Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2547
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 500834
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.34
File 2 of 3
Found at i:167937 original size:17 final size:17
Alignment explanation
Indices: 167915--167948 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
167905 AACATAGTCT
167915 TCACATTAGGATACACA
1 TCACATTAGGATACACA
167932 TCACATTAGGATACACA
1 TCACATTAGGATACACA
167949 ATATTGAAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.24, G:0.12, T:0.24
Consensus pattern (17 bp):
TCACATTAGGATACACA
Found at i:168852 original size:44 final size:44
Alignment explanation
Indices: 168789--168876 Score: 158
Period size: 44 Copynumber: 2.0 Consensus size: 44
168779 ATCGTTTTTG
168789 ATAAAATCAAAGTTTATTTCCTAAATAAGACAAACTAGCACGAA
1 ATAAAATCAAAGTTTATTTCCTAAATAAGACAAACTAGCACGAA
* *
168833 ATAAAATCAAAGTTTATTTCCTAAATAAGATAAACTTGCACGAA
1 ATAAAATCAAAGTTTATTTCCTAAATAAGACAAACTAGCACGAA
168877 TCCCATTCTC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.49, C:0.15, G:0.09, T:0.27
Consensus pattern (44 bp):
ATAAAATCAAAGTTTATTTCCTAAATAAGACAAACTAGCACGAA
Found at i:168858 original size:24 final size:24
Alignment explanation
Indices: 168789--168860 Score: 64
Period size: 24 Copynumber: 3.2 Consensus size: 24
168779 ATCGTTTTTG
168789 ATAAAATCAAAGTTTATTTCCTAA
1 ATAAAATCAAAGTTTATTTCCTAA
* * * *
168813 ATAAGA-CAAA--CTA--GCACGAA
1 ATAAAATCAAAGTTTATTTC-CTAA
168833 ATAAAATCAAAGTTTATTTCCTAA
1 ATAAAATCAAAGTTTATTTCCTAA
168857 ATAA
1 ATAA
168861 GATAAACTTG
Statistics
Matches: 34, Mismatches: 8, Indels: 12
0.63 0.15 0.22
Matches are distributed among these distances:
19 1 0.03
20 8 0.24
21 6 0.18
23 6 0.18
24 12 0.35
25 1 0.03
ACGTcount: A:0.50, C:0.14, G:0.07, T:0.29
Consensus pattern (24 bp):
ATAAAATCAAAGTTTATTTCCTAA
Found at i:170636 original size:18 final size:18
Alignment explanation
Indices: 170613--170648 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
170603 GAATGGGATA
170613 CTAAAACGGATTCCCTTC
1 CTAAAACGGATTCCCTTC
170631 CTAAAACGGATTCCCTTC
1 CTAAAACGGATTCCCTTC
170649 TTTAGGAGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.33, G:0.11, T:0.28
Consensus pattern (18 bp):
CTAAAACGGATTCCCTTC
Found at i:182190 original size:474 final size:475
Alignment explanation
Indices: 180114--188180 Score: 8066
Period size: 474 Copynumber: 17.1 Consensus size: 475
180104 TGGAAATCTT
* * * *
180114 TTCTTTTGAAGATTGAGAAGCTAAAACACATTCCCTTCATTAGG-GTGCATGACATTGATGCTTT
1 TTCTTTTCAAGATTGGGAAGCTAAAACACATTCACTTCATTAGGAG-ACATGACATTGATGCTTT
* * * * *
180178 GGTGTTGCAACAAAAGCTTTTCTTTCTACCATTTTTTACAGAATCAAAGTTTATCTCTTAAATAA
65 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAA
* * * * * *
180243 GACTAACATAAATACTCATACTAATCTCCATTCTTTTTAGGATTAGGGACCATTAACATAGTCTT
130 GACAAACATGAATACTCATACTAATCCCCATTCTTTTTCGGATTAGGCACCATAAACATAGTCTT
* ** * * * ** *
180308 CACATTTTGATACACGATATTGATGCTTTAG-TCCTGCAAAAAAAAAAGTATTTTTCCCACCGAT
195 CTCATTAGGATACACGATATTGATGCTTTGGTTTCT-C----AAGAAAGGCTTTTTCCCACCAAT
* * * * *
180372 TTTTGCAAAGCCTAAGTTTGTTCCTTAAATGAGATAAACATGGATTCTTA-TAATGATCTTCATT
255 TTTTGTAAAGCCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTC-TAGTAATGATCTTCATT
** * * *
180436 CATTTTGTGATTACACACCGT-AACACATTTTCCTCATTAGGATAAATGATGTTGATGA-TTT-T
319 CATTTTGTGATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCT
* * * *
180498 TTTCCATGGAAATCTTTTCTTTACCCTTTTTTCCTGGAAATCAAAGTTCATCCCTTAAACAAGAC
384 TTTCCATGGAAATCTTTTCTTTGCCCTATTTTCCTTGAAATCAAAGTTCATCCCTTAAATAAGAC
* * *
180563 ATGCATCGATTCTCATAATAGTCTCTA
449 AAGCATCGATTCTCATAACAGTCTCCA
** * * * * *
180590 TTCTTTTTGAGATTGGGAACCAAAAACACCTTCACTTCATCAAGAGACATGACATTGATGCTTTG
1 TTCTTTTCAAGATTGGGAAGCTAAAACACATTCACTTCATTAGGAGACATGACATTGATGCTTTG
* * * ** * * * * *
180655 GTGCCGCGA-AAAAGCCTTTTCTTCCCACGGTTTTTGATACAATCAAGGTTTGTCTTTTAAAAAA
66 GTGTCGCAAGAAAAG-CTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAA
* * ** * *
180719 GATAAACACGAATACTTGTACTAATCCCTATTC-TTTTCAGGATTAGTCACCATAAACATAGTCT
130 GACAAACATGAATACTCATACTAATCCCCATTCTTTTTC-GGATTAGGCACCATAAACATAGTCT
* ** * * **
180783 TCTTATTAGGATACATAATATTGATGCTTTGGTTT-TCCAAGAAAGGCATTCTTCTCAAAAATGT
