
16238 AGTTTTTCTTTTG-CTAGGAAAT
454 AGTTTTTCTTTTGCCT-GGAAAT
* *
16260 CTTTTCTTCGCTCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCAATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
* *
16325 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGTCAAAACACATTG-CTATTGTTAGGATAACC
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCT-TTGTTAGGATACCC
* *
16389 GACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTGATAGAATCAACGCT
130 GACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTT
* ** * * *
16454 GGTCTCTTAAATAAGCTAAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCAGC
195 TGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACC
*
16519 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG-TTCGCAACAAAGGCTTTCT
260 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTT
* * *
16583 TCCCACCAATCGTTGTGAAGTCTAAGTTTGGGCCTCAAATGAGAC-AATATGGATTCTAGTAATG
325 TCCCACCAATCGTTGTAAAGTCTAAG-TTCGTCCTCAAATGAGACAAATATGGATTCTAGTAATG
16647 ATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGA
389 ATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGA
16712 AGTTTTTCTTTTGCCTGGAAAT
454 AGTTTTTCTTTTGCCTGGAAAT
* * *
16734 CTTTTCTTCGCCCTATTTTTCTTAAAATGAAAGTTCATCCCATGAATAAGACAAGCATCGTTTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
*
16799 CCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* * **
16864 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGTATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTT
* * * *
16929 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACCA
* * *
16994 TAAATATAGTCTTCTCATTAGGATACACGATACTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
* *
17059 CCCACCAATCATTGTAAAGTCTAAGTTCGTGCGTCAAATGAGACAAATATGGATTCTAGTAATGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGT-CCTCAAATGAGACAAATATGGATTCTAGTAATGA
* * *
17124 TCTTCATTCTTTTTCAGATAAACCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGAA
390 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
*
17189 GTTTTTCTTTTGCGTGGAAAT
455 GTTTTTCTTTTGCCTGGAAAT
*
17210 CTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
*
17275 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* * * ** *
17340 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTTGTATCGTTTTTGATAGAATAAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTT
* * * * *
17405 GTCTATTAAAGAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACCA
* **
17470 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAGTAAAGGCTTTTCT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTT-T
** * ** * * ** * ** * ** * * ** *
17535 TTGC-CCTATTTTTCATAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAAC
325 TCCCACCAATCGTT-GTAAAGTCTAAGTTCGT-CCTCAAATGAGACAAATATGGATTCTAGTAAT
* * * * * * * * ***
17599 AATCTCCTTTC-TTTTCAAGATTGGGAAGC-C-A-AAACACATT-GCCTTTGTTAGGATACCCGA
388 GATCTTCATTCTTTTTC-CGA-T--AAAGCACTACAAACACATTCTCCTCT-TTAGGACAAAAGA
** ** * *
17659 CATTG-A-TGCTT-TGGTGCCTCAAGAAAAG
448 CATTGAAGTTTTTCTTTTGCCT---GGAAAT
* *** * * * ** * * * ** *
17687 CTTTTCTTCG-CGTCATTTTTGATAGAATCAACGTTTGTCTCTTAAATAAGCCGAA-CATTAATA
1 CTTTTCTTCGCCCT-ATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGAC-AAGCATCGATT
* * * * * * * * * * *
17750 CT-CAAACTAATCCTCATTCCATTT--AGATTTAGGCA-CCATAA-ACATAGTCTTCTCATTAGG
64 CTCCTAAC-AGT-CTCCTTTCTTTTCAAGA-TTGGGAAGCCAAAACACATTGCCTT-T-GTTAGG
* * * * * ** * **
17810 ATACACGATATTGATGCTTTGG-GT-TGCAACAAAGGC-TTTCTTCCCACCAATCGTTG-T-GAA
124 ATACCCGACATTGATGCTTTGGTGTCT-CAAGAAAAGCTTTTCTTCGCGTC-GTTTTTGATAGAA
* * * * * * ** * * * *
17870 GTCTAA-GTTCGGGC-CTCAAATGAGAC-AATATGGATTCT-AGTAA-TGATCTTCATTCTTTTT
187 -TC-AACGTT-TGTCTCTTAAATAAGCCGAACATTAATACTCA--AACTAATCCTCATTCCTTTT
* * * * * * * * * * * * * * * ** *
17930 CCGA-TAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGC
247 -AGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCG-
*** * * * ** * ** * ** *
17994 CTGGAAA-TCTTTTCTTCGC-CCTATTTTTCTTAGAA-TGAAAGTTCATCCCTTGAATAAGACAA
310 CAACAAAGGCTTTT-TTCCCACCAATCGTT-GTA-AAGTCTAAGTTCGT-CCTCAAATGAGACAA
** * ** * * * * *** * *
18056 GCATCGATTCTCCTAA-CAGTCTCCTTTC-TTTTCAAGATTGGGAAGCTA-AAACACATTGC-CA
371 ATATGGATTCTAGTAATGA-TCTTCATTCTTTTTC-CGATAAAGCA-CTACAAACACATT-CTCC
* *** * * ** * ** * *
18117 T-TGTTAGGATACCCGACATTGATGCTTTGGTGTCT-CAAGAAAAG
432 TCT-TTAGGACAAAAGACATTGAAGTTTTTCT-TTTGCCTGGAAAT
* *** * * * ** * * * * ** *
18161 CTTTTCTTCG-CGTCATTTTTAATAGAATCAACGTTTGTCTCTTAAATATGCCGAA-CATTAATA
1 CTTTTCTTCGCCCT-ATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGAC-AAGCATCGATT
* * * * * * * * * * *
18224 CT-CAAACTAATC-CTCATTCTTTT-TAGATTTAGGCA-CCATAA-ACATAGTCTTCTCATTAGC
64 CTCCTAAC-AGTCTC-CTTTCTTTTCAAGA-TTGGGAAGCCAAAACACATTGCCTT-T-GTTAGG
* * * * * * * * ** * **
18284 ATACACGATATTGATGCTCTGGTTTCGT-AA-CAAAGGTTTTTTTCCCACCAATCGTTG-TA-AA
124 ATACCCGACATTGATGCTTTGGTGTC-TCAAGAAAAGCTTTTCTTCGCGTC-GTTTTTGATAGAA
* * * * * ** * * * * *
18345 GTCTAA-GTTCGTGCGTC--AAATGAGACAAATATGGATTCT-AGTAA-TGATCTTCATACTTTT
187 -TC-AACGTTTGT-C-TCTTAAATAAGCCGAACATTAATACTCA--AACTAATCCTCATTCCTTT
* * * * * * * * * * * * * * * ** *
18405 TCTG-GTAAAGCACTACAAACACATTCTCCTCTTTAGGAAAAAAGATATTGAAGTTTTTCTTTTG
246 T-AGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCG
*** ** * * ** * ** * ** *
18469 CTTGAAAATCTTTTCTTCGC-CCTATTTTTCTTAGAA-TGAAAGTTCATCCCTTGAATAAGACAA
310 CAACAAAGGCTTTT-TTCCCACCAATCGTT-GTA-AAGTCTAAGTTCGT-CCTCAAATGAGACAA
* ** * * * * *** * * *
18532 GA-ATCGATTCTCCTAA-CAGTCTCCTTTC-TTTTCAAGATTGGGAAGCTA-AAACACATTGTCA
371 -ATATGGATTCTAGTAATGA-TCTTCATTCTTTTTC-CGATAAAGCA-CTACAAACACATTCTCC
* *** * * ** * ** * *
18593 T-TGTTAGGATACCCGACATTGATGCTTTGGTGTCT-CAAGAAAAG
432 TCT-TTAGGACAAAAGACATTGAAGTTTTTCT-TTTGCCTGGAAAT
* ** * * ** ** * * * ** *
18637 CTTTTCTTCGCGTCGT-TTTT-GATAAAATCAACGTTTGTTTCTTAAATAAGCCAAACATTAATA
1 CTTTTCTTCGC--CCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATT
* * * ** * * * * **
18700 CT-CAAACTAATC-CTTATTCCTTTT--AGATTGAGG-CCCCATAA-ATATAGTCTTCCCATTAG
64 CTCCTAAC-AGTCTCCT-TT-CTTTTCAAGATTG-GGAAGCCAAAACACATTGCCTT--TGTTAG
* * * * * * ** ** **
18759 GATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTT-TTCCCACCAATCGT-AGTA-AA
123 GATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGA-TAGAA
* * * * * ** * * * * *
18821 GTCTAA-GTTCGTGCGTC--AAATGAGACAAATATGGATTCT-AGTAA-TGATCTTCATACTTTT
187 -TC-AACGTTTGT-C-TCTTAAATAAGCCGAACATTAATACTCA--AACTAATCCTCATTCCTTT
* * * * * * * * * * * * * * * ** *
18881 TCTG-GTAAAGCACTACAAACACATTCTCCTCTTTAGGAAAAAAGACATTTA-G-TTTTCTTTTG
246 T-AGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCG
*** * * * * * * * ** *
18943 CGTGGAAA-TCTTTTCTTCGC-CCTAT-TTTCCTTAAAAT-TAAAGTTCATCCCTTGAATAAGAC
310 C-AACAAAGGCTTTT-TTCCCACCAATCGTT--GTAAAGTCT-AAGTTCGT-CCTCAAATGAGAC
** ** ** * * * * * *
19004 AAGCATCAATTCTCCTAA-CAGTCTCCTTTC-TTTTCAAGATTGGAAG--C--CAAACACATT-G
369 AAATATGGATTCTAGTAATGA-TCTTCATTCTTTTTC-CGA-T-AAAGCACTACAAACACATTCT
* * *** * * * ** * *
19062 CCTTTGTTAGGATACCCGACATTGATGCTTTGCTGTCTT--AAGAAAAG
430 CCTCT-TTAGGACAAAAGACATTGAAGTTTTTCT-T-TTGCCTGGAAAT
* ** * * * ** ** * * **
19109 CTTTTCTTCGCATCGT-TTTT-GATAGAATCAACGTTTGTCTATTAAATAAGCCGAA-CATTAAT
1 CTTTTCTTCGC--CCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGAC-AAGCATCGAT
* * * * * * * * * *
19171 ACT-CAAACTAATC-CTTATTCCTTT--AGA-TGAGG--GCCCATAA-ATATAGTCTTCTCTTAG
63 TCTCCTAAC-AGTCTCCT-TTCTTTTCAAGATTG-GGAAG-CCAAAACACATTGCCTT-TGTTAG
* * * * * * * ** **
19228 GATACAC-ATATTGAT-CTTTTGGTTTCGC-ATAAAGGC-TTTCTTTC-C-CCCATCGTG-TA-A
123 GATACCCGACATTGATGC-TTTGGTGTCTCAAGAAAAGCTTTTC-TTCGCGTCGTTTTTGATAGA
* * * * * * * * *
19285 AGTCTAA-G--TG--GC-TAAAT-AG-C-AATATGATTA-T-AAGCTAAGCATACA-ACACATCT
186 A-TC-AACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCT-CATTC-C-TTT
* * * *
19338 T--CTTT-GG-A--A-AAGACATGAGTTTTTCTTTCGAAATCTTTCTTGG-TTCATCCTGA-ATA
246 TAGATTTAGGCACCATAA-ACAT-AG----TC-TTC----TC-AT-TAGGATACA--C-GATAT-
* * * * * * ** **** ** ***
19394 AGACAGCATCGATTCTC-CTAAC-AA-TCTCCTTTCTTTTCAA--GATTGGGAAG-CTAAACACA
294 TGA-TGCTTTGGTT-TCGC-AACAAAGGCTTTTTTCCCACCAATCG-TTGTAAAGTCTAAGTTC-
* *** * * ** * * * ** ** *
19453 TTGCCATTGTTAGGATACCCGACATTGATGCT--TGGTG--C-TCAAAGCTTTTCTTCGCG-TCT
354 GT-CC--TCAAATGAGA-CAAATATGGATTCTAGTAATGATCTTC-ATTC-TTT-TTC-CGAT-A
**** * * * * * * * ** * * **** **
19512 TTTTA-TAGAATCAACGTT-T-GTCTCTA-AATAAGCCGAACATTAAACTCAAACTAAT-CCT--
410 AAGCACTACAAAC-ACATTCTCCTCTTTAGGACAA-AAG-ACATTGAAGTTTTTCTTTTGCCTGG
*
19570 -ATT
472 AAAT
* * * * * * * * *
19573 CCTTTTAGATTGAGGCCCCATAAATATAGTCTTCTCATTAGGATACACGATA-CTGATGCTTTGG
1 -CTTTT--CTT--CG-CCC-----TAT--T-TTC-C-TTA--A-A-ATGAAAGTTCATCCCTTGA
* ** ** * ** * * * * * **** * * *
19637 TTTCG-CAATAAAGGCTTTTTTCCCACCAATCAT--TGTAAAGTCTAAG-TTCGTG-CGTCAAAT
46 ATAAGACAA-GCA-TCGATTCTCCTAACAGTC-TCCTTTCTTTTC-AAGATT-GGGAAG-CCAA-
* ** * * ** * * * ** **
19697 GAGACAAATATGGATTCTAGTAATGAT---CTTCATT-CT-TTTTCAGATAAAC-CACTACAAA-
104 -A-ACACAT-TGCCTT-T-GTTAGGATACCCGACATTGATGCTTT--GGT-GTCTCAAGA-AAAG
* ** * * * ** **
19755 CATATTC-TC-C-TC-TTTAGGACAAAAGACATTGAA-GTTT-T-TCTT--TTGCGTGGAA-ATC
160 C-TTTTCTTCGCGTCGTTTTTG---ATAGA-A-TCAACGTTTGTCTCTTAAATAAGCCGAACAT-
* * *** * * * *
19810 T-TTTCTTCGCCCT-AT--T--TTCC-TTAAAATTAAAGTTCATCCCTTGAATAAGACA-AGCAT
218 TAATAC-TCAAACTAATCCTCATTCCTTTTAGATT-TAG-GCA--CC----ATAA-ACATAG--T
** ** * **** * * * * * *** * *
19867 CGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGC-CAAAACACAATGCCTTTGTTAG
271 C--TTCT-C-ATTAGGATACACGATATTGATGCTTTGGTTTCGC--AACA-AA-GGCTTT-TT-T
*** * * * ** * * * * *** * *
19931 GATACCCGA-CATTG--ATG-CTTTGCT-GT-CT-TAA-GA-A-AAGCTTTTCTTTGTATCGTTT
326 CCCA-CCAATCGTTGTAAAGTCTAAGTTCGTCCTCAAATGAGACAA-ATATGGATTCTA--G-TA
* ** * * * * *
19986 TTGATAGAATCA-ACGTTTGT-CTATTAAAGAAGCCGAACATTAATACTCAAACTAATCCTTATT
386 ATGAT--CTTCATTC-TTTTTCCGA-T--A-AAG-C--AC-----TA--CAAAC--A-CATT-CT
* * *
20049 CCT-TTTAGATTGAGGCCCCATAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG
430 CCTCTTTAG---GA-----C---AA-A-AG-----ACATT--G--A-A-G-T-TT--TTCTTTTG
** *
20113 TTTCGCAGTAAAGG
467 CCT-G--G-AAA-T
* * * *
20127 CTTTTCTTTGCCCTATTTTTCATAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
*
20192 CCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* *
20257 ACATTGATGCTTTGGTGCCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTT
*
20322 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCATTTAGATTTAGGCACCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACCA
*
20387 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTT-GCAACAAAGGCTTTCTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
* *
20451 CCCACCAATCGTTGTGAAGTCTAAGTTCGGGCCTCAAATGAGAC-AATATGGATTCTAGTAATGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTC-GTCCTCAAATGAGACAAATATGGATTCTAGTAATGA
20515 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
390 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
20580 GTTTTTCTTTTGCCTGGAAAT
455 GTTTTTCTTTTGCCTGGAAAT
* *
20601 CTTTTCTTCGCCCTATTTTTCTTAGAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
* *
20666 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCTAAAACACATTGCCATTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* *
20731 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTAATAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTT
* *
20796 GTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACCA
* * * *
20861 TAAACATAGTCTTCTCATTAGCATACACGATATTGATGCTCTGGTTTCGTAACAAAGGTTTTTTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
*
20926 CCCACCAATCGTTGTAAAGTCTAAGTTCGTGCGTCAAATGAGACAAATATGGATTCTAGTAATGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGT-CCTCAAATGAGACAAATATGGATTCTAGTAATGA
* * * * * *
20991 TCTTCATACTTTTTCTGGTAAAGCACTACAAACACATTCTCCTCTTCAGGAAAAAAGATATTGAA
390 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
* *
21056 GTTTTTCTTTTGCTTGAAAAT
455 GTTTTTCTTTTGCCTGGAAAT
* * *
21077 CTTTTCTTCGCCCTATTTTTCTTAGAATGAAAGTTCATCCCTTGAATAAGACAAGAATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
* * *
21142 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCTAAAACACATTGTCATTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
*
21207 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAAAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTT
* * * * *
21272 GTTTCTTAAATAAGCCAAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACCA
* * *
21337 TAAATATAGTCTTCCCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
* *
21402 CCCACCAATCGTAGTAAAGTCTAAGTTCGTGCGTCAAATGAGACAAATATGGATTCTAGTAATGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGT-CCTCAAATGAGACAAATATGGATTCTAGTAATGA
* * * * *
21467 TCTTCATACTTTTTCTGGTAAAGCACTACAAACACATTATCCTCTTTAGGAAAAAAGACATTGAA
390 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
* *
21532 GTTTTTCTTTTGCTTGAAAAT
455 GTTTTTCTTTTGCCTGGAAAT
* * *
21553 CTTTTCTTCGCCCTATTTTCCTTAAAATTAATGTTCATCCCTTGATTAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
21618 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* * * *
21683 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGTTAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTT
* * * *
21748 GTTTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTC-TTCCTTTTAGATTGAGGCCCC
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCC-TCATTCCTTTTAGATTTAGGCACC
* * * *
21812 ATAAATATAGACTTCCCATTAGGATACACGATATTGATGCTTTGG-TTCGCAACAAAGGCTTTCT
260 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTT
* *
21876 TCCCACCAATCATTGTAAAGTCTAAGTTCGGGCCTCAAATGAGAC-AATATGGATTCTAGTAATG
325 TCCCACCAATCGTTGTAAAGTCTAAGTTC-GTCCTCAAATGAGACAAATATGGATTCTAGTAATG
* *
21940 ATCTTCATTCTTTTTCCAATAAAGCACTACAAACACATTCTACTCTTTAGGACAAAAGACATTGA
389 ATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGA
*
22005 AGTTTTTCTTTTGCCAGGAAAT
454 AGTTTTTCTTTTGCCTGGAAAT
* * * *
22027 CTTTTCTTCGCCCTATTTTTCTTAAAATTAATGTTCATCCTTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
* *
22092 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCTAAAACACATTGCCATTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* * *
22157 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTAATAGAATCAACATTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTT
* * *
22222 GTCTCTTAAATATGCCGAACGTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACCA
* *
22287 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGTAACAAAGGATTTTTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
*
22352 CCCACCAATCGTAGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGT-CCTCAAATGAGACAAATATGGATTCTAGTAATGA
* * * *
22417 ACTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCCCTTTAGGACAAAAGACGTTGAA
390 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
22482 GTTTTTCCTTTT-CCTGGAAAT
455 GTTTTT-CTTTTGCCTGGAAAT
* *
22503 CTTTTCTTCGCCATATTTTGCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
22568 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* * *
22633 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTT
* * * *
22698 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACCA
* *
22763 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
* * *
22828 CCCACCAATCGTTGTAAAGTCTAAGTTTGTGCGTTAAATGAGACAAATATGGATTCTAGTAATGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGT-CCTCAAATGAGACAAATATGGATTCTAGTAATGA
* * * *
22893 TCTTCATTCTTTTTCTGGTAAAGCACTACAAACACATTCTGCTCTTTAGGAAAAAAGACATTGAA
390 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
*
22958 GTTTTTCTTTTGCTTGGAAAT
455 GTTTTTCTTTTGCCTGGAAAT
* * **
22979 CTTTTCTTCGCCCTATTTTCCTTAAAATTAATGTTCATCAGTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
* * *
23044 CCTAACAGTCTCCTTTCTTTTTAAGATTGGGAAGCTAAAACACATTGCCATTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
** * * *
23109 ACATTGATTATTTGGTGTCTCACGAAAAGCTTTTCTTCGCGTC-ATTTTAATAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTT
* * * * *
23173 GTCTCTAAAATATGCCGAACATTAAAACTCAAACTAATCCTCATTCTTTTTAGATTTACGCACCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACCA
* * *
23238 TAAACATAGTCTTCTCATTAGCATACACGATATTGATGCTCTGGTTTCGCAACAAAGGTTTTTTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
*
23303 CCCACCAATCGTTGTAAAGTCTAAGTTCGTGCGTCAAATGAGACAAATATGGATTCTAGTAATGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGT-CCTCAAATGAGACAAATATGGATTCTAGTAATGA
* * * * *
23368 TCTTCATACTTTTTCTGGTAAAGCACTACAAACACATTCTCCTCTTTAGGAAAAAAGATATTGAA
390 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
*
23433 GTTTTTCTTTTGCTTGGAAAT
455 GTTTTTCTTTTGCCTGGAAAT
* * **
23454 CTTTTCTTCGCCCTATTTTCCTTAAAATTAATGTTCATCAGTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
* * *
23519 CCTAACAGTCTCCTTTCTTTTTAAGATTGGGAAGCTAAAACACATTGCCATTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
** * * * *
23584 ACATTGATTATTTGGTGTCTCACGAAAAGCTTTTCTTCGCGTCATTATTAATAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTT
* * * * *
23649 GTCTCTAAAATATGCCGAACATTAAAACTCAAACTAATCCTCATTCTTTTTAGATTTACGCACCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACCA
* * * *
23714 TAAACATAGTATTCTCATTAGCATACACGATATTGATGCTTTGG-TTCACAACAAAGGCTTTCTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
* *
23778 CCCACCAATCGTTGTGAAGTCTAAGTTCGGGCCTCAAATGAGAC-AATATGGATTCTAGTAATGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTC-GTCCTCAAATGAGACAAATATGGATTCTAGTAATGA
* * *
23842 TCTTCATTCTTTTTCCGATAAAGGACTACAAACACGTTCTCCTCTTGAGGACAAAAGACATTGAA
390 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
*
23907 GTTTTTCTTTTGCGTGGAAAT
455 GTTTTTCTTTTGCCTGGAAAT
*
23928 CTTTCCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
*
23993 CCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTG-CTATTGTTAGGATACCC
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCT-TTGTTAGGATACCC
* * *
24057 GACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCATTTTTAATAGAATCAACGTT
130 GACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTT
* * * *
24122 TATCTTTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACC
195 TGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACC
*
24187 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCT
260 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTT
*
24252 TCCCACCAATCGTTGTGAAGTCTAAGTTCGTGCCTCAAATGAGAC-AATATGGATTCTAGTAATG
325 TCCCACCAATCGTTGTAAAGTCTAAGTTCGT-CCTCAAATGAGACAAATATGGATTCTAGTAATG
* * *
24316 ATCTTCATTCTTTTTCCGATAAAGGACTACAAACACGTTCTCCTCTTTAGGACAAAAGACATTCA
389 ATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGA
*
24381 AGTTTTTCTTTTGCATGGAAAT
454 AGTTTTTCTTTTGCCTGGAAAT
* * * *
24403 ATTTTCGTCTCCCTATTTTTCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
* *
24468 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCTAAAACACATTGCCATTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* * *
24533 ACATTGATGCTTTGGTGTCT-TAGAAAAAGCTTTTCTTCACGTCGTTTTTAATAGAATCAACGTT
131 ACATTGATGCTTTGGTGTCTCAAG-AAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTT
* *
24597 TATCTTTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATT-CTTCTTAGATTTAGGCAC
195 TGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTT-TTAGATTTAGGCAC
*
24661 CATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTC
259 CATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTT
*
24726 TTCCCACCAATCGTTGTGAAGTCTAAGTTCGTGCCTCAAATGAGAC-AATATGGATTCTAGTAAT
324 TTCCCACCAATCGTTGTAAAGTCTAAGTTCGT-CCTCAAATGAGACAAATATGGATTCTAGTAAT
* * *
24790 GATCTTGATTCTTTTTTCGATAAAGCACTACAAACACATTCTCCTTTTTAGGACAAAAGACATTG
388 GATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTG
24855 AAGTTTTTCTTTTGCCTGGAAAT
453 AAGTTTTTCTTTTGCCTGGAAAT
* * *
24878 CTTTTCTTCGCCCTATTTTTCTTAAAATGAAAGTTCATCCCTTGAACAAGACAAGCATCAATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
* * *
24943 CCTAACAGTCTCCTTTATTTTCAAGATTGGGAAGCTAAAACACATTGCCATTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* *
25008 ACATTGATGCTTTGGTGTCTC-AGAAAAAGCTTTTCTTCACGTCGTTTTTAATAGAATCAACGTT
131 ACATTGATGCTTTGGTGTCTCAAG-AAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTT
* * * *
25072 TGTCTCTTAAATATGCCGAACGTTAATACTCAAACTAATACTCATTCTTTTTAGATTTAGGCACC
195 TGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACC
25137 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCT
260 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTT-T
*
25202 TT-CCACCAATCGTTGTGAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAAT
324 TTCCCACCAATCGTTGTAAAGTCTAAGTTCGT-CCTCAAATGAGACAAATATGGATTCTAGTAAT
* * *
25266 GAACTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCCCTTTAGGACAAAAGACATTG
388 GATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTG
*
25331 AAGTTTTTCCTTTT-CCAGGAAAT
453 AAGTTTTT-CTTTTGCCTGGAAAT
* *
25354 CTTTTCTTCGCCATATTTTGCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
25419 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* * * *
25484 ACATTGATGCTTTGCTGTCTTAAGAAAATCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTT
* * * * *
25549 GCCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACCA
* *
25614 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
*
25679 CCCACCAATCGTTGTAAAGTCTAAGTTCGTCCGTCAAATGAGACAAATATGGATTCTAGTAAAGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGTCC-TCAAATGAGACAAATATGGATTCTAGTAATGA
* *
25744 TCTTCATTCTTTTTCCGATAAACCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGAA
390 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
*
25809 GTTTTTCTTTTGCGTGGAAAT
455 GTTTTTCTTTTGCCTGGAAAT
*
25830 CTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
*
25895 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* * * **
25960 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTTGTATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTT
* * * * *
26025 GTCTATTAAAGAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACCA
* *
26090 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTT
26153 CTTTGCCCTA
Statistics
Matches: 12081, Mismatches: 1228, Indels: 776
0.86 0.09 0.06
Matches are distributed among these distances:
450 2 0.00
451 4 0.00
452 1 0.00
453 1 0.00
454 2 0.00
455 7 0.00
456 6 0.00
457 12 0.00
458 1 0.00
459 3 0.00
460 4 0.00
461 2 0.00
462 3 0.00
463 5 0.00
464 8 0.00
465 26 0.00
466 20 0.00
467 35 0.00
468 48 0.00
469 18 0.00
470 22 0.00
471 10 0.00
472 123 0.01
473 26 0.00
474 2607 0.22
475 2102 0.17
476 6245 0.52
477 197 0.02
478 15 0.00
479 11 0.00
480 5 0.00
481 4 0.00
482 2 0.00
483 11 0.00
484 10 0.00
485 4 0.00
486 4 0.00
487 5 0.00
489 8 0.00
490 3 0.00
491 11 0.00
492 13 0.00
493 7 0.00
494 10 0.00
495 3 0.00
496 11 0.00
497 6 0.00
498 7 0.00
499 18 0.00
500 5 0.00
501 7 0.00
502 9 0.00
503 7 0.00
504 11 0.00
505 3 0.00
506 13 0.00
507 10 0.00
508 2 0.00
509 6 0.00
510 5 0.00
512 4 0.00
514 3 0.00
515 2 0.00
516 3 0.00
517 2 0.00
518 4 0.00
519 5 0.00
520 8 0.00
521 2 0.00
522 8 0.00
523 14 0.00
524 7 0.00
525 6 0.00
526 18 0.00
527 3 0.00
528 18 0.00
529 6 0.00
530 21 0.00
531 27 0.00
532 13 0.00
533 6 0.00
534 39 0.00
535 28 0.00
536 6 0.00
537 1 0.00
538 4 0.00
539 8 0.00
540 9 0.00
541 1 0.00
542 1 0.00
543 3 0.00
545 2 0.00
546 1 0.00
548 3 0.00
549 1 0.00
551 2 0.00
553 6 0.00
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (475 bp):
CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTT
GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACCA
TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
CCCACCAATCGTTGTAAAGTCTAAGTTCGTCCTCAAATGAGACAAATATGGATTCTAGTAATGAT
CTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAG
TTTTTCTTTTGCCTGGAAAT
Found at i:13825 original size:950 final size:952
Alignment explanation
Indices: 11980--26152 Score: 14803
Period size: 950 Copynumber: 14.8 Consensus size: 952
11970 GCAATAAAGG
* * *
11980 CTTTTCTTTGCCCTATTTTTCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
* *
12045 CCTAACAGTCTCATTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* * * * *
12110 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTTGTATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTTT
* * *
12175 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTGAGGCACCA
* *
12240 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
* *
12305 CCCACCAATCGTTGTAAAGTCTAAGTTCGT-CTGTCAAATGAGACAAATATGGATTCTAGTAAAG
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGTGC-CTCAAATGAGACAAATATGGATTCTAGTAATG
* *
12369 ATCTTCATTCTTTTTCCGATAAACCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGA
390 ATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGA
*
12434 AGTTTTTCTTTTGCGTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTT
455 AGTTTTTCTTTTGCCTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTT
12499 GAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACAC
520 GAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACAC
* * * * * *
12564 GTTGCCTTTGTTAGGATACCCGACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATC
585 ATTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTC
* * *
12629 GTTTTTGATAGAATCAACGTTTGTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTA
650 GTTTTTAATAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCA
* * * *
12694 TTCCTTTTAGATTGAGGCCCCATAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTG
715 TTCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTG
*
12759 GTTTCGCAATAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGT-CCGTCAAATGAG
780 GTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCC-TCAAATGAG
* * * *
12823 ACAAATATGGATTCTAGTAAAGATCTTCATTCTTTTTCCGATAAACCACTACAAACATATTCTCC
844 ACAAATATGGATTCTAGTAATGATCTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCC
*
12888 TCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCGTGGAAAT
909 TCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAAT
* *
12932 CTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
*
12997 CCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* * *
13062 ACATTGATGGTTTGGTGCCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTTT
* *
13127 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCATTTAGATTTAGGCACCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTGAGGCACCA
*
13192 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTT-GCAACAAAGGCTTTCTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
* *
13256 CCCACCAATCGTTGTGAAGTCTAAGTTCGGGCCTCAAATGAGAC-AATATGGATTCTAGTAATGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGA
* *
13320 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGTCATTCAA
391 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
* * * *
13385 GTTTTTCTTTTGCCTGGAAATCTTTTCTTCGCCCTATTTTTCTTAAAATTAATGTTCATCCTTTG
456 GTTTTTCTTTTGCCTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTG
* *
13450 AATAAGACAACCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCTAAAACACA
521 AATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACA
13515 TTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCG
586 TTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCG
* * *
13580 TTTTTAATAGAATCAACATTTGTCTCTTAAATATGCCGAACGTTAATACTCAAACTAATCCTCAT
651 TTTTTAATAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCAT
13645 TCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG
716 TCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG
* * *
13710 TTTCGTAACAAAGGATTTTTTCCCACCAATCGTAGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC
781 TTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC
* *
13775 AAATATGGATTCTAGTAATGAACTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCCC
846 AAATATGGATTCTAGTAATGATCTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTC
13840 TTTAGGACAAAAGACATTGAAGTTTTTCCTTTT-CCTGGAAAT
911 TTTAGGACAAAAGACATTGAAGTTTTT-CTTTTGCCTGGAAAT
* * *
13882 CTTTTCTTCGCCATATTTTGCTTAAAATGAAAGTTCATCCTTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
13947 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* * *
14012 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTTT
* * *
14077 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTGAGGCACCA
* * *
14142 TAAATATAGTCTTCTTATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
* *
14207 CCCACCAATCGTTGTAAAGTCTAAGTTCGTGCGTTAAATGAGACAAATATGGATTCTAGTAATGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGA
* * * *
14272 TCTTCATTCTTTTTCTGGTAAAGCACTACAAACACATTCTGCTCTTTAGGAAAAAAGACATTGAA
391 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
* * * **
14337 GTTTTTCTTTTGCTTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATTAATGTTCATCAATTG
456 GTTTTTCTTTTGCCTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTG
* *
14402 AATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTTAAGATTGGGAAGCTAAAACACA
521 AATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACA
** * * *
14467 TTGCCATTGTTAGGATACCCGACATTGATTATTTGGTGTCTCACGAAAAGCTTTTCTTCGCGTCA
586 TTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCG
* * * *
14532 TTATTAATAGAATCAACGTTTGTCTCTAAAATATGCCGAACATTAAAACTCAAACTAATCCTCAT
651 TTTTTAATAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCAT
* * *
14597 TCTTTTTAGATTTACGCACCATAAACATAGTATTCTCATTAGCATACACGATATTGATGCTTTGG
716 TCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG
* * * *
14662 -TTCACAACAAAGGCTTTCTTCCCACCAATCGTTGTGAAGTCTAAGTTCGGGCCTCAAATGAGAC
781 TTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC
*
14726 -AATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTC
846 AAATATGGATTCTAGTAATGATCTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTC
*
14790 TTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCGTGGAAAT
911 TTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAAT
* * *
14832 CATTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAACATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
* *
14897 CCTAATAGTCTCCTTTCTCTTCAAGATTGGGAAGCCAAAACACATTG-CTATTGTTAGGATACCC
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCT-TTGTTAGGATACCC
* * * *
14961 GACATTGAGGCTCTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTAATAGAATCAACGTT
130 GACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTT
* * *
15026 TTTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATT-CTTATTAGATTTAGGCAC
195 TGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTT-TTAGATTGAGGCAC
* * *
15090 CATAAACATAGTCTTCTCATTAGCATACACGATATTGATGCTCTGGTTTCGCAACAAAGGTTTTT
259 CATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTT
* * * *
15155 TTCCCACCAATCGTTGTAAAGTCTAAGTTTGAT-CCTCAAATGAGACAAACACGGATTCTAGGAA
324 TTCCCACCAATCGTTGTAAAGTCTAAGTTCG-TGCCTCAAATGAGACAAATATGGATTCTAGTAA
* * *
15219 TGAACTTCGTTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATT
388 TGATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATT
* *
15284 GAAGTTTTTCTTTTGCTTGGAAATCTTTTCTTCGCACTATTTTCCTTAAAATGAAAGTTCATCCC
453 GAAGTTTTTCTTTTGCCTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCC
*
15349 TTGAATAAGACAAGCATCAATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAAC
518 TTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAAC
* *
15414 ACATTGCTATTGTTAGCATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACG
583 ACATTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACG
* * *
15479 TCGTTTTTGATAGAATCAACGTTTGTCTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCT
648 TCGTTTTTAATAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCT
* * * * *
15544 CATTCTTTTTAAATTTAGGCACCGTAAACATATTCTTCTCATTAGGATACACGATATTGATTCTC
713 CATTCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
* * *
15609 TGGTTTCGCAACAAAGGCGTTTTTCCCACCAATCATTGTAAAGTCTAAGTTTGTGCCTCAAATGA
778 TGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGA
* * * * * * *
15674 GACAAACACGGATTCTAGTAATTAACTTCATTCTTTTCCTGATAAAGTACTATAAACACATTCTC
843 GACAAATATGGATTCTAGTAATGATCTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTC
* *
15739 TTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTTCCTGGAAAT
908 CTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAAT
* * * *
15784 CTTTTCTTCGCCATATTTTGCTTAAAATGAACGTTCATCCCTTGAATAAGACAAGCATCGATTAT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
*
15849 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACATATTG-CTATTGTTAGGATACCC
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCT-TTGTTAGGATACCC
* * * * *
15913 GACATTGATGCTTTGGTGTCACGAGAAAAGCTTTTCTTCACGTCATTTTTAATAGAATCAACGTT
130 GACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTT
* * * *
15978 CGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACC
195 TGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTGAGGCACC
* *
16043 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTCTGGTTTCGCAACAAAGGTTTTTT
260 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTT
* * *
16108 TCCCACCAATCGTTGTAAAGTCTAAGTTCGAT-CCTCAAATGAGACAAACACGGATTCTAGGAAT
325 TCCCACCAATCGTTGTAAAGTCTAAGTTCG-TGCCTCAAATGAGACAAATATGGATTCTAGTAAT
* * *
16172 GAACTTCGTTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTG
389 GATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTG
*
16237 AAGTTTTTCTTTTG-CTAGGAAATCTTTTCTTCGCTCTATTTTCCTTAAAATGAAAGTTCATCCC
454 AAGTTTTTCTTTTGCCT-GGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCC
* *
16301 TTGAATAAGACAAGCATCAATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGTCAAAAC
518 TTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAAC
* *
16366 ACATTGCTATTGTTAGGATAACCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACG
583 ACATTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACG
* * * ** *
16431 TCGTTTTTGATAGAATCAACGCTGGTCTCTTAAATAAGCTAAACTTTAATACTCAAACTAATCCT
648 TCGTTTTTAATAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCT
*
16496 CATTCTTTTTAGATTTAGGCAGCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
713 CATTCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
* * * *
16561 TGG-TTCGCAACAAAGGCTTTCTTCCCACCAATCGTTGTGAAGTCTAAGTTTGGGCCTCAAATGA
778 TGGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGA
*
16625 GAC-AATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTC
843 GACAAATATGGATTCTAGTAATGATCTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTC
16689 CTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAAT
908 CTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAAT
* * *
16734 CTTTTCTTCGCCCTATTTTTCTTAAAATGAAAGTTCATCCCATGAATAAGACAAGCATCGTTTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
*
16799 CCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* * * *
16864 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGTATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTTT
* * *
16929 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTGAGGCACCA
* * *
16994 TAAATATAGTCTTCTCATTAGGATACACGATACTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
* *
17059 CCCACCAATCATTGTAAAGTCTAAGTTCGTGCGTCAAATGAGACAAATATGGATTCTAGTAATGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGA
* * *
17124 TCTTCATTCTTTTTCAGATAAACCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGAA
391 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
* *
17189 GTTTTTCTTTTGCGTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTG
456 GTTTTTCTTTTGCCTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTG
17254 AATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACA
521 AATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACA
* * * * ****
17319 ATGCCTTTGTTAGGATACCCGACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTTGTATCG
586 TTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCG
* * * * *
17384 TTTTTGATAGAATAAACGTTTGTCTATTAAAGAAGCCGAACATTAATACTCAAACTAATCCTTAT
651 TTTTTAATAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCAT
* * * *
17449 TCCTTTTAGATTGAGGCCCCATAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG
716 TCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG
** ** * ** * * ** * * ** *
17514 TTTCGCAGTAAAGGCTTTTCTTTGC-CCTATTTTTCATAAAATGAAAGTTCATCCCTTGAATAAG
781 TTTCGCAACAAAGGCTTTT-TTCCCACCAATCGTT-GTAAAGTCTAAGTTCGTGCCTCAAATGAG
** * * ** ** * * ** *
17578 ACAAGCATCGTTTCTCCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGC-C-A-AAACACATT-
844 ACAAATATGGATTCTAGTAATGATCTTCATTCTTTTCCCGA-T--AAAGCACTACAAACACATTC
* * * *** ** ** * *
17639 GCCTTTGTTAGGATACCCGACATTG-A-TGCTT-TGGTGCCTCAAGAAAAG
906 TCCTCT-TTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCT---GGAAAT
* *** * * * ** * * * ** *
17687 CTTTTCTTCG-CGTCATTTTTGATAGAATCAACGTTTGTCTCTTAAATAAGCCGAA-CATTAATA
1 CTTTTCTTCGCCCT-ATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGAC-AAGCATCGATT
* * * * * * * * * * *
17750 CT-CAAACTAATCCTCATTCCATTT--AGATTTAGGCA-CCATAA-ACATAGTCTTCTCATTAGG
64 CTCCTAAC-AGT-CTCCTTTCTTTTCAAGA-TTGGGAAGCCAAAACACATTGCCTT-T-GTTAGG
* * * * * * **
17810 ATACACGATATTGATGCTTTGG-GT-TGCAACAAAGGC-TTTCTTCCCACCAATCGTTG-T-GAA
124 ATACCCGACATTGATGCTTTGGTGTCT-CAAGAAAAGCTTTTCTTCGCATC-ATTTTTGATAGAA
* * * * * * ** * * * *
17870 GTCTAA-GTTCGGGC-CTCAAATGAGAC-AATATGGATTCT-AGTAA-TGATCTTCATTCTTTTT
187 -TC-AACGTT-TGTCTCTTAAATAAGCCGAACATTAATACTCA--AACTAATCCTCATTCCTTTT
* * * * * * * * * * * * * * * ** *
17930 CCGA-TAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGC
247 -AGATTGAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCG-
*** * * * ** * ** * * ** *
17994 CTGGAAA-TCTTTTCTTCGC-CCTATTTTTCTTAGAA-TGAAAGTTCATCCCTTGAATAAGACAA
310 CAACAAAGGCTTTT-TTCCCACCAATCGTT-GTA-AAGTCTAAGTTCGTGCCTCAAATGAGACAA
** * ** * * * * *** * *
18056 GCATCGATTCTCCTAA-CAGTCTCCTTTC-TTTTCAAGATTGGGAAGCTA-AAACACATTGC-CA
372 ATATGGATTCTAGTAATGA-TCTTCATTCTTTTTC-CGATAAAGCA-CTACAAACACATT-CTCC
* *** * * ** * ** * * *
18117 T-TGTTAGGATACCCGACATTGATGCTTTGGTGTCT-CAAGAAAAGCTTTTCTTCG-CGTCATTT
433 TCT-TTAGGACAAAAGACATTGAAGTTTTTCT-TTTGCCTGGAAATCTTTTCTTCGCCCT-ATTT
*** * * * ** * * * * ** * * * *
18179 TTAATAGAATCAACGTTTGTCTCTTAAATATGCCGAA-CATTAATACT-CAAACTAATC-CTCAT
495 TCCTTAAAATGAAAGTTCATCCCTTGAATAAGAC-AAGCATCGATTCTCCTAAC-AGTCTC-CTT
* * * * * * * * * * * *
18241 TCTTTT-TAGATTTAGGCA-CCATAA-ACATAGTCTTCTCATTAGCATACACGATATTGATGCTC
557 TCTTTTCAAGA-TTGGGAAGCCAAAACACATTGCCAT-T-GTTAGGATACCCGACATTGATGCTT
* * * * * * *
18303 TGGTTTCGT-AA-CAAAGGTTTTTTTCCCACCAATCG-TTGTAA-AG--TCTAA-GTTCGTGCGT
619 TGGTGTC-TCAAGAAAAGCTTTTCTT--CA-C-GTCGTTTTTAATAGAATC-AACGTTTGT-C-T
* * * * ** * * * * * * * * * *
18361 C--AAATGAGACAAATATGGATTCT-AGTAA-TGATCTTCATACTTTTTCTG-GTAAAGCACTAC
676 CTTAAATAAGCCGAACATTAATACTCA--AACTAATCCTCATTCTTTTT-AGATTTAGGCACCAT
* * * * * * * * * ** * *** **
18421 AAACACATTCTCCTCTTTAGGAAAAAAGATATTGAAGTTTTTCTTTTGCTTGAAAATCTTTTCTT
738 AAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTT-TT
* * ** * ** * * ** * * **
18486 CGC-CCTATTTTTCTTAGAA-TGAAAGTTCATCCCTTGAATAAGACAAGA-ATCGATTCTCCTAA
802 CCCACCAATCGTT-GTA-AAGTCTAAGTTCGTGCCTCAAATGAGACAA-ATATGGATTCTAGTAA
* * * ** *** * * * * ***
18548 -CAGTCTCCTTTCTTTTCAAGATTGGGAAGCTA-AAACACATTGTCAT-TGTTAGGATACCCGAC
864 TGA-TCTTCATTCTTTTCCCGATAAAGCA-CTACAAACACATTCTCCTCT-TTAGGACAAAAGAC
* * ** * ** * *
18610 ATTGATGCTTTGGTGTCT-CAAGAAAAG
926 ATTGAAGTTTTTCT-TTTGCCTGGAAAT
* ** * * ** ** * * * ** *
18637 CTTTTCTTCGCGTCGT-TTTT-GATAAAATCAACGTTTGTTTCTTAAATAAGCCAAACATTAATA
1 CTTTTCTTCGC--CCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATT
* * * ** * * * * **
18700 CT-CAAACTAATC-CTTATTCCTTTT--AGATTGAGG-CCCCATAA-ATATAGTCTTCCCATTAG
64 CTCCTAAC-AGTCTCCT-TT-CTTTTCAAGATTG-GGAAGCCAAAACACATTGCCTT--TGTTAG
* * * * * * * * **
18759 GATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTT-TTCCCACCAATCGT-AGTA-AA
123 GATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGA-TAGAA
* * * * * ** * * * * *
18821 GTCTAA-GTTCGTGCGTC--AAATGAGACAAATATGGATTCT-AGTAA-TGATCTTCATACTTTT
187 -TC-AACGTTTGT-C-TCTTAAATAAGCCGAACATTAATACTCA--AACTAATCCTCATTCCTTT
* * * * * * * * * * * * * * * ** *
18881 TCTG-GTAAAGCACTACAAACACATTCTCCTCTTTAGGAAAAAAGACATTTA-G-TTTTCTTTTG
246 T-AGATTGAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCG
*** * * * * * * * * ** *
18943 CGTGGAAA-TCTTTTCTTCGC-CCTAT-TTTCCTTAAAAT-TAAAGTTCATCCCTTGAATAAGAC
310 C-AACAAAGGCTTTT-TTCCCACCAATCGTT--GTAAAGTCT-AAGTTCGTGCCTCAAATGAGAC
** ** ** * * * * * *
19004 AAGCATCAATTCTCCTAA-CAGTCTCCTTTC-TTTTCAAGATTGGAAG--C--CAAACACATT-G
370 AAATATGGATTCTAGTAATGA-TCTTCATTCTTTTTC-CGA-T-AAAGCACTACAAACACATTCT
* * *** * * * ** * * *
19062 CCTTTGTTAGGATACCCGACATTGATGCTTTGCTGTCTT--AAGAAAAGCTTTTCTTCGCATCGT
431 CCTCT-TTAGGACAAAAGACATTGAAGTTTTTCT-T-TTGCCTGGAAATCTTTTCTTCGC--CCT
** * * * ** ** * * ** * * *
19125 -TTTT-GATAGAATCAACGTTTGTCTATTAAATAAGCCGAA-CATTAATACT-CAAACTAATC-C
491 ATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGAC-AAGCATCGATTCTCCTAAC-AGTCTC
* * * * * * * * * *
19185 TTATTCCTTT--AGA-TGAGG--GCCCATAA-ATATAGTCTTCTCTTAGGATACAC-ATATTGAT
554 CT-TTCTTTTCAAGATTG-GGAAG-CCAAAACACATTGCCAT-TGTTAGGATACCCGACATTGAT
* * * * * * *
19243 -CTTTTGGTTTCGC-ATAAAGGC-TTTCTTTCCCCCATCG--TGTAA-AG--TCTAA-G--TG--
615 GC-TTTGGTGTCTCAAGAAAAGCTTTTC-TT--CACGTCGTTTTTAATAGAATC-AACGTTTGTC
* * * * * * * ** *
19295 GC-TAAAT-AG-C-AATATGATTATAAGCT-AAGCATACA-ACACA-TCTTCTTTGGA-AAAGAC
675 TCTTAAATAAGCCGAACAT--TAAT-A-CTCAAAC-TA-ATCCTCATTCTT-TTTAGATTTAGGC
** *** * * * * * * * *
19352 ATGAGTTTTTCTTTCGAAATCTT-TC-TT-GG-TTCATCCTGA-ATAAGACAGCATCGATTCTC-
733 ACCA--TAAAC-AT---AGTCTTCTCATTAGGATACA--C-GATAT-TGA-TGCTTTGGTT-TCG
* ** **** ** *** * *** * *
19411 CTAAC-AA-TCTCCTTTCTTTTCAA--GATTGGGAAG-CTAAACACATTGCCATTGTTAGGATAC
786 C-AACAAAGGCTTTTTTCCCACCAATCG-TTGTAAAGTCTAAGTTC-GTGCC--TCAAATGAGA-
** * * * ** ** ***** * * *
19471 CCGACATTGATGCT--TGGTG--C-TCAAAGCTTTTCTTCGCG-TCTTTTTA-TAGAATCAACGT
845 CAAATATGGATTCTAGTAATGATCTTC-ATTCTTTTC--C-CGAT-AAAGCACTACAAAC-ACAT
* * * * ** * * **** ** *
19529 T-T-GTCTCTA-AATAAGCCGAACATTAAACTCAAACTAAT-CCT---ATT
904 TCTCCTCTTTAGGACAA-AAG-ACATTGAAGTTTTTCTTTTGCCTGGAAAT
* * ** **** * * * * * *
19573 C-CTT-TTAG-ATTGAGGCCCCAT-AAAT-ATAG-TCTTCTCATTAGGATACACGATACTGATGC
1 CTTTTCTTCGCCCT-ATTTTCCTTAAAATGAAAGTTCATC-CCTT-GAATA-A-G--AC--AAGC
* * * * ** **** * ** * * *** *
19632 TTTGGTT-TCGCAATAA-AGGCTTTTTTCCCACCAATCATTGTAAAGTCTAAGTTC-GTGCGTCA
57 ATCGATTCTC-C--TAACAGTCTCCTTTCTTTTCAA-GATTGGGAAGCCAAAACACATTGC--C-
** * * ** ** * * *
19694 AATGAGACAAATATGGATTCTAGTA-A-TGAT-CTTCATTCTTTTTC-AGATAAACCACTACAAA
115 --TTTG----TTA-GGATACCCG-ACATTGATGCTT--TGGTGTCTCAAGA-AAA--GCT-----
** * * * ** * * * * ***
19755 CATATTCTCCTC-TTTAGGACAAAAGACATTGAA-GTTTTTCTTTTGCGTGGAAATCTTTTCTTC
162 TTTCTTCGCATCATTTTTG---ATAGA-A-TCAACGTTTGTC---T-C-T-TAAA--TAAGC--C
** * * * * *** * * * * * *** *
19818 GCCCTATT-TTCCTTAAAATTAAAGTTCATCCCTTGAATAAGA--CAAGCATCGATTCTCCTAAC
212 GAAC-ATTAATAC-TCAAACTAATCCTCATTCCTT---TTAGATTGAGGCA-CCA-TAAAC--AT
* * * ** * ** ** ** ** * * *
19880 AGTCTCCTTTCTTTTCAAGATTGGGAAGCCA-AAACACAATGCCTTTGTTAGGATACCCGACATT
268 AGTCT--TCTC-ATT-AGGA-T-ACACGATATTGATGCTTTG---GT-TTCGCA-A--C-A-A--
* * ** ** * ** * * *
19944 GATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTTGTATCGTTTTTGATAGAATCAACGTTTGTCT-
316 -AGGCTTT--TTTC-CCA-CCAA-----TCGTTGTAAAG--TCT-A-AG--T--TCG--TGCCTC
* * * * ** * * * * * * * *
20008 ATTAAAGAAGCCGAACATTAATACTCA--AACTAATCCTT-ATTCCTTTT-AGATTGAGGCCCCA
361 A--AATG-AGACAAATATGGATTCT-AGTAA-TGAT-CTTCATTCTTTTTCCGA-TAAAGCACTA
* * * * * * * * * * * * ** * * * *
20069 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCG-CAGTAAAGGCTTTTC
419 CAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAA-TCTTTTC
* * * *
20133 TTTGCCCTATTTTTCATAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCTCCTAAC
483 TTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAAC
* *
20198 AATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTG
548 AGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCATTGTTAGGATACCCGACATTG
* * * *
20263 ATGCTTTGGTGCCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTGATAGAATCAACGTTTGTCTCT
613 ATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTAATAGAATCAACGTTTGTCTCT
**
20328 TAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCATTTAGATTTAGGCACCATAAACA
678 TAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCATAAACA
*
20393 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTT-GCAACAAAGGCTTTCTTCCCACC
743 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACC
* *
20457 AATCGTTGTGAAGTCTAAGTTCGGGCCTCAAATGAGAC-AATATGGATTCTAGTAATGATCTTCA
808 AATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCA
*
20521 TTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTT
873 TTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTT
20586 CTTTTGCCTGGAAAT
938 CTTTTGCCTGGAAAT
* *
20601 CTTTTCTTCGCCCTATTTTTCTTAGAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
* *
20666 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCTAAAACACATTGCCATTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* *
20731 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTAATAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTTT
* * *
20796 GTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTGAGGCACCA
* * * *
20861 TAAACATAGTCTTCTCATTAGCATACACGATATTGATGCTCTGGTTTCGTAACAAAGGTTTTTTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
*
20926 CCCACCAATCGTTGTAAAGTCTAAGTTCGTGCGTCAAATGAGACAAATATGGATTCTAGTAATGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGA
* * * * * *
20991 TCTTCATACTTTTTCTGGTAAAGCACTACAAACACATTCTCCTCTTCAGGAAAAAAGATATTGAA
391 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
* * * *
21056 GTTTTTCTTTTGCTTGAAAATCTTTTCTTCGCCCTATTTTTCTTAGAATGAAAGTTCATCCCTTG
456 GTTTTTCTTTTGCCTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTG
* *
21121 AATAAGACAAGAATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCTAAAACACA
521 AATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACA
* *
21186 TTGTCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCG
586 TTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCG
* * * * *
21251 TTTTTGATAAAATCAACGTTTGTTTCTTAAATAAGCCAAACATTAATACTCAAACTAATCCTTAT
651 TTTTTAATAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCAT
* * * * *
21316 TCCTTTTAGATTGAGGCCCCATAAATATAGTCTTCCCATTAGGATACACGATATTGATGCTTTGG
716 TCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG
* * *
21381 TTTCGCAAGAAAGGCTTTTTTCCCACCAATCGTAGTAAAGTCTAAGTTCGTGCGTCAAATGAGAC
781 TTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC
* * * * *
21446 AAATATGGATTCTAGTAATGATCTTCATACTTTTTCTGGTAAAGCACTACAAACACATTATCCTC
846 AAATATGGATTCTAGTAATGATCTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTC
* * *
21511 TTTAGGAAAAAAGACATTGAAGTTTTTCTTTTGCTTGAAAAT
911 TTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAAT
* * *
21553 CTTTTCTTCGCCCTATTTTCCTTAAAATTAATGTTCATCCCTTGATTAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
21618 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* * * *
21683 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGTTAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTTT
* * *
21748 GTTTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTC-TTCCTTTTAGATTGAGGCCCC
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCC-TCATTCCTTTTAGATTGAGGCACC
* * * *
21812 ATAAATATAGACTTCCCATTAGGATACACGATATTGATGCTTTGG-TTCGCAACAAAGGCTTTCT
260 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTT
* *
21876 TCCCACCAATCATTGTAAAGTCTAAGTTCGGGCCTCAAATGAGAC-AATATGGATTCTAGTAATG
325 TCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATG
* *
21940 ATCTTCATTCTTTTTCCAATAAAGCACTACAAACACATTCTACTCTTTAGGACAAAAGACATTGA
390 ATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGA
* * * * *
22005 AGTTTTTCTTTTGCCAGGAAATCTTTTCTTCGCCCTATTTTTCTTAAAATTAATGTTCATCCTTT
455 AGTTTTTCTTTTGCCTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTT
*
22070 GAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCTAAAACAC
520 GAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACAC
22135 ATTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTC
585 ATTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTC
* * *
22200 GTTTTTAATAGAATCAACATTTGTCTCTTAAATATGCCGAACGTTAATACTCAAACTAATCCTCA
650 GTTTTTAATAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCA
22265 TTCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTG
715 TTCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTG
* * *
22330 GTTTCGTAACAAAGGATTTTTTCCCACCAATCGTAGTAAAGTCTAAGTTCGTGCCTCAAATGAGA
780 GTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGA
* *
22395 CAAATATGGATTCTAGTAATGAACTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCC
845 CAAATATGGATTCTAGTAATGATCTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCT
*
22460 CTTTAGGACAAAAGACGTTGAAGTTTTTCCTTTT-CCTGGAAAT
910 CTTTAGGACAAAAGACATTGAAGTTTTT-CTTTTGCCTGGAAAT
* *
22503 CTTTTCTTCGCCATATTTTGCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
22568 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* * *
22633 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTTT
* * *
22698 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTGAGGCACCA
* *
22763 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
* * *
22828 CCCACCAATCGTTGTAAAGTCTAAGTTTGTGCGTTAAATGAGACAAATATGGATTCTAGTAATGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGA
* * * *
22893 TCTTCATTCTTTTTCTGGTAAAGCACTACAAACACATTCTGCTCTTTAGGAAAAAAGACATTGAA
391 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
* * * **
22958 GTTTTTCTTTTGCTTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATTAATGTTCATCAGTTG
456 GTTTTTCTTTTGCCTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTG
* *
23023 AATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTTAAGATTGGGAAGCTAAAACACA
521 AATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACA
** * *
23088 TTGCCATTGTTAGGATACCCGACATTGATTATTTGGTGTCTCACGAAAAGCTTTTCTTCGCGTC-
586 TTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCG
* * * *
23152 ATTTTAATAGAATCAACGTTTGTCTCTAAAATATGCCGAACATTAAAACTCAAACTAATCCTCAT
651 TTTTTAATAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCAT
* * *
23217 TCTTTTTAGATTTACGCACCATAAACATAGTCTTCTCATTAGCATACACGATATTGATGCTCTGG
716 TCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG
* *
23282 TTTCGCAACAAAGGTTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCGTCAAATGAGAC
781 TTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC
* * * *
23347 AAATATGGATTCTAGTAATGATCTTCATACTTTTTCTGGTAAAGCACTACAAACACATTCTCCTC
846 AAATATGGATTCTAGTAATGATCTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTC
* * *
23412 TTTAGGAAAAAAGATATTGAAGTTTTTCTTTTGCTTGGAAAT
911 TTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAAT
* * **
23454 CTTTTCTTCGCCCTATTTTCCTTAAAATTAATGTTCATCAGTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
* * *
23519 CCTAACAGTCTCCTTTCTTTTTAAGATTGGGAAGCTAAAACACATTGCCATTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
** * * * *
23584 ACATTGATTATTTGGTGTCTCACGAAAAGCTTTTCTTCGCGTCATTATTAATAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTTT
* * * * * *
23649 GTCTCTAAAATATGCCGAACATTAAAACTCAAACTAATCCTCATTCTTTTTAGATTTACGCACCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTGAGGCACCA
* * * *
23714 TAAACATAGTATTCTCATTAGCATACACGATATTGATGCTTTGG-TTCACAACAAAGGCTTTCTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
* *
23778 CCCACCAATCGTTGTGAAGTCTAAGTTCGGGCCTCAAATGAGAC-AATATGGATTCTAGTAATGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGA
* * *
23842 TCTTCATTCTTTTTCCGATAAAGGACTACAAACACGTTCTCCTCTTGAGGACAAAAGACATTGAA
391 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
* *
23907 GTTTTTCTTTTGCGTGGAAATCTTTCCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTG
456 GTTTTTCTTTTGCCTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTG
*
23972 AATAAGACAAGCATCGATTCTCCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACA
521 AATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACA
* *
24037 TTGCTATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCA
586 TTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCG
* * *
24102 TTTTTAATAGAATCAACGTTTATCTTTTAAATATGCCGAACATTAATACTCAAACTAATCCTCAT
651 TTTTTAATAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCAT
24167 TCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG
716 TCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG
* *
24232 TTTCGCAACAAAGGCTTTCTTCCCACCAATCGTTGTGAAGTCTAAGTTCGTGCCTCAAATGAGAC
781 TTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC
* * *
24297 -AATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGGACTACAAACACGTTCTCCTC
846 AAATATGGATTCTAGTAATGATCTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTC
* *
24361 TTTAGGACAAAAGACATTCAAGTTTTTCTTTTGCATGGAAAT
911 TTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAAT
* * * *
24403 ATTTTCGTCTCCCTATTTTTCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
* *
24468 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCTAAAACACATTGCCATTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* * * * *
24533 ACATTGATGCTTTGGTGTCT-TAGAAAAAGCTTTTCTTCACGTCGTTTTTAATAGAATCAACGTT
131 ACATTGATGCTTTGGTGTCTCAAG-AAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTT
* * *
24597 TATCTTTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATT-CTTCTTAGATTTAGGCAC
195 TGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTT-TTAGATTGAGGCAC
*
24661 CATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTC
259 CATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTT
*
24726 TTCCCACCAATCGTTGTGAAGTCTAAGTTCGTGCCTCAAATGAGAC-AATATGGATTCTAGTAAT
324 TTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAAT
* * *
24790 GATCTTGATTCTTTTTTCGATAAAGCACTACAAACACATTCTCCTTTTTAGGACAAAAGACATTG
389 GATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTG
*
24855 AAGTTTTTCTTTTGCCTGGAAATCTTTTCTTCGCCCTATTTTTCTTAAAATGAAAGTTCATCCCT
454 AAGTTTTTCTTTTGCCTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCT
* * * *
24920 TGAACAAGACAAGCATCAATTCTCCTAACAGTCTCCTTTATTTTCAAGATTGGGAAGCTAAAACA
519 TGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACA
24985 CATTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTC-AGAAAAAGCTTTTCTTCACG
584 CATTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAG-AAAAGCTTTTCTTCACG
* * *
25049 TCGTTTTTAATAGAATCAACGTTTGTCTCTTAAATATGCCGAACGTTAATACTCAAACTAATACT
648 TCGTTTTTAATAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCT
25114 CATTCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
713 CATTCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
*
25179 TGGTTTCGCAACAAAGGCTTTCTTT-CCACCAATCGTTGTGAAGTCTAAGTTCGTGCCTCAAATG
778 TGGTTTCGCAACAAAGGCTTT-TTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATG
*
25243 AGACAAATATGGATTCTAGTAATGAACTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCT
842 AGACAAATATGGATTCTAGTAATGATCTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCT
* *
25308 CCCCTTTAGGACAAAAGACATTGAAGTTTTTCCTTTT-CCAGGAAAT
907 CCTCTTTAGGACAAAAGACATTGAAGTTTTT-CTTTTGCCTGGAAAT
* *
25354 CTTTTCTTCGCCATATTTTGCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
25419 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* * * *
25484 ACATTGATGCTTTGCTGTCTTAAGAAAATCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTTT
* * * *
25549 GCCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTGAGGCACCA
* *
25614 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
*
25679 CCCACCAATCGTTGTAAAGTCTAAGTTCGT-CCGTCAAATGAGACAAATATGGATTCTAGTAAAG
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGTGCC-TCAAATGAGACAAATATGGATTCTAGTAATG
* *
25743 ATCTTCATTCTTTTTCCGATAAACCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGA
390 ATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGA
* *
25808 AGTTTTTCTTTTGCGTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTT
455 AGTTTTTCTTTTGCCTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTT
25873 GAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACAC
520 GAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACAC
* * * * ****
25938 AATGCCTTTGTTAGGATACCCGACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTTGTATC
585 ATTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTC
* * * *
26003 GTTTTTGATAGAATCAACGTTTGTCTATTAAAGAAGCCGAACATTAATACTCAAACTAATCCTTA
650 GTTTTTAATAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCA
* * * *
26068 TTCCTTTTAGATTGAGGCCCCATAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTG
715 TTCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTG
*
26133 GTTTCGCAATAAAGGCTTTT
780 GTTTCGCAACAAAGGCTTTT
26153 CTTTGCCCTA
Statistics
Matches: 11303, Mismatches: 1521, Indels: 795
0.83 0.11 0.06
Matches are distributed among these distances:
931 3 0.00
932 4 0.00
933 12 0.00
934 7 0.00
935 9 0.00
936 15 0.00
937 11 0.00
938 19 0.00
939 22 0.00
940 28 0.00
941 40 0.00
942 33 0.00
943 7 0.00
944 25 0.00
945 11 0.00
946 19 0.00
947 7 0.00
948 125 0.01
949 686 0.06
950 4877 0.43
951 1752 0.16
952 2713 0.24
953 144 0.01
954 20 0.00
955 1 0.00
956 5 0.00
957 2 0.00
958 7 0.00
959 1 0.00
960 4 0.00
961 8 0.00
962 11 0.00
963 1 0.00
967 5 0.00
968 1 0.00
969 4 0.00
971 10 0.00
972 13 0.00
973 6 0.00
974 4 0.00
975 3 0.00
976 1 0.00
977 6 0.00
978 1 0.00
979 6 0.00
980 4 0.00
981 3 0.00
982 4 0.00
983 10 0.00
984 3 0.00
985 2 0.00
986 3 0.00
987 1 0.00
988 9 0.00
990 6 0.00
991 3 0.00
992 5 0.00
993 17 0.00
994 5 0.00
995 1 0.00
996 7 0.00
997 2 0.00
998 4 0.00
999 1 0.00
1000 2 0.00
1001 1 0.00
1003 3 0.00
1004 9 0.00
1005 5 0.00
1006 4 0.00
1007 9 0.00
1008 5 0.00
1010 1 0.00
1012 3 0.00
1013 1 0.00
1014 21 0.00
1015 18 0.00
1016 23 0.00
1017 19 0.00
1018 80 0.01
1019 9 0.00
1020 5 0.00
1021 22 0.00
1022 32 0.00
1023 36 0.00
1024 51 0.00
1025 38 0.00
1026 31 0.00
1027 15 0.00
1028 8 0.00
1029 9 0.00
1030 20 0.00
1031 24 0.00
1032 11 0.00
1033 5 0.00
1034 4 0.00
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (952 bp):
CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTTT
GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTGAGGCACCA
TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
CCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGA
TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
GTTTTTCTTTTGCCTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTG
AATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACA
TTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCG
TTTTTAATAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCAT
TCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG
TTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC
AAATATGGATTCTAGTAATGATCTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTC
TTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAAT
Found at i:18647 original size:159 final size:157
Alignment explanation
Indices: 570--18647 Score: 2063
Period size: 159 Copynumber: 114.1 Consensus size: 157
560 GCATGGAAAT
* * * * * *
570 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTCT
*
635 CCTAACAGTCTCCTTTCTTTTCAGGATTGGGAAGCCAAAACACATTG-CTAT-TGTTAGGATACC
65 CCTAACAGTCTCCTTTCTTTTCA-GATTGGGAA-CCAAAACACATTGTCT-TCTGTTAGGATACA
*
698 CGACATTGATGCTTTGGTGTCTCATGAAAAG
127 CGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * * * * * * * ** *
729 CTTTTCTTC-ACGTCGTTTTTGATAGAATCAACGTTTGTCTCTTAAATAAG-CTGAACTTTAATA
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGAC--AACATCGATT
* * * * * * * * *
792 CT-CAAACTAATC-CTCATTC-TTTGAGATTTAGGGCACCATAA-ACATAGTTTTCTCATTAGGA
63 CTCCTAAC-AGTCTC-CTTTCTTTTCAGA-TT-GGGAACCAAAACACATTGTCTTCT-GTTAGGA
* * * * * * *
853 TATACGATATTGATGCTATGGT-TCGCTACAAAGG
123 TACACGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * ** * * ** * * * *
887 C-TTT-TTCCCTACCAATCGTT-GT-GAAGTCTAAGTTCGGGCCTCAAATGAGACAATATGGATT
1 CTTTTCTTCGC--CCTATTTTTCATAGAA-TCAAAGTTCGTCCCTTAAATAAGACAACATCGATT
** * * * * ** * * * * *
948 CTAGTAA-TGATCTTCATTCTTTTTCCGATTATGCACTACAAACACATTCTCCTCT-TTAGGACA
63 CTCCTAACAG-TCTCCTTTC-TTTTCAGATTGGGAACCA-AAACACATTGTCTTCTGTTAGGATA
* * * * ** * ** * *
1011 AAAGACATTGAAGTTTTTCT-TTTGCGTGCAAAT
125 CACGACATTGATGCTTTGGTGTCT-CAAGAAAAG
* * * * * *
1044 CTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTCT
* * *
1109 CCTAATAGTCTCCTTTCTTTTCAAGACTGGGAAGCCAAAACACATTG-CTAT-TGTTAGGATACC
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAA-CCAAAACACATTGTCT-TCTGTTAGGATACA
1172 CGACATTGATGCTTTGGTGTCTCAAGAAAAG
127 CGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * * ** * * * ** *
1203 CTTTTCTTCG-CGTCATTTTTAATAGAATCAACGTTTATCTCTTAAATATGCCGAACATTAATAC
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATTC
* * * * * * * * *
1267 T-CAAACTAATC-CTCATTCTTTTTAGATTTAGGCACCATAA-ACATAGTCTTCTCATTAGGATA
64 TCCTAAC-AGTCTC-CTTTCTTTTCAGA-TTGGGAACCAAAACACATTGTCTTCT-GTTAGGATA
* * * * *
1329 CACGATATTGATGCTTTGGTTTCGCAACAAAGG
125 CACGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * ** * * * * * * *
1362 C-TTTCTTCCCACCAATCGTT-GT-GAAGTCTAAGTTCGTGCCTCAAATGAGACAATATGGATTC
1 CTTTTCTTCGC-CCTATTTTTCATAGAA-TCAAAGTTCGTCCCTTAAATAAGACAACATCGATTC
** * * * * ** * * * * * *
1424 TAGTAA-TGATCTTCATTCTTTTTCCGATAAAGG-ACTACAAACACGTTCTCCTCT-TGAGGACA
64 TCCTAACAG-TCTCCTTTC-TTTTCAGAT-TGGGAACCA-AAACACATTGTCTTCTGTTAGGATA
* * * * ** * ** * *
1486 AAAGACATTGAAGTTTTTCT-TTTGCGTGGAAAT
125 CACGACATTGATGCTTTGGTGTCT-CAAGAAAAG
* * * * * *
1519 C-TTTCGTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTC
1 CTTTTC-TTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTC
* * * *
1583 TCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCTAAAACACATTGCCAT-TGTTAGGATACC
64 TCCTAACAGTCTCCTTTCTTTTC-AGATTGGGAA-CCAAAACACATTGTCTTCTGTTAGGATACA
1647 CGACATTGATGCTTTGGTGTCTCAAGAAAAG
127 CGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * * * ** ** * * ** *
1678 CTTTTCTTC-ACGTCATTTTTAATAGAATCAACGTTTATCTTTTAAATATGCCGAACATTAATAC
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATTC
* * * * * * * * *
1742 T-CAAACTAATC-CTCATTCTTTTTAGATTTAGGCACCATAA-ACATAGTCTTCTCATTAGGATA
64 TCCTAAC-AGTCTC-CTTTCTTTTCAGA-TTGGGAACCAAAACACATTGTCTTCT-GTTAGGATA
* * * * * *
1804 CACGATATTCATGCTTTGGTTTCACAACAAAGG
125 CACGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * ** * * * * * * * *
1837 C-TTTCTTCCCACCAATCGTT-GT-GAAGTCTAAGTTCGTGCCTCAAATGAGACCATATGGATTC
1 CTTTTCTTCGC-CCTATTTTTCATAGAA-TCAAAGTTCGTCCCTTAAATAAGACAACATCGATTC
** * * * * ** * * * * * *
1899 TAGTAA-TGATCTTCATTCTTTTTCCGATAAAGG-ACTACAAACACGTTCTCCTCT-TGAGGACA
64 TCCTAACAG-TCTCCTTTC-TTTTCAGAT-TGGGAACCA-AAACACATTGTCTTCTGTTAGGATA
* * * * ** * ** * *
1961 AAAGACATTGAAGTTTTTCT-TTTGCGTGGAAAT
125 CACGACATTGATGCTTTGGTGTCT-CAAGAAAAG
* * * * * * *
1994 CTTTCCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTCT
* *
2059 CCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTG-CTAT-TGTTAGGATACC
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAA-CCAAAACACATTGTCT-TCTGTTAGGATACA
2122 CGACATTGATGCTTTGGTGTCTCAAGAAAAG
127 CGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * * * ** ** * * ** *
2153 CTTTTCTTC-ACGTCATTTTTAATAGAATCAACGTTTATCTTTTAAATATGCCGAACATTAATAC
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATTC
* * * * * * * * *
2217 T-CAAACTAATC-CTCATTCTTTTTAGATTTAGGCACCATAA-ACATAGTCTTCTCATTAGGATA
64 TCCTAAC-AGTCTC-CTTTCTTTTCAGA-TTGGGAACCAAAACACATTGTCTTCT-GTTAGGATA
* * * * *
2279 CACGATATTGATGCTTTGGTTTCGCAACAAAGG
125 CACGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * ** * * * * * * *
2312 C-TTTCTTCCCACCAATCGTT-GT-GAAGTCTAAGTTCGTGCCTCAAATGAGACAATATGGATTC
1 CTTTTCTTCGC-CCTATTTTTCATAGAA-TCAAAGTTCGTCCCTTAAATAAGACAACATCGATTC
** * * * * ** * * * * * *
2374 TAGTAA-TGATCTTCATTCTTTTTCCGATAAAGG-ACTACAAACACGTTCTCCTCT-TGAGGACA
64 TCCTAACAG-TCTCCTTTC-TTTTCAGAT-TGGGAACCA-AAACACATTGTCTTCTGTTAGGATA
* * * * ** * ** * *
2436 AAAGACATTGAAGTTTTTCT-TTTGCGTGGAAAT
125 CACGACATTGATGCTTTGGTGTCT-CAAGAAAAG
* * * * * *
2469 C-TTTCGTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTC
1 CTTTTC-TTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTC
* * * * *
2533 TCCTAACAGTCTCCTTTCCTTTCAAGATTGGGAAGCTAAAACACATTGCCAT-TGTTAGGATACC
64 TCCTAACAGTCTCCTTTCTTTTC-AGATTGGGAA-CCAAAACACATTGTCTTCTGTTAGGATACA
2597 CGACATTGATGCTTTGGTGTCTCAAGAAAAG
127 CGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * * * ** ** * * ** *
2628 CTTTTCTTC-ACGTCATTTTTAATAGAATCAACGTTTATCTTTTAAATATGCCGAACATTAATAC
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATTC
* * * * * * * * *
2692 T-CAAACTAATC-CTCATTCTTTTTAGATTTAGGCACCATAA-ACATAGTCTTCTCATTAGGATA
64 TCCTAAC-AGTCTC-CTTTCTTTTCAGA-TTGGGAACCAAAACACATTGTCTTCT-GTTAGGATA
* * * * * *
2754 CACGATATTCATGCTTTGGTTTCACAACAAAGG
125 CACGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * ** * * * * * * * *
2787 CTTTTCTTCCCACCAATCGTT-GT-GAAGTCTAAGTTCGTGCCTCAAATGAGACCATATGGATTC
1 CTTTTCTTCGC-CCTATTTTTCATAGAA-TCAAAGTTCGTCCCTTAAATAAGACAACATCGATTC
** * * * * ** * * * * * *
2850 TAGTAA-TGATCTTCATTCTTTTTCCGATAAAGG-ACTACAAACACGTTCTCCTCT-TGAGGACA
64 TCCTAACAG-TCTCCTTTC-TTTTCAGAT-TGGGAACCA-AAACACATTGTCTTCTGTTAGGATA
* * * * ** * ** * *
2912 AAAGACATTGAAGTTTTTCT-TTTGCGTGGAAAT
125 CACGACATTGATGCTTTGGTGTCT-CAAGAAAAG
* * * * * * *
2945 CTTTCCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTCT
* *
3010 CCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTG-CTAT-TGTTAGGATACC
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAA-CCAAAACACATTGTCT-TCTGTTAGGATACA
3073 CGACATTGATGCTTTGGTGTCTCAAGAAAAG
127 CGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * * * ** ** * * ** *
3104 CTTTTCTTC-ACGTCATTTTTAATAGAATCAACGTTTATCTTTTAAATATGCCGAACATTAATAC
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATTC
* * * * * * * *
3168 T-CAAACTAATC-CTCATTCTTTT-AGATTTAGGCACCATAA-ACATAGTCTTCTCATTAGGATA
64 TCCTAAC-AGTCTC-CTTTCTTTTCAGA-TTGGGAACCAAAACACATTGTCTTCT-GTTAGGATA
* * * * *
3229 CACGATATTGATGCTTTGGTTTCGCAACAAAGG
125 CACGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * ** * * * * * * *
3262 C-TTTCTTCCCACCAATCGTT-GT-GAAGTCTAAGTTCGTGCCTCAAATGAGACAATATGGATTC
1 CTTTTCTTCGC-CCTATTTTTCATAGAA-TCAAAGTTCGTCCCTTAAATAAGACAACATCGATTC
** * * * * ** * * * * *
3324 TAGTAA-TGATCTTCATTCTTTTTCCGATAAAGG-ACTACAAACACGTTCTCCTCT-TTAGGACA
64 TCCTAACAG-TCTCCTTTC-TTTTCAGAT-TGGGAACCA-AAACACATTGTCTTCTGTTAGGATA
* * * * * ** * * * *
3386 AAAGACATTCAAGTTTTTCT-TTTGCATGGAAAT
125 CACGACATTGATGCTTTGGTGTCT-CAAGAAAAG
* * * * * * *
3419 ATTTTCGTCGCCCTATTTTTCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTCT
* * * *
3484 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCTAAAACACATTGCCAT-TGTTAGGATACCC
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAA-CCAAAACACATTGTCTTCTGTTAGGATACAC
*
3548 GACATTGATGCTTTGGTGTCT-TAGAAAAAG
128 GACATTGATGCTTTGGTGTCTCAAG-AAAAG
* * * * * ** ** * ** *
3578 CTTTTCTTC-ACGTCGTTTTTAATAGAATCAACGTTTATCTTTTAAATAAGCCGAACATTAATAC
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATTC
* * * * * * * *
3642 T-CAAACTAATC-CTCATTCTTCTT-AGATTTAGGCACCATAA-ACATAGTCTTCTCATTAGGAT
64 TCCTAAC-AGTCTC-CTTTCTT-TTCAGA-TTGGGAACCAAAACACATTGTCTTCT-GTTAGGAT
* * * * *
3703 ACACGATATTGATGCTTTGGTTTCGCAACAAAGG
124 ACACGACATTGATGCTTTGGTGTCTCAAGAAAAG
* ** * * * * * * *
3737 C-TTTCTTTC-CACCAATCATT-GT-GAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGAT
1 CTTTTC-TTCGC-CCTATTTTTCATAGAA-TCAAAGTTCGTCCCTTAAATAAGAC-AACATCGAT
** * * * * * *** * * * ** *
3798 TCTAGTAA-TGAACTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCCCT-TTAGGAC
62 TCTCCTAACAG-TCTCCTTTCTTTT-CAGATTGGGAACCA-AAACACATTGTCTTCTGTTAGGAT
* * * * ** * ** * *
3861 AAAAGACATTGAAGTTTTTCCT-TTTCCTGGAAAT
124 ACACGACATTGATG-CTTTGGTGTCTCAAGAAAAG
* * * * * * *
3895 CTTTTCTTCGCCATATTTTGCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTCT
* *
3960 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTT-TGTTAGGATACCC
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAA-CCAAAACACATTGTCTTCTGTTAGGATACAC
* *
4024 GACATTGATGCTTTGCTGTCTTAAGAAAAG
128 GACATTGATGCTTTGGTGTCTCAAGAAAAG
* * * * * ** * ** *
4054 CTTTTCTTCG-CATCGTTTTTGATAGAATCAACGTTTGTCTATTAAATAAGCCGAACATTAATAC
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATTC
* * * ** * * * *
4118 T-CAAACTAATC-CTTATTCCTTTT-AGATTGAGGCCCCATAA-ATATAGTCTTCTCATTAGGAT
64 TCCTAAC-AGTCTCCT-TT-CTTTTCAGATTG-GGAACCAAAACACATTGTCTTCT-GTTAGGAT
* * * * *
4179 ACACGATATTGATGCTTTGGTTTCGCAATAAAGG
124 ACACGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * ** * * * * * * *
4213 CTTTT-TTCCCACCAATCATT-GTA-AAGTCTAAGTTCGTCCGTCAAATGAGACAAATATGGATT
1 CTTTTCTTCGC-CCTATTTTTCATAGAA-TCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATT
** * * * ***** * * * * *
4275 CTAGTAA-AGATCTTCATTCTTTTTCCGATAAACCACTACAAACATATTCTCCTCT-TTAGGACA
63 CTCCTAACAG-TCTCCTTTC-TTTTCAGATTGGGAACCA-AAACACATTGTCTTCTGTTAGGATA
* * * * ** * *** * *
4338 AAAGACATTGAAGTTTTTCT-TTTGTGTGGAAAT
125 CACGACATTGATGCTTTGGTGTCT-CAAGAAAAG
* * * * ** *
4371 CTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTTATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTCT
* * *
4436 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTT-TGTTAGGATACCC
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAA-CCAAAACACATTGTCTTCTGTTAGGATACAC
* *
4500 GACATTGATGCTTTGCTGTCTTAAGAAAAG
128 GACATTGATGCTTTGGTGTCTCAAGAAAAG
* ** * * * * ** * * ** *
4530 CTTTTCTTTG-TATCGTTTTTGATAGAATCAACGTTTGTCTATTAAAGAAGCCGAACATTAATAC
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATTC
* * * ** * * * *
4594 T-CAAACTAATC-CTTATTCCTTTT-AGATTGAGGCCCCATAA-ATATAGTCTTCTCATTAGGAT
64 TCCTAAC-AGTCTCCT-TT-CTTTTCAGATTG-GGAACCAAAACACATTGTCTTCT-GTTAGGAT
* * * * *
4655 ACACGATATTGATGCTTTGGTTTCGCAATAAAGG
124 ACACGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * * * * * * *
4689 CTTTTTTTTGCCCTATTTTTCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTCT
* * *
4754 CCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTT-TGTTAGGATACCC
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAA-CCAAAACACATTGTCTTCTGTTAGGATACAC
* *
4818 GACATTGATGGTTTGGTGCCTCAAGAAAAG
128 GACATTGATGCTTTGGTGTCTCAAGAAAAG
* * * * * * ** *
4848 CTTTTCTTCG-CGTCATTTTTGATAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATAC
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATTC
* * * * * * * * * *
4912 T-CAAACTAATCCTCATTCCATTT-AGATTTAGGCACCATAA-ACATAGTCTTCTCATTAGGATA
64 TCCTAAC-AGT-CTCCTTTCTTTTCAGA-TTGGGAACCAAAACACATTGTCTTCT-GTTAGGATA
* * *
4974 CACGATATTGATGCTTTGGT-T-TGCAACAAAGG
125 CACGACATTGATGCTTTGGTGTCT-CAAGAAAAG
* * ** * * ** * * * *
5006 C-TTTCTTCCCACCAATCGTT-GT-GAAGTCTAAGTTCGGGCCTCAAATGAGACAATATGGATTC
1 CTTTTCTTCGC-CCTATTTTTCATAGAA-TCAAAGTTCGTCCCTTAAATAAGACAACATCGATTC
** * * * * *** * * * * * *
5068 TAGTAA-TGATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCT-TTAGGACAA
64 TCCTAACAG-TCTCCTTTC-TTTTCAGATTGGGAACCA-AAACACATTGTCTTCTGTTAGGATAC
* * * * * ** * ** * *
5131 AAGTCATTCAAGTTTTTCT-TTTGCCTGGAAAT
126 ACGACATTGATGCTTTGGTGTCT-CAAGAAAAG
* * * * * * *
5163 CTTTTCTTCGCCCTATTTTTCTTAAAATTAATGTTCATCCTTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTCT
* * * *
5228 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCTAAAACACATTGCCAT-TGTTAGGATACCC
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAA-CCAAAACACATTGTCTTCTGTTAGGATACAC
5292 GACATTGATGCTTTGGTGTCTCAAGAAAAG
128 GACATTGATGCTTTGGTGTCTCAAGAAAAG
* * * * * * * * * ** *
5322 CTTTTCTTC-ACGTCGTTTTTAATAGAATCAACA-TTTGTCTCTTAAATATGCCGAACGTTAATA
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAA-AGTTCGTCCCTTAAATAAGAC-AACATCGATT
* * * * * * * * * *
5385 CT-CAAACTAATC-CTCATTCTTTTTAGATTTAGGCACCATAA-ACGTAGTCTTCTCATTAGGAT
63 CTCCTAAC-AGTCTC-CTTTCTTTTCAGA-TTGGGAACCAAAACACATTGTCTTCT-GTTAGGAT
* * *
5447 ACACGATATTGATGCTTTGGTTTCGT-AACAAAAG
124 ACACGACATTGATGCTTTGGTGTC-TCAAGAAAAG
* * * ** * * * * * *
5481 ATTTT-TTC-CCACCAATCGT-AGTA-AAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGAT
1 CTTTTCTTCGCC-CTATTTTTCA-TAGAA-TCAAAGTTCGTCCCTTAAATAAGAC-AACATCGAT
** * * * * * *** * * * ** *
5542 TCTGGTAA-TGAACTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCCCT-TTAGGAC
62 TCTCCTAACAG-TCTCCTTTCTTTT-CAGATTGGGAACCA-AAACACATTGTCTTCTGTTAGGAT
* * * * ** * ** * *
5605 AAAAGACATTGAAGTTTTTCCT-TTTCCTGGAAAT
124 ACACGACATTGATG-CTTTGGTGTCTCAAGAAAAG
* * * * * * * *
5639 CTTTTCTTCGCCATATTTTGCTTAAAATGAAAGTTCATCCTTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTCT
* *
5704 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTT-TGTTAGGATACCC
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAA-CCAAAACACATTGTCTTCTGTTAGGATACAC
* *
5768 GACATTGATGCTTTGCTGTCTTAAGAAAAG
128 GACATTGATGCTTTGGTGTCTCAAGAAAAG
* * * * * ** * ** *
5798 CTTTTCTTCG-CATCGTTTTTGATAGAATCAACGTTTGTCTATTAAATAAGCCGAACATTAATAC
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATTC
* * * ** * * * *
5862 T-CAAACTAATC-CTTATTCCTTTT-AGATTGAGGCCCCATAA-ATATAGTCTTCTTATTAGGAT
64 TCCTAAC-AGTCTCCT-TT-CTTTTCAGATTG-GGAACCAAAACACATTGTCTTC-TGTTAGGAT
* * * * *
5923 ACACGATATTGATGCTTTGGTTTCGCAATAAAGG
124 ACACGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * ** * * * * * * *
5957 CTTTT-TTCCCACCAATCGTT-GTA-AAGTCTAAGTTCGTGCGTTAAATGAGACAAATATGGATT
1 CTTTTCTTCGC-CCTATTTTTCATAGAA-TCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATT
** * * * * * * * * *
6019 CTAGTAA-TGATCTTCATTCTTTTTCTG-GTGAAGCACTACAAACACATTCTGC-TCT-TTAGGA
63 CTCCTAACAG-TCTCCTTTC-TTTTCAGATTG-GGAACCA-AAACACATTGT-CTTCTGTTAGGA
* * * * * ** * ** * *
6080 AAAAAGACATTGAAGTTTTTCT-TTTGCTTGGAAAT
123 TACACGACATTGATGCTTTGGTGTCT-CAAGAAAAG
* * * * * * ** *
6115 CTTTTCTTCGCCCTATTTTCCTTAAAATTAATGTTCATCAGTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTCT
* * * * *
6180 CCTAACAGTCTCCTTTCTTTTTAAGATTGGGAAGCTAAAACACATTGCCAT-TGTTAGGATACCC
65 CCTAACAGTCTCCTTTC-TTTTCAGATTGGGAA-CCAAAACACATTGTCTTCTGTTAGGATACAC
** *
6244 GACATTGATTATTTGGTGTCTCACGAAAAG
128 GACATTGATGCTTTGGTGTCTCAAGAAAAG
* * * * * * * * * ** **
6274 CTTTTCTTCG-CGTCATTATTAATAGAATCAACGTTTGTCTCTAAAATATGCCGAACATTAAAAC
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATTC
* * * * ** * * * * * *
6338 T-CAAACTAATC-CTCATTCTTTTTAGATTTACGCACCATAA-ACATAGTATTCTCATTAGCATA
64 TCCTAAC-AGTCTC-CTTTCTTTTCAGA-TTGGGAACCAAAACACATTGTCTTCT-GTTAGGATA
* * * *
6400 CACGATATTGATGCTTTGGT-TCACAACAAAGG
125 CACGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * ** * * ** * * * *
6432 C-TTTCTTCCCACCAATCGTT-GT-GAAGTCTAAGTTCGGGCCTCAAATGAGACAATATGGATTC
1 CTTTTCTTCGC-CCTATTTTTCATAGAA-TCAAAGTTCGTCCCTTAAATAAGACAACATCGATTC
** * * * * ** * * * * * *
6494 TAGTAA-TGATCTTCATTCTTTTTCCGATAAAGG-ACTACAAACACGTTCTCCTCT-TGAGGACA
64 TCCTAACAG-TCTCCTTTC-TTTTCAGAT-TGGGAACCA-AAACACATTGTCTTCTGTTAGGATA
* * * * ** * ** * *
6556 AAAGACATTGAAGTTTTTCT-TTTGCGTGGAAAT
125 CACGACATTGATGCTTTGGTGTCT-CAAGAAAAG
* * * * * * *
6589 CTTTCCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTCT
* *
6654 CCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTG-CTAT-TGTTAGGATACC
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAA-CCAAAACACATTGTCT-TCTGTTAGGATACA
*
6717 CGACATTGATGCTTTGGCGTCTCAAGAAAAG
127 CGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * * * ** ** * * ** *
6748 CTTTTCTTC-ACGTCATTTTTAATAGAATCAACGTTTATCTTTTAAATATGCCGAACATTAATAC
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATTC
* * * * * * * *
6812 T-CAAACTAATC-CTCATTCTTTT-AGATTTAGGCACCATAA-ACATAGTCTTCTCATTAGGATA
64 TCCTAAC-AGTCTC-CTTTCTTTTCAGA-TTGGGAACCAAAACACATTGTCTTCT-GTTAGGATA
* * * * *
6873 CACGATATTGATGCTTTGGTTTCGCAACAAAGG
125 CACGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * ** * * * * * * *
6906 C-TTTCTTCCCACCAATCGTT-GT-GAAGTCTAAGTTCGTGCCTCAAATGAGACAATATGGATTC
1 CTTTTCTTCGC-CCTATTTTTCATAGAA-TCAAAGTTCGTCCCTTAAATAAGACAACATCGATTC
** * * * * ** * * * * *
6968 TAGTAA-TGATCTTCATTCTTTTTCCGATAAAGG-ACTACAAACACGTTCTCCTCT-TTAGGACA
64 TCCTAACAG-TCTCCTTTC-TTTTCAGAT-TGGGAACCA-AAACACATTGTCTTCTGTTAGGATA
* * * * * ** * * * *
7030 AAAGACATTCAAGTTTTTCT-TTTGCATGGAAAT
125 CACGACATTGATGCTTTGGTGTCT-CAAGAAAAG
* * * * * * *
7063 ATTTTCGTCGCCCTATTTTTCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTCT
* * * *
7128 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCTAAAACACATTGCCAT-TGTTAGGATACCC
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAA-CCAAAACACATTGTCTTCTGTTAGGATACAC
*
7192 GACATTGATGCTTTGGTGTCT-TAGAAAAAG
128 GACATTGATGCTTTGGTGTCTCAAG-AAAAG
* * * * * ** ** * ** *
7222 CTTTTCTTC-ACGTCGTTTTTAATAGAATCAACGTTTATCTTTTAAATAAGCCGAACATTAATAC
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATTC
* * * * * * * *
7286 T-CAAACTAATC-CTCATTCTTCTT-AGATTTAGGCACCATAA-ACATAGTCTTCTCATTAGGAT
64 TCCTAAC-AGTCTC-CTTTCTT-TTCAGA-TTGGGAACCAAAACACATTGTCTTCT-GTTAGGAT
* * * * *
7347 ACACGATATTGATGCTTTGGTTTCGCAACAAAGG
124 ACACGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * ** * * * * * * *
7381 C-TTTCTTCCCACCAATCGTT-GT-GAAGTCTAAGTTCGTGCCTCAAATGAGACAATATGGATTC
1 CTTTTCTTCGC-CCTATTTTTCATAGAA-TCAAAGTTCGTCCCTTAAATAAGACAACATCGATTC
** * ** * *** * * * *
7443 TAGTAA-TGATCTTGATTCTTTTTTC-GATAAAGCACTACAAACACATTCTCCTT-T-TTAGGAC
64 TCCTAACAG-TC-TCCTT-TCTTTTCAGATTGGGAACCA-AAACACATTGT-CTTCTGTTAGGAT
* * * * ** * ** * *
7504 AAAAGACATTGAAGTTTTTCT-TTTGCCTGGAAAT
124 ACACGACATTGATGCTTTGGTGTCT-CAAGAAAAG
* * * * * * *
7538 CTTTTCTTCGCCCTATTTTTCTTAAAATGAAAGTTCATCCCTTGAACAAGACAAGCATCAATTCT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTCT
* * * *
7603 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCTAAAACACATTGCCAT-TGTTAGGATACCC
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAA-CCAAAACACATTGTCTTCTGTTAGGATACAC
7667 GACATTGATGCTTTGGTGTCTC-AGAAAAAG
128 GACATTGATGCTTTGGTGTCTCAAG-AAAAG
* * * * * * * * * * ** *
7697 CTTTTCTTC-ACGTCGTTTTTAATAGAATCAACGTTTGTCTCTTAAATATGCCGAACGTTAATAC
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATTC
* * * * * * * * *
7761 T-CAAACTAATC-CTCATTCTTTTTAGATTTAGGCACCATAA-ACATAGTCTTCTCATTAGGATA
64 TCCTAAC-AGTCTC-CTTTCTTTTCAGA-TTGGGAACCAAAACACATTGTCTTCT-GTTAGGATA
* * * * *
7823 CACGATATTGATGCTTTGGTTTCGCAACAAAGG
125 CACGACATTGATGCTTTGGTGTCTCAAGAAAAG
* ** * * * * * * *
7856 C-TTTCTTTC-CACCAATCGTT-GT-GAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGAT
1 CTTTTC-TTCGC-CCTATTTTTCATAGAA-TCAAAGTTCGTCCCTTAAATAAGAC-AACATCGAT
** * * * * * *** * * * ** *
7917 TCTAGTAA-TGAACTTCATTCTTTTCCTGATAAAGCACTACAAACACATTCTCCCCT-TTAGGAC
62 TCTCCTAACAG-TCTCCTTTCTTTT-CAGATTGGGAACCA-AAACACATTGTCTTCTGTTAGGAT
* * * * ** * * * *
7980 AAAAGACATTGAAGTTTTTCCT-TTTCCAGGAAAT
124 ACACGACATTGATG-CTTTGGTGTCTCAAGAAAAG
* * * * * * *
8014 CTTTTCTTCGCCATATTTTGCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTCT
* *
8079 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTT-TGTTAGGATACCC
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAA-CCAAAACACATTGTCTTCTGTTAGGATACAC
* *
8143 GACATTGATGCTTTGCTGTCTTAAGAAAAG
128 GACATTGATGCTTTGGTGTCTCAAGAAAAG
* * * * * ** * ** *
8173 CTTTTCTTCG-CATCGTTTTTGATAGAATCAACGTTTGTCTATTAAATAAGCCGAACATTAATAC
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATTC
* * * ** * * * *
8237 T-CAAACTAATC-CTTATTCCTTTT-AGATTGAGGCCCCATAA-ATATAGTCTTCTCATTAGGAT
64 TCCTAAC-AGTCTCCT-TT-CTTTTCAGATTG-GGAACCAAAACACATTGTCTTCT-GTTAGGAT
* * * * *
8298 ACACGATATTGATGCTTTGGTTTCGCAATAAAGG
124 ACACGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * ** * * * * * * *
8332 CTTTT-TTCCCACCAATCGTT-GTA-AAGTCTAAGTTCGTCCGTCAAATGAGACAAATATGGATT
1 CTTTTCTTCGC-CCTATTTTTCATAGAA-TCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATT
** * * * ***** * * * * *
8394 CTAGTAA-AGATCTTCATTCTTTTTCCGATAAACCACTACAAACATATTCTCCTCT-TTAGGACA
63 CTCCTAACAG-TCTCCTTTC-TTTTCAGATTGGGAACCA-AAACACATTGTCTTCTGTTAGGATA
* * * * ** * ** * *
8457 AAAGACATTGAAGTTTTTCT-TTTGCGTGGAAAT
125 CACGACATTGATGCTTTGGTGTCT-CAAGAAAAG
* * * * * *
8490 CTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTCT
* * *
8555 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTT-TGTTAGGATACCC
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAA-CCAAAACACATTGTCTTCTGTTAGGATACAC
* *
8619 GACATTGATGCTTTGCTGTCTTAAGAAAAG
128 GACATTGATGCTTTGGTGTCTCAAGAAAAG
* ** * * * * ** * * ** *
8649 CTTTTCTTTG-TATCGTTTTTGATAGAATCAACGTTTGTCTATTAAAGAAGCCGAACATTAATAC
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATTC
* * * ** * * * *
8713 T-CAAACTAATC-CTTATTCCTTTT-AGATTGAGGCCCCATAA-ATATAGTCTTCTCATTAGGAT
64 TCCTAAC-AGTCTCCT-TT-CTTTTCAGATTG-GGAACCAAAACACATTGTCTTCT-GTTAGGAT
* * * * *
8774 ACACGATATTGATGCTTTGGTTTCGCAATAAAGG
124 ACACGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * * * * *
8808 CTTTTCTTTGCCCTATTTTTCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTCT
* * *
8873 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTT-TGTTAGGATACCC
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAA-CCAAAACACATTGTCTTCTGTTAGGATACAC
* *
8937 GACATTGATGCTTTGCTGTCTTAAGAAAAG
128 GACATTGATGCTTTGGTGTCTCAAGAAAAG
* ** * * * * ** * ** *
8967 CTTTTCTTTG-TATCGTTTTTGATAGAATCAACGTTTGTCTATTAAATAAGCCGAACATTAATAC
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATTC
* * * ** * * * *
9031 T-CAAACTAATC-CTTATTCCTTTT-AGATTGAGGCCCCATAA-ATATAGTCTTCTCATTAGGAT
64 TCCTAAC-AGTCTCCT-TT-CTTTTCAGATTG-GGAACCAAAACACATTGTCTTCT-GTTAGGAT
* * * * *
9092 ACACGATATTGATGCTTTGGTTTCGCAATAAAGG
124 ACACGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * ** * * * * * * *
9126 CTTTT-TTCCCACCAATCGTT-GTA-AAGTCTAAGTTCGTCCGTCAAATGAGACAAATATGGATT
1 CTTTTCTTCGC-CCTATTTTTCATAGAA-TCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATT
** * * * ***** * * * * *
9188 CTAGTAA-AGATCTTCATTCTTTTTCCGATAAACCACTACAAACATATTCTCCTCT-TTAGGACA
63 CTCCTAACAG-TCTCCTTTC-TTTTCAGATTGGGAACCA-AAACACATTGTCTTCTGTTAGGATA
* * * * ** * ** * *
9251 AAAGACATTGAAGTTTTTCT-TTTGCGTGGAAAT
125 CACGACATTGATGCTTTGGTGTCT-CAAGAAAAG
* * * * * *
9284 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTCT
* *
9349 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTT-TGTTAGGATACCC
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAA-CCAAAACACATTGTCTTCTGTTAGGATACAC
* *
9413 GACATTGATGCTTTGCTGTCTTAAGAAAAG
128 GACATTGATGCTTTGGTGTCTCAAGAAAAG
* * * * * ** * ** *
9443 CTTTTCTTCG-CATCGTTTTTGATAGAATCAACGTTTGTCTATTAAATAAGCCGAACATTAATAC
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATTC
* * * ** * * * *
9507 T-CAAACTAATC-CTTATTCCTTTT-AGATTGAGGCCCCATAA-ATATAGTCTTCTCATTAGGAT
64 TCCTAAC-AGTCTCCT-TT-CTTTTCAGATTG-GGAACCAAAACACATTGTCTTCT-GTTAGGAT
* * * * *
9568 ACACGATATTGATGCTTTGGTTTCGCAATAAAGG
124 ACACGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * ** * * * * * * *
9602 CTTTT-TTCCCACCAATCGTT-GTA-AAGTCTAAGTTCGTCCGTCAAATGAGACAAATATGGATT
1 CTTTTCTTCGC-CCTATTTTTCATAGAA-TCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATT
** * * * ***** * * * * *
9664 CTAGTAA-AGATCTTCATTCTTTTTCCGATAAACCACTACAAACATATTCTCCTCT-TTAGGACA
63 CTCCTAACAG-TCTCCTTTC-TTTTCAGATTGGGAACCA-AAACACATTGTCTTCTGTTAGGATA
* * * * ** * ** * *
9727 AAAGACATTGAAGTTTTTCT-TTTGCGTGGAAAT
125 CACGACATTGATGCTTTGGTGTCT-CAAGAAAAG
* * * * * * *
9760 CTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTCT
* * *
9825 CCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTT-TGTTAGGATACCC
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAA-CCAAAACACATTGTCTTCTGTTAGGATACAC
* *
9889 GACATTGATGGTTTGGTGCCTCAAGAAAAG
128 GACATTGATGCTTTGGTGTCTCAAGAAAAG
* * * * * * ** *
9919 CTTTTCTTCG-CGTCATTTTTGATAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATAC
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATTC
* * * * * * * * * *
9983 T-CAAACTAATCCTCATTCCATTT-AGATTTAGGCACCATAA-ACATAGTCTTCTCATTAGGATA
64 TCCTAAC-AGT-CTCCTTTCTTTTCAGA-TTGGGAACCAAAACACATTGTCTTCT-GTTAGGATA
* * *
10045 CACGATATTGATGCTTTGGT-T-TGCAACAAAGG
125 CACGACATTGATGCTTTGGTGTCT-CAAGAAAAG
* * ** * * ** * * * *
10077 C-TTTCTTCCCACCAATCGTT-GT-GAAGTCTAAGTTCGGGCCTCAAATGAGACAATATGGATTC
1 CTTTTCTTCGC-CCTATTTTTCATAGAA-TCAAAGTTCGTCCCTTAAATAAGACAACATCGATTC
** * * * * *** * * * * * *
10139 TAGTAA-TGATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCT-TTAGGACAA
64 TCCTAACAG-TCTCCTTTC-TTTTCAGATTGGGAACCA-AAACACATTGTCTTCTGTTAGGATAC
* * * * * ** * ** * *
10202 AAGTCATTCAAGTTTTTCT-TTTGCCTGGAAAT
126 ACGACATTGATGCTTTGGTGTCT-CAAGAAAAG
* * * * * * *
10234 CTTTTCTTCGCCCTATTTTTCTTAAAATTAATGTTCATCCTTTGAATAAGACAACCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTCT
* * * * *
10299 CCTAATAGTCTCCTTTCTTTTCAAGATTGGGAAGCTAAAACACATTGCCAT-TGTTAGGATACCC
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAA-CCAAAACACATTGTCTTCTGTTAGGATACAC
10363 GACATTGATGCTTTGGTGTCTCAAGAAAAG
128 GACATTGATGCTTTGGTGTCTCAAGAAAAG
* * * * * * * * ** *
10393 CTTTTCTTC-ACGTCGTTTTTAATAGAATCAACA-TTTGTCTCTTAAATATGCCGAACATTAATA
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAA-AGTTCGTCCCTTAAATAAGAC-AACATCGATT
* * * * * * * *
10456 CT-CAAACTAATC-CTCATTCTTCTT-AGATTTAGGCACCATAA-ACATAGTCTTCTCATTAGGA
63 CTCCTAAC-AGTCTC-CTTTCTT-TTCAGA-TTGGGAACCAAAACACATTGTCTTCT-GTTAGGA
* * * * * *
10517 TACACGATATTCATGCTTTGGTTTCGCAACAAAGG
123 TACACGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * ** * * * * * * * *
10552 C-TTTCTTCCCACCAATCGTT-GT-GAAGTCTATGTTCGTGCCTCAAATGAGACAAATATGGATT
1 CTTTTCTTCGC-CCTATTTTTCATAGAA-TCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATT
** * ** * *** * * *
10614 CTAGTAA-TGATCTTGATTCTTTTTTC-GATAAAGCACTACAAACACATTCTCCTT-T-TTAGGA
63 CTCCTAACAG-TC-TCCTT-TCTTTTCAGATTGGGAACCA-AAACACATTGT-CTTCTGTTAGGA
* * * * * ** * ** * *
10675 CAAAAGACATTGAAGTTTTTCT-TTTGCCTGGAAAT
123 TACACGACATTGATGCTTTGGTGTCT-CAAGAAAAG
* * ** * * * *
10710 CTTTTCTTCGCCCTATTTTTCTTAAAATGGAAGTTCATCCCTTGAACAAGACAAGCATCAATTCT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTCT
* * * *
10775 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCTAAAACACATTGCCAT-TGTTAGGATACCC
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAA-CCAAAACACATTGTCTTCTGTTAGGATACAC
10839 GACATTGATGCTTTGGTGTCTC-AGAAAAAG
128 GACATTGATGCTTTGGTGTCTCAAG-AAAAG
* * * * * * * * * * ** *
10869 CTTTTCTTC-ACGTCGTTTTTAATAGAATCAACGTTTGTCTCTTAAATATGCCGAACGTTAATAC
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATTC
* * * * * * * * *
10933 T-CAAACTAATC-CTCATTCTTTTTAGATTTAGGCACCATAA-ACATAGTCTTCTCATTAGGATA
64 TCCTAAC-AGTCTC-CTTTCTTTTCAGA-TTGGGAACCAAAACACATTGTCTTCT-GTTAGGATA
* * * * *
10995 CACGATATTGATGCTTTGGTTTCGCAACAAAGG
125 CACGACATTGATGCTTTGGTGTCTCAAGAAAAG
* ** * * * * * * *
11028 C-TTTCTTTC-CACCAATCGTT-GT-GAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGAT
1 CTTTTC-TTCGC-CCTATTTTTCATAGAA-TCAAAGTTCGTCCCTTAAATAAGAC-AACATCGAT
** * * * * * *** * * * ** *
11089 TCTAGTAA-TGAACTTCATTCTTTTCCTGATAAAGCACTACAAACACATTCTCCCCT-TTAGGAC
62 TCTCCTAACAG-TCTCCTTTCTTTT-CAGATTGGGAACCA-AAACACATTGTCTTCTGTTAGGAT
* * * * ** * * * *
11152 AAAAGACATTGAAGTTTTTCCT-TTTCCAGGAAAT
124 ACACGACATTGATG-CTTTGGTGTCTCAAGAAAAG
* * * * * * *
11186 CTTTTCTTCGCCATATTTTGCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTCT
* *
11251 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTT-TGTTAGGATACCC
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAA-CCAAAACACATTGTCTTCTGTTAGGATACAC
* *
11315 GACATTGATGCTTTGCTGTCTTAAGAAAAG
128 GACATTGATGCTTTGGTGTCTCAAGAAAAG
* * * * * ** * ** *
11345 CTTTTCTTCG-CATCGTTTTTGATAGAATCAACGTTTGTCTATTAAATAAGCCGAACATTAATAC
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATTC
* * * ** * * * *
11409 T-CAAACTAATC-CTTATTCCTTTT-AGATTGAGGCCCCATAA-ATATAGTCTTCTCATTAGGAT
64 TCCTAAC-AGTCTCCT-TT-CTTTTCAGATTG-GGAACCAAAACACATTGTCTTCT-GTTAGGAT
* * * * *
11470 ACACGATATTGATGCTTTGGTTTCGCAATAAAGG
124 ACACGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * ** * * * * * * *
11504 CTTTT-TTCCCACCAATCGTT-GTA-AAGTCTAAGTTCGTCCGTCAAATGAGACAAATATGGATT
1 CTTTTCTTCGC-CCTATTTTTCATAGAA-TCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATT
** * * * ***** * * * * *
11566 CTAGTAA-AGATCTTCATTCTTTTTCCGATAAACCACTAAAAACATATTCTCCTCT-TTAGGACA
63 CTCCTAACAG-TCTCCTTTC-TTTTCAGATTGGGAAC-CAAAACACATTGTCTTCTGTTAGGATA
* * * * ** * ** * *
11629 AAAGACATTGAAGTTTTTCT-TTTGCGTGGAAAT
125 CACGACATTGATGCTTTGGTGTCT-CAAGAAAAG
* * * * * *
11662 CTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTCT
* * *
11727 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTT-TGTTAGGATACCC
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAA-CCAAAACACATTGTCTTCTGTTAGGATACAC
* *
11791 GACATTGATGCTTTGCTGTCTTAAGAAAAG
128 GACATTGATGCTTTGGTGTCTCAAGAAAAG
* ** * * * * ** * * ** *
11821 CTTTTCTTTG-TATCGTTTTTGATAGAATCAACGTTTGTCTATTAAAGAAGCCGAACATTAATAC
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATTC
* * * ** * * * *
11885 T-CAAACTAATC-CTTATTCCTTTT-AGATTGAGGCCCCATAA-ATATAGTCTTCTCATTAGGAT
64 TCCTAAC-AGTCTCCT-TT-CTTTTCAGATTG-GGAACCAAAACACATTGTCTTCT-GTTAGGAT
* * * * *
11946 ACACGATATTGATGCTTTGGTTTCGCAATAAAGG
124 ACACGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * * * * *
11980 CTTTTCTTTGCCCTATTTTTCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTCT
* * * *
12045 CCTAACAGTCTCATTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTT-TGTTAGGATACCC
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAA-CCAAAACACATTGTCTTCTGTTAGGATACAC
* *
12109 GACATTGATGCTTTGCTGTCTTAAGAAAAG
128 GACATTGATGCTTTGGTGTCTCAAGAAAAG
* ** * * * * ** * ** *
12139 CTTTTCTTTG-TATCGTTTTTGATAGAATCAACGTTTGTCTATTAAATAAGCCGAACATTAATAC
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATTC
* * * ** * * * *
12203 T-CAAACTAATC-CTTATTCCTTTT-AGATTGAGGCCCCATAA-ATATAGTCTTCTCATTAGGAT
64 TCCTAAC-AGTCTCCT-TT-CTTTTCAGATTG-GGAACCAAAACACATTGTCTTCT-GTTAGGAT
* * * * *
12264 ACACGATATTGATGCTTTGGTTTCGCAATAAAGG
124 ACACGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * ** * * ** * * * *
12298 CTTTT-TTCCCACCAATCGTT-GTA-AAGTCTAAGTTCGTCTGTCAAATGAGACAAATATGGATT
1 CTTTTCTTCGC-CCTATTTTTCATAGAA-TCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATT
** * * * ***** * * * * *
12360 CTAGTAA-AGATCTTCATTCTTTTTCCGATAAACCACTACAAACATATTCTCCTCT-TTAGGACA
63 CTCCTAACAG-TCTCCTTTC-TTTTCAGATTGGGAACCA-AAACACATTGTCTTCTGTTAGGATA
* * * * ** * ** * *
12423 AAAGACATTGAAGTTTTTCT-TTTGCGTGGAAAT
125 CACGACATTGATGCTTTGGTGTCT-CAAGAAAAG
* * * * * *
12456 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTCT
* * *
12521 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACGTTGCCTT-TGTTAGGATACCC
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAA-CCAAAACACATTGTCTTCTGTTAGGATACAC
* *
12585 GACATTGATGCTTTGCTGTCTTAAGAAAAG
128 GACATTGATGCTTTGGTGTCTCAAGAAAAG
* * * * * ** * ** *
12615 CTTTTCTTCG-CATCGTTTTTGATAGAATCAACGTTTGTCTATTAAATAAGCCGAACATTAATAC
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATTC
* * * ** * * * *
12679 T-CAAACTAATC-CTTATTCCTTTT-AGATTGAGGCCCCATAA-ATATAGTCTTCTCATTAGGAT
64 TCCTAAC-AGTCTCCT-TT-CTTTTCAGATTG-GGAACCAAAACACATTGTCTTCT-GTTAGGAT
* * * * *
12740 ACACGATATTGATGCTTTGGTTTCGCAATAAAGG
124 ACACGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * ** * * * * * * *
12774 CTTTT-TTCCCACCAATCGTT-GTA-AAGTCTAAGTTCGTCCGTCAAATGAGACAAATATGGATT
1 CTTTTCTTCGC-CCTATTTTTCATAGAA-TCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATT
** * * * ***** * * * * *
12836 CTAGTAA-AGATCTTCATTCTTTTTCCGATAAACCACTACAAACATATTCTCCTCT-TTAGGACA
63 CTCCTAACAG-TCTCCTTTC-TTTTCAGATTGGGAACCA-AAACACATTGTCTTCTGTTAGGATA
* * * * ** * ** * *
12899 AAAGACATTGAAGTTTTTCT-TTTGCGTGGAAAT
125 CACGACATTGATGCTTTGGTGTCT-CAAGAAAAG
* * * * * * *
12932 CTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTCT
* * *
12997 CCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTT-TGTTAGGATACCC
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAA-CCAAAACACATTGTCTTCTGTTAGGATACAC
* *
13061 GACATTGATGGTTTGGTGCCTCAAGAAAAG
128 GACATTGATGCTTTGGTGTCTCAAGAAAAG
* * * * * * ** *
13091 CTTTTCTTCG-CGTCATTTTTGATAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATAC
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATTC
* * * * * * * * * *
13155 T-CAAACTAATCCTCATTCCATTT-AGATTTAGGCACCATAA-ACATAGTCTTCTCATTAGGATA
64 TCCTAAC-AGT-CTCCTTTCTTTTCAGA-TTGGGAACCAAAACACATTGTCTTCT-GTTAGGATA
* * *
13217 CACGATATTGATGCTTTGGT-T-TGCAACAAAGG
125 CACGACATTGATGCTTTGGTGTCT-CAAGAAAAG
* * ** * * ** * * * *
13249 C-TTTCTTCCCACCAATCGTT-GT-GAAGTCTAAGTTCGGGCCTCAAATGAGACAATATGGATTC
1 CTTTTCTTCGC-CCTATTTTTCATAGAA-TCAAAGTTCGTCCCTTAAATAAGACAACATCGATTC
** * * * * *** * * * * * *
13311 TAGTAA-TGATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCT-TTAGGACAA
64 TCCTAACAG-TCTCCTTTC-TTTTCAGATTGGGAACCA-AAACACATTGTCTTCTGTTAGGATAC
* * * * * ** * ** * *
13374 AAGTCATTCAAGTTTTTCT-TTTGCCTGGAAAT
126 ACGACATTGATGCTTTGGTGTCT-CAAGAAAAG
* * * * * * *
13406 CTTTTCTTCGCCCTATTTTTCTTAAAATTAATGTTCATCCTTTGAATAAGACAACCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTCT
* * * *
13471 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCTAAAACACATTGCCAT-TGTTAGGATACCC
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAA-CCAAAACACATTGTCTTCTGTTAGGATACAC
13535 GACATTGATGCTTTGGTGTCTCAAGAAAAG
128 GACATTGATGCTTTGGTGTCTCAAGAAAAG
