genome.fa.s254.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold254
Parameters: 2 7 7 80 10 50 1000
Length:  100366

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3536--3593	23	2.6	22	86	10	82	1	20	0	77	0.86
3559--3593	11	3.3	11	88	4	54	0	20	0	80	0.72
4050--4471	166	2.6	164	83	4	487	49	9	11	30	1.70
6432--6781	175	2.0	174	83	5	447	39	18	16	26	1.91
12472--12711	112	2.1	113	87	1	338	32	23	14	29	1.94
13415--13502	28	3.2	28	77	15	85	61	9	17	12	1.56
15253--15317	29	2.2	29	91	0	103	58	10	16	13	1.63
22225--22277	20	2.6	21	79	11	65	37	11	20	30	1.88
28484--28559	12	6.9	11	75	15	52	39	2	48	9	1.49
28483--28568	24	3.8	24	72	17	85	41	2	45	10	1.51
28474--28592	42	2.8	42	92	0	193	42	2	46	8	1.47
35706--35824	42	2.8	42	92	0	193	8	46	2	42	1.47
35739--35814	12	6.9	11	75	15	52	9	48	2	39	1.49
35730--35815	24	3.8	24	72	17	85	10	45	2	41	1.51
35721--35791	18	3.6	18	69	20	52	9	43	2	43	1.52
37566--37591	13	2.0	13	100	0	52	30	15	15	38	1.88
37545--37609	32	2.0	34	90	6	107	27	12	15	44	1.82
37579--37739	65	2.5	65	95	2	290	30	18	15	35	1.92
37726--37781	20	2.8	20	89	5	78	28	17	16	37	1.91
39727--39769	20	2.1	20	82	4	50	9	27	44	18	1.80
40200--40224	13	1.9	13	100	0	50	32	16	20	32	1.94
40213--40264	20	2.6	20	100	0	104	50	11	15	23	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46424--46449	13	2.0	13	100	0	52	30	15	15	38	1.88
46404--46467	32	1.9	34	90	6	105	28	12	15	43	1.83
48093--48337	97	2.5	97	83	3	339	25	24	14	34	1.94
56391--56910	83	6.3	83	78	8	456	22	25	12	39	1.89
56400--56913	42	12.4	42	76	10	391	22	25	13	38	1.90
56845--56992	77	1.9	78	83	6	194	19	23	16	40	1.91
56952--56980	14	2.0	15	93	6	51	0	20	3	75	0.94
56929--57010	43	1.9	43	84	0	110	15	24	14	45	1.84
56839--57058	120	1.8	120	84	1	298	18	25	13	43	1.86
56687--57099	120	3.4	120	75	10	279	19	24	13	41	1.88
57263--57352	31	2.9	31	84	0	108	28	30	23	17	1.97
57156--57506	149	2.4	149	84	3	456	29	25	23	21	1.99
57412--57562	31	4.9	31	85	0	185	29	29	25	15	1.96
57263--57717	211	2.1	209	87	4	642	29	26	24	20	1.99
57623--57712	31	2.9	31	84	0	126	27	32	25	14	1.95
57685--58026	87	4.0	87	87	6	502	28	22	24	24	1.99
61927--61997	37	1.9	37	91	0	115	29	29	25	15	1.96
65673--65980	163	1.9	163	88	2	467	26	13	8	51	1.69
67574--68351	168	4.6	168	93	1	1274	36	11	10	41	1.75
67874--67911	20	2.0	20	84	5	51	52	5	0	42	1.24
68501--68934	154	2.8	154	89	0	663	21	21	20	36	1.95
68840--69053	116	1.8	115	88	5	322	23	21	21	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68963--69398	154	2.9	155	81	9	517	22	19	22	36	1.95
72635--72673	17	2.3	17	95	0	69	30	28	12	28	1.93
84532--84557	10	2.6	10	100	0	52	0	7	0	92	0.39
85301--85417	58	2.0	58	83	3	146	29	21	18	29	1.97
99404--99447	21	2.1	21	83	8	54	34	2	4	59	1.30

Tables:   1

The End!