194 TCTCATTAGGATACACGATATTGATGCTTTGGTTTCT-CAAGAAAGGC-TTTTTCCCACCAAT-T
* * *
180847 TTTATAAAGCCTAACTTCGTGCCTTAAATGAGACAAACAAAGATTCCAAACATGGATTCTAGTAA
256 TTTGTAAAGCCTAAGTTCGTGCCTCAAAT--G--------AGA---CAAACATGGATTCTAGTAA
* ** *
180912 TGATCTTCATTCATTTTGTGATTAGGCACCATAAACACATTCCCCTTTTTAGGAAAAATGATATT
308 TGATCTTCATTCATTTTGTGATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATT
* * * * *
180977 GATGATTTTC-TTT-CGTGTAAAATCTTTTC--TGCCCTATTTTCCTTCAAACCAAAGTTCAACC
373 GATGATTTTCTTTTCCATG-GAAATCTTTTCTTTGCCCTATTTTCCTTGAAATCAAAGTTCATCC
* * * * *
181038 CTTAAATAAGACAAGGATCGAATCTTATAACAATGTCCA
437 CTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCA
* * * * * *
181077 TTCTTTTGAAGATTGAGAAGCTAAAACGCATTC-CATCCATTAGGATG-CTTTACATTGATGCTT
1 TTCTTTTCAAGATTGGGAAGCTAAAACACATTCAC-TTCATTAGGA-GACATGACATTGATGCTT
* * *
181140 TGGTGTTGTAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCTCTTAAATA
64 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATA
** * * * *
181205 AGACAAACACAAATACTC--ACTAATCCCAATTCTTTTTAGGATTACGCACCATTAACATAGTCT
129 AGACAAACATGAATACTCATACTAATCCCCATTCTTTTTCGGATTAGGCACCATAAACATAGTCT
* * * *
181268 T-TAAATTAGGATACACGATATTGATGCTTTGGTTT-TGCAAGTAAGGTATTTTTCTCACCAATT
194 TCT-CATTAGGATACACGATATTGATGCTTTGGTTTCT-CAAGAAAGG-CTTTTTCCCACCAATT
* * * *
181331 TTAGTAAAGTCTAAGTTTGTGCCTTAAATGAGACAAACATGGATTCTTA-TAATGATCTTCATTC
256 TTTGTAAAGCCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTC-TAGTAATGATCTTCATTC
* * * *
181395 ATTTTGTGATTATGCACCAT-AACACATTCTCCTCATTAGAAAAAATGATATTGACGATTTTCTT
320 ATTTTGTGATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTT
* * * * *** * *
181459 TTCCATGAAAAACTTTTCTTTGCCTTATTTTCCTTGGAATCAAAGTTCATTTGTTAAACAAGATA
385 TTCCATGGAAATCTTTTCTTTGCCCTATTTTCCTTGAAATCAAAGTTCATCCCTTAAATAAGA-C
181524 AAG-ATCGATTC-C-TGCAACAGTCTCCA
449 AAGCATCGATTCTCAT--AACAGTCTCCA
** * * * *
181550 TTCTTTTCGTGATTTGGAAGCTAAAACACACTT-TCTTCATTAGGATACATGACATTGATGATTT
1 TTCTTTTCAAGATTGGGAAGCTAAAACACA-TTCACTTCATTAGGAGACATGACATTGATGCTTT
*
181614 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTAATAGAATCAAAGTTTATCTCTTAAATAA
65 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAA
* * * * * *
181679 GACAAACATAAATACTCATACTAATCCCTACTCTTTTTCGAATTATGCACTATAAACATAGTCTT
130 GACAAACATGAATACTCATACTAATCCCCATTCTTTTTCGGATTAGGCACCATAAACATAGTCTT
* * *
181744 CTCATTAGGATACACGATATTAATGCTTTGGTTTCTCAAGAAATGCTTTCTTCCCACCAATTTTG
195 CTCATTAGGATACACGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTT-TTCCCACCAATTTTT
* * *
181809 GTAAAGTCTAAGTTCAG-GCCTCAAATGAGACAAACATGGATTCTAGTAATGATTTTCATTTATT
259 GTAAAGCCTAAGTTC-GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATT
* * * *
181873 TTGTGATTAGGCACCATAAACACATTCTCATCATTAGGAAAAATGATATTAATGATTTTCTTTTG
323 TTGTGATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTC
* *
181938 CATGGAAATC-TTT-TTTGCCCTATTTTCCTTCAAATCAAATTTCATCCCTTAAATAAGACAAGC
388 CATGGAAATCTTTTCTTTGCCCTATTTTCCTTGAAATCAAAGTTCATCCCTTAAATAAGACAAGC
** *
182001 ATTAATTCTCGTAACAGTCTCCA
453 ATCGATTCTCATAACAGTCTCCA
* * * * * * * * *
182024 TTCTTTTAAAGATTAGGAAGCTAAAACGCAATCTCTTCTTTATGATACATGATATTGATGCTTTG
1 TTCTTTTCAAGATTGGGAAGCTAAAACACATTCACTTCATTAGGAGACATGACATTGATGCTTTG
* * ** * * * *
182089 GTGTCACAAGAAAAGCTTTTGTTTTTACCGTTTTTGATAAAATTAAAGTTCATCTCTTAAATAAG
66 GTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAG
* ** * *
182154 ATAAACACCAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATTAACATAGTCTTC
131 ACAAACATGAATACTCATACTAATCCCCATTCTTTTTCGGATTAGGCACCATAAACATAGTCTTC
* * * * * *
182219 ACATTAAGATACACGATATTGATGCTTTGGTTCCGCAAGAAAGTCATTTTTCCCACCAATTTTGG
196 TCATTAGGATACACGATATTGATGCTTTGGTTTCTCAAGAAAGGC-TTTTTCCCACCAATTTTTG
* * * * * *
182284 AAAAGCCTAAGTTCGTGCCTCAATTGAGACAAACTTAGATTCTTGTAATGATCTTCACTCATTTT
260 TAAAGCCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTT
* * *
182349 GTGATTAGGCTCTATAAACACATTCTCCTCATTAGGATAAATTATATTGATGATTTTCTTTTCCA
325 GTGATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCCA
* * * * *
182414 TGAAAATCTTTTCTTTGCCATATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGGAT
390 TGGAAATCTTTTCTTTGCCCTATTTTCCTTGAAATCAAAGTTCATCCCTTAAATAAGACAAGCAT
** **
182479 TAATTCTTGTAACAGTCTCCA
455 CGATTCTCATAACAGTCTCCA
* * * *
