Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2540
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 13961
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.37
Found at i:1014 original size:392 final size:395
Alignment explanation
Indices: 299--1068 Score: 967
Period size: 392 Copynumber: 2.0 Consensus size: 395
289 GTGTCGTAAG
299 AAAAGCTTTTCTTTCCACCGTTTTGGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACATGA
1 AAAAGCTTTTCTTTCCACCGTTTTGGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACATGA
* * * *
364 ATACTCAAGCTAATCCCCATTCTTTTCAGGATTAGGCACCATAACGTAGTCTCCTCAGTAGGATA
66 ATACTCAAGCTAATCCCCATTCTTTTCAAGATTAGACACCATAACATAGTCTCCTCAGTAGAATA
* * * * *
429 CATCATATTGACGCGCTTTGGTTTCGCAGGAAAGGCTTTTTTCCTACCAATTGTTGTAAAGTCTA
131 CATCATAATGAC-CGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTGTTCTAAAGTCTA
* *
494 AGTTCGTGACTCAAATGAGACAACATGGGATTCTTGTAATGATATTCATTCTTTGGTCATTAGAC
195 AGTTCGTGACTCAAATGAGACAACATGGGATTCTAGTAAAGATATTCATTCTTTGGTCATTAGAC
*
559 ACTATAAACACATTCTCCTCAATAGGATATACATATATGAGGATTTTCTTTTGCTGAAAATCTTT
260 ACTATAAACACATTCTCCTCAATAGGATATACATATATGAGGATTTTATTTTGCTGAAAATCTTT
* *
624 TCTTTGCCCT-TTTTCCTTACAATCAAAGTTCATCTCTTAAATAAGGCAAGCCACGTGTGGGGTG
325 TCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATATCTTAAATAAGGCAAGCCACGTGTGGGGTG
688 GCAAGA
390 GCAAGA
* * **
694 AAAAGC-TTT-TTTGCACCGTTTT-GATAGAATCAAAGTTTGTCTCTT-AATATTACAAACATGA
1 AAAAGCTTTTCTTTCCACCGTTTTGGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACATGA
* ** * * *
755 ATACTCCTA-CTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCCTTCTCATTTGA
66 ATACT-CAAGCTAATCCCCATTCTTTTCAAGATTAGACACCAT-AACATAGT-CTCCTCAGTAGA
* * * *
819 ATAGATCATAATGA-TGCTTTGGTTTTTGCAAG-AAGGCATTTTTCCCACCAATTATTTCTAAAG
128 ATACATCATAATGACCGCTTTGG-TTTCGCAAGAAAGGCATTTTTCCCACCAATT-GTTCTAAAG
* * * * *
882 TCTAAGTTCGTGCCTCAAATGAGACAAACAT-GGA-TCTAGTAAAGATCTTCGTTCATTTTTGTG
191 TCTAAGTTCGTGACTCAAATGAGAC-AACATGGGATTCTAGTAAAGATATTCATTC--TTTGGTC
** * * *
945 ATTAGGTACTAT-AACA-ACTTCTGCTCATTAGGATA-A-ATGATATTGATGATTTTATTTTGCA
253 ATTAGACACTATAAACACA-TTCTCCTCAATAGGATATACAT-ATA-TGAGGATTTTATTTTGC-
*
1006 TG-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATATTTTAAATAAGGCAAGCC
314 TGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATATCTTAAATAAGGCAAGCC
1069 TCGATTCTTG
Statistics
Matches: 323, Mismatches: 39, Indels: 28
0.83 0.10 0.07
Matches are distributed among these distances:
390 2 0.01
391 95 0.29
392 124 0.38
393 93 0.29
394 3 0.01
395 6 0.02
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (395 bp):
AAAAGCTTTTCTTTCCACCGTTTTGGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACATGA
ATACTCAAGCTAATCCCCATTCTTTTCAAGATTAGACACCATAACATAGTCTCCTCAGTAGAATA
CATCATAATGACCGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTGTTCTAAAGTCTAA
GTTCGTGACTCAAATGAGACAACATGGGATTCTAGTAAAGATATTCATTCTTTGGTCATTAGACA
CTATAAACACATTCTCCTCAATAGGATATACATATATGAGGATTTTATTTTGCTGAAAATCTTTT
CTTTGCCCTATTTTCCTTAAAATCAAAGTTCATATCTTAAATAAGGCAAGCCACGTGTGGGGTGG
CAAGA
Found at i:2156 original size:154 final size:156
Alignment explanation
Indices: 1998--2662 Score: 421
Period size: 154 Copynumber: 4.3 Consensus size: 156
1988 TACATTCCCT
* * * *
1998 TCATTAGGATGCATGATATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTC-TTCCACCGTTT-AT
1 TCATTAGGATACATGATATTGACGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCGTTTCAT
*
2061 AAAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCAAGCTAATCCCCATTCTTTTCA
66 AAAATCAAAGTTCGTCTCTTAAATACGACAAACATGAATACTCAAGCTAATCCCCATTCTTTTCA
**
2126 GGATTAGGCACCATAACGTAGTCTCC
131 GGATTAGGCACCATAACACAGTCTCC
* * * *
2152 TCATTAGGATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGC-TTT-TTTCCTACCAATTTT
1 TCATTAGGATACATGATATTGACGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCC-ACC--GTTT
** * * ** * * ** ***
2215 TGTAAAGTCTAAGTTCGTGACTCAAATGA-GACAAACATGGAT--TCTTG-TAATGATTTCATTC
63 CATAAAATCAAAGTTCGTCTCTTAAAT-ACGACAAACATGAATACTCAAGCTAAT--CCCCATTC
* * *
2276 TTTT--GGTCATTAGACACTATAAACACATTCTCC
125 TTTTCAGG--ATTAGGCACCAT-AACACAGTCTCC
* * * ** * * * **
2309 TCAATAGGATA-A-GATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCC-CTATTTTT
1 TCATTAGGATACATGATATTGACGCTTTGGTTTCGCAAGAAAAGCTTTTCTTT-CCAC--CGTTT
* * * * * * * ** *
2371 CCTTAAAATCAAAGTTCATCT-TTAAATAAGGCAAGCCTCG-ATTCTTGTAGC-AGT--CCATTC
63 -CATAAAATCAAAGTTCGTCTCTTAAATACGACAAACAT-GAATAC-TCAAGCTAATCCCCATTC
* * * *
2431 TTTTCATGATTTGG-ATGCCAAAACACATTC-CC
125 TTTTCAGGATTAGGCA--CCATAACACAGTCTCC
* * * *
2463 TCATTAGGATGCATGATATTGAAGCTTT-GTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTCG
1 TCATTAGGATACATGATATTGACGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCG-TTTC-
*
2527 ATAAAATCAAAGTT-G--TCTT-AATACG--AAACATGAATACTCAAACTAATCCCCATTCTTTT
64 ATAAAATCAAAGTTCGTCTCTTAAATACGACAAACATGAATACTCAAGCTAATCCCCATTCTTTT
**
2586 CAGGATTAGGCACCATAACGTAGTCTCC
129 CAGGATTAGGCACCATAACACAGTCTCC
* * *
2614 TCATTAGGATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTT
1 TCATTAGGATACATGATATTGACGCTTTGGTTTCGCAAGAAAAGCTTTT
2663 TCCTACCAAT
Statistics
Matches: 379, Mismatches: 92, Indels: 82
0.69 0.17 0.15
Matches are distributed among these distances:
148 4 0.01
149 9 0.02
150 9 0.02
151 51 0.13
152 19 0.05
153 8 0.02
154 77 0.20
155 68 0.18
156 58 0.15
157 68 0.18
158 3 0.01
159 5 0.01
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36
Consensus pattern (156 bp):
TCATTAGGATACATGATATTGACGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCGTTTCAT
AAAATCAAAGTTCGTCTCTTAAATACGACAAACATGAATACTCAAGCTAATCCCCATTCTTTTCA
GGATTAGGCACCATAACACAGTCTCC
Found at i:2658 original size:462 final size:469
Alignment explanation
Indices: 1564--2869 Score: 1960
Period size: 467 Copynumber: 2.8 Consensus size: 469
1554 TTGGGGTTGC
* *
1564 AAGAAAAGCTTTT-TTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATTAC-AAAC
1 AAGAAAAGCTTTTCTTTCCACCG-TTTTGATAAAATCAAAGTTTG-CTCTT-AA-A-TACGAAAC
* ** ** * * * *
1627 ATGAATACTCATACTAAT-CCTGTTCTTTTCAATATTAGACACCATAAACATAGTCTTCTCATTT
61 ATGAATACTCAAACTAATCCCCATTCTTTTCAGGATTAGGCACCAT-AACGTAGTCTCCTCATTA
* * * * * * **
1691 GAATAGATCATAATGATGCTTTGGTTT-GCAAGAAAGGCATTTTTTCCCACCAATTTTTCAAAAG
125 GGATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGC-TTTTTTCCTACCAATTTTTGTAAAG
* * * * * *
1755 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGA-TCTAGTAAAGATCTTCGTTCATTTT-GTGA
189 TCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGATATTCATTC-TTTTGGTCA
** * * *
1818 TTAGGTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGA-TTTATTTTGCATGAA
253 TTAGACACTATAAACACATTCTCCTCAATAGGAT-AATGATATTGATGATTTTCTTTTGCATGAA
1882 AATCTTTTC-TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGC-AGCCTCGAT
317 AATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCCTCGAT
*
1945 TCTTGTAGCAGTCTCCATTCTTTTAATGATTTGGATGCCAAAATACATTCCCTTCATTAGGATGC
382 TCTTGTAGCAG-CTCCATTCTTTTAATGATTTGGATGCCAAAACACATTCCCTTCATTAGGATGC
*
2010 ATGATATTGATGCTTTGGTGTCGT
446 ATGATATTGAAGCTTTGGTGTCGT
2034 AAGAAAAGCTTTTC-TTCCACCG-TTT-ATAAAATCAAAGTTTGTCTCTTAAATACGACAAACAT
1 AAGAAAAGCTTTTCTTTCCACCGTTTTGATAAAATCAAAGTTTG-CTCTTAAATACG--AAACAT
*
2096 GAATACTCAAGCTAATCCCCATTCTTTTCAGGATTAGGCACCATAACGTAGTCTCCTCATTAGGA
63 GAATACTCAAACTAATCCCCATTCTTTTCAGGATTAGGCACCATAACGTAGTCTCCTCATTAGGA
2161 TACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTCCTACCAATTTTTGTAAAGTCTA
128 TACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTCCTACCAATTTTTGTAAAGTCTA
2226 AGTTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGAT-TTCATTCTTTTGGTCATTAGA
193 AGTTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGATATTCATTCTTTTGGTCATTAGA
2290 CACTATAAACACATTCTCCTCAATAGGATAA-GATATTGATGATTTTCTTTTGCATGAAAATCTT
258 CACTATAAACACATTCTCCTCAATAGGATAATGATATTGATGATTTTCTTTTGCATGAAAATCTT
2354 TTCTTTGCCCTATTTTTCCTTAAAATCAAAGTTCAT-CTTTAAATAAGGCAAGCCTCGATTCTTG
323 TTCTTTGCCCTA-TTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCCTCGATTCTTG
*
2418 TAGCAG-TCCATTCTTTTCATGATTTGGATGCCAAAACACATTCCC-TCATTAGGATGCATGATA
387 TAGCAGCTCCATTCTTTTAATGATTTGGATGCCAAAACACATTCCCTTCATTAGGATGCATGATA
2481 TTGAAGCTTT-GTGTCGT
452 TTGAAGCTTTGGTGTCGT
2498 AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAG-TTG-TCTT-AATACGAAACATGA
1 AAGAAAAGCTTTTCTTTCCACCGTTTT-GATAAAATCAAAGTTTGCTCTTAAATACGAAACATGA
2560 ATACTCAAACTAATCCCCATTCTTTTCAGGATTAGGCACCATAACGTAGTCTCCTCATTAGGATA
65 ATACTCAAACTAATCCCCATTCTTTTCAGGATTAGGCACCATAACGTAGTCTCCTCATTAGGATA
2625 CATCATATTGACGCTTTGGTTTCGCAGGAAAGGC-TTTTTCCTACCAATTTTTGTAAAGTCTAAG