* * * * * * * * * ** *
13565 CTTTTCTTC-ACGTCGTTTTTAATAGAATCAACA-TTTGTCTCTTAAATATGCCGAACGTTAATA
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAA-AGTTCGTCCCTTAAATAAGAC-AACATCGATT
* * * * * * * * *
13628 CT-CAAACTAATC-CTCATTCTTTTTAGATTTAGGCACCATAA-ACATAGTCTTCTCATTAGGAT
63 CTCCTAAC-AGTCTC-CTTTCTTTTCAGA-TTGGGAACCAAAACACATTGTCTTCT-GTTAGGAT
* * * *
13690 ACACGATATTGATGCTTTGGTTTCGT-AACAAAGG
124 ACACGACATTGATGCTTTGGTGTC-TCAAGAAAAG
* * * ** * * * * * *
13724 ATTTT-TTC-CCACCAATCGT-AGTA-AAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGAT
1 CTTTTCTTCGCC-CTATTTTTCA-TAGAA-TCAAAGTTCGTCCCTTAAATAAGAC-AACATCGAT
** * * * * * *** * * * ** *
13785 TCTAGTAA-TGAACTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCCCT-TTAGGAC
62 TCTCCTAACAG-TCTCCTTTCTTTT-CAGATTGGGAACCA-AAACACATTGTCTTCTGTTAGGAT
* * * * ** * ** * *
13848 AAAAGACATTGAAGTTTTTCCT-TTTCCTGGAAAT
124 ACACGACATTGATG-CTTTGGTGTCTCAAGAAAAG
* * * * * * * *
13882 CTTTTCTTCGCCATATTTTGCTTAAAATGAAAGTTCATCCTTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTCT
* *
13947 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTT-TGTTAGGATACCC
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAA-CCAAAACACATTGTCTTCTGTTAGGATACAC
* *
14011 GACATTGATGCTTTGCTGTCTTAAGAAAAG
128 GACATTGATGCTTTGGTGTCTCAAGAAAAG
* * * * * ** * ** *
14041 CTTTTCTTCG-CATCGTTTTTGATAGAATCAACGTTTGTCTATTAAATAAGCCGAACATTAATAC
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATTC
* * * ** * * * *
14105 T-CAAACTAATC-CTTATTCCTTTT-AGATTGAGGCCCCATAA-ATATAGTCTTCTTATTAGGAT
64 TCCTAAC-AGTCTCCT-TT-CTTTTCAGATTG-GGAACCAAAACACATTGTCTTC-TGTTAGGAT
* * * * *
14166 ACACGATATTGATGCTTTGGTTTCGCAATAAAGG
124 ACACGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * ** * * * * * * *
14200 CTTTT-TTCCCACCAATCGTT-GTA-AAGTCTAAGTTCGTGCGTTAAATGAGACAAATATGGATT
1 CTTTTCTTCGC-CCTATTTTTCATAGAA-TCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATT
** * * * * * *** * * * *
14262 CTAGTAA-TGATCTTCATTCTTTTTCTGGTAAAGCACTACAAACACATTCTGC-TCT-TTAGGAA
63 CTCCTAACAG-TCTCCTTTC-TTTTCAGATTGGGAACCA-AAACACATTGT-CTTCTGTTAGGAT
* * * * ** * ** * *
14324 AAAAGACATTGAAGTTTTTCT-TTTGCTTGGAAAT
124 ACACGACATTGATGCTTTGGTGTCT-CAAGAAAAG
* * * * * * ** *
14358 CTTTTCTTCGCCCTATTTTCCTTAAAATTAATGTTCATCAATTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTCT
* * * * *
14423 CCTAACAGTCTCCTTTCTTTTTAAGATTGGGAAGCTAAAACACATTGCCAT-TGTTAGGATACCC
65 CCTAACAGTCTCCTTTC-TTTTCAGATTGGGAA-CCAAAACACATTGTCTTCTGTTAGGATACAC
** *
14487 GACATTGATTATTTGGTGTCTCACGAAAAG
128 GACATTGATGCTTTGGTGTCTCAAGAAAAG
* * * * * * * * * ** **
14517 CTTTTCTTCG-CGTCATTATTAATAGAATCAACGTTTGTCTCTAAAATATGCCGAACATTAAAAC
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATTC
* * * * ** * * * * * *
14581 T-CAAACTAATC-CTCATTCTTTTTAGATTTACGCACCATAA-ACATAGTATTCTCATTAGCATA
64 TCCTAAC-AGTCTC-CTTTCTTTTCAGA-TTGGGAACCAAAACACATTGTCTTCT-GTTAGGATA
* * * *
14643 CACGATATTGATGCTTTGGT-TCACAACAAAGG
125 CACGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * ** * * ** * * * *
14675 C-TTTCTTCCCACCAATCGTT-GT-GAAGTCTAAGTTCGGGCCTCAAATGAGACAATATGGATTC
1 CTTTTCTTCGC-CCTATTTTTCATAGAA-TCAAAGTTCGTCCCTTAAATAAGACAACATCGATTC
** * * * * *** * * * * * *
14737 TAGTAA-TGATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCT-TTAGGACAA
64 TCCTAACAG-TCTCCTTTC-TTTTCAGATTGGGAACCA-AAACACATTGTCTTCTGTTAGGATAC
* * * ** * ** * *
14800 AAGACATTGAAGTTTTTCT-TTTGCGTGGAAAT
126 ACGACATTGATGCTTTGGTGTCT-CAAGAAAAG
* * * * * * *
14832 CATTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAACATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATTCT
* * *
14897 CCTAATAGTCTCCTTTCTCTTCAAGATTGGGAAGCCAAAACACATTG-CTAT-TGTTAGGATACC
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAA-CCAAAACACATTGTCT-TCTGTTAGGATACA
* *
14960 CGACATTGAGGCTCTGGTGTCTCAAGAAAAG
127 CGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * * ** * * * ** *
14991 CTTTTCTTCG-CGTCATTTTTAATAGAATCAACGTTTTTCTCTTAAATATGCCGAACATTAATAC
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATTC
* * * * * * * * *
15055 T-CAAACTAATC-CTCATTCTTATT-AGATTTAGGCACCATAA-ACATAGTCTTCTCATTAGCAT
64 TCCTAAC-AGTCTC-CTTTCTT-TTCAGA-TTGGGAACCAAAACACATTGTCTTCT-GTTAGGAT
* * * * *
15116 ACACGATATTGATGCTCTGGTTTCGCAA-CAAAG
124 ACACGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * * * ** * * * * *
15149 GTTTTTTTCCCACCAATCGTT-GTA-AAGTCTAAGTTTGAT-CCTCAAATGAGACAAACA-CGGA
1 CTTTTCTTCGC-CCTATTTTTCATAGAA-TCAAAGTTCG-TCCCTTAAATAAGAC-AACATC-GA
*** * * * * * *** * * * *
15210 TTCTAGGAA-TGAACTTCGTTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCT-TTAGGA
61 TTCTCCTAACAG-TCTCCTTTCTTTT-CAGATTGGGAACCA-AAACACATTGTCTTCTGTTAGGA
* * * * * ** * ** * *
15273 CAAAAGACATTGAAGTTTTTCT-TTTGCTTGGAAAT
123 TACACGACATTGATGCTTTGGTGTCT-CAAGAAAAG
* * * * * * * *
15308 CTTTTCTTCGCACTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCAATTCT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTCT
* *
15373 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTG-CTAT-TGTTAGCATACC
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAA-CCAAAACACATTGTCT-TCTGTTAGGATACA
15436 CGACATTGATGCTTTGGTGTCTCAAGAAAAG
127 CGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * * * * * * * ** *
15467 CTTTTCTTC-ACGTCGTTTTTGATAGAATCAACGTTTGTCTCTTAAATAAG-CTGAACTTTAATA
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGAC--AACATCGATT
* * * * * * * ** *
15530 CT-CAAACTAATC-CTCATTCTTTTTAAATTTAGGCACCGTAA-ACATAT-TCTTCTCATTAGGA
63 CTCCTAAC-AGTCTC-CTTTCTTTTCAGA-TTGGGAACCAAAACACAT-TGTCTTCT-GTTAGGA
* * * * * * *
15591 TACACGATATTGATTCTCTGGTTTCGCAACAAAGG
123 TACACGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * * ** * * * * * *
15626 CGTTT-TTCCCACCAATCATT-GTA-AAGTCTAAGTTTGTGCCTCAAATGAGACAAACA-CGGAT
1 CTTTTCTTCGC-CCTATTTTTCATAGAA-TCAAAGTTCGTCCCTTAAATAAGAC-AACATC-GAT
** * * * * * *** * * * *
15687 TCTAGTAATTA-ACTTCATTCTTTTCCTGATAAAGTACTATAAACACATTCTCTTCT-TTAGGAC
62 TCTCCTAA-CAGTCTCCTTTCTTTT-CAGATTGGGAACCA-AAACACATTGTCTTCTGTTAGGAT
* * * * ** * * ** * *
15750 AAAAGACATTGAAGTTTTTCTTTTTCCTGGAAAT
124 ACACGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * * * * * * * *
15784 CTTTTCTTCGCCATATTTTGCTTAAAATGAACGTTCATCCCTTGAATAAGACAAGCATCGATTAT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTCT
* *
15849 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACATATTG-CTAT-TGTTAGGATACC
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAA-CCAAAACACATTGTCT-TCTGTTAGGATACA
* *
15912 CGACATTGATGCTTTGGTGTCACGAGAAAAG
127 CGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * * * * * * ** *
15943 CTTTTCTTC-ACGTCATTTTTAATAGAATCAACGTTCGTCTCTTAAATATGCCGAACATTAATAC
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATTC
* * * * * * * * *
16007 T-CAAACTAATC-CTCATTCTTTTTAGATTTAGGCACCATAA-ACATAGTCTTCTCATTAGGATA
64 TCCTAAC-AGTCTC-CTTTCTTTTCAGA-TTGGGAACCAAAACACATTGTCTTCT-GTTAGGATA
* * * * *
16069 CACGATATTGATGCTCTGGTTTCGCAA-CAAAG
125 CACGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * * * ** * * * *
16101 GTTTTTTTCCCACCAATCGTT-GTA-AAGTCTAAGTTCGAT-CCTCAAATGAGACAAACA-CGGA
1 CTTTTCTTCGC-CCTATTTTTCATAGAA-TCAAAGTTCG-TCCCTTAAATAAGAC-AACATC-GA
*** * * * * * *** * * * *
16162 TTCTAGGAA-TGAACTTCGTTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCT-TTAGGA
61 TTCTCCTAACAG-TCTCCTTTCTTTT-CAGATTGGGAACCA-AAACACATTGTCTTCTGTTAGGA
* * * * * ** * * * *
16225 CAAAAGACATTGAAGTTTTTCT-TTTGCTAGGAAAT
123 TACACGACATTGATGCTTTGGTGTCT-CAAGAAAAG
* * * * * * * *
16260 CTTTTCTTCGCTCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCAATTCT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTCT
*
16325 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGTCAAAACACATTG-CTAT-TGTTAGGATA-A
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAA-CCAAAACACATTGTCT-TCTGTTAGGATACA
16387 CCGACATTGATGCTTTGGTGTCTCAAGAAAAG
127 -CGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * * * * * * * * ** *
16419 CTTTTCTTC-ACGTCGTTTTTGATAGAATCAACGCTGGTCTCTTAAATAAG-CTAAACTTTAATA
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGAC--AACATCGATT
* * * * * * * * * *
16482 CT-CAAACTAATC-CTCATTCTTTTTAGATTTAGGCAGCATAA-ACATAGTCTTCTCATTAGGAT
63 CTCCTAAC-AGTCTC-CTTTCTTTTCAGA-TTGGGAACCAAAACACATTGTCTTCT-GTTAGGAT
* * * *
16544 ACACGATATTGATGCTTTGGT-TCGCAACAAAGG
124 ACACGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * ** * * * ** * * * *
16577 C-TTTCTTCCCACCAATCGTT-GT-GAAGTCTAAGTTTGGGCCTCAAATGAGACAATATGGATTC
1 CTTTTCTTCGC-CCTATTTTTCATAGAA-TCAAAGTTCGTCCCTTAAATAAGACAACATCGATTC
** * * * * *** * * * * * *
16639 TAGTAA-TGATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCT-TTAGGACAA
64 TCCTAACAG-TCTCCTTTC-TTTTCAGATTGGGAACCA-AAACACATTGTCTTCTGTTAGGATAC
* * * ** * ** * *
16702 AAGACATTGAAGTTTTTCT-TTTGCCTGGAAAT
126 ACGACATTGATGCTTTGGTGTCT-CAAGAAAAG
* * * * * * *
16734 CTTTTCTTCGCCCTATTTTTCTTAAAATGAAAGTTCATCCCATGAATAAGACAAGCATCGTTTCT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTCT
* * *
16799 CCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTT-TGTTAGGATACCC
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAA-CCAAAACACATTGTCTTCTGTTAGGATACAC
* *
16863 GACATTGATGCTTTGCTGTCTTAAGAAAAG
128 GACATTGATGCTTTGGTGTCTCAAGAAAAG
** * * * * ** * ** *
16893 CTTTTCTTCG-TATCGTTTTTGATAGAATCAACGTTTGTCTATTAAATAAGCCGAACATTAATAC
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATTC
* * * ** * * * *
16957 T-CAAACTAATC-CTTATTCCTTTT-AGATTGAGGCCCCATAA-ATATAGTCTTCTCATTAGGAT
64 TCCTAAC-AGTCTCCT-TT-CTTTTCAGATTG-GGAACCAAAACACATTGTCTTCT-GTTAGGAT
* * * * * *
17018 ACACGATACTGATGCTTTGGTTTCGCAATAAAGG
124 ACACGACATTGATGCTTTGGTGTCTCAAGAAAAG
* * ** * * * * * * * *
17052 CTTTT-TTCCCACCAATCATT-GTA-AAGTCTAAGTTCGTGCGTCAAATGAGACAAATATGGATT
1 CTTTTCTTCGC-CCTATTTTTCATAGAA-TCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATT
** * * * ***** * * * * *
17114 CTAGTAA-TGATCTTCATTCTTTTTCAGATAAACCACTACAAACATATTCTCCTCT-TTAGGACA
63 CTCCTAACAG-TCTCCTTTC-TTTTCAGATTGGGAACCA-AAACACATTGTCTTCTGTTAGGATA
* * * * ** * ** * *
17177 AAAGACATTGAAGTTTTTCT-TTTGCGTGGAAAT
125 CACGACATTGATGCTTTGGTGTCT-CAAGAAAAG
* * * * * *
17210 CTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTCT
* * *
17275 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTT-TGTTAGGATACCC
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAA-CCAAAACACATTGTCTTCTGTTAGGATACAC
* *
17339 GACATTGATGCTTTGCTGTCTTAAGAAAAG
128 GACATTGATGCTTTGGTGTCTCAAGAAAAG
* ** * * * ** * * ** *
17369 CTTTTCTTTG-TATCGTTTTTGATAGAAT-AAACGTTTGTCTATTAAAGAAGCCGAACATTAATA
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAAA-GTTCGTCCCTTAAATAAGAC-AACATCGATT
* * * ** * * * *
17432 CT-CAAACTAATC-CTTATTCCTTTT-AGATTGAGGCCCCATAA-ATATAGTCTTCTCATTAGGA
63 CTCCTAAC-AGTCTCCT-TT-CTTTTCAGATTG-GGAACCAAAACACATTGTCTTCT-GTTAGGA
* * * *
17493 TACACGATATTGATGCTTTGGTTTCGC-AGTAAAGG
123 TACACGACATTGATGCTTTGGTGTCTCAAG-AAAAG
* * * * * *
17528 CTTTTCTTTGCCCTATTTTTCATAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTCT
* * *
17593 CCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTT-TGTTAGGATACCC
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAA-CCAAAACACATTGTCTTCTGTTAGGATACAC
*
17657 GACATTGATGCTTTGGTGCCTCAAGAAAAG
128 GACATTGATGCTTTGGTGTCTCAAGAAAAG
* * * * * * ** *
17687 CTTTTCTTCG-CGTCATTTTTGATAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATAC
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATTC
* * * * * * * * * *
17751 T-CAAACTAATCCTCATTCCATTT-AGATTTAGGCACCATAA-ACATAGTCTTCTCATTAGGATA
64 TCCTAAC-AGT-CTCCTTTCTTTTCAGA-TTGGGAACCAAAACACATTGTCTTCT-GTTAGGATA
* * *
17813 CACGATATTGATGCTTTGG-GT-TGCAACAAAGG
125 CACGACATTGATGCTTTGGTGTCT-CAAGAAAAG
* * ** * * ** * * * *
17845 C-TTTCTTCCCACCAATCGTT-GT-GAAGTCTAAGTTCGGGCCTCAAATGAGACAATATGGATTC
1 CTTTTCTTCGC-CCTATTTTTCATAGAA-TCAAAGTTCGTCCCTTAAATAAGACAACATCGATTC
** * * * * *** * * * * * *
17907 TAGTAA-TGATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCT-TTAGGACAA
64 TCCTAACAG-TCTCCTTTC-TTTTCAGATTGGGAACCA-AAACACATTGTCTTCTGTTAGGATAC
* * * ** * ** * *
17970 AAGACATTGAAGTTTTTCT-TTTGCCTGGAAAT
126 ACGACATTGATGCTTTGGTGTCT-CAAGAAAAG
* * * *
18002 CTTTTCTTCGCCCTATTTTTCTTAGAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTCT
* * * *
18067 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCTAAAACACATTGCCAT-TGTTAGGATACCC
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAA-CCAAAACACATTGTCTTCTGTTAGGATACAC
18131 GACATTGATGCTTTGGTGTCTCAAGAAAAG
128 GACATTGATGCTTTGGTGTCTCAAGAAAAG
* * * * * * * ** *
18161 CTTTTCTTCG-CGTCATTTTTAATAGAATCAACGTTTGTCTCTTAAATATGCCGAACATTAATAC
1 CTTTTCTTCGCCCT-ATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATTC
* * * * * * * * * *
18225 T-CAAACTAATC-CTCATTCTTTTTAGATTTAGGCACCATAA-ACATAGTCTTCTCATTAGCATA
64 TCCTAAC-AGTCTC-CTTTCTTTTCAGA-TTGGGAACCAAAACACATTGTCTTCT-GTTAGGATA
* * * *
18287 CACGATATTGATGCTCTGGTTTCGT-AA-CAAAG
125 CACGACATTGATGCTTTGGTGTC-TCAAGAAAAG
* * * * ** * * * * * * * *
18319 GTTTTTTTCCCACCAATCGTT-GTA-AAGTCTAAGTTCGTGCGTCAAATGAGACAAATATGGATT
1 CTTTTCTTCGC-CCTATTTTTCATAGAA-TCAAAGTTCGTCCCTTAAATAAGAC-AACATCGATT
** * * * * * * *** * * * * *
18382 CTAGTAA-TGATCTTCATACTTTTTCTGGTAAAGCACTACAAACACATTCTCCTCT-TTAGGAAA
63 CTCCTAACAG-TCTCCTTTC-TTTTCAGATTGGGAACCA-AAACACATTGTCTTCTGTTAGGATA
* * * * * ** * ** *
18445 AAAGATATTGAAGTTTTTCT-TTTGCTTGAAAAT
125 CACGACATTGATGCTTTGGTGTCT-CAAGAAAAG
* * * * *
18478 CTTTTCTTCGCCCTATTTTTCTTAGAATGAAAGTTCATCCCTTGAATAAGACAAGAATCGATTCT
1 CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAA-CATCGATTCT
* * *
18543 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCTAAAACACATTGTCAT-TGTTAGGATACCC
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAA-CCAAAACACATTGTCTTCTGTTAGGATACAC
18607 GACATTGATGCTTTGGTGTCTCAAGAAAAG
128 GACATTGATGCTTTGGTGTCTCAAGAAAAG
18637 CTTTTCTTCGC
1 CTTTTCTTCGC
18648 GTCGTTTTTG
Statistics
Matches: 11911, Mismatches: 4908, Indels: 2200
0.63 0.26 0.12
Matches are distributed among these distances:
155 16 0.00
156 393 0.03
157 1033 0.09
158 3283 0.28
159 6443 0.54
160 711 0.06
161 32 0.00
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (157 bp):
CTTTTCTTCGCCCTATTTTTCATAGAATCAAAGTTCGTCCCTTAAATAAGACAACATCGATTCTC
CTAACAGTCTCCTTTCTTTTCAGATTGGGAACCAAAACACATTGTCTTCTGTTAGGATACACGAC
ATTGATGCTTTGGTGTCTCAAGAAAAG
Found at i:25517 original size:159 final size:157
Alignment explanation
Indices: 25354--26793 Score: 482
Period size: 159 Copynumber: 9.1 Consensus size: 157
25344 TCCAGGAAAT
* * *
25354 CTTTTCTTCGCCATATTTTGCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCATATTTTG-TTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCT
* *
25419 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAACCCAAAACACATTGCCTTTGTTAGGATACACG
*
25484 ACATTGATGCTTTGCTGTCTTAAGAAAAT
129 ACATTGATGCTTTGCTGTCTTAAGAAAAG
* * * * * * *
25513 CTTTTCTTCG-CATCGTTTTTGATAGAATCAACGTT--TGCCTATTAAATAAGCCGAA-CATTAA
1 CTTTTCTTCGCCAT--ATTTTGTTAAAATCAAAGTTCAT-CC-CTTAAATAAGAC-AAGCATCAA
* * * * * * * * * *
25574 TACT-CAAACTAATC-CTTATTCCTTTT-AGATTGAGG-CCCCATAA-ATATAGTCTTCTCATTA
61 TTCTCCTAAC-AGTCTCCT-TT-CTTTTCAGATTG-GGAACCCAAAACACATTGCCTT-T-GTTA
* * * ** * *
25634 GGATACACGATATTGATGCTTTGGTTTCGCAATAAAGG
120 GGATACACGACATTGATGCTTTGCTGTCTTAAGAAAAG
* * * * * * * * ** **
25672 CTTTT-TTC-CCACCAATCGTTG-TAAAGTCTAAGTTCGTCCGTCAAATGAGACAAATATGGATT
1 CTTTTCTTCGCCA--TAT-TTTGTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATT
** * * * * * * *
25734 CTAGTAA-AGATCTTCATTCTTTTTCCGA-T--AAACCACTACAAACATATTCTCCTCT-TTAGG
63 CTCCTAACAG-TCTCCTTTC-TTTTCAGATTGGGAACC-C-A-AAACACATT-GCCTTTGTTAGG
* * * * * * ** * *
25794 ACAAAAGACATTGAAGTTTTTCT-T-TTGCGTGGAAAT
122 ATACACGACATTGATGCTTTGCTGTCTT--AAGAAAAG
* * * * *
25830 CTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCATATTTT-GTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCT
* * *
25895 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCG
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAACCCAAAACACATTGCCTTTGTTAGGATACACG
25960 ACATTGATGCTTTGCTGTCTTAAGAAAAG
129 ACATTGATGCTTTGCTGTCTTAAGAAAAG
* * * * * * ** ** * * * *
25989 CTTTTCTTTG-TATCGTTTTTGATAGAATCAACGTTTGTCTATTAAAGAAGCCGAA-CATTAATA
1 CTTTTCTTCGCCAT--ATTTTGTTAAAATCAAAGTTCATCCCTTAAATAAGAC-AAGCATCAATT
* * * * * * * * *
26052 CT-CAAACTAATC-CTTATTCCTTTT-AGATTGAGG-CCCCATAA-ATATAGTCTTCTCATTAGG
63 CTCCTAAC-AGTCTCCT-TT-CTTTTCAGATTG-GGAACCCAAAACACATTGCCTT-T-GTTAGG
* * * ** * *
26112 ATACACGATATTGATGCTTTGGTTTCGCAATAAAGG
122 ATACACGACATTGATGCTTTGCTGTCTTAAGAAAAG
* * * * *
26148 CTTTTCTTTGCCCTATTTTTCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCAATTCT
1 CTTTTCTTCGCCATA-TTTTGTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCT
* * *
26213 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCG
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAACCCAAAACACATTGCCTTTGTTAGGATACACG
26278 ACATTGATGCTTTGCTGTCTTAAGAAAAG
129 ACATTGATGCTTTGCTGTCTTAAGAAAAG
* * * * * * ** ** * * *
26307 CTTTTCTTTG-TATCGTTTTTGATAGAATCAACGTTTGTCTATTAAATAAGCCGAA-CATTAATA
1 CTTTTCTTCGCCAT--ATTTTGTTAAAATCAAAGTTCATCCCTTAAATAAGAC-AAGCATCAATT
* * * * * * * * *
26370 CT-CAAACTAATC-CTTATTCCTTTT-AGATTGAGG-CCCCATAA-ATATAGTCTTCTCATTAGG
63 CTCCTAAC-AGTCTCCT-TT-CTTTTCAGATTG-GGAACCCAAAACACATTGCCTT-T-GTTAGG
* * * ** * *
26430 ATACACGATATTGATGCTTTGGTTTCGCAATAAAGG
122 ATACACGACATTGATGCTTTGCTGTCTTAAGAAAAG
* * * * * * * * ** **
26466 CTTTT-TTC-CCACCAATCGTTG-TAAAGTCTAAGTTCGTCCGTCAAATGAGACAAATATGGATT
1 CTTTTCTTCGCCA--TAT-TTTGTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATT
** * * * * * * *
26528 CTAGTAA-AGATCTTCATTCTTTTTCCGA-T--AAACCACTACAAACATATTCTCCTCT-TTAGG
63 CTCCTAACAG-TCTCCTTTC-TTTTCAGATTGGGAACC-C-A-AAACACATT-GCCTTTGTTAGG
* * * * * * ** * *
26588 ACAAAAGACATTGAAGTTTTTCT-T-TTGCGTGGAAAT
122 ATACACGACATTGATGCTTTGCTGTCTT--AAGAAAAG
* * * * *
26624 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCATATTTT-GTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCT
* *
26689 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
65 CCTAACAGTCTCCTTTCTTTTC-AGATTGGGAACCCAAAACACATTGCCTTTGTTAGGATACACG
26754 ACATTGATGCTTTGCTGTCTTAAGAAAAG
129 ACATTGATGCTTTGCTGTCTTAAGAAAAG
26783 CTTTTCTTCGC
1 CTTTTCTTCGC
26794 ATCGTTTTTG
Statistics
Matches: 875, Mismatches: 306, Indels: 200
0.63 0.22 0.14
Matches are distributed among these distances:
156 4 0.00
157 36 0.04
158 223 0.25
159 516 0.59
160 74 0.08
161 16 0.02
162 6 0.01
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (157 bp):
CTTTTCTTCGCCATATTTTGTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTC
CTAACAGTCTCCTTTCTTTTCAGATTGGGAACCCAAAACACATTGCCTTTGTTAGGATACACGAC
ATTGATGCTTTGCTGTCTTAAGAAAAG
Found at i:26407 original size:318 final size:318
Alignment explanation
Indices: 25830--26470 Score: 1246
Period size: 318 Copynumber: 2.0 Consensus size: 318
25820 GCGTGGAAAT
*
25830 CTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCAATTCT
25895 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCG
25960 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTTGTATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTTGTATCGTTTTTGATAGAATCAACGTTT
26025 GTCTATTAAAGAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTATTAAAGAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
26090 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGG
261 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGG
* *
26148 CTTTTCTTTGCCCTATTTTTCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCAATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCAATTCT
26213 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCG
26278 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTTGTATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTTGTATCGTTTTTGATAGAATCAACGTTT
*
26343 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTATTAAAGAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
26408 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGG
261 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGG
26466 CTTTT
1 CTTTT
26471 TTCCCACCAA
Statistics
Matches: 319, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
318 319 1.00
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (318 bp):
CTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCAATTCT
CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCG
ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTTGTATCGTTTTTGATAGAATCAACGTTT
GTCTATTAAAGAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGG
Found at i:26725 original size:794 final size:794
Alignment explanation
Indices: 25354--26946 Score: 3042
Period size: 794 Copynumber: 2.0 Consensus size: 794
25344 TCCAGGAAAT
*
25354 CTTTTCTTCGCCATATTTTGCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCATATTTTGCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCAATTCT
*
25419 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCG
*
25484 ACATTGATGCTTTGCTGTCTTAAGAAAATCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTT
25549 GCCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GCCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
25614 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
261 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
25679 CCCACCAATCGTTGTAAAGTCTAAGTTCGTCCGTCAAATGAGACAAATATGGATTCTAGTAAAGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGTCCGTCAAATGAGACAAATATGGATTCTAGTAAAGA
25744 TCTTCATTCTTTTTCCGATAAACCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGAA
391 TCTTCATTCTTTTTCCGATAAACCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGAA
*
25809 GTTTTTCTTTTGCGTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTG
456 GTTTTTCTTTTGCGTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTG
25874 AATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACA
521 AATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACA
* *
25939 ATGCCTTTGTTAGGATACCCGACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTTGTATCG
586 ATGCCTTTGTTAGGATACCCGACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCG
26004 TTTTTGATAGAATCAACGTTTGTCTATTAAAGAAGCCGAACATTAATACTCAAACTAATCCTTAT
651 TTTTTGATAGAATCAACGTTTGTCTATTAAAGAAGCCGAACATTAATACTCAAACTAATCCTTAT
26069 TCCTTTTAGATTGAGGCCCCATAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG
716 TCCTTTTAGATTGAGGCCCCATAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG
26134 TTTCGCAATAAAGG
781 TTTCGCAATAAAGG
* * * *
26148 CTTTTCTTTGCCCTATTTTTCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCAATTCT
1 CTTTTCTTCGCCATATTTTGCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCAATTCT
26213 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCG
* *
26278 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTTGTATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTT
*
26343 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GCCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
26408 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
261 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
26473 CCCACCAATCGTTGTAAAGTCTAAGTTCGTCCGTCAAATGAGACAAATATGGATTCTAGTAAAGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGTCCGTCAAATGAGACAAATATGGATTCTAGTAAAGA