182500 TT-TATTTGAAGAATGGGAAGCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
1 TTCT-TTTCAAGATTGGGAAGCTAAAACACATTCACTTCATTAGGAGACATGACATTGATGCTTT
* *
182564 GGTGTCGCAAGAAAAGCTCTTCTTTCCACCAATTTTT-ATAAAATCAAAGTTTATCTCTCTTAAA
65 GGTGTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAGAATCAAAGTTTA--TCTCTTAAA
** * **
182628 TAAGACAAACACAAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATTGACATAGT
127 TAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTCGGATTAGGCACCATAAACATAGT
* ** * * * * * *
182693 CTTCACATTACAATACATGATATTGATGCTTTAGTTTCGCAAAAAAGTCATTTTTCCCATCAATT
192 CTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCTCAAGAAAGGC-TTTTTCCCACCAATT
* * * * * *
182758 TTTGTAAAGCCTAAGTCCGTGCCTCAAACGAGACAAACTTAGACTCTTGTAATGATCTTCATTCA
256 TTTGTAAAGCCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA
* * *
182823 TTTTGTGATTAGGC-CCAATAAACACATTCTCCTTATCAGGATAAATTATATTGATGATTTTCTT
321 TTTTGTGATTAGGCACC-ATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTT
** * * * * *
182887 TTCCATCAAAATCTTTTCTTTGTCCTATTTTTCTT-AAAGTTAAAGTTCATCCCTTAAATAATAT
385 TTCCATGGAAATCTTTTCTTTGCCCTATTTTCCTTGAAA-TCAAAGTTCATCCCTTAAATAAGAC
* * *
182951 AAGCACCGATTCTCGTAATAGTCTCCA
449 AAGCATCGATTCTCATAACAGTCTCCA
* ** * * * * *
182978 CTCTTTTCAAGATTAAGAA-CAAAAAACACATTCCCTTCATTATGATATATGACATTGATGCTTT
1 TTCTTTTCAAGATTGGGAAGC-TAAAACACATTCACTTCATTAGGAGACATGACATTGATGCTTT
* * * * *
183042 GGTGTCGCAA-AGAAAGCTTTTCCTTCCACCCTTTTAGATAGAATCAAAGCTTGTCTCTTAAATA
65 GGTGTCGCAAGA-AAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATA
* * *
183106 AGA-AAAGCAAGAATAGTCATACTAATCTCCATTC-TTTTC----T-GG------AAACATAGTC
129 AGACAAA-CATGAATACTCATACTAATCCCCATTCTTTTTCGGATTAGGCACCATAAACATAGTC
* * * *
183158 TTCTCATAAGGATATACGATATTAATGCTTTGGTTT-TACAAGAAAGG-TAGTTTTCCTACCAAT
193 TTCTCATTAGGATACACGATATTGATGCTTTGGTTTCT-CAAGAAAGGCT--TTTTCCCACCAAT
* *
183221 TTTTGTAAA-CTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAAAGATCTTCATT
255 TTTTGTAAAGC-CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
* *
183285 CATTTTGGGATTAGGCACCATAAACACATTCTCCTCATTAGCATAAATGATATTGATGATTTTCT
319 CATTTTGTGATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCT
* * * *
183350 TTTCCATGCAAATATTTTCTTTGCCCTATTTTCAC-TAAAATCAAAGTTCATCCCTTATATAAGA
384 TTTCCATGGAAATCTTTTCTTTGCCCTATTTTC-CTTGAAATCAAAGTTCATCCCTTAAATAAGA
* * * *
183414 CAAGCATCGGTTCTCATAAAAGTATTCA
448 CAAGCATCGATTCTCATAACAGTCTCCA
** * * * * * *
183442 TT-TTTTCCAAGATTAAGAACCAAAAACCCCTTCACTTCCTTAGGAGACATGACATTGATACTTT
1 TTCTTTT-CAAGATTGGGAAGCTAAAACACATTCACTTCATTAGGAGACATGACATTGATGCTTT
* * ** * * ** * *
183506 GGTGCCACAAGAAAAGCTTTTCTTTCCATTATTTTTTATAGAAAT-AAGGTTCGTCTCTTGAGTA
65 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAG-AATCAAAGTTTATCTCTTAAATA
* * * * *
183570 AGACAAATATGAATAATCATACTAATCCCTATTC-TTTTCAAGATTAGGTACCATAAACATAGTC
129 AGACAAACATGAATACTCATACTAATCCCCATTCTTTTTC-GGATTAGGCACCATAAACATAGTC
* * * *
183634 TTCCCATTAGGATACATGATAGTGATGCTTTGGTTT-TGCAAGAAAGACATTTTTCCCACCAATT
193 TTCTCATTAGGATACACGATATTGATGCTTTGGTTTCT-CAAGAAAGGC-TTTTTCCCACCAATT
* *
183698 TTTGTAAAGCCTAAGCTT-GTGTCTTAAATGAGACAAACATGGATTCTTA-TAATGATCTTCATT
256 TTTGTAAAGCCTAAG-TTCGTGCCTCAAATGAGACAAACATGGATTC-TAGTAATGATCTTCATT
* * * *
183761 TATTTTCTGATTACGCACCA-AAACACATTCTCCTCGTTAGGATAAATGATATTGATGATTTTCT
319 CATTTTGTGATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCT
* * *
183825 TTTCCATGGAAATCTTTTCTTTGGCCTATTTTCCTTGAAATCAAAGTTCATCCTTTAAATAATAC
384 TTTCCATGGAAATCTTTTCTTTGCCCTATTTTCCTTGAAATCAAAGTTCATCCCTTAAATAAGAC
* *
183890 AAGCATCAATTCTCATTAA-AGTCTCTA
449 AAGCATCGATTCTCA-TAACAGTCTCCA
* * * * * * * *
183917 TTCTTTCCAAGATTGGGAACCAAAAACCCCTTCACTTCCTCAGGAGAGATGACATTGATGCTTTG
1 TTCTTTTCAAGATTGGGAAGCTAAAACACATTCACTTCATTAGGAGACATGACATTGATGCTTTG
* * * * * * * *
183982 ATGTTGCAAGAAAAGCTTTTCTTTCTACCGTTTATGATAGAATCAAGGTTTGTCTCTTAAGTAAG
66 GTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAG
* * *
184047 ACAAACATGAATAATCATACTAATCCCCATT-TTTTTCAAGATTAGGCACCATATACATAGTCTT
131 ACAAACATGAATACTCATACTAATCCCCATTCTTTTTC-GGATTAGGCACCATAAACATAGTCTT
* * * * *
184111 CACATTAGAATACATGATATTGATGTTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTT
195 CTCATTAGGATACACGATATTGATGCTTTGGTTTCTCAAGAAAGGC-TTTTTCCCACCAATTTTT