130 CATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTCCTACCAATTTTTGTAAAGTCTAAG
2689 TTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGATATTCATTC-TTTGGTCATTAGACA
195 TTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGATATTCATTCTTTTGGTCATTAGACA
2753 CTAGTAAACACATTCTCCTCAATAGGATATATGATATTGATGATTTTCTTTTGCATGAAAATCTT
260 CTA-TAAACACATTCTCCTCAATAGGATA-ATGATATTGATGATTTTCTTTTGCATGAAAATCTT
* *
2818 TTCTTTG-CCTATTTTCCTTACAATCAAAG-TCATCCCTTAAATAAGGCAAGCC
323 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCC
2870 ACGTTTGGGG
Statistics
Matches: 779, Mismatches: 36, Indels: 50
0.90 0.04 0.06
Matches are distributed among these distances:
461 93 0.12
462 172 0.22
463 5 0.01
464 70 0.09
465 51 0.07
466 71 0.09
467 197 0.25
468 100 0.13
470 20 0.03
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.36
Consensus pattern (469 bp):
AAGAAAAGCTTTTCTTTCCACCGTTTTGATAAAATCAAAGTTTGCTCTTAAATACGAAACATGAA
TACTCAAACTAATCCCCATTCTTTTCAGGATTAGGCACCATAACGTAGTCTCCTCATTAGGATAC
ATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTCCTACCAATTTTTGTAAAGTCTAAGT
TCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGATATTCATTCTTTTGGTCATTAGACAC
TATAAACACATTCTCCTCAATAGGATAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTC
TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCCTCGATTCTTGTAGC
AGCTCCATTCTTTTAATGATTTGGATGCCAAAACACATTCCCTTCATTAGGATGCATGATATTGA
AGCTTTGGTGTCGT
Found at i:3921 original size:870 final size:870
Alignment explanation
Indices: 2034--12544 Score: 19466
Period size: 870 Copynumber: 12.1 Consensus size: 870
2024 TTGGTGTCGT
* * * **
2034 AAGAAAAGCTTTTCTTCCACCG--TTT-ATAAAATCAAAGTTTGTCTCTTAAATACGACAAACAT
1 AAGAAAAGCTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATTACAAACAT
** * * * * *
2096 GAATACTCA-AGCTAATCCCCATTCTTTTCAGGATTAGGCACCAT-AACGTAGTCTCCTCATTAG
66 GAATACTCATA-CTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTG
* * * * * * * * *
2159 GATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTCCTACCAATTTTTGTAAAGTC
130 AATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGTC
* * * * *
2224 TAAGTTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGAT-TTCATTC-TTTTGGTCATT
195 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTT-GTGATT
** * * *
2287 AGACACTATAAACACATTCTCCTCAATAGGAT-AA-GATATTGATGATTTTCTTTTGCATGAAAA
259 AGGTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAA
2350 TCTTTTCTTTGCCCTATTTTTCCTTAAAATCAAAGTTCAT-CTTTAAATAAGGCAAGCCTCGATT
324 TCTTTTCTTTGCCCTA-TTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCCTCGATT
2414 CTTGTAGCAG--TCCATTCTTTTCATGATTTGGATGCCAAAACACATTCCC-TCATTAGGATGCA
388 CTTGTAGCAGTCTCCATTCTTTTCATGATTTGGATGCCAAAACACATTCCCTTCATTAGGATGCA
*
2476 TGATATTGAAGCTTT-GTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAG-
453 TGATATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGT
*
2539 TTG--TCTT-AATACG--AAACATGAATACTCAAACTAATCCCCATTCTTTTCAGGATTAGGCAC
518 TTGTCTCTTAAATACGACAAACATGAATACTCAAGCTAATCCCCATTCTTTTCAGGATTAGGCAC
2599 CATAACGTAGTCTCCTCATTAGGATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGC-TTTT
583 CATAACGTAGTCTCCTCATTAGGATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTT
2663 TCCTACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATG
648 TCCTACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATG
* *
2728 ATATTCATTC-TTTGGTCATTAGACACTAGTAAACACATTCTCCTCAATAGGATATATGATATTG
713 ATATTCATTCTTTTGGTCATTAGACAGTA-TAAACACATTCTCCTCAATAGGATAAATGATATTG
*
2792 ATGATTTTCTTTTGCATGAAAATCTTTTCTTTG-CCTATTTTCCTTACAATCAAAG-TCATCCCT
777 ATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCTT
*
2855 TAAATAAGGCAAGCCACGTTTGGGGTTGC
842 TAAATAAGGCAAGCCACGTTTGGGGTGGC
2884 AAGAAAAGCTTTTTTTGCACCG-TTTTGATAGAATCAAAGTTTGTCTCTTAAATATTACAAACAT
1 AAGAAAAGCTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATTACAAACAT
2948 -AATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTGA
66 GAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTGA
3012 ATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTTCTAAAGTC
131 ATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAA-TTTTTCTAAAGTC
*
3077 TAAGTTCGTGCCTCAAATGAGACAAACATGGATCCTAGTAAAGATCTTCGTTCATTTTGTGATTA
195 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTTGTGATTA
3142 GGTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAAT
260 GGTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAAT
*
3207 CTTTTCTTTGCCCTATTTT-CTTAAAATCAAAGTTCATATTTTAAATAAGGCAAGCCTCGATTCT
325 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCCTCGATTCT
3271 TGTAGCAGTCTCCATTCTTTTCATGATTTGGATGCCAAAACACATT-CCTTCATTAGGATGCATG
390 TGTAGCAGTCTCCATTCTTTTCATGATTTGGATGCCAAAACACATTCCCTTCATTAGGATGCATG
*
3335 ATATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTGGATAAAATCAAAGTTT
455 ATATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTT
3400 GTCTCTTAAATACGACAAACATGAATACTCAAGCTAATCCCCATTCTTTTCAGGATTAGGCACCA
520 GTCTCTTAAATACGACAAACATGAATACTCAAGCTAATCCCCATTCTTTTCAGGATTAGGCACCA
3465 TAACGTAGTCTCCTCATTAGGATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTC
585 TAACGTAGTCTCCTCATTAGGATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTC
3530 CTACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGAT
650 CTACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGAT
3595 ATTCATTCTTTTGGTCATTAGACAGCTATAAACACATTCTCCTCAATAGGATATAATGATATTGA
715 ATTCATTCTTTTGGTCATTAGACAG-TATAAACACATTCTCCTCAATAGGATA-AATGATATTGA
3660 TGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCC-TT
778 TGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCTTT
3724 AAATAAGGCAAGCCACGTTTGGGGTGGC
843 AAATAAGGCAAGCCACGTTTGGGGTGGC
3752 AAGAAAAGCTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATTACAAACAT
1 AAGAAAAGCTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATTACAAACAT
3817 GAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTGA
66 GAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTGA
3882 ATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGTCT
131 ATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGTCT
3947 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTTGTGATTAG
196 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTTGTGATTAG
4012 GTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATC
261 GTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATC
4077 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT-CTTTAAATAAGGCAAGCCTCGATTCTT
326 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCCTCGATTCTT
*
4141 GTAGCAGTCTCCATTCTTTTCATGATTTGGATGCCAAAACACATTCCATTCATTAGGATGCATGA
391 GTAGCAGTCTCCATTCTTTTCATGATTTGGATGCCAAAACACATTCCCTTCATTAGGATGCATGA
*
4206 TATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTGGATAAAATCAAAGTTTG
456 TATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTG
4271 TCTCTTAAATACGACAAACATGAATACTCAAGCTAATCCCCATTCTTTTCAGGATTAGGCACCAT
521 TCTCTTAAATACGACAAACATGAATACTCAAGCTAATCCCCATTCTTTTCAGGATTAGGCACCAT
4336 AACGTAGTCTCCTCATTAGGATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGC-TTTTTCC
586 AACGTAGTCTCCTCATTAGGATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTCC
4400 TACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGATA
651 TACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGATA
* *
4465 TTCATTCTTTTGGTCATTAGACACTATAAACACATTCTCCTCAATAGGATATATGATATTGATGA
716 TTCATTCTTTTGGTCATTAGACAGTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGA
*
4530 TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCCTTAAA
781 TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCTTTAAA
*
4595 TAAGGCAAGCCACGTTTGGGGTTGC
846 TAAGGCAAGCCACGTTTGGGGTGGC
4620 AAGAAAAGCTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATTACAAACAT
1 AAGAAAAGCTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATTACAAACAT
4685 GAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTGA
66 GAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTGA
4750 ATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGTCT
131 ATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGTCT
*
4815 AAGTTCGTGCCTCAAATGAGACAAACATGGATCCTAGTAAAGATCTTCGTTCATTTTGTGATTAG
196 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTTGTGATTAG
4880 GTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATC
261 GTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATC
4945 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCCTCGATTCTT
326 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCCTCGATTCTT
5010 GTAGCAGTCTCCATTCTTTTCATGATTTGGATGCCAAAACACATTCCCTTCATTAGGATGCATGA