26538 TCTTCATTCTTTTTCCGATAAACCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGAA
391 TCTTCATTCTTTTTCCGATAAACCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGAA
26603 GTTTTTCTTTTGCGTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTG
456 GTTTTTCTTTTGCGTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTG
26668 AATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACA
521 AATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACA
*
26733 TTGCCTTTGTTAGGATACCCGACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCG
586 ATGCCTTTGTTAGGATACCCGACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCG
*
26798 TTTTTGATAGAATCAACGTTTGTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTAT
651 TTTTTGATAGAATCAACGTTTGTCTATTAAAGAAGCCGAACATTAATACTCAAACTAATCCTTAT
*
26863 TCCTTTTAGATTGAGGCCCCATAAATATAGTCTTCTCATTAGGATACACGTTATTGATGCTTTGG
716 TCCTTTTAGATTGAGGCCCCATAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG
26928 TTTCGCAATAAAGG
781 TTTCGCAATAAAGG
26942 CTTTT
1 CTTTT
26947 TTCCCACCAA
Statistics
Matches: 783, Mismatches: 16, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
794 783 1.00
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.36
Consensus pattern (794 bp):
CTTTTCTTCGCCATATTTTGCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCAATTCT
CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCG
ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTT
GCCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
CCCACCAATCGTTGTAAAGTCTAAGTTCGTCCGTCAAATGAGACAAATATGGATTCTAGTAAAGA
TCTTCATTCTTTTTCCGATAAACCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGAA
GTTTTTCTTTTGCGTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTG
AATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACA
ATGCCTTTGTTAGGATACCCGACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCG
TTTTTGATAGAATCAACGTTTGTCTATTAAAGAAGCCGAACATTAATACTCAAACTAATCCTTAT
TCCTTTTAGATTGAGGCCCCATAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG
TTTCGCAATAAAGG
Found at i:27367 original size:794 final size:791
Alignment explanation
Indices: 25376--27263 Score: 2196
Period size: 794 Copynumber: 2.4 Consensus size: 791
25366 ATATTTTGCT
* ** * * * *
25376 TAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTC
1 TAAAATTAAAGTTCATCCCTCAAATAAGACAAACATCAATTCTACTAACAGTCTCCATTCTTTTC
* * * * * *** *
25441 AAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGACATTGATGCTTTGCTGTCTTA
66 AAGATT-GAAACCCAAAACACAATGCCTCTGTTAGGACAAAAGACATTGAAGCTTTGCTGTCTTA
* * * * * * *
25506 AGAAAATCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTT--TGCCTATTAAATAAGCCGAAC
130 AGAAAAGCTTTTCTTCG-ACCCTTTTTCATAAAATCAAAGTTCAT-CC-ATTAAATAAGACGAAC
* * * * * *
25569 ATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCATAAATATAGTCTTCTCATTA
192 ATCAATACTCAAACTAATCCCTATTCCTTTTAGATTGAGGACCCAAAAACATAGCCTTCTCATTA
* ** * *
25634 GGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTTCCCACCAATCGTTGTAAAGT
257 GGATACACGACATTGATGCTTTGGTGCCGCAAGAAAAGCTTTTTTCCCACCAATCGTTGTAAAGT
* * * * * ** **
25699 CTAAGTTCGTCCGTCAAATGAGACAAATATGGATTCTAGTAAAGATCTTCATTCTTTTTCCGATA
322 CTAAGTTCGTCCGTCAAATAAGACAAACATGAATACTAG-AAAGATCCTCATTCCATTTCAAATA
*
25764 AACCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCGTGGAAA
386 AACCACCACAAACATATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCGTGGAAA
*
25829 TCTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGATTC
451 TCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTC
25894 TCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCC
516 TCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCC
* *
25959 GACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTTGTATCGTTTTTGATAGAATCAACGTT
581 GACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTT
26024 TGTCTATTAAAGAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCC
646 TGTCTATTAAAGAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCC
26089 ATAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTC
711 ATAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTC
** * ** *
26154 TTTGCCCTATTTTTCT
776 TTCCCCCAATCGTTCG
** * * *
26170 TAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCAATTCTCCTAACAGTCTCCTTTCTTTTC
1 TAAAATTAAAGTTCATCCCTCAAATAAGACAAACATCAATTCTACTAACAGTCTCCATTCTTTTC
* * * * *** *
26235 AAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCGACATTGATGCTTTGCTGTCTTA
66 AAGATT-GAAACCCAAAACACAATGCCTCTGTTAGGACAAAAGACATTGAAGCTTTGCTGTCTTA
* * * * * * ** * *
26300 AGAAAAGCTTTTCTTTGTATCGTTTTTGATAGAATCAACGTTTGTCTATTAAATAAGCCGAACAT
130 AGAAAAGCTTTTCTTCG-ACCCTTTTTCATAAAATCAAAGTTCATCCATTAAATAAGACGAACAT
* * * * * *
26365 TAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCATAAATATAGTCTTCTCATTAGG
194 CAATACTCAAACTAATCCCTATTCCTTTTAGATTGAGGACCCAAAAACATAGCCTTCTCATTAGG
* ** * *
26430 ATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCT
259 ATACACGACATTGATGCTTTGGTGCCGCAAGAAAAGCTTTTTTCCCACCAATCGTTGTAAAGTCT
* * * * * ** **
26495 AAGTTCGTCCGTCAAATGAGACAAATATGGATTCTAGTAAAGATCTTCATTCTTTTTCCGATAAA
324 AAGTTCGTCCGTCAAATAAGACAAACATGAATACTAG-AAAGATCCTCATTCCATTTCAAATAAA
*
26560 CCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCGTGGAAATC
388 CCACCACAAACATATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCGTGGAAATC
26625 TTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTC
453 TTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTC
*
26690 CTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCGA
518 CTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCGA
26755 CATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTTG
583 CATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTTG
*
26820 TCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCAT
648 TCTATTAAAGAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCAT
*
26885 AAATATAGTCTTCTCATTAGGATACACGTTATTGATGCTTTGGTTTCGCAATAAAGGCTTTT-TT
713 AAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTCTT
26949 CCCACCAATCGTT-G
778 CCC-CCAATCGTTCG
* * * * * ** * *
26963 TAAAGTCT-AAGTTCGTCCGTCAAATGAGACAAATATGGATTCTAGTAA-AGATCTTCATTCTTT
1 TAAAAT-TAAAGTTCATCCCTCAAATAAGACAAACATCAATTCTACTAACAG-TCTCCATTC-TT
* * * * * *
27026 TTC-CGA-T-AAACCACTACAAACATATTCTCCTCT-TTAGGACAAAAGACATTGAAGTTTTTCT
63 TTCAAGATTGAAACC-C-A-AAACACAAT-GCCTCTGTTAGGACAAAAGACATTGAAGCTTTGCT
** * * * * * *
27087 -T-TTGCGTGGAAATCTTTTCTTCG-CCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAA
124 GTCTT--AAGAAAAGCTTTTCTTCGACCCT-TTTT-CATAAAATCAAAGTTCATCCATTAAATAA
** * * *
27149 GAC-AAGCATCGTTTCTCCTAAC-AATCTCCT-TT-CTTTTCAAGATTG-GGAAGCCAAAACACA
185 GACGAA-CATCAATACT-CAAACTAATC-CCTATTCCTTTT--AGATTGAGG-ACCCAAAA-ACA
* * * * *
27209 TTGCCTT-T-GTTAGGATACCCGACATTGATGGTTTGGTGCCTCAAGAAAAGCTTTT
243 TAGCCTTCTCATTAGGATACACGACATTGATGCTTTGGTGCCGCAAGAAAAGCTTTT
27264 CTTCGCGTCA
Statistics
Matches: 987, Mismatches: 86, Indels: 43
0.88 0.08 0.04
Matches are distributed among these distances:
790 3 0.00
791 5 0.01
792 16 0.02
793 160 0.16
794 794 0.80
795 8 0.01
796 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.36
Consensus pattern (791 bp):
TAAAATTAAAGTTCATCCCTCAAATAAGACAAACATCAATTCTACTAACAGTCTCCATTCTTTTC
AAGATTGAAACCCAAAACACAATGCCTCTGTTAGGACAAAAGACATTGAAGCTTTGCTGTCTTAA
GAAAAGCTTTTCTTCGACCCTTTTTCATAAAATCAAAGTTCATCCATTAAATAAGACGAACATCA
ATACTCAAACTAATCCCTATTCCTTTTAGATTGAGGACCCAAAAACATAGCCTTCTCATTAGGAT
ACACGACATTGATGCTTTGGTGCCGCAAGAAAAGCTTTTTTCCCACCAATCGTTGTAAAGTCTAA
GTTCGTCCGTCAAATAAGACAAACATGAATACTAGAAAGATCCTCATTCCATTTCAAATAAACCA
CCACAAACATATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCGTGGAAATCTTT
TCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCCTA
ACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCGACAT
TGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTTGTCT
ATTAAAGAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCATAAA
TATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTCTTCCC
CCAATCGTTCG
Found at i:27672 original size:474 final size:476
Alignment explanation
Indices: 26148--31696 Score: 8737
Period size: 476 Copynumber: 11.7 Consensus size: 476
26138 GCAATAAAGG
* * * *
26148 CTTTTCTTTGCCCTATTTTTCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCAATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
*
26213 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* * * **
26278 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTTGTATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTT
* * * *
26343 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACCA
* *
26408 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
* *
26473 CCCACCAATCGTTGTAAAGTCTAAGTTC-GTCCGTCAAATGAGACAAATATGGATTCTAGTAAAG
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGGGCC-TCAAATGAGACAAATATGGATTCTAGTAATG
* *
26537 ATCTTCATTCTTTTTCCGATAAACCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGA
390 ATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGA
*
26602 AGTTTTTCTTTTGCGTGGAAAT
455 AGTTTTTCTTTTGCCTGGAAAT
26624 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
26689 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* * *
26754 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTT
* * * *
26819 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACCA
* * *
26884 TAAATATAGTCTTCTCATTAGGATACACGTTATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
* *
26949 CCCACCAATCGTTGTAAAGTCTAAGTTC-GTCCGTCAAATGAGACAAATATGGATTCTAGTAAAG
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGGGCC-TCAAATGAGACAAATATGGATTCTAGTAATG
* *
27013 ATCTTCATTCTTTTTCCGATAAACCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGA
390 ATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGA
*
27078 AGTTTTTCTTTTGCGTGGAAAT
455 AGTTTTTCTTTTGCCTGGAAAT
* *
27100 CTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
*
27165 CCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* * *
27230 ACATTGATGGTTTGGTGCCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTT
* *
27295 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCATTTAAATTTAGGCACCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACCA
* *
27360 TAAACATACTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTT-GCAACAAAGGCTTTCTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
*
27424 CCCACCAATCGTTGTGAAGTCTAAGTTCGGGCCTCAAATGAGAC-AATATGGATTCTAGTAATGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGGGCCTCAAATGAGACAAATATGGATTCTAGTAATGA
* *
27488 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGTCATTCAA
391 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
27553 GTTTTTCTTTTGCCTGGAAAT
456 GTTTTTCTTTTGCCTGGAAAT
* * * *
27574 CTTTTCTTCGCCCTATTTTTCTTAAAATTAATGTTCATCCTTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
* *
27639 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCTAAAACACATTGCCATTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* * *
27704 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTAATAGAATCAACATTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTT
** * *
27769 GTCTCTTAAATATTCCGAACGTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACCA
* *
27834 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGTAACAAAGGATTTTTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
* *
27899 CCCACCAATCGTAGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGGGCCTCAAATGAGACAAATATGGATTCTAGTAATGA
* * *
27964 ACTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCCCTTTAGGACAAAAGACATTGAA
391 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
28029 GTTTTTCCTTTT-CCTGGAAAT
456 GTTTTT-CTTTTGCCTGGAAAT
* * *
28050 CTTTTCTTCGCCATATTTTGCTTAAAATGAAAGTTCATCCTTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
28115 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* * *
28180 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTT
* * * *
28245 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACCA
* * *
28310 TAAATATAGTCTTCTTATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
* * *
28375 CCCACCAATCGTTGTAAAGTCTAAGTTCGTGCGTTAAATGAGACAAATATGGATTCTAGTAATGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGGGCCTCAAATGAGACAAATATGGATTCTAGTAATGA
* * * *
28440 TCTTCATTCTTTTTCTGGTAAAGCACTACAAACACATTCTGCTCTTTAGGAAAAAAGACATTGAA
391 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
*
28505 GTTTTTCTTTTGCTTGGAAAT
456 GTTTTTCTTTTGCCTGGAAAT
* * **
28526 CTTTTCTTCGCCCTATTTTCCTTAAAATTAATGTTCATCAGTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
* * *
28591 CCTAACAGTCTCCTTTCTTTTTAAGATTGGGAAGCTAAAACACATTGCCATTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
** * * * *
28656 ACATTGATTATTTGGTGTCTCACGAAAAGCTTTTCTTCGCGTCATTATTAATAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTT
* * * * *
28721 GTCTCTAAAATATGCCGAACATTAAAACTCAAACTAATCCTCATTCTTTTTAGATTTACGCACCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACCA
* * * *
28786 TAAACATAGTATTCTCATTAGCATACACGATATTGATGCTTTGG-TTCACAACAAAGGCTTTCTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
*
28850 CCCACCAATCGTTGTGAAGTCTAAGTTCGGGCCTCAAATGAGAC-AATATGGATTCTAGTAATGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGGGCCTCAAATGAGACAAATATGGATTCTAGTAATGA
28914 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
391 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
*
28979 GTTTTTCTTTTGCGTGGAAAT
456 GTTTTTCTTTTGCCTGGAAAT
* * *
29000 CATTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAACATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
* *
29065 CCTAATAGTCTCCTTTCTCTTCAAGATTGGGAAGCCAAAACACATTG-CTATTGTTAGGATACCC
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCT-TTGTTAGGATACCC
* * * *
29129 GACATTGAGGCTCTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTAATAGAATCAACGTT
130 GACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTT
* *
29194 TTTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATT-CTTATTAGATTTAGGCAC
195 TGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTT-TTAGATTTAGGCAC
* * *
29258 CATAAACATAGTCTTCTCATTAGCATACACGATATTGATGCTCTGGTTTCGCAACAAAGGTTTTT
259 CATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTT
* ** * * *
29323 TTCCCACCAATCGTTGTAAAGTCTAAGTTTGATCCTCAAATGAGACAAACACGGATTCTAGGAAT
324 TTCCCACCAATCGTTGTAAAGTCTAAGTTCGGGCCTCAAATGAGACAAATATGGATTCTAGTAAT
* * *
29388 GAACTTCGTTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTG
389 GATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTG
*
29453 AAGTTTTTCTTTTGCTTGGAAAT
454 AAGTTTTTCTTTTGCCTGGAAAT
* *
29476 CTTTTCTTCGCACTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCAATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
*
29541 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTG-CTATTGTTAGCATACCC
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCT-TTGTTAGGATACCC
*
29605 GACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTGATAGAATCAACGTT
130 GACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTT
* * * *
29670 TGTCTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTCATTCTTTTTAAATTTAGGCACC
195 TGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACC
* * * * *
29735 GTAAACATATTCTTCTCATTAGGATACACGATATTGATTCTCTGGTTTCGCAACAAAGGCGTTTT
260 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTT
* * *
29800 TCCCACCAATCATTGTAAAGTCTAAGTT-GGTGCCTCAAATGAGACAAACACGGATTCTAGTAAT
325 TCCCACCAATCGTTGTAAAGTCTAAGTTCGG-GCCTCAAATGAGACAAATATGGATTCTAGTAAT
* * * * *
29864 TAACTTCATTC--TTTCCTGATAAAGTACTATAAACACATTCTCTTCTTTAGGACAAAAGACATT
389 GATCTTCATTCTTTTTCC-GATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATT
*
29927 GAAGTTTTTCTTTTTCCTGGAAAT
453 GAAGTTTTTCTTTTGCCTGGAAAT
* * * *
29951 CTTTTCTTCGCCATATTTTGCTTAAAATGAACGTTCATCCCTTGAATAAGACAAGCATCGATTAT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
*
30016 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACATATTG-CTATTGTTAGGATACCC
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCT-TTGTTAGGATACCC
* * * * *
30080 GACATTGATGCTTTGGTGTCACGAGAAAAGCTTTTCTTCACGTCATTTTTAATAGAATCAACGTT
130 GACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTT
* * *
30145 CGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACC
195 TGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACC
* *
30210 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTCTGGTTTCGCAACAAAGGTTTTTT
260 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTT
** ** * *
30275 TCCCACCAATCGTTGTAAAGTCTAAGTTCGATCCTCAAATGAGACAAGCACGGATTCTAGGAATG
325 TCCCACCAATCGTTGTAAAGTCTAAGTTCGGGCCTCAAATGAGACAAATATGGATTCTAGTAATG
* * *
30340 AACTTCGTTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGA
390 ATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGA
30405 AGTTTTTCTTTTG-CTAGGAAAT
455 AGTTTTTCTTTTGCCT-GGAAAT
* *
30427 CTTTTCTTCGCTCTATTTTCCTT-AAATGAAAGTTCATCCCTTGAATAAGACAAGCATCAATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
* *
30491 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGTCAAAACACATTG-CTATTGTTAGGATAACC
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCT-TTGTTAGGATACCC
* *
30555 GACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCGTTTTTGATAGAATCAACGCT
130 GACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTT
* ** * * *
30620 GGTCTCTTAAATAAGCTAAACTTTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCAGC
195 TGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACC
*
30685 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG-TTCGCAACAAAGGCTTTCT
260 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTT
* *
30749 TCCCACCAATCGTTGTGAAGTCTAAGTTTGGGCCTCAAATGAGAC-AATATGGATTCTAGTAATG
325 TCCCACCAATCGTTGTAAAGTCTAAGTTCGGGCCTCAAATGAGACAAATATGGATTCTAGTAATG
30813 ATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGA
390 ATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGA
30878 AGTTTTTCTTTTGCCTGGAAAT
455 AGTTTTTCTTTTGCCTGGAAAT
* * *
30900 CTTTTCTTCGCCCTATTTTTCTTAAAATGAAAGTTCATCCCATGAATAAGACAAGCATCGTTTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
*
30965 CCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* * **
31030 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGTATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTT
* * * *
31095 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACCA
* * *
31160 TAAATATAGTCTTCTCATTAGGATACACGATACTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
* * *
31225 CCCACCAATCATTGTAAAGTCTAAGTTCGTGCGTCAAATGAGACAAATATGGATTCTAGTAATGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGGGCCTCAAATGAGACAAATATGGATTCTAGTAATGA
* *
31290 TCTTCATTCTTTTT-CGATAAACCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGAA
391 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
*
31354 GTTTTTCTTTTGCGTGGAAAT
456 GTTTTTCTTTTGCCTGGAAAT
* *
31375 CTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCAATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
* *
31440 CCT-ACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* * * **
31504 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTTGTATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTT
* * * *
31569 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACCA
* *
31634 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTT
31697 CTTTGCCATA
Statistics
Matches: 4718, Mismatches: 334, Indels: 44
0.93 0.07 0.01
Matches are distributed among these distances:
473 120 0.03
474 1330 0.28
475 1115 0.24
476 2142 0.45
477 11 0.00
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.35
Consensus pattern (476 bp):
CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCGTTTTTGATAGAATCAACGTTT
GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTTAGGCACCA
TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
CCCACCAATCGTTGTAAAGTCTAAGTTCGGGCCTCAAATGAGACAAATATGGATTCTAGTAATGA
TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
GTTTTTCTTTTGCCTGGAAAT
Found at i:27993 original size:950 final size:952
Alignment explanation
Indices: 26148--31696 Score: 8785
Period size: 950 Copynumber: 5.8 Consensus size: 952
26138 GCAATAAAGG
* * * *
26148 CTTTTCTTTGCCCTATTTTTCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCAATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
*
26213 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* * * *
26278 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTTGTATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGCTGTCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTTT
* *
26343 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTGAGGCACCA
* *
26408 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
* *
26473 CCCACCAATCGTTGTAAAGTCTAAGTTCG-TCCGTCAAATGAGACAAATATGGATTCTAGTAAAG
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGAGCC-TCAAATGAGACAAATATGGATTCTAGTAATG
* *
26537 ATCTTCATTCTTTTTCCGATAAACCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGA
390 ATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGA
*
26602 AGTTTTTCTTTTGCGTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTT
455 AGTTTTTCTTTTGCCTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTT
*
26667 GAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACAC
520 GAATAAGACAAGCATCAATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACAC
* * * * *
26732 ATTGCCTTTGTTAGGATACCCGACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATC
585 ATTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTC
* *
26797 GTTTTTGATAGAATCAACGTTTGTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTA
650 GTTTTTGATAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCA
* * * * *
26862 TTCCTTTTAGATTGAGGCCCCATAAATATAGTCTTCTCATTAGGATACACGTTATTGATGCTTTG
715 TTCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTG
*
26927 GTTTCGCAATAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGT-CCGTCAAATGAG
780 GTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCC-TCAAATGAG
* * *
26991 ACAAATATGGATTCTAGTAAAGATCTTCATTCTTTTTCCGATAAACCACTACAAACATATTCTCC
844 ACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCC
*
27056 TCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCGTGGAAAT
909 TCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAAT
* *
27100 CTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
*
27165 CCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* * * *
27230 ACATTGATGGTTTGGTGCCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGCTGTCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTTT
* * * *
27295 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCATTTAAATTTAGGCACCA
196 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTGAGGCACCA
* *
27360 TAAACATACTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTT-GCAACAAAGGCTTTCTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
* *
27424 CCCACCAATCGTTGTGAAGTCTAAGTTCGGGCCTCAAATGAGAC-AATATGGATTCTAGTAATGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGAGCCTCAAATGAGACAAATATGGATTCTAGTAATGA
* *
27488 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGTCATTCAA
391 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
* * * *
27553 GTTTTTCTTTTGCCTGGAAATCTTTTCTTCGCCCTATTTTTCTTAAAATTAATGTTCATCCTTTG
456 GTTTTTCTTTTGCCTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTG
* *
27618 AATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCTAAAACACA
521 AATAAGACAAGCATCAATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACA
27683 TTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCG
586 TTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCG
* * ** *
27748 TTTTTAATAGAATCAACATTTGTCTCTTAAATATTCCGAACGTTAATACTCAAACTAATCCTCAT
651 TTTTTGATAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCAT
27813 TCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG
716 TCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG
* * *
27878 TTTCGTAACAAAGGATTTTTTCCCACCAATCGTAGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC
781 TTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC
* * *
27943 AAATATGGATTCTAGTAATGAACTTCATTCTTTTCCCGATAAAGCACTACAAACACATTCTCCCC
846 AAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTC
28008 TTTAGGACAAAAGACATTGAAGTTTTTCCTTTT-CCTGGAAAT
911 TTTAGGACAAAAGACATTGAAGTTTTT-CTTTTGCCTGGAAAT
* * *
28050 CTTTTCTTCGCCATATTTTGCTTAAAATGAAAGTTCATCCTTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
28115 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* *
28180 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGCTGTCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTTT
* *
28245 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTGAGGCACCA
* * *
28310 TAAATATAGTCTTCTTATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
* * *
28375 CCCACCAATCGTTGTAAAGTCTAAGTTCGTGCGTTAAATGAGACAAATATGGATTCTAGTAATGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGAGCCTCAAATGAGACAAATATGGATTCTAGTAATGA
* * * *
28440 TCTTCATTCTTTTTCTGGTAAAGCACTACAAACACATTCTGCTCTTTAGGAAAAAAGACATTGAA
391 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
* * * **
28505 GTTTTTCTTTTGCTTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATTAATGTTCATCAGTTG
456 GTTTTTCTTTTGCCTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTG
* * *
28570 AATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTTAAGATTGGGAAGCTAAAACACA
521 AATAAGACAAGCATCAATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACA
** * * *
28635 TTGCCATTGTTAGGATACCCGACATTGATTATTTGGTGTCTCACGAAAAGCTTTTCTTCGCGTCA
586 TTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCG
* * * * *
28700 TTATTAATAGAATCAACGTTTGTCTCTAAAATATGCCGAACATTAAAACTCAAACTAATCCTCAT
651 TTTTTGATAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCAT
* * *
28765 TCTTTTTAGATTTACGCACCATAAACATAGTATTCTCATTAGCATACACGATATTGATGCTTTGG
716 TCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG
* * * *
28830 -TTCACAACAAAGGCTTTCTTCCCACCAATCGTTGTGAAGTCTAAGTTCGGGCCTCAAATGAGAC
781 TTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC
28894 -AATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTC
846 AAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTC
*
28958 TTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCGTGGAAAT
911 TTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAAT
* * *
29000 CATTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAACATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
* *
29065 CCTAATAGTCTCCTTTCTCTTCAAGATTGGGAAGCCAAAACACATTG-CTATTGTTAGGATACCC
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCT-TTGTTAGGATACCC
* * * * *
29129 GACATTGAGGCTCTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTAATAGAATCAACGTT
130 GACATTGATGCTTTGCTGTCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTT
* * * *
29194 TTTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATT-CTTATTAGATTTAGGCAC
195 TGTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTT-TTAGATTGAGGCAC
* * *
29258 CATAAACATAGTCTTCTCATTAGCATACACGATATTGATGCTCTGGTTTCGCAACAAAGGTTTTT
259 CATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTT
* * * * *
29323 TTCCCACCAATCGTTGTAAAGTCTAAGTTTGATCCTCAAATGAGACAAACACGGATTCTAGGAAT
324 TTCCCACCAATCGTTGTAAAGTCTAAGTTCGAGCCTCAAATGAGACAAATATGGATTCTAGTAAT
* * *
29388 GAACTTCGTTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTG
389 GATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTG
* *
29453 AAGTTTTTCTTTTGCTTGGAAATCTTTTCTTCGCACTATTTTCCTTAAAATGAAAGTTCATCCCT
454 AAGTTTTTCTTTTGCCTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCT
29518 TGAATAAGACAAGCATCAATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACA
519 TGAATAAGACAAGCATCAATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACA
* *
29583 CATTGCTATTGTTAGCATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGT
584 CATTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGT
* *
29648 CGTTTTTGATAGAATCAACGTTTGTCTCTTAAATAAGCTGAACTTTAATACTCAAACTAATCCTC
649 CGTTTTTGATAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTC
* * * * *
29713 ATTCTTTTTAAATTTAGGCACCGTAAACATATTCTTCTCATTAGGATACACGATATTGATTCTCT
714 ATTCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTT
* * *
29778 GGTTTCGCAACAAAGGCGTTTTTCCCACCAATCATTGTAAAGTCTAAGTTGGTGCCTCAAATGAG
779 GGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAG
* * * * * *
29843 ACAAACACGGATTCTAGTAATTAACTTCATTC--TTTCCTGATAAAGTACTATAAACACATTCTC
844 ACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCC-GATAAAGCACTACAAACACATTCTC
* *
29906 TTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTTCCTGGAAAT
908 CTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAAT
* * * *
29951 CTTTTCTTCGCCATATTTTGCTTAAAATGAACGTTCATCCCTTGAATAAGACAAGCATCGATTAT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
*
30016 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACATATTG-CTATTGTTAGGATACCC
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCT-TTGTTAGGATACCC
* * * * * *
30080 GACATTGATGCTTTGGTGTCACGAGAAAAGCTTTTCTTCACGTCATTTTTAATAGAATCAACGTT
130 GACATTGATGCTTTGCTGTCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTT
* * * * *
30145 CGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACC
195 TGTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTGAGGCACC
* *
30210 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTCTGGTTTCGCAACAAAGGTTTTTT
260 ATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTT
* ** * *
30275 TCCCACCAATCGTTGTAAAGTCTAAGTTCGATCCTCAAATGAGACAAGCACGGATTCTAGGAATG
325 TCCCACCAATCGTTGTAAAGTCTAAGTTCGAGCCTCAAATGAGACAAATATGGATTCTAGTAATG
* * *
30340 AACTTCGTTCTTTTCCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGA
390 ATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGA
*
30405 AGTTTTTCTTTTG-CTAGGAAATCTTTTCTTCGCTCTATTTTCCTT-AAATGAAAGTTCATCCCT
455 AGTTTTTCTTTTGCCT-GGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCT
*
30468 TGAATAAGACAAGCATCAATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGTCAAAACA
519 TGAATAAGACAAGCATCAATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACA
* *
30533 CATTGCTATTGTTAGGATAACCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGT
584 CATTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGT
* * ** *
30598 CGTTTTTGATAGAATCAACGCTGGTCTCTTAAATAAGCTAAACTTTAATACTCAAACTAATCCTC
649 CGTTTTTGATAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTC
*
30663 ATTCTTTTTAGATTTAGGCAGCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTT
714 ATTCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTT
* * * *
30728 GG-TTCGCAACAAAGGCTTTCTTCCCACCAATCGTTGTGAAGTCTAAGTTTGGGCCTCAAATGAG
779 GGTTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAG
30792 AC-AATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCC
844 ACAAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCC
30856 TCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAAT
909 TCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAAT
* * *
30900 CTTTTCTTCGCCCTATTTTTCTTAAAATGAAAGTTCATCCCATGAATAAGACAAGCATCGTTTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
*
30965 CCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* * *
31030 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGTATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGCTGTCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTTT
* *
31095 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTGAGGCACCA
* * *
31160 TAAATATAGTCTTCTCATTAGGATACACGATACTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
261 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
* * *
31225 CCCACCAATCATTGTAAAGTCTAAGTTCGTGCGTCAAATGAGACAAATATGGATTCTAGTAATGA
326 CCCACCAATCGTTGTAAAGTCTAAGTTCGAGCCTCAAATGAGACAAATATGGATTCTAGTAATGA
* *
31290 TCTTCATTCTTTTT-CGATAAACCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGAA
391 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
* *
31354 GTTTTTCTTTTGCGTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTG
456 GTTTTTCTTTTGCCTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTG
*
31419 AATAAGACAAGCATCAATTCTCCT-ACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACA
521 AATAAGACAAGCATCAATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACA
* * * * ****
31483 ATGCCTTTGTTAGGATACCCGACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTTGTATCG
586 TTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCG
* *
31548 TTTTTGATAGAATCAACGTTTGTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTAT
651 TTTTTGATAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCAT
* * * *
31613 TCCTTTTAGATTGAGGCCCCATAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG
716 TCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG
*
31678 TTTCGCAATAAAGGCTTTT
781 TTTCGCAACAAAGGCTTTT
31697 CTTTGCCATA
Statistics
Matches: 4242, Mismatches: 336, Indels: 41
0.92 0.07 0.01
Matches are distributed among these distances:
948 324 0.08
949 555 0.13
950 1898 0.45
951 766 0.18
952 699 0.16
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.35
Consensus pattern (952 bp):
CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
ACATTGATGCTTTGCTGTCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTTT
GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTGAGGCACCA
TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
CCCACCAATCGTTGTAAAGTCTAAGTTCGAGCCTCAAATGAGACAAATATGGATTCTAGTAATGA
TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
GTTTTTCTTTTGCCTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTG
AATAAGACAAGCATCAATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACA
TTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCACGTCG
TTTTTGATAGAATCAACGTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCAT
TCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG
TTTCGCAACAAAGGCTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC
AAATATGGATTCTAGTAATGATCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTC
TTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAAT
Found at i:31955 original size:318 final size:316
Alignment explanation
Indices: 31375--32016 Score: 1016
Period size: 318 Copynumber: 2.0 Consensus size: 316
31365 GCGTGGAAAT
* *
31375 CTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCAATTCT
1 CTTTTCTTCGCCATATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCAATTCT
*
31440 CCTACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCGA
66 CCTACAATCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCGA
* * * * *
31505 CATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTTGTATCGTTTTTGATAGAATCAACGTTTG
131 CATTGATGCTTTGCTGCCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTTTG
* * ** *
31570 TCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCAT
196 TCTATTAAATAAGCCGAACAATAATACTCAAACTAATCCTCATTCAATTTAGATTGAGGCACCAT
* ** *
31635 AAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGG
261 AAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCATTT-GCAACAAAGG
* * **
31692 CTTTTCTTTGCCATATTTTTCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCT
1 CTTTTCTTCGCCATATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCAATTCT
* *
31757 CCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCT-ACAATCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCG
* *
31822 ACATTGATGCTTTGGTGCCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTGATAGAATCAACGTTT
130 ACATTGATGCTTTGCTGCCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTTT
* *
31887 GTCTCTTAAATAAGCCGAACAATAATACTCAAACTAATCCTCATTCAATTTAGATTTAGGCACCA
195 GTCTATTAAATAAGCCGAACAATAATACTCAAACTAATCCTCATTCAATTTAGATTGAGGCACCA
31952 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCATTTGCAACAAAGG
260 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCATTTGCAACAAAGG
32009 C-TTTCTTC
1 CTTTTCTTC
32017 CCACCAATCG
Statistics
Matches: 296, Mismatches: 28, Indels: 3
0.91 0.09 0.01
Matches are distributed among these distances:
316 6 0.02
317 72 0.24
318 218 0.74
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (316 bp):
CTTTTCTTCGCCATATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCAATTCT
CCTACAATCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCGA
CATTGATGCTTTGCTGCCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTTTG
TCTATTAAATAAGCCGAACAATAATACTCAAACTAATCCTCATTCAATTTAGATTGAGGCACCAT
AAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCATTTGCAACAAAGG
Found at i:31992 original size:159 final size:158
Alignment explanation
Indices: 31492--31993 Score: 462
Period size: 159 Copynumber: 3.2 Consensus size: 158
31482 AATGCCTTTG
* * * * *
31492 TTAGGATACCCGACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTTGTATCGTTTTTGATA
1 TTAGGATACACGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTTGCATCATTTTTGATA
* * *
31557 GAATCAACGTTTGTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAG
66 GAATCAACGTTTGTCTCTTAAATAAGCCGAACAATAATACTCAAACTAATCCTCATT-CTTTTAG
* * *
31622 ATTGAGGCCCCATAAATATAGTCTTCTCA
130 ATTTAGGCACCATAAACATAGTCTTCTCA
* * * * * **
31651 TTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTCTTTGCCAT-ATTTTTCTT
1 TTAGGATACACGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTTG-CATCATTTTTGAT
* * * ** * * * ** * * *
31715 AAAATGAAAGTTCATCCCTTGAATAAGAC-AAGC-ATCGTTTCTCCTAAC-AAT-CTCCTTTCTT
65 AGAATCAACGTTTGTCTCTTAAATAAGCCGAA-CAAT-AATACT-CAAACTAATCCT-CATTCTT
* * * * * *
31776 TTCAAGA-TTGGGAAGCCAAAACACATTGCCTT-T-G
126 TT--AGATTTAGGCA-CCATAA-ACATAGTCTTCTCA
* * * *
31810 TTAGGATACCCGACATTGATGCTTTGGTGCCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTGATA
1 TTAGGATACACGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTTGCATCATTTTTGATA
*
31875 GAATCAACGTTTGTCTCTTAAATAAGCCGAACAATAATACTCAAACTAATCCTCATTCAATTTAG
66 GAATCAACGTTTGTCTCTTAAATAAGCCGAACAATAATACTCAAACTAATCCTCATTC-TTTTAG
31940 ATTTAGGCACCATAAACATAGTCTTCTCA
130 ATTTAGGCACCATAAACATAGTCTTCTCA
*
31969 TTAGGATACACGATATTGATGCTTT
1 TTAGGATACACGACATTGATGCTTT
31994 CATTTGCAAC
Statistics
Matches: 255, Mismatches: 70, Indels: 36
0.71 0.19 0.10
Matches are distributed among these distances:
157 8 0.03
158 25 0.10
159 191 0.75
160 24 0.09
161 7 0.03
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.36
Consensus pattern (158 bp):
TTAGGATACACGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTTGCATCATTTTTGATA
GAATCAACGTTTGTCTCTTAAATAAGCCGAACAATAATACTCAAACTAATCCTCATTCTTTTAGA
TTTAGGCACCATAAACATAGTCTTCTCA
Found at i:32463 original size:791 final size:792
Alignment explanation
Indices: 25354--32487 Score: 2616
Period size: 791 Copynumber: 9.0 Consensus size: 792
25344 TCCAGGAAAT
* * *
25354 CTTTTCTTCGCCATATTTTGCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCATATTTTTCTTAAAATGAAAGTTCATCCCATGAATAAGACAAGCATCGTTTCT
*
25419 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* * * *
25484 ACATTGATGCTTTGCTGTCTTAAGAAAATCTTTTCTTCGCATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGCTGCCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTTT
* * * ** *
25549 GCCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTATTAAATAAGCCGAACAATAATACTCAAACTAATCCTCATTCAATTTAGATTGAGGCACCA
* * ** * *
25614 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
261 TAAACATAGTCTTCTCATTAGGATACACGATACTGATGCTTTCATTTCGCAACAAAGGCTTTCTT
* * *
25679 CCCACCAATCGTTGTAAAGTCTAAGTTC-GTCCGTCAAATGAGACAAATATGGATTCTAGTAAAG
326 CCCACCAATCATTGTAAAGTCTAAGTTCGGGCC-TCAAATGAGACAAATATGGATTCTAGTAATG
*
25743 ATCTTCATTCTTTTTCCGATAAACCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGA
390 ATCTTCATTCTTTTT-CGATAAACCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGA
* *
25808 AGTTTTTCTTTTGCGTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTT
454 AGTTTTTCTTTTGCCTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTT
* *
25873 GAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACAC
519 GAATAAGACAAGCATCAATTCTCCT-ACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACAC
* * * *
25938 AATGCCTTTGTTAGGATACCCGACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTTGTATC
583 AATGCCATTGTTAGGATACCCGACATTGATGCTTTGCTGTCTCAAGAAAAGCTTTTCTTCGCATC
* * * *
26003 GTTTTTGATAGAATCAACGTTTGTCTATTAAAGAAGCCGAACATTAATACTCAAACTAATCCTTA
648 ATTTTTAATAGAATCAACGTTTGTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTCA
* * * *
26068 TTCCTTTTAGATTGAGGCCCCATAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTG
713 TTCCTTTTAGATTGAGGCACCATAAACATAGTCTTCTCATTAGCATACACGATATTGATGCTCTG
*
26133 GTTTCGCAATAAAGG
778 GTTTCGCAACAAAGG
* * * * **
26148 CTTTTCTTTGCCCTATTTTTCTTAAAATTAAAGTTCATCCCTTGAATAAGACAAGCATCAATTCT
1 CTTTTCTTCGCCATATTTTTCTTAAAATGAAAGTTCATCCCATGAATAAGACAAGCATCGTTTCT
* *
26213 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACAATGCCTTTGTTAGGATACCCG
66 CCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* * * * *
26278 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTTGTATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGCTGCCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTTT
* * ** *
26343 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTATTAAATAAGCCGAACAATAATACTCAAACTAATCCTCATTCAATTTAGATTGAGGCACCA
* * ** * *
26408 TAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
261 TAAACATAGTCTTCTCATTAGGATACACGATACTGATGCTTTCATTTCGCAACAAAGGCTTTCTT
* * *
26473 CCCACCAATCGTTGTAAAGTCTAAGTTC-GTCCGTCAAATGAGACAAATATGGATTCTAGTAAAG
326 CCCACCAATCATTGTAAAGTCTAAGTTCGGGCC-TCAAATGAGACAAATATGGATTCTAGTAATG
*
26537 ATCTTCATTCTTTTTCCGATAAACCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGA
390 ATCTTCATTCTTTTT-CGATAAACCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGA
*
26602 AGTTTTTCTTTTGCGTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTT
454 AGTTTTTCTTTTGCCTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTT
* *
26667 GAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACAC
519 GAATAAGACAAGCATCAATTCTCCT-ACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACAC
* * *
26732 ATTGCCTTTGTTAGGATACCCGACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATC
583 AATGCCATTGTTAGGATACCCGACATTGATGCTTTGCTGTCTCAAGAAAAGCTTTTCTTCGCATC
* * *
26797 GTTTTTGATAGAATCAACGTTTGTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTA
648 ATTTTTAATAGAATCAACGTTTGTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTCA
* * * * *
26862 TTCCTTTTAGATTGAGGCCCCATAAATATAGTCTTCTCATTAGGATACACGTTATTGATGCTTTG
713 TTCCTTTTAGATTGAGGCACCATAAACATAGTCTTCTCATTAGCATACACGATATTGATGCTCTG
*
26927 GTTTCGCAATAAAGG
778 GTTTCGCAACAAAGG
* ** * * ** * * ** * *
26942 CTTTT-TTC-CCACCAATCGTT-GTAAAGTCTAAGTTCGTCCGTCA--AATGAGACAAATATGGA
1 CTTTTCTTCGCCA--TATTTTTCTTAAAATGAAAGTTCATCC--CATGAATAAGACAAGCATCGT
** * * * * * * * *
27002 TTCTAGTAA-AGATCTTCATTCTTTTTC-CGA-T--AAACCACTACAAACATATTCTCCTCT-TT
62 TTCTCCTAACA-ATCTCCTTTC-TTTTCAAGATTGGGAAGC-C-A-AAACACATT-GCCTTTGTT
* *** * * * ** ** * * * ***
27061 AGGACAAAAGACATTGAAGTTTTTCT-TTTGCGTGGAAATCTTTTCTTCGC-CCTATTTTCCTTA
121 AGGATACCCGACATTGATGCTTTGCTGCCT-CAAGAAAAGCTTTTCTTCGCATC-ATTTTTGATA
* * * ** ** * * ** * * * *
27124 AAATTAAAGTTCATCCCTTGAATAAGAC-AAGC-ATCGTTTCTCCTAAC-AAT-CTCCTTTC-TT
184 GAATCAACGTTTGTCTATTAAATAAGCCGAA-CAAT-AATACT-CAAACTAATCCT-CATTCAAT
* * * * * * * * * **
27184 TTCAAGATTG-GGAAGCCAAAACACATTGCCTT-T-GTTAGGATACCCGACATTGATGGTTTGGT
245 TT--AGATTGAGGCA-CCATAA-ACATAGTCTTCTCATTAGGATACACGATACTGATGCTTTCAT
** * * * * ** ** * * * *
27246 GCCTCAAGAAAAGCTTTTCTTCGCGTC-ATTTTTGATAGAA-TC-AACGTT-TGTCTCTTAAATA
306 TTCGCAACAAAGGC-TTTCTTCCCACCAATCATTG-TA-AAGTCTAA-GTTCGGGC-CTCAAATG
* * * ** * * * ** ** * ** * * * *
27307 AGCCGAACATTAATACTCA--AACTAATCCTCATTCCATTTAAATTTAGGCACCATAAACATACT
366 AGACAAATATGGATTCT-AGTAA-TGATCTTCATTCTTTTTCGA-TAAACCACTACAAACACATT
* * * * * * * * ** *** * * *
27370 CTTCTCATTAGGATACACGATATTGATG-CTTTGGTTTG-CAACAAAGGC-TTTCTTCCCACCAA
428 CTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAA-TCTTTTCTTCGC-CCTA
* * * * ** *** ** * * ** ** *
27432 TCGTT--GTGAAGTCTAAGTTCGGGCCTCAAATGAGACAA-TATGGATTCTAGTA-ATGATCTTC
491 T-TTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCAATTCTCCTACA-G-TCTCC
* * * * * *** * *
27493 ATTCTTTTTC-CGA-T--AAAGCACTACAAACAC-ATTCTCCTCT-TTAGGACAAAAGTCATTCA
553 ATTC-TTTTCAAGATTGGGAAGC-C-A-AAACACAATGC-CAT-TGTTAGGATACCCGACATTGA
* * * * ** * * * ** * * * **
27552 AGTTTTTCT-TTTGCCTGGAAATCTTTTCTTCGC-CCTATTTTTCTTAAAATTAATGTTCATCCT
612 TGCTTTGCTGTCT-CAAGAAAAGCTTTTCTTCGCATC-ATTTTTAATAGAATCAACGTTTGT-CT
* * ** * * * * * * *
27615 -TTGAATAAGAC-AAGCATCGATTCTCCTAAC-AGT-CTCCTTTCTTTTCAAGATTG-GGAAGCT
674 ATTAAATAAGCCGAA-CATTAATACT-CAAACTAATCCTCATTCCTTTT--AGATTGAGGCA-CC
* * * * * * * * * * * * *
27675 AAAACACATTGCCAT-T-GTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAG
734 ATAA-ACATAGTCTTCTCATTAGCATACACGATATTGATGCTCTGGTTTCGCAACAAAGG
* * * ** * * ** * * * ** * *
27733 CTTTTCTTC-ACGTCGTTTTTAATAGAATCAACA-TTTGTCTCTTAAAT-ATTC-CG-AACGTTA
1 CTTTTCTTCGCCAT-ATTTTTCTTAAAATGAA-AGTTCATCCCATGAATAAGACAAGCATCGTT-
* * * * * * * * *
27793 ATACT-CAAACTAATC-CTCATTCTTTT-TAGATTTAGGCA-CCATAA-ACATAGTCTTCTCATT
63 -T-CTCCTAAC-AATCTC-CTTTCTTTTCAAGA-TTGGGAAGCCAAAACACATTGCCTT-T-GTT
* * * * * * * * * * * **
27853 AGGATACACGATATTGATGCTTTGGTTTCGT-AACAAAGGATTTT-TTCCCACCAATCGT-AGTA
121 AGGATACCCGACATTGATGCTTT-GCTGCCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGA-TA
* * * * * * * *
27915 -AAGTCTAA-GTTCGTGC-CTCAAATGAGAC-AA-ATATGGATTCT-AGTAA-TGAA-CTTCATT
184 GAA-TC-AACGTTTGT-CTATTAAATAAGCCGAACA-AT-AATACTCA--AACT-AATCCTCATT
* * * * * * * * * * * * * * * * * *
27972 C-TTTTCCCGA-TAAAGCACTACAAACACATTCTCCCCTTTAGGACAAAAGACATTGAAGTTTTT
241 CAATTT--AGATTGAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATACTGATG-CTTT
* *** * * * * ** ** **
28035 CCTTTTC-CTGGAAA-TCTTTTCTTCGCCA--TAT-TTTGCTTAAAATGAAAGTTC-ATCCTTTG
303 -CATTTCGCAACAAAGGC-TTTCTTC-CCACCAATCATTG--TAAAGTCTAAGTTCGGGCC-TCA
* ** * ** * * * * *
28094 AATAAGACAAGCATCGATTCTCCTAA-CAGTCTCCTTTC-TTTTCAAGATTGGGAAGC-C-A-AA
362 AATGAGACAAATATGGATTCTAGTAATGA-TCTTCATTCTTTTTC--GA-T--AAACCACTACAA
* * * *** * * * ** * *
28154 ACACATT-GCCTTTGTTAGGATACCCGACATTGATGCTTTGCTGTCTT--AAGAAAAGCTTTTCT
421 ACACATTCTCCTCT-TTAGGACAAAAGACATTGAAGTTTTTCT-T-TTGCCTGGAAATCTTTTCT
* ** * * * ** ** * * * * **
28216 TCGCATCGT-TTTT-GATAGAATCAACGTTTGTCTATTAAATAAGCCGAA-CATTAATACTCAAA
483 TCGC--CCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGAC-AAGCATCAATTCTCCTA
* * ** * * * * *
28278 CTAATC-CTTATTCCTTTT--AGATTGAGG-CCCCATAAATATAGT-CTTC-TTATTAGGATACA