* * ** * * *
184176 GTAAAGCCTAATTTTGTAACTCAAAAGAAACAAACATGGATTCTTA-TAATAATCTTCATTCATT
259 GTAAAGCCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTC-TAGTAATGATCTTCATTCATT
** * *
184240 TTGTGATTACACACCAT-AACACATTCTCCTCATTAGGATAAATGATATTAATGATTTTC-CTTC
323 TTGTGATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTC
184303 CATGGAAATCTTTTCTTTGCCCTATTTTCCTTGAAATCAAAGTTCATCCCTTAAATAAGACAAGC
388 CATGGAAATCTTTTCTTTGCCCTATTTTCCTTGAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* *
184368 ATTGATTCTCATAACAATCTCCA
453 ATCGATTCTCATAACAGTCTCCA
* * * * *
184391 TTCTTTTCGAGATTGGGAACCAAAAACACCTTCAATTCATTAGGAGACATGACATTGATGCTTTG
1 TTCTTTTCAAGATTGGGAAGCTAAAACACATTCACTTCATTAGGAGACATGACATTGATGCTTTG
* ** * * *
184456 GTGTCGTAAGAAAAGCTTTT-TTTCCCACGGTTTTTGATAGAATCAAGGTTTGTCTCTTAAAAAA
66 GTGTCGCAAGAAAAGCTTTTCTTT-CCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAA
* **
184520 GACAAACATGAATACTCAGACTAATCCTAATTC-TTTTCAGGATTAGGCACCATAAACATAGTCT
130 GACAAACATGAATACTCATACTAATCCCCATTCTTTTTC-GGATTAGGCACCATAAACATAGTCT
* * * * *
184584 TC-CATTAGTAT-CTATGATATTGATGTTTTGGTATT-GCAAGAAAGGCTTTTATCCCACTAATT
194 TCTCATTAGGATAC-ACGATATTGATGCTTTGGT-TTCTCAAGAAAGGCTTTT-TCCCACCAATT
* * * * * * *
184646 TTTGTAAAGTCTAAGTTCATGTCAT-AAATGAGACAAATATAGATTCTAGTAATGGTCTTCATTT
256 TTTGTAAAGCCTAAGTTCGTG-CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTC
* ** * *
184710 ATTTTGTGATTAGGCACCATAAACGCATTCTTTTCATTAGGA-AAACGATATTGAGGATTTTCTT
320 ATTTTGTGATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTT
* * *
184774 TTGCATGGAAATC-TTT-TTTGCCCTATTTTGCTTCG-AATCAAAGTTCATCCCTTAAATAAGAT
385 TTCCATGGAAATCTTTTCTTTGCCCTATTTTCCTT-GAAATCAAAGTTCATCCCTTAAATAAGAC
* *
184836 AAGCATCGATTCTCATAAGAATCTCCA
449 AAGCATCGATTCTCATAACAGTCTCCA
* *** * * ** * *
184863 TTCTTTTAAAGATTAAAAAGCTAAAATGTA-ATAC-CTTTTTTTAGGATACATAACATTGATGCT
1 TTCTTTTCAAGATTGGGAAGCTAAAA--CACATTCAC-TTCATTAGGAGACATGACATTGATGCT
** * * * * *
184926 TTGGCATCGCAAGAAAACCTTTT-TTTCTACTATTTTTGATAAAATCAAAGTTTATCTCCTAAAT
63 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAAT
* * * * *
184990 AAGACAAAC-T---T--GCAT--GAAT-CCTATTCTTTTTCGGATTAGGCACCGTAAACAAAGTC
128 AAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTCGGATTAGGCACCATAAACATAGTC
* * * *
185046 TTCTCATTAGGGTACACGATATAGATGCTTTGGTTTCAT-AGGAAAGGCTTTCTTCCCACTAATT
193 TTCTCATTAGGATACACGATATTGATGCTTTGGTTTC-TCAAGAAAGGCTTT-TTCCCACCAATT
* * * *
185110 TTGGTAAAGTCTAAGTTCGTGCCTCAAATGAGAAAAACATGGATTCTAGTAAGGAT-TATCATTC
256 TTTGTAAAGCCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCT-TCATTC
* * * * * *
185174 ATTTTATGATTAGGCATCGTAACCATATTCTCGTCATTAGGAT-AA--ATATTGATGATTTT-TT
320 ATTTTGTGATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTT
* * * * * * **
185235 TTGCGTGAAAATCTTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAAAGG
385 TTCCATGGAAATCTTTTCTTTGCCCTATTTTCCTTGAAATCAAAGTTCATCCCTTAAATAAGACA
* * * * *
185300 GGCATCAATTCTCGTAACAGCCTCTA
450 AGCATCGATTCTCATAACAGTCTCCA
* * * * **** * * * ** *
185326 TTTTTTTAAAGATTGGGATGCTATAATGTTTTCCCTTCTTTAGAAGACATGATGTTGATGCTTTA
1 TTCTTTTCAAGATTGGGAAGCTAAAACACATTCACTTCATTAGGAGACATGACATTGATGCTTTG
* * * * * * *
185391 GTGTTGCAAGAAAAACTTTTGTTTCTACCATTTTTGATAGAACCGAAGTTTATCTCTAAAATAAG
66 GTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAG
* * * *** * * *
185456 ATAAACATGAATACTCATACTAATCCCCATTCTTTTTTGGATTAGGTATTGTATATATAGTCTTT
131 ACAAACATGAATACTCATACTAATCCCCATTCTTTTTCGGATTAGGCACCATAAACATAGTCTTC
* * *
185521 TCATTAGGATACACGATATTGACGCTTTCGTTT-TACAAGAAAGGCCTTTTCCCCACCAATTTTT
196 TCATTAGGATACACGATATTGATGCTTTGGTTTCT-CAAGAAAGG-CTTTTTCCCACCAA-TTTT
*
185585 TGTAAAGCCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTA-TCATTGATCTTCATTCAT
258 TGTAAAGCCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT-AATGATCTTCATTCAT
* * *
185649 TTTGTGATTAGGCACCATAAATACATTCTCCTCATTAGGAAAAATGATATTGATGATTTTATTTT
322 TTTGTGATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTT
* * * * * *
185714 GCATGGAAATCTTTTC--TACCCTATTTTCTTTCAAATCAAATTTAATCCCTTAAATAAGACAAT
387 CCATGGAAATCTTTTCTTTGCCCTATTTTCCTTGAAATCAAAGTTCATCCCTTAAATAAGACAA-
* *
185777 G-ATCGATTCTTATAATAGTCTCCA
451 GCATCGATTCTCATAACAGTCTCCA
* * * * *