391 GTAGCAGTCTCCATTCTTTTCATGATTTGGATGCCAAAACACATTCCCTTCATTAGGATGCATGA
*
5075 TATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTGGATAAAATCAAAGTTTG
456 TATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTG
5140 TCTCTTAAATACGACAAACATGAATACTCAAGCTAATCCCCATTCTTTTCAGGATTAGGCACCAT
521 TCTCTTAAATACGACAAACATGAATACTCAAGCTAATCCCCATTCTTTTCAGGATTAGGCACCAT
5205 AACGTAGTCTCCTCATTAGGATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTCC
586 AACGTAGTCTCCTCATTAGGATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTCC
5270 TACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGATA
651 TACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGATA
5335 TTCATTCTTTTGGTCATTAGACAGTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGA
716 TTCATTCTTTTGGTCATTAGACAGTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGA
5400 TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCTTTAAA
781 TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCTTTAAA
5465 TAAGGCAAGCCACGTTTGGGGTGGC
846 TAAGGCAAGCCACGTTTGGGGTGGC
5490 AAGAAAAGCTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATTACAAACAT
1 AAGAAAAGCTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATTACAAACAT
5555 GAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTGA
66 GAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTGA
5620 ATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGTCT
131 ATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGTCT
5685 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTTGTGATTAG
196 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTTGTGATTAG
5750 GTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATC
261 GTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATC
*
5815 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATATTTTAAATAAGGCAAGCCTCGATTCTT
326 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCCTCGATTCTT
5880 GTAGCAGTCTCCATTCTTTTCATGATTTGGATGCCAAAACACATTCCCTTCATTAGGATGCATGA
391 GTAGCAGTCTCCATTCTTTTCATGATTTGGATGCCAAAACACATTCCCTTCATTAGGATGCATGA
*
5945 TATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTCCCACCGTTTTCGATAAAATCAAAGTTTG
456 TATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTG
6010 TCTCTTAAATACGACAAACATGAATACTCAAGCTAATCCCCATTCTTTTCAGGATTAGGCACCAT
521 TCTCTTAAATACGACAAACATGAATACTCAAGCTAATCCCCATTCTTTTCAGGATTAGGCACCAT
6075 AACGTAGTCTCCTCATTAGGATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTCC
586 AACGTAGTCTCCTCATTAGGATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTCC
6140 TACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGATA
651 TACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGATA
6205 TTCATTCTTTTGGTCATTAGACAGTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGA
716 TTCATTCTTTTGGTCATTAGACAGTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGA
*
6270 TTTTCTTTTGCATGAAAATCTTTTCTTTGTCCTATTTTCCTTACAATCAAAGTTCATCCTTTAAA
781 TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCTTTAAA
6335 TAAGGCAAGCCACGTTTGGGGTGGC
846 TAAGGCAAGCCACGTTTGGGGTGGC
6360 AAGAAAAGCTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATTACAAACAT
1 AAGAAAAGCTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATTACAAACAT
6425 GAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTGA
66 GAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTGA
*
6490 ATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTCAAAAGTCT
131 ATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGTCT
6555 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTTGTGATTAG
196 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTTGTGATTAG
*
6620 GTACTATAAATACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATC
261 GTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATC
*
6685 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATATTTTAAATAAGGCAAGCCTCGATTCTT
326 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCCTCGATTCTT
*
6750 GTAGCAGTCTCCATTCTTTTCATGATTTGGATGCCAAAACACATTCCATTCATTAGGATGCATGA
391 GTAGCAGTCTCCATTCTTTTCATGATTTGGATGCCAAAACACATTCCCTTCATTAGGATGCATGA
6815 TATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTG
456 TATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTG
6880 TCTCTTAAATACGACAAACATGAATACTCAAGCTAATCCCCATTCTTTTCAGGATTAGGCACCAT
521 TCTCTTAAATACGACAAACATGAATACTCAAGCTAATCCCCATTCTTTTCAGGATTAGGCACCAT
6945 AACGTAGTCTCCTCATTAGGATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTCC
586 AACGTAGTCTCCTCATTAGGATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTCC
7010 TACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGATA
651 TACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGATA
* *
7075 TTCATTCTTTTGGTCATTAGACACTATAAACACATTCTCCTCAATAGGATATATGATATTGATGA
716 TTCATTCTTTTGGTCATTAGACAGTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGA
*
7140 TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCCTTAAA
781 TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCTTTAAA
*
7205 TAAGGCAAGCCACGTTTGGGGTTGC
846 TAAGGCAAGCCACGTTTGGGGTGGC
7230 AAGAAAAGCTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATTACAAACAT
1 AAGAAAAGCTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATTACAAACAT
7295 GAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTGA
66 GAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTGA
*
7360 ATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTCAAAAGTCT
131 ATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGTCT
*
7425 AAGTTCGTGCCTCAAATGAGACAAACATGGATCCTAGTAAAGATCTTCGTTCATTTTGTGATTAG
196 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTTGTGATTAG
7490 GTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATC
261 GTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATC
7555 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCCTCGATTCTT
326 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCCTCGATTCTT
7620 GTAGCAGTCTCCATTCTTTTCATGATTTGGATGCCAAAACACATTCCCTTCATTAGGATGCATGA
391 GTAGCAGTCTCCATTCTTTTCATGATTTGGATGCCAAAACACATTCCCTTCATTAGGATGCATGA
7685 TATTGATGCTTTGGTGTCGTAA-AAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTG
456 TATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTG
7749 TCTCTTAAATACGAC-AACATGAATACTCAAGCTAATCCCCATTCTTTTCAGGATTAGGCACCAT
521 TCTCTTAAATACGACAAACATGAATACTCAAGCTAATCCCCATTCTTTTCAGGATTAGGCACCAT
7813 AACGTAGTCTCCTCATTAGGATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTCC
586 AACGTAGTCTCCTCATTAGGATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTCC
7878 TACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGATA
651 TACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGATA
7943 TTCATTCTTTTGGTCATTAGACAGTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGA
716 TTCATTCTTTTGGTCATTAGACAGTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGA
8008 TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCTTTAAA
781 TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCTTTAAA
8073 TAAGGCAAGCCACGTTTGGGGTGGC
846 TAAGGCAAGCCACGTTTGGGGTGGC
8098 AAGAAAAGCTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATTACAAACAT
1 AAGAAAAGCTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATTACAAACAT
8163 GAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTGA
66 GAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTGA
8228 ATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGTCT
131 ATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGTCT
8293 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTTGTGATTAG
196 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTTGTGATTAG
8358 GTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATC
261 GTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATC
8423 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCCTCGATTCTT
326 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCCTCGATTCTT
8488 GTAGCAGTCTCCATTCTTTTCATGATTTGGATGCCAAAACACATTCCCTTCATTAGGATGCATGA
391 GTAGCAGTCTCCATTCTTTTCATGATTTGGATGCCAAAACACATTCCCTTCATTAGGATGCATGA
8553 TATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAG-TTG
456 TATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTG
8617 TCTCTT-AATACGACAAACATGAATACTCAAGCTAATCCCCATTCTTTTCAGGATTAGGCACCAT
521 TCTCTTAAATACGACAAACATGAATACTCAAGCTAATCCCCATTCTTTTCAGGATTAGGCACCAT
8681 AACGTAGTCTCCTCATTAGGATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTCC
586 AACGTAGTCTCCTCATTAGGATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTCC
8746 TACCAA-TTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGATA
651 TACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGATA
8810 TTCATTCTTTTGGTCATTAGACAGTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGA
716 TTCATTCTTTTGGTCATTAGACAGTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGA
*
8875 TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTACAATCAATGTTCATCCTTTAAA
781 TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCTTTAAA
8940 TAAGGCAAGCCACGTTTGGGGTGGC
846 TAAGGCAAGCCACGTTTGGGGTGGC
8965 AAGAAAAGCTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATTACAAACAT
1 AAGAAAAGCTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATTACAAACAT
9030 GAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTGA
66 GAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTGA
*
9095 ATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTCAAAAGTCT
131 ATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGTCT
9160 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTTGTGATTAG
196 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTTGTGATTAG
*
9225 GTACTATAAATACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATC
261 GTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATC
9290 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCCTCGATTCTT
326 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCCTCGATTCTT
9355 GTAGCAGTCTCCATTCTTTTCATGATTTGGATGCCAAAACACATTCCCTTCATTAGGATGCATGA
391 GTAGCAGTCTCCATTCTTTTCATGATTTGGATGCCAAAACACATTCCCTTCATTAGGATGCATGA
9420 TATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTG
456 TATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTG
*
9485 ---------T-CG---AACATGAATACTCAAACTAATCCCCATTCTTTTCAGGATTAGGCACCAT
521 TCTCTTAAATACGACAAACATGAATACTCAAGCTAATCCCCATTCTTTTCAGGATTAGGCACCAT
9537 AACGTAGTCTCCTCATTAGGATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTCC
586 AACGTAGTCTCCTCATTAGGATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTCC
9602 TACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGATA
651 TACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGATA
9667 TTCATTCTTTTGGTCATTAGACAGTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGA
716 TTCATTCTTTTGGTCATTAGACAGTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGA
9732 TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCTTTAAA
781 TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCTTTAAA
9797 TAAGGCAAGCCACGTTTGGGGTGGC
846 TAAGGCAAGCCACGTTTGGGGTGGC
9822 AAGAAAAGCTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATTACAAACAT
1 AAGAAAAGCTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATTACAAACAT
9887 GAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTGA
66 GAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTGA
9952 ATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGTCT
131 ATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGTCT
10017 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTTGTGATTAG
196 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTTGTGATTAG
10082 GTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATC
261 GTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATC
10147 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTTAAATAAGGCAAGCCTCGATTCT
326 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATAC-TTTAAATAAGGCAAGCCTCGATTCT
*
10212 TGTAGCAGTCTCCATTCTTTTCATGATTTGGATGCCAAAACACATTCCATTCATTAGGATGCATG
390 TGTAGCAGTCTCCATTCTTTTCATGATTTGGATGCCAAAACACATTCCCTTCATTAGGATGCATG
*
10277 ATATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTCCCACCGTTTTCGATAAAATCAAAGTTT
455 ATATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTT
10342 GTCTCTTAAATACGACAAACATGAATACTCAAGCTAATCCCCATTCTTTTCAGGATTAGGCACCA
520 GTCTCTTAAATACGACAAACATGAATACTCAAGCTAATCCCCATTCTTTTCAGGATTAGGCACCA
10407 TAACGTAGTCTCCTCATTAGGATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTC
585 TAACGTAGTCTCCTCATTAGGATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTC
10472 CTACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGAT
650 CTACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGAT
10537 ATTCATTCTTTTGGTCATTAGACAGTATAAACACATTCTCCTCAATAGGATAAATGATATTGATG
715 ATTCATTCTTTTGGTCATTAGACAGTATAAACACATTCTCCTCAATAGGATAAATGATATTGATG
10602 ATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCTTTAA
780 ATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCTTTAA
10667 ATAAGGCAAGCCACGTTTGGGGTGGC
845 ATAAGGCAAGCCACGTTTGGGGTGGC
10693 AAGAAAAGCTTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATTACAAACA
1 AAGAAAAGC-TTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATTACAAACA
10758 TGAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTG
65 TGAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTG
*
10823 AATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTCAAAAGTC
130 AATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGTC
10888 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTTGTGATTA
195 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTTGTGATTA
*
10953 GGTACTATAAATACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAAT
260 GGTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAAT
11018 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCCTCGATTCT
325 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCCTCGATTCT
11083 TGTAGCAGTCTCCATTCTTTTCATGATTTGGATGCCAAAACACATTCCCTTCATTAGGATGCATG
390 TGTAGCAGTCTCCATTCTTTTCATGATTTGGATGCCAAAACACATTCCCTTCATTAGGATGCATG
*
11148 ATATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTCCCACCGTTTTCGATAAAATCAAAGTTT
455 ATATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTT
11213 GTCTCTTAAATACGACAAACATGAATACTCAAGCTAATCCCCATTCTTTTCAGGATTAGGCACCA
520 GTCTCTTAAATACGACAAACATGAATACTCAAGCTAATCCCCATTCTTTTCAGGATTAGGCACCA
11278 TAACGTAGTCTCCTCATTAGGATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTC
585 TAACGTAGTCTCCTCATTAGGATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTC
11343 CTACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGAT
650 CTACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGAT
11408 ATTCATTCTTTTGGTCATTAGACAGTATAAACACATTCTCCTCAATAGGATAAATGATA-TGATG
715 ATTCATTCTTTTGGTCATTAGACAGTATAAACACATTCTCCTCAATAGGATAAATGATATTGATG
11472 ATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCTTTAA
780 ATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCTTTAA
11537 ATAAGGCAAGCCACGTTTGGGGTGGC
845 ATAAGGCAAGCCACGTTTGGGGTGGC
11563 AAGAAAAGCTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATTACAAACAT
1 AAGAAAAGCTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATTACAAACAT
11628 GAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTGA
66 GAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTGA
11693 ATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGTCT
131 ATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGTCT
11758 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTTGTGATTAG
196 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTTGTGATTAG
11823 GTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATC
261 GTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATC
11888 -TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCCTCGATTCTT
326 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCCTCGATTCTT
11952 GTAGCAGTCTCCATTCTTTTCATGATTTGGATGCCAAAACACATTCCCTTCATTAGGATGCATGA
391 GTAGCAGTCTCCATTCTTTTCATGATTTGGATGCCAAAACACATTCCCTTCATTAGGATGCATGA
12017 TATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTG
456 TATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTG
*
12082 ---------T-CG---AACATGAATACTCAAACTAATCCCCATTCTTTTCAGGATTAGGCACCAT
521 TCTCTTAAATACGACAAACATGAATACTCAAGCTAATCCCCATTCTTTTCAGGATTAGGCACCAT
12134 AACGTAGTCTCCTCATTAGGATACATTCATATTGACGCTTTGGTATTCGCAGGAAGGAAAGGCTT
586 AACGTAGTCTCCTCATTAGGATACA-TCATATTGACGCTTTGGT-TTCGC----AGGAAAGGCTT
* * *
12199 TTTTCCTACCAATTTTTGTAAAGTCT-AGTTTCGTGACTCAACTGA-ACACACATGGA-TCTTTT
645 TTTTCCTACCAATTTTTGTAAAGTCTAAG-TTCGTGACTCAAATGAGACAAACATGGATTCTTGT
* *
12261 AATGATATTC-TATCTTTTGGTCATTAGACACTATAAACACATTC-CTCTCAATAGGATATATGA
709 AATGATATTCAT-TCTTTTGGTCATTAGACAGTATAAACACATTCTC-CTCAATAGGATAAATGA
* *
12324 TATCTGATGATATTTC-TTTGCATGAACATCCTTTC-TTGCCCTA-TTTCCTTACAATCAAAGTT
772 TAT-TGATGAT-TTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTACAATCAAAGTT
* * *
12386 CATCCCTTACATAAGGCAAG-CACG-TTGGGGTTAGC
835 CATCCTTTAAATAAGGCAAGCCACGTTTGGGG-TGGC
* ** *
12421 AAG-AAAGCCTTTTATTGCACCG-TTTTGA-AGAATCAAAGTTTGTCTCTTCCATATGACAAAAC
1 AAGAAAAG-CTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATTAC-AAAC