545 C-AGTCTC-CATT-CTTTTCAAGATTG-GGAAGCCA-AAACACAATGC--CATTGTTAGGATACC
* * * * * * * * *
28337 CGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTT-TTCCCACCAATCGTTGTAA-AG--TCTA
603 CGACATTGATGCTTTGCTGTCTCAAGAAAAGCTTTTCTTCGCATC-AT--TTTTAATAGAATC-A
* * * * * * ** * * * * * *
28398 A-GTTCGTGC-GTTAAATGAGACAAATATGGATTCT-AGTAA-TGATCTTCATTCTTTTTCTG-G
664 ACGTTTGT-CTATTAAATAAGCCGAACATTAATACTCA--AACTAATCCTCATTCCTTTT-AGAT
* * * * * * * * * * * * * * * * ** * ***
28458 TAAAGCACTACAAACACATTCTGCTCTTTAGGAAAAAAGACATTGAAGTTTTTCTTTTGCTTGGA
725 TGAGGCACCATAAACATAGTCTTCTCATTAGCATACACGATATTGATGCTCTGGTTTCGC-AACA
*
28523 AA-T
789 AAGG
* * * * *** *
28526 CTTTTCTTCGCCCTATTTTCCTTAAAATTAATGTTCATCAGTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCATATTTTTCTTAAAATGAAAGTTCATCCCATGAATAAGACAAGCATCGTTTCT
* * * *
28591 CCTAACAGTCTCCTTTCTTTTTAAGATTGGGAAGCTAAAACACATTGCCATTGTTAGGATACCCG
66 CCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
** * * * * * *
28656 ACATTGATTATTTGGTGTCTCACGAAAAGCTTTTCTTCGCGTCATTATTAATAGAATCAACGTTT
131 ACATTGATGCTTTGCTGCCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTTT
* * * * * ** * *
28721 GTCTCTAAAATATGCCGAACATTAAAACTCAAACTAATCCTCATTCTTTTTAGATTTACGCACCA
196 GTCTATTAAATAAGCCGAACAATAATACTCAAACTAATCCTCATTCAATTTAGATTGAGGCACCA
* * * ** *
28786 TAAACATAGTATTCTCATTAGCATACACGATATTGATGCTTT-GGTTCACAACAAAGGCTTTCTT
261 TAAACATAGTCTTCTCATTAGGATACACGATACTGATGCTTTCATTTCGCAACAAAGGCTTTCTT
* *
28850 CCCACCAATCGTTGTGAAGTCTAAGTTCGGGCCTCAAATGAGAC-AATATGGATTCTAGTAATGA
326 CCCACCAATCATTGTAAAGTCTAAGTTCGGGCCTCAAATGAGACAAATATGGATTCTAGTAATGA
*
28914 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
391 TCTTCATTCTTTTT-CGATAAACCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
* * *
28979 GTTTTTCTTTTGCGTGGAAATCATTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTG
455 GTTTTTCTTTTGCCTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTG
* * * * *
29044 AATAAGACAAACATCGATTCTCCTAATAGTCTCCTTTCTCTTCAAGATTGGGAAGCCAAAACACA
520 AATAAGACAAGCATCAATTCTCCT-ACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACA
* * * * * *
29109 TTGCTATTGTTAGGATACCCGACATTGAGGCTCTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCA
584 ATGCCATTGTTAGGATACCCGACATTGATGCTTTGCTGTCTCAAGAAAAGCTTTTCTTCGCATCA
* * *
29174 TTTTTAATAGAATCAACGTTTTTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCAT
649 TTTTTAATAGAATCAACGTTTGTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTCAT
*
29239 T-CTTATTAGATTTAGGCACCATAAACATAGTCTTCTCATTAGCATACACGATATTGATGCTCTG
714 TCCTT-TTAGATTGAGGCACCATAAACATAGTCTTCTCATTAGCATACACGATATTGATGCTCTG
29303 GTTTCGCAACAAAGG
778 GTTTCGCAACAAAGG
* * ** * * ** * * *
29318 -TTTTTTTC-CCACCAATCGTT-GTAAAGTCTAAGTTTGATCCTCA--AATGAGACAAACA-CGG
1 CTTTTCTTCGCCA--TATTTTTCTTAAAATGAAAG-TTCATCC-CATGAATAAGACAAGCATC-G
* *** * * * ** * * *
29377 ATTCTAGGAATGAA-CTTCGTTCTTTTCCCGA-T--AAAGCACTACAAACACATTCTCCTCT-TT
61 TTTCTCCTAA-CAATCTCCTTTCTTTTCAAGATTGGGAAGC-C-A-AAACACATT-GCCTTTGTT
* *** * * * ** ** * * ***
29437 AGGACAAAAGACATTGAAGTTTTTCT-TTTGCTTGGAAATCTTTTCTTCGCA-CTATTTTCCTTA
121 AGGATACCCGACATTGATGCTTTGCTGCCT-CAAGAAAAGCTTTTCTTCGCATC-ATTTTTGATA
* * * ** ** * * * * * * *
29500 AAATGAAAGTTCATCCCTTGAATAAGAC-AAGC-ATCAATTCTCCTAAC-AGT-CTCCTTTC-TT
184 GAATCAACGTTTGTCTATTAAATAAGCCGAA-CAAT-AATACT-CAAACTAATCCT-CATTCAAT
* * * * * * * * **
29560 TTCAAGATTG-GGAAGCCA-AAACACATTGCTAT-T-GTTAGCATACCCGACATTGATGCTTTGG
245 TT--AGATTGAGGCA-CCATAAACATAGT-CT-TCTCATTAGGATACACGATACTGATGCTTTCA
* * * * * ** * ** * * *
29621 TGTCTCAAGAAAAGCTTTTCTTCACGTC-GTTTTTGATAGAA-TC-AACGTT-TGTCTCTTAAAT
305 TTTCGCAACAAAGGC-TTTCTTCCCACCAATCATTG-TA-AAGTCTAA-GTTCGGGC-CTCAAAT
* * ** * * * ** * ** *** *
29682 AAG-CTGAACT-TTAATACTCA--AACTAATCCTCATTCTTTTTAAATTTAGGCACCGTAAACAT
365 GAGAC--AAATATGGATTCT-AGTAA-TGATCTTCATTCTTTTTCGA-TAAACCACTACAAACAC
* * * * * * * *** * * *
29743 ATTCTTCTCATTAGGATACACGATATTG-A--TTCTCTGGTTT-CGCAACAAAGGCGTTT-TTCC
425 ATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCT--TTTGC-CTGGAAA-TCTTTTCTTCG
* * * * ** ** * ** * * * ** *
29803 CACCAATCATT--GTAAAGTCTAAGTTGGTGCCTCAAATGAGACAAACA-CGGATTCTAGTA-AT
486 C-CCTAT-TTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATC-AATTCTCCTACAG
* ** *** * * * * * ***
29864 TAACTTCATTC-TTTCCTGATAAAGTA-CTATAAACAC-ATTCTC-TTCTTTAGGACAAAAGACA
548 T--CTCCATTCTTTTCAAGATTGGGAAGCCA-AAACACAATGC-CATT-GTTAGGATACCCGACA
* * * * * ** * * *** * * **
29925 TTGAAGTTTTTCTTTTTCCTGGAAATCTTTTCTTCGCCAT-ATTTTGCTTAAAATGAACGTTCAT
608 TTGATGCTTTGCTGTCTCAAGAAAAGCTTTTCTTCG-CATCATTTTTAATAGAATCAACGTTTGT
** * * * * * * * * *
29989 CCCTTGAATAAGAC-AAGCATCGATTA-TCCTAAC-AGT-CTCCTTTCTTTTCAAGATTG-GGAA
672 CTATTAAATAAGCCGAA-CAT-TAATACT-CAAACTAATCCTCATTCCTTTT--AGATTGAGGCA
* * * * * * * * * * *
30049 GCCA-AAACATATTGCTAT-T-GTTAGGATACCCGACATTGATGCTTTGGTGTCACGAGAAAAG
732 -CCATAAACATAGT-CT-TCTCATTAGCATACACGATATTGATGCTCTGGTTTCGCAACAAAGG
* * ** * * * * * * * * * *** *
30110 CTTTTCTTC-ACGTCATTTTTAATAGAATCAACGTTCGTCTCTTAAATATGCCGAA-CATTAATA
1 CTTTTCTTCGCCAT-ATTTTTCTTAAAATGAAAGTTCATCCCATGAATAAGAC-AAGCATCGTTT
* * * * * * * * *
30173 CT-CAAACTAATC-CTCATTCTTTT-TAGATTTAGGCA-CCATAA-ACATAGTCTTCTCATTAGG
64 CTCCTAAC-AATCTC-CTTTCTTTTCAAGA-TTGGGAAGCCAAAACACATTGCCTT-T-GTTAGG
* * * * ** * * * * * * **
30233 ATACACGATATTGATGCTCTGGTTTCGCAA-CAAAGGTTTTTTTCCCACCAATCGTTG-TA-AAG
124 ATACCCGACATTGATGCTTTGCTGCCTCAAGAAAAGCTTTTCTTCGCATC-ATTTTTGATAGAA-
* * * * * *** * * * *
30295 TCTAA-GTTCGATC-CTCAAATGAGAC-AAGCACGGATTCT-AGGAA-TGAA-CTTCGTTC-TTT
187 TC-AACGTTTG-TCTATTAAATAAGCCGAA-CAATAATACTCA--AACT-AATCCTCATTCAATT
* * * * * * * * * * * * * * * *
30353 TCCCGA-TAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTC-TTT
246 T--AGATTGAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATACTGATG-CTTTCATTT
* ** * * * * * * ** *** ** *
30416 TGCTAGGAAA-TCTTTTCTTCGC-TCTAT-TTTCCTTAAA-TGAAAGTTCATCCCTTGAATAAGA
308 CGC-AACAAAGGC-TTTCTTCCCACCAATCATT--GTAAAGTCTAAGTTCGGGCCTCAAATGAGA
** ** ** * * * ***** *
30477 CAAGCATCAATTCTCCTAA-CAGTCTCCTTTC-TTTTCAAGATTGGGAAGT-CAAAACACATTGC
369 CAAATATGGATTCTAGTAATGA-TCTTCATTCTTTTTC--GATAAACCACTAC-AAACACATT-C
* * ** * * ** * ** * * * *
30539 T-AT-TGTTAGGATAACCGACATTGATGCTTTGGTGTCT-CAAGAAAAGCTTTTCTTCACGTCGT
429 TCCTCT-TTAGGACAAAAGACATTGAAGTTTTTCT-TTTGCCTGGAAATCTTTTCTT--CGCCCT
** * * * * ** * * * * * * ** *
30601 -TTTT-GATAGAATCAACGCTGGTCTCTTAAATAAG-CTAAACTTTAATACTCAAACTAATC-CT
490 ATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGAC-AAGCATCAATTCTCCTAC-AGTCTC-
* * * * * ** * *
30662 CATTCTTTT-TAGATTTAGGCAG-CATAAACATAGT-CTTC-TCATTAGGATACACGATATTGAT
552 CATTCTTTTCAAGA-TTGGGAAGCCA-AAACACAATGC--CATTGTTAGGATACCCGACATTGAT
* * * * * * ** * *
30723 GCTTTGGT-TCGCAACAAAGGC-TTTCTTCCCACCAATCGTT-GT-GAAGTCTAA-GTTTGGGC-
613 GCTTTGCTGTCTCAAGAAAAGCTTTTCTTCGCATC-ATTTTTAATAGAA-TC-AACGTTT-GTCT
* * * * * ** * * * * * * * * *
30782 CTCAAATGAGAC-AATATGGATTCT-AGTAA-TGATCTTCATTCTTTTTCCGA-TAAAGCACTAC
674 ATTAAATAAGCCGAACATTAATACTCA--AACTAATCCTCATTCCTTTT-AGATTGAGGCACCAT
* * * * * * * * * * * * ** * *** *
30843 AAACACATTCTCCTCTTTAGGACAAAAGACATTGAAGTTTTTCTTTTGCCTGGAAA-T
736 AAACATAGTCTTCTCATTAGCATACACGATATTGATGCTCTGGTTTCG-CAACAAAGG
*
30900 CTTTTCTTCGCCCTATTTTTCTTAAAATGAAAGTTCATCCCATGAATAAGACAAGCATCGTTTCT
1 CTTTTCTTCGCCATATTTTTCTTAAAATGAAAGTTCATCCCATGAATAAGACAAGCATCGTTTCT
30965 CCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* * * *
31030 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGTATCGTTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGCTGCCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTTT
* * ** *
31095 GTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTCCTTTTAGATTGAGGCCCCA
196 GTCTATTAAATAAGCCGAACAATAATACTCAAACTAATCCTCATTCAATTTAGATTGAGGCACCA
* ** * *
31160 TAAATATAGTCTTCTCATTAGGATACACGATACTGATGCTTTGGTTTCGCAATAAAGGCTTTTTT
261 TAAACATAGTCTTCTCATTAGGATACACGATACTGATGCTTTCATTTCGCAACAAAGGCTTTCTT
* *
31225 CCCACCAATCATTGTAAAGTCTAAGTTCGTGCGTCAAATGAGACAAATATGGATTCTAGTAATGA
326 CCCACCAATCATTGTAAAGTCTAAGTTCGGGCCTCAAATGAGACAAATATGGATTCTAGTAATGA
*
31290 TCTTCATTCTTTTTCGATAAACCACTACAAACATATTCTCCTCTTTAGGACAAAAGACATTGAAG
391 TCTTCATTCTTTTTCGATAAACCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAG
* *
31355 TTTTTCTTTTGCGTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATTAAAGTTCATCCCTTGA
456 TTTTTCTTTTGCCTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGA
31420 ATAAGACAAGCATCAATTCTCCTACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACAAT
521 ATAAGACAAGCATCAATTCTCCTACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACAAT
* * * * *
31485 GCCTTTGTTAGGATACCCGACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTTGTATCGTT
586 GCCATTGTTAGGATACCCGACATTGATGCTTTGCTGTCTCAAGAAAAGCTTTTCTTCGCATCATT
* *
31550 TTTGATAGAATCAACGTTTGTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTC
651 TTTAATAGAATCAACGTTTGTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTC
* * * *
31615 CTTTTAGATTGAGGCCCCATAAATATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTT
716 CTTTTAGATTGAGGCACCATAAACATAGTCTTCTCATTAGCATACACGATATTGATGCTCTGGTT
*
31680 TCGCAATAAAGG
781 TCGCAACAAAGG
* *
31692 CTTTTCTTTGCCATATTTTTCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCT
1 CTTTTCTTCGCCATATTTTTCTTAAAATGAAAGTTCATCCCATGAATAAGACAAGCATCGTTTCT
31757 CCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
* *
31822 ACATTGATGCTTTGGTGCCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGCTGCCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTTT
* *
31887 GTCTCTTAAATAAGCCGAACAATAATACTCAAACTAATCCTCATTCAATTTAGATTTAGGCACCA
196 GTCTATTAAATAAGCCGAACAATAATACTCAAACTAATCCTCATTCAATTTAGATTGAGGCACCA
*
31952 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCATTT-GCAACAAAGGCTTTCTT
261 TAAACATAGTCTTCTCATTAGGATACACGATACTGATGCTTTCATTTCGCAACAAAGGCTTTCTT
* * *
32016 CCCACCAATCGTTGTGAGGTCTAAGTTCGGGCCTCAAATGAGAC-AATATGGATTCTAGTAATGA
326 CCCACCAATCATTGTAAAGTCTAAGTTCGGGCCTCAAATGAGACAAATATGGATTCTAGTAATGA
*
32080 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGAC-AAAGACATTGAA
391 TCTTCATTCTTTTT-CGATAAACCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAA
* * *
32144 GTTTTTCTTTTGCCTGTAAATCTTTTCTTCGCCCTATTTTTCTTAGAATGAAAGTTCATCCCTTG
455 GTTTTTCTTTTGCCTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTG
* * *
32209 AATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCTAAAACACA
520 AATAAGACAAGCATCAATTCTCCT-ACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACA
* * *
32274 TTGCCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCA
584 ATGCCATTGTTAGGATACCCGACATTGATGCTTTGCTGTCTCAAGAAAAGCTTTTCTTCGCATCA
* *
32339 TTTTTAATAGAATCAACGTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCAT
649 TTTTTAATAGAATCAACGTTTGTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTCAT
* * **
32404 TCTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTTTCATACACGATATTGATGCTCTGG
714 TCCTTTTAGATTGAGGCACCATAAACATAGTCTTCTCATTAGCATACACGATATTGATGCTCTGG
32469 TTTCGCAACAAAGG
779 TTTCGCAACAAAGG
*
32483 TTTTT
1 CTTTT
32488 TTCCCACCAA
Statistics
Matches: 4639, Mismatches: 1320, Indels: 765
0.69 0.20 0.11
Matches are distributed among these distances:
788 17 0.00
789 91 0.02
790 483 0.10
791 1237 0.27
792 1022 0.22
793 590 0.13
794 1143 0.25
795 45 0.01
796 11 0.00
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.35
Consensus pattern (792 bp):
CTTTTCTTCGCCATATTTTTCTTAAAATGAAAGTTCATCCCATGAATAAGACAAGCATCGTTTCT
CCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
ACATTGATGCTTTGCTGCCTCAAGAAAAGCTTTTCTTCGCATCATTTTTGATAGAATCAACGTTT
GTCTATTAAATAAGCCGAACAATAATACTCAAACTAATCCTCATTCAATTTAGATTGAGGCACCA
TAAACATAGTCTTCTCATTAGGATACACGATACTGATGCTTTCATTTCGCAACAAAGGCTTTCTT
CCCACCAATCATTGTAAAGTCTAAGTTCGGGCCTCAAATGAGACAAATATGGATTCTAGTAATGA
TCTTCATTCTTTTTCGATAAACCACTACAAACACATTCTCCTCTTTAGGACAAAAGACATTGAAG
TTTTTCTTTTGCCTGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGA
ATAAGACAAGCATCAATTCTCCTACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACAAT
GCCATTGTTAGGATACCCGACATTGATGCTTTGCTGTCTCAAGAAAAGCTTTTCTTCGCATCATT
TTTAATAGAATCAACGTTTGTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTC
CTTTTAGATTGAGGCACCATAAACATAGTCTTCTCATTAGCATACACGATATTGATGCTCTGGTT
TCGCAACAAAGG
Found at i:33182 original size:950 final size:947
Alignment explanation
Indices: 31692--33424 Score: 2778
Period size: 950 Copynumber: 1.8 Consensus size: 947
31682 GCAATAAAGG
* *
31692 CTTTTCTTTGCCATATTTTTCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCT
1 CTTTTCTTCGCCATATTTTTCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
*
31757 CCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCATTGTTAGGATACCCG
* *
31822 ACATTGATGCTTTGGTGCCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTGATAGAATCAACGTTT
131 ACATTGATGATTTGGTGCCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTAATAGAATCAACGTTT
* * *
31887 GTCTCTTAAATAAGCCGAACAATAATACTCAAACTAATCCTCATTCAATTTAGATTTAGGCACCA
196 GTCTCTAAAATAAGCCGAACAATAAAACTCAAACTAATCCTCATTCAATTTAGATTGAGGCACCA
*
31952 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCATTTGCAACAAAGGCTTTCTTC
261 TAAACATAGTCTTCCCATTAGGATACACGATATTGATGCTTTCATTTGCAACAAAGGCTTTCTTC
* * *
32017 CCACCAATCGTTGTGAGGTCTAAGTTCGGGCCTCAAATGAGACAATATGGATTCTAGTAATGATC
326 CCACCAATCGTAGTAAAGTCTAAGTTCGGGCCTCAAATGAGACAATATGGATTCTAGTAATGATC
* *
32082 TTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGACAAAGACATTGAAGTT
391 TTCATACTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGAAAAAGACATTGAAGTT
* * *
32147 TTTCTTTTGCCTGTAAATCTTTTCTTCGCCCTATTTTTCTTAGAATGAAAGTTCATCCCTTGAAT
456 TTTCTTTTGCCTGAAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAAT
*
32212 AAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCTAAAACACATTG
521 AAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTG
* *
32277 CCATTGTTAGGATACCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTT
586 CCATTGTTAGGATACCCGACATTGATGCTTTGCTGTCTCAAGAAAAGCTTTTCTTCGCATCATTT
* *
32342 T-TAATAGAATCAACGTTTGTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCA-TT
651 TGT--TAGAATCAACG-TTGTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTT
* * * * **
32405 CTTTTTAGATTTAGGCACCATAAACATAGTCTTCTCATTTTCATACACGATATTGATGCTCTGGT
713 CCTTTTAGATTGAGGCACCATAAACATAGACTTCCCATTAGCATACACGATATTGATGCTCTGGT
32470 TTCGCAACAAAGGTTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCGTCAAATGAGACA
778 TTCGCAACAAAGGTTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCGTCAAATGAGACA
32535 AATATGGATTCTAGTAATGATCTTCATTCTTTTTCTGGTAAAGCACTACAAACACATTCTGCTCT
843 AATATGGATTCTAGTAATGATCTTCATTCTTTTTCTGGTAAAGCACTACAAACACATTCTGCTCT
32600 TTAGGAAAAAAGACACTGAAGTTTTCTTTTGCTTGAAAAT
908 TTAGGAAAAAAGACACTGAAGTTTTCTTTTGCTTGAAAAT
* * *
32640 CTTTTCTTCGCCCTATTTTTCCTTAAAATTAAATGTTCATCCGTTGAATAAGACAAGCATCGATT
1 CTTTTCTTCGCCATATTTTT-CTTAAAATGAAA-GTTCATCCCTTGAATAAGACAAGCATCGATT
* *
32705 CTCCTAACAGTCTCCTTTCTTTTTAAGATTAGGGAA-CCTAAAACACATTGCCATTGTTAGGATA
64 CTCCTAACAATCTCCTTTCTTTTCAAGATT-GGGAAGCC-AAAACACATTGCCATTGTTAGGATA
*
32769 CCCGACA-TGAT-ATTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTAATAGAATCAAC
127 CCCGACATTGATGATTTGGTGCCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTAATAGAATCAAC
* * * **
32832 GTTTGTCTCTAAAATATGCCGAACATTAAAACTCAAACTAATCCTTATTCCTTTTAGATTGAGGC
192 GTTTGTCTCTAAAATAAGCCGAACAATAAAACTCAAACTAATCCTCATTCAATTTAGATTGAGGC
* * ** *
32897 CCCATAAATATAGTCTTCCCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTT
257 ACCATAAACATAGTCTTCCCATTAGGATACACGATATTGATGCTTTCATTT-GCAACAAAGGCTT
* * *
32962 TTTTCCCACCAATCGTAGTAAAGTCTAAGTT-GTGCGTCAAATGAGACAAATATGGATTCTAGTA
321 TCTTCCCACCAATCGTAGTAAAGTCTAAGTTCGGGCCTCAAATGAGAC-AATATGGATTCTAGTA
* *
33026 ATGATCTTCATACTTTTTCTGGTAAAGCACTACAAACACATTCTCCTCTTTAGGAAAAAAGACAT
385 ATGATCTTCATACTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGG-AAAAAGACAT
* * *
33091 TGAAGTTTTTC-TTTGCTTGAAAATCTTTTCTTCGCCCTATTTTCCTTAAAATTAATGTTCATCC
449 TGAAGTTTTTCTTTTGCCTGAAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCC
33155 CTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAA
514 CTTGAATAAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAA
* *
33220 CACATTGCCTTTGTTAGGATACCCGACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGC
579 CACATTGCCATTGTTAGGATACCCGACATTGATGCTTTGCTGTCTCAAGAAAAGCTTTTCTTCGC
* * *
33285 ATCGTTTTGTTAGAATCAACGTTGTTTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTT
644 ATCATTTTGTTAGAATCAACGTTGTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTC
* * * *
33350 ATTTCCTTTTAGATTGAGGCCCCATAAATATAGACTTCCCATTAGGATACACGATATTGATGCTT
709 ATTTCCTTTTAGATTGAGGCACCATAAACATAGACTTCCCATTAGCATACACGATATTGATGCTC
33415 TGGTTTCGCA
774 TGGTTTCGCA
33425 GTAAAGGCTT
Statistics
Matches: 715, Mismatches: 61, Indels: 17
0.90 0.08 0.02
Matches are distributed among these distances:
948 59 0.08
949 251 0.35
950 348 0.49
951 57 0.08
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (947 bp):
CTTTTCTTCGCCATATTTTTCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
CCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCATTGTTAGGATACCCG
ACATTGATGATTTGGTGCCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTAATAGAATCAACGTTT
GTCTCTAAAATAAGCCGAACAATAAAACTCAAACTAATCCTCATTCAATTTAGATTGAGGCACCA
TAAACATAGTCTTCCCATTAGGATACACGATATTGATGCTTTCATTTGCAACAAAGGCTTTCTTC
CCACCAATCGTAGTAAAGTCTAAGTTCGGGCCTCAAATGAGACAATATGGATTCTAGTAATGATC
TTCATACTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGGAAAAAGACATTGAAGTT
TTTCTTTTGCCTGAAAATCTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAAT
AAGACAAGCATCGATTCTCCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTG
CCATTGTTAGGATACCCGACATTGATGCTTTGCTGTCTCAAGAAAAGCTTTTCTTCGCATCATTT
TGTTAGAATCAACGTTGTCTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTTCCT
TTTAGATTGAGGCACCATAAACATAGACTTCCCATTAGCATACACGATATTGATGCTCTGGTTTC
GCAACAAAGGTTTTTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCGTCAAATGAGACAAAT
ATGGATTCTAGTAATGATCTTCATTCTTTTTCTGGTAAAGCACTACAAACACATTCTGCTCTTTA
GGAAAAAAGACACTGAAGTTTTCTTTTGCTTGAAAAT
Found at i:33419 original size:473 final size:475
Alignment explanation
Indices: 31692--33436 Score: 2738
Period size: 473 Copynumber: 3.7 Consensus size: 475
31682 GCAATAAAGG
* * * *
31692 CTTTTCTTTGCCATATTTTTCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGTTTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
* *
31757 CCTAACAATCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCATTGTTAGGATACCCG
*
31822 ACATTGATGCTTTGGTGCCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTGATAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTT-ATAGAATCAACGTTT
* ** *
31887 GTCTCTTAAATAAGCCGAACAATAATACTCAAACTAATCCTCATTCAATTTAGATTTAGGCACCA
195 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTGAGGCACCA
* ** *
31952 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTCATTT-GCAACAAAGGCTTTCTT
260 TAAACATAGTCTTCCCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
* * * *
32016 CCCACCAATCGTTGTGAGGTCTAAGTTCGGGCCTCAAATGAGAC-AATATGGATTCTAGTAATGA
325 CCCACCAATCGTTGTAAAGTCTAAGTTCGTGCGTCAAATGAGACAAATATGGATTCTAGTAATGA
* * *
32080 TCTTCATTCTTTTTCCGATAAAGCACTACAAACACATTCTCCTCTTTAGG-ACAAAGACATTGAA
390 TCTTCATTCTTTTTCTGGTAAAGCACTACAAACACATTCTCCTCTTTAGGAAAAAAGACATTGAA
* *
32144 GTTTTTCTTTTGCCTGTAAAT
455 GTTTTTCTTTTGCTTGAAAAT
* *
32165 CTTTTCTTCGCCCTATTTTTCTTAGAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
*
32230 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCTAAAACACATTGCCATTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCATTGTTAGGATACCCG
32295 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTAATAGAATCAACGTTT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTT-ATAGAATCAACGTTT
* * *
32360 GTCTCTTAAATATGCCGAACATTAATACTCAAACTAATCCTCATTCTTTTTAGATTTAGGCACCA
195 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTGAGGCACCA
* *** * *
32425 TAAACATAGTCTTCTCATTTTCATACACGATATTGATGCTCTGGTTTCGCAACAAAGGTTTTTTT
260 TAAACATAGTCTTCCCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTT
32490 CCCACCAATCGTTGTAAAGTCTAAGTTCGTGCGTCAAATGAGACAAATATGGATTCTAGTAATGA
325 CCCACCAATCGTTGTAAAGTCTAAGTTCGTGCGTCAAATGAGACAAATATGGATTCTAGTAATGA
* *
32555 TCTTCATTCTTTTTCTGGTAAAGCACTACAAACACATTCTGCTCTTTAGGAAAAAAGACACTGAA
390 TCTTCATTCTTTTTCTGGTAAAGCACTACAAACACATTCTCCTCTTTAGGAAAAAAGACATTGAA
32620 G-TTTTCTTTTGCTTGAAAAT
455 GTTTTTCTTTTGCTTGAAAAT
* *
32640 CTTTTCTTCGCCCTATTTTTCCTTAAAATTAAATGTTCATCCGTTGAATAAGACAAGCATCGATT
1 CTTTTCTTCGCCCTA-TTTTCCTTAAAATGAAA-GTTCATCCCTTGAATAAGACAAGCATCGATT
*
32705 CTCCTAACAGTCTCCTTTCTTTTTAAGATTAGGGAA-CCTAAAACACATTGCCATTGTTAGGATA
64 CTCCTAACAGTCTCCTTTCTTTTCAAGATT-GGGAAGCC-AAAACACATTGCCATTGTTAGGATA
*
32769 CCCGACA-TGAT-ATTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTAATAGAATCAAC
127 CCCGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTT-ATAGAATCAAC
* * * *
32832 GTTTGTCTCTAAAATATGCCGAACATTAAAACTCAAACTAATCCTTATTCCTTTTAGATTGAGGC
191 GTTTGTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTGAGGC
* * *
32897 CCCATAAATATAGTCTTCCCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTT
256 ACCATAAACATAGTCTTCCCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTT
*
32962 TTTTCCCACCAATCGTAGTAAAGTCTAAGTT-GTGCGTCAAATGAGACAAATATGGATTCTAGTA
321 TTTTCCCACCAATCGTTGTAAAGTCTAAGTTCGTGCGTCAAATGAGACAAATATGGATTCTAGTA
*
33026 ATGATCTTCATACTTTTTCTGGTAAAGCACTACAAACACATTCTCCTCTTTAGGAAAAAAGACAT
386 ATGATCTTCATTCTTTTTCTGGTAAAGCACTACAAACACATTCTCCTCTTTAGGAAAAAAGACAT
33091 TGAAGTTTTTC-TTTGCTTGAAAAT
451 TGAAGTTTTTCTTTTGCTTGAAAAT
* *
33115 CTTTTCTTCGCCCTATTTTCCTTAAAATTAATGTTCATCCCTTGAATAAGACAAGCATCGATTCT
1 CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
*
33180 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTTGTTAGGATACCCG
66 CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCATTGTTAGGATACCCG
* * * *
33245 ACATTGATGCTTTGCTGTCTTAAGAAAAGCTTTTCTTCGCATCGTTTTGT-TAGAATCAACG-TT
131 ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTT-TATAGAATCAACGTTT
* * * *
33308 GTTTATTAAATAAGCCGAACATTAATACTCAAACTAATCCTTATTTCCTTTTAGATTGAGGCCCC
195 GTCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCA-TTCCTTTTAGATTGAGGCACC
* * **
33373 ATAAATATAGACTTCCCATTAGGATACACGATATTGATGCTTTGGTTTCGCAGTAAAGGCTTTT
259 ATAAACATAGTCTTCCCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTT
33437 CTTTGCCCTA
Statistics
Matches: 1185, Mismatches: 74, Indels: 26
0.92 0.06 0.02
Matches are distributed among these distances:
472 76 0.06
473 446 0.38
474 105 0.09
475 228 0.19
476 229 0.19
477 64 0.05
478 37 0.03
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (475 bp):
CTTTTCTTCGCCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAATAAGACAAGCATCGATTCT
CCTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCATTGTTAGGATACCCG
ACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTCGCGTCATTTTTATAGAATCAACGTTTG
TCTCTTAAATAAGCCGAACATTAATACTCAAACTAATCCTCATTCCTTTTAGATTGAGGCACCAT
AAACATAGTCTTCCCATTAGGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTC
CCACCAATCGTTGTAAAGTCTAAGTTCGTGCGTCAAATGAGACAAATATGGATTCTAGTAATGAT
CTTCATTCTTTTTCTGGTAAAGCACTACAAACACATTCTCCTCTTTAGGAAAAAAGACATTGAAG
TTTTTCTTTTGCTTGAAAAT
Done.