185801 TTCTTTTGAAGATTGGGAGGCTAAAACACATTCCCTTCATTAGGACACATGACATTAATGCTTTG
1 TTCTTTTCAAGATTGGGAAGCTAAAACACATTCACTTCATTAGGAGACATGACATTGATGCTTTG
* *
185866 GTATCGCAAGAAAAGCTTTTCTTTCCACCATTTTT-AT-GCAATCAAAGTTTATCTCTTAATTAA
66 GTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAG-AATCAAAGTTTATCTCTTAAATAA
** * * * * ** *
185929 GACAAACACAAATACTTAAACTAATCTCCATTCTTTTTAGGATTAAACACCATTAACATAGTCTT
130 GACAAACATGAATACTCATACTAATCCCCATTCTTTTTCGGATTAGGCACCATAAACATAGTCTT
* ** * ** * * * * *
185994 CACATTTTGATGCTTGATATTTATGTTTTGGTTTCACAAAAAAAGGCATTTTTCCCACCATTTTT
195 CTCATTAGGATACACGATATTGATGCTTTGGTTTCTC-AAGAAAGGC-TTTTTCCCACCAATTTT
* * *
186059 TGTATAGCCTAAGTTTGTGCCTTAAATGAGACAAAC----A---T-G----G------ATTCATT
258 TGTAAAGCCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATT
* *
186106 TTGTGATTACGCACCAT-AACACATTATCCTCATTAGGATAAATGATATTGATGATTTTCTTTTC
323 TTGTGATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTC
* *
186170 CATGAAAATCTTTTCTTTGCCCTATTTTCCTTGAAATCAAAGTTCATCCCTTAAACAAGACAAGC
388 CATGGAAATCTTTTCTTTGCCCTATTTTCCTTGAAATCAAAGTTCATCCCTTAAATAAGACAAGC
*
186235 ATCGATTCTCATAAGAGTCTCCA
453 ATCGATTCTCATAACAGTCTCCA
* * * * *
186258 TTCTTTTCGAGATTGGGAACCAAAAACACCTTCACTTCATTAGGAGACATGACATTGATGCTTTA
1 TTCTTTTCAAGATTGGGAAGCTAAAACACATTCACTTCATTAGGAGACATGACATTGATGCTTTG
* * * * ** * *
186323 GTGTCGCAGGGAAAGCTTTTCATCCCACGGTTTTTGATACAATC-AAGCTTTGTCT-TATAAGA-
66 GTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAG-TTTATCTCT-TAA-AT
** * ** *
186385 AAGACAAACATGAATACTTGTACAAATCCTTATTC-TTTTCAGGATTAGGCACCACAAACATAGA
128 AAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTC-GGATTAGGCACCATAAACATAG-
* * *
186449 CTCTT-T-ATTAGGATCCAAGATATTGATGCTTTGGCTTT-GCAAGAAAGGCTTTTATCCCACCA
191 -TCTTCTCATTAGGATACACGATATTGATGCTTTGG-TTTCTCAAGAAAGGCTTTT-TCCCACCA
* * * * * * * *
186511 ATTTTTGTATAGTCTAAGTTTGTGCCTCAAATAAAACAAATAGGGATACTAGTAATGATCTTCAT
253 ATTTTTGTAAAGCCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAT
** *
186576 TCATTTTGTGATTAGGCACCATAAATGCATTCTCCTCATTAGGATAAATGATATTGACGA-TTT-
318 TCATTTTGTGATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTC
* * * *
186639 TTTTCCATTGAAATCTTTTCTTTGCCCAATTTTCCTTGAAATCAAAGTTAATCCCATAAATAAGA
383 TTTTCCATGGAAATCTTTTCTTTGCCCTATTTTCCTTGAAATCAAAGTTCATCCCTTAAATAAGA
* *
186704 TAAGCATCGATTCTCATAAAAGTCTCCA
448 CAAGCATCGATTCTCATAACAGTCTCCA
* * * * * *
186732 TTCTTTCCAAGATTGGGAACCAAAAACCCCTTCACTTCCTTAGGAGACATGACATTGATGCTTTG
1 TTCTTTTCAAGATTGGGAAGCTAAAACACATTCACTTCATTAGGAGACATGACATTGATGCTTTG
* * ** * * * *
186797 GTGTCGTAAGAAAAACTTTTCTTTCCACTGTTTTTTATAGAATCAAGGTTTGTCTCTTAAGTAAG
66 GTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAG
* * * * * *
186862 AGAAACATGAATAATCATACTAGTCCCCATTC-TTTTCAAGATTAGGCACCATTAACATGGTCTT
131 ACAAACATGAATACTCATACTAATCCCCATTCTTTTTC-GGATTAGGCACCATAAACATAGTCTT
* * *
186926 CACATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCGAGTTTT
195 CTCATTAGGATACACGATATTGATGCTTTGGTTTCTCAAGAAAGGC-TTTTTCCCACC-AATTTT
* * * * * * *
186991 T-CAAAGCCTATGTTTGTGCCTTAAATAAGACAAACATGGATTCTTA-TAATGATCTTCACTCTT
258 TGTAAAGCCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTC-TAGTAATGATCTTCATTCAT
* * * *
187054 TTTGTGATTACGCAACAT-AACACATTCTCCTTATTAAGATAAATGATATTGATGATTTT-TTTT
322 TTTGTGATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTT
* * *
187117 CCATGGAAATCATTTCTTTGCCCTATTTTCCTTGAAATCAAAGTTCATCCTTTAAATAAGATAAG
387 CCATGGAAATCTTTTCTTTGCCCTATTTTCCTTGAAATCAAAGTTCATCCCTTAAATAAGACAAG
*
187182 CATCGATTCTCATAATAGTCTCCA
452 CATCGATTCTCATAACAGTCTCCA
* * * * * * *
187206 TTCTTTTCGAGTTTGGGAAACAAAAACACCTTCACTTCATTAGGAGACATGACGTTGATGCTTTA
1 TTCTTTTCAAGATTGGGAAGCTAAAACACATTCACTTCATTAGGAGACATGACATTGATGCTTTG
* * ** * * *
187271 GTGTCGTAAGAAAAGCTTTTCTTCCCACGGTTTTTGATAGAATCAAGGTTTGTCTTTTAAGA-AA
66 GTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTATCTCTTAA-ATAA
* * * *
187335 GACAAACAAGAATACTCATACTAATCCACATAC-TTTTCGAGATTAGGCACCATAAACATAATCT
130 GACAAACATGAATACTCATACTAATCCCCATTCTTTTTCG-GATTAGGCACCATAAACATAGTCT
* * *
187399 TCTCATTAGGATCCATGATATTGAAGCTTTGGTTT-TGCAAGAAAGGCTTTTATCCCACCAATTT
194 TCTCATTAGGATACACGATATTGATGCTTTGGTTTCT-CAAGAAAGGCTTTT-TCCCACCAATTT
*
187463 TTGTAAAGCCTAAGTTCGTGTCTCAAATGAGACAAACATGGATTCTAGTAATGATC-TCAATTCA