*
12483 ATGAAGTCCTCATACTAAATCCCTGTTTCTTTTCAAGATTAGAGCACCATAAACATAGTCTT
64 ATGAA-TACTCATACT-AATCCCTG-TTCTTTTCAAGATTAGA-CACCATAAACATAGTCTT
12545 TTCTTGCCCT
Statistics
Matches: 9483, Mismatches: 107, Indels: 131
0.98 0.01 0.01
Matches are distributed among these distances:
850 20 0.00
851 40 0.00
852 95 0.01
853 53 0.01
854 57 0.01
855 116 0.01
856 209 0.02
857 667 0.07
858 237 0.02
859 115 0.01
860 38 0.00
861 98 0.01
862 10 0.00
864 106 0.01
865 79 0.01
866 40 0.00
867 851 0.09
868 1622 0.17
869 1062 0.11
870 2865 0.30
871 750 0.08
872 353 0.04
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.37
Consensus pattern (870 bp):
AAGAAAAGCTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATTACAAACAT
GAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTGA
ATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGTCT
AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTTGTGATTAG
GTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATC
TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCCTCGATTCTT
GTAGCAGTCTCCATTCTTTTCATGATTTGGATGCCAAAACACATTCCCTTCATTAGGATGCATGA
TATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTG
TCTCTTAAATACGACAAACATGAATACTCAAGCTAATCCCCATTCTTTTCAGGATTAGGCACCAT
AACGTAGTCTCCTCATTAGGATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTCC
TACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGATA
TTCATTCTTTTGGTCATTAGACAGTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGA
TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCTTTAAA
TAAGGCAAGCCACGTTTGGGGTGGC
Found at i:4022 original size:395 final size:395
Alignment explanation
Indices: 3356--4131 Score: 1182
Period size: 396 Copynumber: 2.0 Consensus size: 395
3346 TTGGTGTCGT
3356 AAGAAAAGCTTTTCTTTCCACCGTTTTGGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACA
1 AAGAAAAGCTTTTCTTTCCACCGTTTTGGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACA
* * * *
3421 TGAATACTCAAGCTAATCCCCATTCTTTTCAGGATTAGGCACCATAACGTAGTCTCCTCATTAGG
66 TGAATACTCAAGCTAATCCCCATTCTTTTCAAGATTAGACACCATAACATAGTCTCCTCATTAGA
* * * * *
3486 ATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTCCTACCAATTTTTGTAAAGTCT
131 ATACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGTCT
* *
3551 AAGTTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGATATTCATTCTTTTGGTCATTAG
196 AAGTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAAAGATATTCATTCTTTTGGTCATTAG
*
3616 ACAGCTATAAACACATTCTCCTCAATAGGATATAATGATATTGATGATTTTCTTTTGCATGAAAA
261 ACAGCTATAAACACATTCTCCTCAATAGGATA-AATGATATTGATGATTTTATTTTGCATGAAAA
*
3681 TCTTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCTTAAATAAGGCAAGCCACGTTTGG
325 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTAAATAAGGCAAGCCACGTTTGG
3746 GGTGGC
390 GGTGGC
* * * **
3752 AAGAAAAGCTTTT-TTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATTACAAACA
1 AAGAAAAGCTTTTCTTTCCACCGTTTTGGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACA
** * *
3816 TGAATACTCATA-CTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTT
66 TGAATACTCA-AGCTAATCCCCATTCTTTTCAAGATTAGACACCAT-AACATAGTCTCCTCATTA
* * *
3880 GAATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGT
129 GAATACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGT
* * * *
3945 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTT-GTGAT
194 CTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAAAGATATTCATTC-TTTTGGTCAT
** * *
4009 TAGGTA-CTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAA
258 TAGACAGCTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTATTTTGCATGAA
*
4073 AATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCTTTAAATAAGGCAAGCC
323 AATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTAAATAAGGCAAGCC
4132 TCGATTCTTG
Statistics
Matches: 343, Mismatches: 34, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
394 86 0.25
395 111 0.32
396 142 0.41
397 4 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (395 bp):
AAGAAAAGCTTTTCTTTCCACCGTTTTGGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACA
TGAATACTCAAGCTAATCCCCATTCTTTTCAAGATTAGACACCATAACATAGTCTCCTCATTAGA
ATACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGTCT
AAGTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAAAGATATTCATTCTTTTGGTCATTAG
ACAGCTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTATTTTGCATGAAAAT
CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTAAATAAGGCAAGCCACGTTTGGG
GTGGC
Found at i:4055 original size:158 final size:158
Alignment explanation
Indices: 3838--4556 Score: 435
Period size: 158 Copynumber: 4.6 Consensus size: 158
3828 CTAATCCCTG
** * * * * * * * * *
3838 TTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTGAATAGATCATAATGATGCTTTG
1 TTCTTTTCGTGATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTG
* * * *
3903 GTTTTGCAAGAAAGGCATTT-TTCCCACCAATTTTTCTAAAGTCTAAGTTCGTGCCTCAAATGAG
66 GTTTTGCAAGAAAAGCTTTTCTTCCCACCAATTTTTCTAAAATCAAAGTTCGT-CCTCAAATGAG
* *
3967 ACAAACATGGATTCTAGTAAAGATCTTCG
130 ACAAACATGGATTCTAGTAAAGATCTCCA
* * * * *
3996 TTCATTTT-GTGATTAGGTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTT
1 TTC-TTTTCGTGATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTT
** * * ** * * * * * *
4060 TATTTTGCATGAAAATCTTTTCTTTGC-CCTATTTTCCTTAAAATCAAAGTTCATCTTTAAATAA
65 GGTTTTGCAAGAAAAGCTTTTCTTCCCACCAATTTTTC-TAAAATCAAAGTTCGTCCTCAAATGA
* * * * * *
4124 GGCAAGCCTCGATTCTTGTAGCAG-TCTCCA
129 GACAAACATGGATTCTAGTA-AAGATCTCCA
* * * *
4154 TTCTTTTCATGATTTGG-ATGCCA-AAACACATTC-CATTCATTAGGATGCATGATATTGATGCT
1 TTCTTTTCGTGATTAGGCA--CCATAAACACATTCTC-CTCATTAGGATACATGATATTGATGCT
* * * * * ** * *
4216 TTGGTGTCGTAAGAAAAGCTTTTCTTTCCACC-GTTTTGGATAAAATCAAAGTTTGTCTCTTAAA
63 TTGGTTTTGCAAGAAAAGCTTTTCTTCCCACCAATTTT-TCTAAAATCAAAGTTCGTC-CTCAAA
* * *
4280 T-ACGACAAACATGAATACTCAAGCT--A-ATCCCCA
126 TGA-GACAAACATGGAT--TCTAG-TAAAGATCTCCA
** * * *
4313 TTCTTTTCAG-GATTAGGCACCAT-AACGTAGTCTCCTCATTAGGATACATCATATTGACGCTTT
1 TTCTTTTC-GTGATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTT
* * * * * * * *
4376 GGTTTCGCAGGAAAGGC-TTT-TTCCTACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGA
65 GGTTTTGCAAGAAAAGCTTTTCTTCCCACCAATTTTTCTAAAATCAAAGTTCGT-CCTCAAATGA
* * * *
4439 GACAAACATGGATTCTTGTAATGATATTCA
129 GACAAACATGGATTCTAGTAAAGATCTCCA
* * * * * * * *
4469 TTCTTTTGGTCATTAGACACTATAAACACATTCTCCTCAATAGGATATATGATATTGATGATTTT
1 TTCTTTTCGTGATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTG
* * *
4534 CTTTTGCATGAAAATCTTTTCTT
66 GTTTTGCAAGAAAAGCTTTTCTT
4557 TGCCCTATTT
Statistics
Matches: 415, Mismatches: 116, Indels: 59
0.70 0.20 0.10
Matches are distributed among these distances:
153 1 0.00
154 3 0.01
155 1 0.00
156 58 0.14
157 56 0.13
158 228 0.55
159 63 0.15
160 1 0.00
161 3 0.01
162 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (158 bp):
TTCTTTTCGTGATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTG
GTTTTGCAAGAAAAGCTTTTCTTCCCACCAATTTTTCTAAAATCAAAGTTCGTCCTCAAATGAGA
CAAACATGGATTCTAGTAAAGATCTCCA
Found at i:4918 original size:395 final size:394
Alignment explanation
Indices: 4226--5000 Score: 1169
Period size: 395 Copynumber: 2.0 Consensus size: 394
4216 TTGGTGTCGT
4226 AAGAAAAGCTTTTCTTTCCACCGTTTTGGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACA
1 AAGAAAAGCTTTTCTTTCCACCGTTTTGGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACA
* * * *
4291 TGAATACTCAAGCTAATCCCCATTCTTTTCAGGATTAGGCACCATAACGTAGTCTCCTCATTAGG
66 TGAATACTCAAGCTAATCCCCATTCTTTTCAAGATTAGACACCATAACATAGTCTCCTCATTAGA
* * * *
4356 ATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTCCTACCAATTTTTGTAAAGTCTA
131 ATACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCTTTTTCCCACCAATTTTTCTAAAGTCTA
* * *
4421 AGTTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGATATTCATTCTTTTGGTCATTAGA
196 AGTTCGTGACTCAAATGAGACAAACATGGATCCTAGTAAAGATATTCATTCTTTTGGTCATTAGA
* *
4486 CACTATAAACACATTCTCCTCAATAGGATATATGATATTGATGATTTTCTTTTGCATGAAAATCT
261 CACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATCT
* *
4551 TTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCCTTAAATAAGGCAAGCCACGTTTGGGG
326 TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTAAATAAGGCAAGCCACGTTTGGGG
4616 TTGC
391 TTGC
* * * **
4620 AAGAAAAGCTTTT-TTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATTACAAACA
1 AAGAAAAGCTTTTCTTTCCACCGTTTTGGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACA
** * *
4684 TGAATACTCATA-CTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTT
66 TGAATACTCA-AGCTAATCCCCATTCTTTTCAAGATTAGACACCAT-AACATAGTCTCCTCATTA