257 TTGTAAAGCCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC-ATTCA
** *
187527 TTTTGTGATTAGGCACCATAAACACATTCTTTTCATTAGGAAAAATGATATTGATGATTTTCTTT
321 TTTTGTGATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTT
* * * * * *
187592 TGCATGGGAATCTTTTC--TGCCCTATTTTCCTTCG-AATCAAAGTTTATCCTTTCAATCAGACA
386 TCCATGGAAATCTTTTCTTTGCCCTATTTTCCTT-GAAATCAAAGTTCATCCCTTAAATAAGACA
* *
187654 GGCATCGATTCTCTTAACAGT-TGCCA
450 AGCATCGATTCTCATAACAGTCT-CCA
* ** * * * * *
187680 TTCTTTT-AAGGATTAGGAAGCTAAAACGTAATCCCTTCTTTAGGATACATGACCTTGATGCTTT
1 TTCTTTTCAA-GATTGGGAAGCTAAAACACATTCACTTCATTAGGAGACATGACATTGATGCTTT
* * * * * * *
187744 GGTGTTGCAAGAAAAGTTTTTCTTTCTACCGTTTTAGATAAAATCAAAGTTTATCTCCTAAATAA
65 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAA
* * * * * * *
187809 GACAAAC-T---T--GC--ACGAAT-CCCATTCTTTTCCAGATTAGGCACTATAAACAAAGTATT
130 GACAAACATGAATACTCATACTAATCCCCATTCTTTTTCGGATTAGGCACCATAAACATAGTCTT
* * *
187865 CTCATTAGGATACACGATATTAATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTG
195 CTCATTAGGATACACGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTT-TTCCCACCAATTTTT
* * * *
187930 GAAAAGTCTAAGTTCGTACCTTAAATGAGACAAACATGGATTCTAGTAATGAT-TATCATTCATT
259 GTAAAGCCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCT-TCATTCATT
* * * *
187994 TTGTGATTAGGCACCATAACCACATTCTCCTTATTAGGATAAACGATATTGATGATTTTTTTTTT
323 TTGTGATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA-TTTTCTTTT
* * * * * * * * * * * ***
188059 GCATGAAAATCCTTTATTTACCTTTTTTTCCTTAAAATCATAGTTCATCCCGTAAATAAAAGGGG
387 CCATGGAAATCTTTTCTTTGCCCTATTTTCCTTGAAATCAAAGTTCATCCCTTAAATAAGACAAG
188124 CAT-GAATTCTCATAACAGTCTCCA
452 CATCG-ATTCTCATAACAGTCTCCA
* * *
188148 TTCTTTTTAAGAGTGGGATGCTAAAACACATTC
1 TTCTTTTCAAGATTGGGAAGCTAAAACACATTC
188181 CCTACTGAAA
Statistics
Matches: 6357, Mismatches: 1008, Indels: 460
0.81 0.13 0.06
Matches are distributed among these distances:
455 56 0.01
456 28 0.00
457 203 0.03
458 82 0.01
459 3 0.00
460 4 0.00
461 15 0.00
462 59 0.01
463 164 0.03
464 502 0.08
465 203 0.03
466 34 0.01
467 3 0.00
468 78 0.01
469 8 0.00
470 44 0.01
471 66 0.01
472 223 0.04
473 523 0.08
474 1738 0.27
475 861 0.14
476 624 0.10
477 38 0.01
478 411 0.06
479 1 0.00
482 1 0.00
484 29 0.00
485 85 0.01
486 7 0.00
487 208 0.03
488 40 0.01
489 16 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (475 bp):
TTCTTTTCAAGATTGGGAAGCTAAAACACATTCACTTCATTAGGAGACATGACATTGATGCTTTG
GTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAG
ACAAACATGAATACTCATACTAATCCCCATTCTTTTTCGGATTAGGCACCATAAACATAGTCTTC
TCATTAGGATACACGATATTGATGCTTTGGTTTCTCAAGAAAGGCTTTTTCCCACCAATTTTTGT
AAAGCCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTG
TGATTAGGCACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCCAT
GGAAATCTTTTCTTTGCCCTATTTTCCTTGAAATCAAAGTTCATCCCTTAAATAAGACAAGCATC
GATTCTCATAACAGTCTCCA
Found at i:188235 original size:22 final size:22
Alignment explanation
Indices: 188207--188252 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
188197 GGAATAATGA
*
188207 ACCTACGTCCTCTCTCCTTGAC
1 ACCTACGTCCTCTCTCCTCGAC
188229 ACCTACGTCCTCTCTCCTCGAC
1 ACCTACGTCCTCTCTCCTCGAC
188251 AC
1 AC
188253 TTCCTTGTCG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.15, C:0.48, G:0.09, T:0.28
Consensus pattern (22 bp):
ACCTACGTCCTCTCTCCTCGAC
Found at i:188845 original size:19 final size:20
Alignment explanation
Indices: 188800--188851 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
188790 TTACAAGCCA
*
188800 ATGTATCGATACATTTTGGG
1 ATGTATCGATACATCTTGGG
*
188820 ATGTATCGATACATCTTGTG
1 ATGTATCGATACATCTTGGG
188840 -TGTATCGATACA
1 ATGTATCGATACA
188852 AACAGTTAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 12 0.40
20 18 0.60
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.38
Consensus pattern (20 bp):
ATGTATCGATACATCTTGGG
Found at i:197599 original size:20 final size:20
Alignment explanation
Indices: 197574--197625 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
197564 TTACAAGCCA
**
197574 ATGTATCGATACATTTTGGG
1 ATGTATCGATACATCCTGGG
* *
197594 ATGTATCCATACATCCTGTG
1 ATGTATCGATACATCCTGGG
197614 -TGTATCGATACA
1 ATGTATCGATACA
197626 AACAGTTAAG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 11 0.41
20 16 0.59
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACATCCTGGG
Found at i:199058 original size:431 final size:430
Alignment explanation
Indices: 198256--199118 Score: 1143
Period size: 431 Copynumber: 2.0 Consensus size: 430
198246 CACCAATTTT
* *
198256 TTGTAAAGCCTAACTTCGTGCCTCAAATGAGACAAATATGGATTCTAGGAATGATCTTCATTCAT
1 TTGTAAAGCCAAACTTCGTGCCTCAAATGAGACAAATATGGATTCTAGAAATGATCTTCATTCAT
198321 TGTTTGATTAGGCACCATAAACACATTCCCTTCATTAGGAAAAATGATATTGATGATTTTCTTTT
66 TGTTTGATTAGGCACCATAAACACATTCCCTTCATTAGGAAAAATGATATTGATGATTTTCTTTT
* * * **
198386 GCGTAAAAATCTTTTCTGCCCTATTTTCCTTCAAACCAAAGTTCATCCCTTAAGTAAGACAAGGA
131 CCATAAAAATCTTTTCTGCCCTATTTTCCTTAAAACCAAAGTTCATCCCTTAAACAAGACAAGGA
* *
198451 TTGATTCTTATAACAGTCTCCATTCTTTTGAAGATTGGGAAGCTAAAACGCGTTCCCTTAATTAG
196 TCGATTCTTATAACAGTCTCCATTCTTTTGAAGATTGGGAAGCTAAAACGCATTCCCTTAATTAG
* * * * * * *
198516 GATGCATGACCTTGATGCTTTGGTGTCGCATGAAAAGCTTTTGTTTCTACTATTTTTTACAGAAT
261 GATACATGACATTGATGATTTGGTGTCGCATGAAAAGCTTTTCTTTCCACCAATTTTTACAGAAT
* * * *
198581 CGAAGTTTATCTCTTAAATAAGATAAACACAAATACTCATACTAATCCCCATTCCTTTTAGGATT
326 CAAAGTTCATCTCTTAAATAAGACAAACACAAATACTCATACTAATCCCCATTCCTTTTAGAATT
*
198646 AGGAACCATTAACATAGTCTTCACATTAGGATACACGATA
391 AGGAACCATAAACATAGTCTTCACATTAGGATACACGATA
* * *
198686 TTGTAAAGCCAAAGTTTGTGCCTTAAATGAGACAAACT-TGGATTCTTA-AAATGAT-TATCATT
1 TTGTAAAGCCAAACTTCGTGCCTCAAATGAGACAAA-TATGGATTC-TAGAAATGATCT-TCATT
* *
198748 CATT-TTGTGATTATGCACCAT-AAGACATTCTCC-TCATTA-GAATAAATGATATTGATGATTT
63 CATTGTT-TGATTAGGCACCATAAACACATTC-CCTTCATTAGGAA-AAATGATATTGATGATTT
** * *
198809 TCTTTTCCATTGAAATCTTTTCTTTTCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAACAA
125 TCTTTTCCATAAAAATCTTTTC--TGCCCTATTTTCCTTAAAACCAAAGTTCATCCCTTAAACAA
* * *
198874 GATAAGGATCGATTC-TAGTAACTA-TCTCCATTCTTTTCG-AGATTTGGAAGCTAAAATGCATT
188 GACAAGGATCGATTCTTA-TAAC-AGTCTCCATTCTTTT-GAAGATTGGGAAGCTAAAACGCATT
* * *
198936 CCCTTCATTAGGATACCTGACATTGATGATTTGGTGTCGCATGAATAGCTTTTCTTTCCACCAAT
250 CCCTTAATTAGGATACATGACATTGATGATTTGGTGTCGCATGAAAAGCTTTTCTTTCCACCAAT
** *
199001 TTTTATGGAATCAAAGTTCATCTCTTAAATAAGACAAACACAAATACTCATACTAATCCCTATTC
315 TTTTACAGAATCAAAGTTCATCTCTTAAATAAGACAAACACAAATACTCATACTAATCCCCATTC
* * * * * * *
199066 TTTTTTGAATTAGGGATCGTAAACATAGTTTTCTCATTAGGATACACGATA
380 CTTTTAGAATTAGGAACCATAAACATAGTCTTCACATTAGGATACACGATA
199117 TT
1 TT
199119 AATGCTTTGG
Statistics
Matches: 376, Mismatches: 46, Indels: 21
0.85 0.10 0.05
Matches are distributed among these distances:
428 3 0.01
429 53 0.14
430 71 0.19
431 247 0.66
432 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (430 bp):
TTGTAAAGCCAAACTTCGTGCCTCAAATGAGACAAATATGGATTCTAGAAATGATCTTCATTCAT
TGTTTGATTAGGCACCATAAACACATTCCCTTCATTAGGAAAAATGATATTGATGATTTTCTTTT
CCATAAAAATCTTTTCTGCCCTATTTTCCTTAAAACCAAAGTTCATCCCTTAAACAAGACAAGGA
TCGATTCTTATAACAGTCTCCATTCTTTTGAAGATTGGGAAGCTAAAACGCATTCCCTTAATTAG
GATACATGACATTGATGATTTGGTGTCGCATGAAAAGCTTTTCTTTCCACCAATTTTTACAGAAT
CAAAGTTCATCTCTTAAATAAGACAAACACAAATACTCATACTAATCCCCATTCCTTTTAGAATT
AGGAACCATAAACATAGTCTTCACATTAGGATACACGATA
Found at i:200100 original size:13 final size:13
Alignment explanation
Indices: 200082--200107 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
200072 CAATTTTTTG
200082 TGTATCGATACAT
1 TGTATCGATACAT
200095 TGTATCGATACAT
1 TGTATCGATACAT
200108 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:201371 original size:476 final size:476
Alignment explanation
Indices: 200467--204187 Score: 4387
Period size: 474 Copynumber: 7.9 Consensus size: 476
200457 AAGATCCTAA
* * *
200467 CAAAGTTCATCCCTTAAATAAGACAAGTATCGATTCTCGTAACAGTCTCCATTCTTTTAAAGATT
1 CAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTTGTAACAGTCTCCATTCTTTTGAAGATT
* ** * *
200532 GGGAAGCTAAAACGCAATCATTTCTTTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAA
66 GGGAAGCTAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAA
** * * * * * * * *** *
200597 GCTTTTCTTTCTGCCGTCTTTGATAAAATTAAAGTTTATCTCCTAAATAAGACACACTTGAATGC
131 GCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACACAAATAC
* * * * ** * * * * *
200662 TCATACTAAT-CCCAATATTTTTCGAATTTTGCACCGTAAACATAGTCTCCTCATCAGGATACAC