* * *
4748 GAATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGT
129 GAATACATCATAATGACGCTTTGGTTTCGCAAGAAAGGC-TTTTTCCCACCAATTTTTCTAAAGT
* * * *
4813 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATCCTAGTAAAGATCTTCGTTCATTTT-GTGAT
193 CTAAGTTCGTGACTCAAATGAGACAAACATGGATCCTAGTAAAGATATTCATTC-TTTTGGTCAT
** * *
4877 TAGGTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAA
257 TAGACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTATTTTGCATGAAA
*
4942 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCC
322 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTAAATAAGGCAAGCC
5001 TCGATTCTTG
Statistics
Matches: 341, Mismatches: 36, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
393 85 0.25
394 62 0.18
395 190 0.56
396 4 0.01
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (394 bp):
AAGAAAAGCTTTTCTTTCCACCGTTTTGGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACA
TGAATACTCAAGCTAATCCCCATTCTTTTCAAGATTAGACACCATAACATAGTCTCCTCATTAGA
ATACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCTTTTTCCCACCAATTTTTCTAAAGTCTA
AGTTCGTGACTCAAATGAGACAAACATGGATCCTAGTAAAGATATTCATTCTTTTGGTCATTAGA
CACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATCT
TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTAAATAAGGCAAGCCACGTTTGGGG
TTGC
Found at i:5760 original size:395 final size:395
Alignment explanation
Indices: 5095--5870 Score: 1180
Period size: 395 Copynumber: 2.0 Consensus size: 395
5085 TTGGTGTCGT
5095 AAGAAAAGCTTTTCTTTCCACCGTTTTGGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACA
1 AAGAAAAGCTTTTCTTTCCACCGTTTTGGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACA
* * * *
5160 TGAATACTCAAGCTAATCCCCATTCTTTTCAGGATTAGGCACCATAACGTAGTCTCCTCATTAGG
66 TGAATACTCAAGCTAATCCCCATTCTTTTCAAGATTAGACACCATAACATAGTCTCCTCATTAGA
* * * * *
5225 ATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTCCTACCAATTTTTGTAAAGTCT
131 ATACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGTCT
* *
5290 AAGTTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGATATTCATTCTTTTGGTCATTAG
196 AAGTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAAAGATATTCATTCTTTTGGTCATTAG
* *
5355 ACAGTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATC
261 ACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATC
* *
5420 TTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCTTTAAATAAGGCAAGCCACGTTTGGG
326 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCCACGTTTGGG
5485 GTGGC
391 GTGGC
* * * **
5490 AAGAAAAGCTTTT-TTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATTACAAACA
1 AAGAAAAGCTTTTCTTTCCACCGTTTTGGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACA
** * *
5554 TGAATACTCATA-CTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTT
66 TGAATACTCA-AGCTAATCCCCATTCTTTTCAAGATTAGACACCAT-AACATAGTCTCCTCATTA
* * *
5618 GAATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGT
129 GAATACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGT
* * * *
5683 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTT-GTGAT
194 CTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAAAGATATTCATTC-TTTTGGTCAT
** * *
5747 TAGGTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAA
258 TAGACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTATTTTGCATGAAA
*
5812 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATATTTTAAATAAGGCAAGCC
323 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCC
5871 TCGATTCTTG
Statistics
Matches: 342, Mismatches: 36, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
394 85 0.25
395 253 0.74
396 4 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (395 bp):
AAGAAAAGCTTTTCTTTCCACCGTTTTGGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACA
TGAATACTCAAGCTAATCCCCATTCTTTTCAAGATTAGACACCATAACATAGTCTCCTCATTAGA
ATACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGTCT
AAGTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAAAGATATTCATTCTTTTGGTCATTAG
ACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATC
TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCCACGTTTGGG
GTGGC
Found at i:5793 original size:158 final size:160
Alignment explanation
Indices: 5576--6296 Score: 445
Period size: 158 Copynumber: 4.5 Consensus size: 160
5566 CTAATCCCTG
** * * * * * * * * *
5576 TTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTGAATAGATCATAATGATGCTTTG
1 TTCTTTTCGTGATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGCTTTG
* * * *
5641 GTTTTGCAAGAAAGGCATTT-TTCCCACCAATTTTTC-TAAAGTCTAAGTTCGTGCCTCAAATGA
66 GTTTTGCAAGAAAAGCTTTTCTTCCCACCAATTTTTCATAAAATCAAAGTTCGTGCCTCAAATGA
* *
5704 GACAAACATGGATTCTAGTAAAGATCTTCG
131 GACAAACATGGATTCTAGTAAAGATCTCCA
* * * *
5734 TTCATTTT-GTGATTAGGTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTT
1 TTC-TTTTCGTGATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGCTTT
** * * ** * * * * *** * *
5798 TATTTTGCATGAAAATCTTTTCTTTGC-CCTATTTTCCTTAAAATCAAAGTTCATATTTTAAATA
65 GGTTTTGCAAGAAAAGCTTTTCTTCCCACCAATTTTTCATAAAATCAAAGTTCGTGCCTCAAATG
* * * * * *
5862 AGGCAAGCCTCGATTCTTGTAGCAG-TCTCCA
130 AGACAAACATGGATTCTAGTA-AAGATCTCCA
* * **
5893 TTCTTTTCATGATTTGG-ATGCCA-AAACACATTC-CCTTCATTAGGATGCATGATATTGATGCT
1 TTCTTTTCGTGATTAGGCA--CCATAAACACATTCTCC-TCATTAGGATAAATGATATTGATGCT
* * * * * *
5955 TTGGTGTCGTAAGAAAAGCTTTTCTTCCCACC--GTTTTCGATAAAATCAAAGTTTGT-CTCTTA
63 TTGGTTTTGCAAGAAAAGCTTTTCTTCCCACCAATTTTTC-ATAAAATCAAAGTTCGTGC-CTCA
* * *
6017 AAT-ACGACAAACATGAATACTCAAGCT--A-ATCCCCA
126 AATGA-GACAAACATGGAT--TCTAG-TAAAGATCTCCA
** * * * *
6052 TTCTTTTCAG-GATTAGGCACCAT-AACGTAGTCTCCTCATTAGGATACATCATATTGACGCTTT
1 TTCTTTTC-GTGATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGCTTT
* * * * * * * *
6115 GGTTTCGCAGGAAAGGCTTTT-TTCCTACCAATTTTT-GTAAAGTCTAAGTTCGTGACTCAAATG
65 GGTTTTGCAAGAAAAGCTTTTCTTCCCACCAATTTTTCATAAAATCAAAGTTCGTGCCTCAAATG
* * * *
6178 AGACAAACATGGATTCTTGTAATGATATTCA
130 AGACAAACATGGATTCTAGTAAAGATCTCCA
* * * ** * * *
6209 TTCTTTTGGTCATTAGACAGTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTT
1 TTCTTTTCGTGATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGCTTTG
* * *
6274 CTTTTGCATGAAAATCTTTTCTT
66 GTTTTGCAAGAAAAGCTTTTCTT
6297 TGTCCTATTT
Statistics
Matches: 416, Mismatches: 117, Indels: 59
0.70 0.20 0.10
Matches are distributed among these distances:
154 1 0.00
155 3 0.01
156 1 0.00
157 58 0.14
158 178 0.43
159 164 0.39
160 7 0.02
161 3 0.01
162 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (160 bp):
TTCTTTTCGTGATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGCTTTG
GTTTTGCAAGAAAAGCTTTTCTTCCCACCAATTTTTCATAAAATCAAAGTTCGTGCCTCAAATGA
GACAAACATGGATTCTAGTAAAGATCTCCA
Found at i:6637 original size:395 final size:395
Alignment explanation
Indices: 5965--6740 Score: 1144
Period size: 395 Copynumber: 2.0 Consensus size: 395
5955 TTGGTGTCGT
5965 AAGAAAAGCTTTTCTTCCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACA
1 AAGAAAAGCTTTTCTTCCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACA
* * * *
6030 TGAATACTCAAGCTAATCCCCATTCTTTTCAGGATTAGGCACCATAACGTAGTCTCCTCATTAGG
66 TGAATACTCAAGCTAATCCCCATTCTTTTCAAGATTAGACACCATAACATAGTCTCCTCATTAGA
* * * * **
6095 ATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTCCTACCAATTTTTGTAAAGTCT
131 ATACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTCAAAAGTCT
* *
6160 AAGTTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGATATTCATTCTTTTGGTCATTAG
196 AAGTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAAAGATATTCATTCTTTTGGTCATTAG
* *
6225 ACAGTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATC
261 ACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATC
* * *
6290 TTTTCTTTGTCCTATTTTCCTTACAATCAAAGTTCATCCTTTAAATAAGGCAAGCCACGTTTGGG
326 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCCACGTTTGGG
6355 GTGGC
391 GTGGC
** * * **
6360 AAGAAAAGCTTTT-TTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATTACAAACA
1 AAGAAAAGCTTTTCTTCCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACA
** * *
6424 TGAATACTCATA-CTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTT
66 TGAATACTCA-AGCTAATCCCCATTCTTTTCAAGATTAGACACCAT-AACATAGTCTCCTCATTA
* * *
6488 GAATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTCAAAAGT
129 GAATACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTCAAAAGT
* * * *
6553 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTT-GTGAT
194 CTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAAAGATATTCATTC-TTTTGGTCAT
** * * *
6617 TAGGTACTATAAATACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAA
258 TAGACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTATTTTGCATGAAA
*
6682 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATATTTTAAATAAGGCAAGCC
323 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCC
6741 TCGATTCTTG
Statistics
Matches: 338, Mismatches: 40, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
394 84 0.25
395 250 0.74
396 4 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (395 bp):
AAGAAAAGCTTTTCTTCCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACA
TGAATACTCAAGCTAATCCCCATTCTTTTCAAGATTAGACACCATAACATAGTCTCCTCATTAGA
ATACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTCAAAAGTCT
AAGTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAAAGATATTCATTCTTTTGGTCATTAG
ACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATC
TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCCACGTTTGGG
GTGGC
Found at i:7498 original size:395 final size:395
Alignment explanation
Indices: 6835--7610 Score: 1162
Period size: 395 Copynumber: 2.0 Consensus size: 395
6825 TTGGTGTCGT
6835 AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACA
1 AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACA
* * * *
6900 TGAATACTCAAGCTAATCCCCATTCTTTTCAGGATTAGGCACCATAACGTAGTCTCCTCATTAGG
66 TGAATACTCAAGCTAATCCCCATTCTTTTCAAGATTAGACACCATAACATAGTCTCCTCATTAGA
* * * * **
6965 ATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTCCTACCAATTTTTGTAAAGTCT
131 ATACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTCAAAAGTCT
* * *
7030 AAGTTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGATATTCATTCTTTTGGTCATTAG
196 AAGTTCGTGACTCAAATGAGACAAACATGGATCCTAGTAAAGATATTCATTCTTTTGGTCATTAG
* *
7095 ACACTATAAACACATTCTCCTCAATAGGATATATGATATTGATGATTTTCTTTTGCATGAAAATC
261 ACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATC
* *
7160 TTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCCTTAAATAAGGCAAGCCACGTTTGGG
326 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTAAATAAGGCAAGCCACGTTTGGG
7225 GTTGC
391 GTTGC
* * * **
7230 AAGAAAAGCTTTT-TTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATTACAAACA
1 AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACA
** * *
7294 TGAATACTCATA-CTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTT
66 TGAATACTCA-AGCTAATCCCCATTCTTTTCAAGATTAGACACCAT-AACATAGTCTCCTCATTA
* * *
7358 GAATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTCAAAAGT
129 GAATACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTCAAAAGT
* * * *
7423 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATCCTAGTAAAGATCTTCGTTCATTTT-GTGAT
194 CTAAGTTCGTGACTCAAATGAGACAAACATGGATCCTAGTAAAGATATTCATTC-TTTTGGTCAT
** * *
7487 TAGGTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAA
258 TAGACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTATTTTGCATGAAA
*
7552 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCC
323 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTAAATAAGGCAAGCC
7611 TCGATTCTTG
Statistics
Matches: 340, Mismatches: 38, Indels: 6
0.89 0.10 0.02
Matches are distributed among these distances:
394 85 0.25
395 251 0.74
396 4 0.01
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (395 bp):
AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACA
TGAATACTCAAGCTAATCCCCATTCTTTTCAAGATTAGACACCATAACATAGTCTCCTCATTAGA
ATACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTCAAAAGTCT
AAGTTCGTGACTCAAATGAGACAAACATGGATCCTAGTAAAGATATTCATTCTTTTGGTCATTAG
ACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATC
TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTAAATAAGGCAAGCCACGTTTGGG
GTTGC
Found at i:8436 original size:395 final size:394
Alignment explanation
Indices: 7707--8478 Score: 1172
Period size: 395 Copynumber: 2.0 Consensus size: 394
7697 GGTGTCGTAA
7707 AAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATACGACAACATGAA
1 AAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATACGACAACATGAA
* * * *
7772 TACTCAAGCTAATCCCCATTCTTTTCAGGATTAGGCACCATAACGTAGTCTCCTCATTAGGATAC
66 TACTCAAGCTAATCCCCATTCTTTTCAAGATTAGACACCATAACATAGTCTCCTCATTAGAATAC
* * * * *
7837 ATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTCCTACCAATTTTTGTAAAGTCTAAGT
131 ATCATAATGACGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGTCTAAGT
* * *
7902 TCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGATATTCATTCTTTTGGTCATTAGACAG
196 TCGTGACTCAAATGAGACAAACATGGATTCTAGTAAAGATATTCATTCTTTTGGTCATTAGACAC
*
7967 TATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTT
261 TATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATCTTTT
* *
8032 CTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCTTTAAATAAGGCAAGCCACGTTTGGGGTGG
326 CTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCCACGTTTGGGGTGG
8097 CAAG
391 CAAG
* * * **
8101 AAAAGCTTTT-TTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATTACAAACATGA
1 AAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATACGAC-AACATGA
** * *
8165 ATACTCATA-CTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTGAA
65 ATACTCA-AGCTAATCCCCATTCTTTTCAAGATTAGACACCAT-AACATAGTCTCCTCATTAGAA
* * *
8229 TAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGTCTA
128 TACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGTCTA
* * * *
8294 AGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTT-GTGATTAG
193 AGTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAAAGATATTCATTC-TTTTGGTCATTAG
** * *
8358 GTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATC
257 ACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATC
8423 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCC
322 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCC
8479 TCGATTCTTG
Statistics
Matches: 339, Mismatches: 35, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
393 41 0.12
394 53 0.16
395 241 0.71
396 4 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (394 bp):
AAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATACGACAACATGAA
TACTCAAGCTAATCCCCATTCTTTTCAAGATTAGACACCATAACATAGTCTCCTCATTAGAATAC
ATCATAATGACGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGTCTAAGT
TCGTGACTCAAATGAGACAAACATGGATTCTAGTAAAGATATTCATTCTTTTGGTCATTAGACAC
TATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATCTTTT
CTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCCACGTTTGGGGTGG
CAAG
Found at i:9242 original size:395 final size:392
Alignment explanation
Indices: 8573--9345 Score: 1131
Period size: 395 Copynumber: 2.0 Consensus size: 392
8563 TTGGTGTCGT
8573 AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTGTCTCTTAATACGACAAACATG
1 AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTGTCTCTTAATACGACAAACATG
* * * *
8638 AATACTCAAGCTAATCCCCATTCTTTTCAGGATTAGGCACCATAACGTAGTCTCCTCATTAGGAT
66 AATACTCAAGCTAATCCCCATTCTTTTCAAGATTAGACACCATAACATAGTCTCCTCATTAGAAT
* * * *
8703 ACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTCCTACCAATTTTGTAAAGTCTAAG
131 ACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTGTAAAGTCTAAG
* *
8768 TTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGATATTCATTCTTTTGGTCATTAGACA
196 TTCGTGACTCAAATGAGACAAACATGGATTCTAGTAAAGATATTCATTCTTTTGGTCATTAGACA
* *
8833 GTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTT
261 CTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATCTTT
* * *
8898 TCTTTGCCCTATTTTCCTTACAATCAATGTTCATCCTTTAAATAAGGCAAGCCACGTTTGGGGTG
326 TCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCCACGTTTGGGGTG
8963 GC
391 GC
* * * **
8965 AAGAAAAGCTTTT-TTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATTACAAACA
1 AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAG-TTGTCTCTT-AATACGACAAACA
** * *
9029 TGAATACTCATA-CTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTT
64 TGAATACTCA-AGCTAATCCCCATTCTTTTCAAGATTAGACACCAT-AACATAGTCTCCTCATTA
* * *
9093 GAATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTT-TCAAAAG
127 GAATACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTGT--AAAG
* * * *
9157 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTT-GTGA
190 TCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAAAGATATTCATTC-TTTTGGTCA
** * * *
9221 TTAGGTACTATAAATACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAA
254 TTAGACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTATTTTGCATGAA
9286 AATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCC
319 AATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCC
9346 TCGATTCTTG
Statistics
Matches: 338, Mismatches: 36, Indels: 11
0.88 0.09 0.03
Matches are distributed among these distances:
391 24 0.07
392 22 0.07
393 51 0.15
394 65 0.19
395 172 0.51
396 4 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (392 bp):
AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTGTCTCTTAATACGACAAACATG
AATACTCAAGCTAATCCCCATTCTTTTCAAGATTAGACACCATAACATAGTCTCCTCATTAGAAT
ACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTGTAAAGTCTAAG
TTCGTGACTCAAATGAGACAAACATGGATTCTAGTAAAGATATTCATTCTTTTGGTCATTAGACA
CTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATCTTT
TCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCCACGTTTGGGGTG
GC
Found at i:10092 original size:395 final size:395
Alignment explanation
Indices: 9488--10203 Score: 1121
Period size: 395 Copynumber: 1.8 Consensus size: 395
9478 AAGTTTGTCG
* * *
9488 AACATGAATACTCAAACTAATCCCCATTCTTTTCAGGATTAGGCACCATAACGTAGTCTCCTCAT
1 AACATGAATACTCAAACTAATCCCCATTCTTTTCAAGATTAGACACCATAACATAGTCTCCTCAT
* * * * * *
9553 TAGGATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTCCTACCAATTTTTGTAAA
66 TAGAATACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAA
* *
9618 GTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGATATTCATTCTTTTGGTCA
131 GTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAAAGATATTCATTCTTTTGGTCA
* *
9683 TTAGACAGTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAA
196 TTAGACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTATTTTGCATGAA
*
9748 AATCTTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCAT-CCTTTAAATAAGGCAAGCCACGT
261 AATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTTAAATAAGGCAAGCCACGT
9812 TTGGGGTGGCAAGAAAAGCTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
326 TTGGGGTGGCAAGAAAAGCTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
9877 TTACA
391 TTACA
* ** *
9882 AACATGAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCA
1 AACATGAATACTCAAACTAATCCCCATTCTTTTCAAGATTAGACACCAT-AACATAGTCTCCTCA
* * * *
9947 TTTGAATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAA
65 TTAGAATACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAA
* * *
10012 AGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTT-GT
130 AGTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAAAGATATTCATTC-TTTTGGT
* ** * *
10076 GATTAGGTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATG
194 CATTAGACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTATTTTGCATG
*
10141 AAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTTAAATAAGGCAAGCC
259 AAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTTAAATAAGGCAAGCC
10204 TCGATTCTTG
Statistics
Matches: 288, Mismatches: 31, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
394 44 0.15
395 222 0.77
396 22 0.08
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (395 bp):
AACATGAATACTCAAACTAATCCCCATTCTTTTCAAGATTAGACACCATAACATAGTCTCCTCAT
TAGAATACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAA
GTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAAAGATATTCATTCTTTTGGTCA
TTAGACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTATTTTGCATGAA
AATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTTAAATAAGGCAAGCCACGT
TTGGGGTGGCAAGAAAAGCTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
TTACA
Found at i:10125 original size:158 final size:161
Alignment explanation
Indices: 9908--10629 Score: 442
Period size: 158 Copynumber: 4.5 Consensus size: 161
9898 CTAATCCCTG
** * * * * * * * * *
9908 TTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTGAATAGATCATAATGATGCTTTG
1 TTCTTTTCGTGATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGCTTTG
* * * *
9973 GTTTTGCAAGAAAGGCATTT-TTCCCACCAATTTTTC-TAAAGTCTAAGTTCGTGC-CTCAAATG
66 GTTTTGCAAGAAAAGCTTTTCTTCCCACCAATTTTTCATAAAATCAAAGTTCGTGCTCTCAAATG
* *
10035 AGACAAACATGGATTCTAGTAAAGATCTTCG
131 AGACAAACATGGATTCTAGTAAAGATCTCCA
* * * *
10066 TTCATTTT-GTGATTAGGTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTT
1 TTC-TTTTCGTGATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGCTTT
** * * ** * * * * * * *
10130 TATTTTGCATGAAAATCTTTTCTTTGC-CCTATTTTCCTTAAAATCAAAGTTCATACTTTTAAAT
65 GGTTTTGCAAGAAAAGCTTTTCTTCCCACCAATTTTTCATAAAATCAAAGTTCGTGCTCTCAAAT
* * * * * * *
10194 AAGGCAAGCCTCGATTCTTGTAGCAG-TCTCCA
130 GAGACAAACATGGATTCTAGTA-AAGATCTCCA
* * * **
10226 TTCTTTTCATGATTTGG-ATGCCA-AAACACATTC-CATTCATTAGGATGCATGATATTGATGCT
1 TTCTTTTCGTGATTAGGCA--CCATAAACACATTCTC-CTCATTAGGATAAATGATATTGATGCT
* * * * * *
10288 TTGGTGTCGTAAGAAAAGCTTTTCTTCCCACC--GTTTTCGATAAAATCAAAGTTTGT-CTCTTA
63 TTGGTTTTGCAAGAAAAGCTTTTCTTCCCACCAATTTTTC-ATAAAATCAAAGTTCGTGCTCTCA
* * *
10350 AAT-ACGACAAACATGAATACTCAAGCT--A-ATCCCCA
127 AATGA-GACAAACATGGAT--TCTAG-TAAAGATCTCCA
** * * * *
10385 TTCTTTTCAG-GATTAGGCACCAT-AACGTAGTCTCCTCATTAGGATACATCATATTGACGCTTT
1 TTCTTTTC-GTGATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGCTTT
* * * * * * * *
10448 GGTTTCGCAGGAAAGGCTTTT-TTCCTACCAATTTTT-GTAAAGTCTAAGTTCGTG-ACTCAAAT
65 GGTTTTGCAAGAAAAGCTTTTCTTCCCACCAATTTTTCATAAAATCAAAGTTCGTGCTCTCAAAT
* * * *
10510 GAGACAAACATGGATTCTTGTAATGATATTCA
130 GAGACAAACATGGATTCTAGTAAAGATCTCCA
* * * ** * * *
10542 TTCTTTTGGTCATTAGACAGTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTT
1 TTCTTTTCGTGATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGCTTTG
* * *
10607 CTTTTGCATGAAAATCTTTTCTT
66 GTTTTGCAAGAAAAGCTTTTCTT
10630 TGCCCTATTT
Statistics
Matches: 417, Mismatches: 117, Indels: 59
0.70 0.20 0.10
Matches are distributed among these distances:
154 1 0.00
155 3 0.01
156 1 0.00
157 58 0.14
158 168 0.40
159 73 0.18
160 103 0.25
161 9 0.02
162 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (161 bp):
TTCTTTTCGTGATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGCTTTG
GTTTTGCAAGAAAAGCTTTTCTTCCCACCAATTTTTCATAAAATCAAAGTTCGTGCTCTCAAATG
AGACAAACATGGATTCTAGTAAAGATCTCCA
Found at i:13349 original size:392 final size:390
Alignment explanation
Indices: 12689--13459 Score: 1102
Period size: 392 Copynumber: 2.0 Consensus size: 390
12679 TTGGTGTCGT
*
12689 AAGAAAAGCTTTCTTCCACCGTTTTCGATAAATCAAAGTTTGTCTCTTAAATACGACAAACATGA
1 AAGAAAAGCTTTCTTCCACCGTTTTCGATAAATCAAAGTTTCTCTCTTAAATACGACAAACATGA
* * *
12754 ATACTCAACCGCTAATCCCCATTCTTTCAGGATTAGGCACCATAACAGTAGTCTCCTCATTAGGA
66 ATACTCAA-C-CTAATCCCCATTCTTTCAAGATTAGACACCATAACAGTAGTCTCCTCATTAGAA
* * * * *
12819 TACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTCCTACCAATTTTTGTAAAGTCTAA
129 TACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCATTTTCCCACCAATTTTTCTAAAGTCTAA
* *
12884 GTTCTTGACTCAAATGAGACAAACATGGATTCTTGTAATGATATTCATTCTTTTGGTCATTAGAC
194 GTTCTTGACTCAAATGAGACAAACATGGATTCTAGTAAAGATATTCATTCTTTTGGTCATTAGAC
* *
12949 AGTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTT
259 ACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATCTT
* * *
13014 TTCTTTGTCCTATTTTCCTTACAATCAAAGTTCATCCTTTAAATAAGGCAAGCCCGTTTGGGGTG
324 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCCCGTTTGGGGTG
13079 GC
389 GC
* * * **
13081 AAGAAAAGCTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTCTCTCTTAAATATTACAAACAT
1 AAGAAAAGC-TTTCTTCCACCGTTTTCGATA-AATCAAAGTTTCTCTCTTAAATACGACAAACAT
** * *
13146 GAATACTCATA-CTAATCCCTGTTCTTTCAAGATTAGACACCATAAACA-TAGTCTTCTCATTTG
64 GAATACTCA-ACCTAATCCCCATTCTTTCAAGATTAGACACCAT-AACAGTAGTCTCCTCATTAG
* * *
13209 AATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTCCCACCAAGTTTTTCT-AAGTC
127 AATACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCATTTTCCCACCAA-TTTTTCTAAAGTC
* * * *
13273 TAAGTTC-TGCCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTT-GTGAT
191 TAAGTTCTTG-ACTCAAATGAGACAAACATGGATTCTAGTAAAGATATTCATTC-TTTTGGTCAT
** * *
13336 TAGGTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAA
254 TAGACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTATTTTGCATGAAA
13401 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCC
319 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCC
13460 TCGATTCTTG
Statistics
Matches: 336, Mismatches: 36, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
391 2 0.01
392 262 0.78
393 32 0.10
394 39 0.12
395 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (390 bp):
AAGAAAAGCTTTCTTCCACCGTTTTCGATAAATCAAAGTTTCTCTCTTAAATACGACAAACATGA
ATACTCAACCTAATCCCCATTCTTTCAAGATTAGACACCATAACAGTAGTCTCCTCATTAGAATA
CATCATAATGACGCTTTGGTTTCGCAAGAAAGGCATTTTCCCACCAATTTTTCTAAAGTCTAAGT
TCTTGACTCAAATGAGACAAACATGGATTCTAGTAAAGATATTCATTCTTTTGGTCATTAGACAC
TATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATCTTTT
CTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGGCAAGCCCGTTTGGGGTGGC
Done.