196 TCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATTAACATAGTCTTCACATTAGGATACAC
* ** * * * *
200726 GATATTGATGCTTCGGTTTCAAAAGAAAGGCTTTTTTCCCACCAA-TTTTGGAAAAGTCTAAGTT
261 GATATTGATGCTTTGGTTTCGCAAGAAAGTCATTTTTCCCACCAATTTTTGTAAAA-CCTAAGTT
* * * ** *
200790 TGTGCCTGAAATGAGACAACCATGGATTCTAGTAATGATCTTCATTCATTTTGAAATTAGGCACT
325 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCCCT
* *
200855 ATAAACACATTCTCCTTATTAGGATAAATTATATTGATGATTTTCTTTTCCATGAAAATCTTTTA
390 ATAAACACATTCTCCTCATTAGGATAAATTATATTGATGATTTTCTTTTCCATGAAAATCTTTTC
200920 TTTGCCCTATTTTCCTTAAAAT
455 TTTGCCCTATTTTCCTTAAAAT
* * * *
200942 CAAAGTCCATCCCTTAAATAAGACAAGGATCAATTCTTGCAACAGTCTCCACTCTTTTGAAGATT
1 CAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTTGTAACAGTCTCCATTCTTTTGAAGATT
* * *
201007 GGGAAGCTAAAACGCATTCCTTTCATTAGGATACATGACATTTATGCTTTGGTGTTGCAAGAAAA
66 GGGAAGCTAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAA
*
201072 GCTTTTCTTTCCACCATTTTTTAT-GTAATCAAAGTTTATCTCTTAAATAAGACAATCACAAATA
131 GCTTTTCTTTCCACCATTTTTTATAG-AATCAAAGTTTATCTCTTAAATAAGACAAACACAAATA
* * *
201136 GTCATACCAATCCCCATTCTTTTTAGCATTAGGCACCATTAACATAGTCTTCACATTAGGATACA
195 CTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATTAACATAGTCTTCACATTAGGATACA
*
201201 CGATATTGATGAC-TTGGTTTCGCAAGAAAATCATTTTTCCCACCAATTTTTGTAAAACCTAAGT
260 CGATATTGATG-CTTTGGTTTCGCAAGAAAGTCATTTTTCCCACCAATTTTTGTAAAACCTAAGT
* * * **
201265 TCGTGCCTCAATTGAGACAAGCTTAAATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCCC
324 TCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCCC
* * * *
201330 TGTAAACACATTTTCCTCATTGGGATAAATTATATTGATGATTTTCTTTTCCATGAAAATATTTT
389 TATAAACACATTCTCCTCATTAGGATAAATTATATTGATGATTTTCTTTTCCATGAAAATCTTTT
* *
201395 CTTTGCTCTATTTTCTTTAAAAT
454 CTTTGCCCTATTTTCCTTAAAAT
* ** * * *
201418 CAAAGTCCATCCCTGGAATAAAACAGGGATCGATTCTTGTAACAATCTCCATTCTTTTGAAGATT
1 CAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTTGTAACAGTCTCCATTCTTTTGAAGATT
* * * * *
201483 GGAAAGCTAAAACGCATTCCTTTCATTAGGATACATGATATTGATGCTTTGGTGTCACGAGAAAA
66 GGGAAGCTAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAA
* * *
201548 TCTTTTC--T--ACCATTTTTTATAGAATGAAAATTTATCTCTCTTAAATAAGACAAACACAAAT
131 GCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTA--TCTCTTAAATAAGACAAACACAAAT
*
201609 ACTCATACTAATCCCCATTCCTTTTAGGATTAGGCACCATTAACATAGTCTTCACATTAGGATAC
194 ACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATTAACATAGTCTTCACATTAGGATAC
* * * * * **
201674 ACGATATTGATGCTTTGGCTTCGAAAGAAGGTCATTTTTCCAACCAATTTTTGTAGAGGCTAAGT
259 ACGATATTGATGCTTTGGTTTCGCAAGAAAGTCATTTTTCCCACCAATTTTTGTAAAACCTAAGT
* * * * * *
201739 TCGTGCCTCAAATGAGACAAACTTAGATTCTTGTAATGATCGTCATTTATTTTGTGATTAGGCCT
324 TCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCCC
* * *
201804 TATAAACATATTGTCCTCATTAGGATAAATTATATTGATGATTTTCTTTTCCAAGAAAATCTTTT
389 TATAAACACATTCTCCTCATTAGGATAAATTATATTGATGATTTTCTTTTCCATGAAAATC-TTT
* *
201869 TTTTTGCCCTCTTTTCCTTAAAAT
453 TCTTTGCCCTATTTTCCTTAAAAT
* * * *
201893 CAAAATTCATCCCTTAAACAAGACAAGGATTGATTCTTGTAATAGTCTCCATTCTTTTGAAGATT
1 CAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTTGTAACAGTCTCCATTCTTTTGAAGATT
* *
201958 GGGAAGCTAAAATGCAATCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAA
66 GGGAAGCTAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAA
* * **
202023 G-----C-TT--ACCACTTTTTATAGAATCAAAGTTTATCTTTTAAATAAGACAAACTTAAATAC
131 GCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACACAAATAC
* ** * * * *
202080 TCATACTAAT-CCCATTATTTTTTTGAGTT-CGCACC-TAAACATAGTCTTCTCATTAGGATGCA
196 TCATACTAATCCCCATTCTTTTTAGGA-TTAGGCACCATTAACATAGTCTTCACATTAGGATACA
* * * * * * **
202142 CGATATTGATGCTTTGATTTCACAGGAAAGGC-TTTCTTCTCACCAATTTTAG-AAAAGTATAAG
260 CGATATTGATGCTTTGGTTTCGCAAGAAAGTCATTT-TTCCCACCAATTTTTGTAAAA-CCTAAG
* * * * ** * *
202205 TTCTTGCCTCAAATGAGACAACCATGGATTCTAGTAATCATCTTCATTCACTTTGAAATTAAGCA
323 TTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCC
* * *
202270 CTATAAAACACATTCTCCTTATTAGGATAAATTATATTGATGATTTTCTTTTTCATGAAATTCTT
388 CTAT-AAACACATTCTCCTCATTAGGATAAATTATATTGATGATTTTCTTTTCCATGAAAATCTT
* * *
202335 TTCCTTACCTTATTTTCCTTAAAAT
452 TTCTTTGCCCTATTTTCCTTAAAAT
* * * * * * * *
202360 CAAAGTCCATCCTTTAAATAGGGCAAGCATCGATTCTCGTAACAGTCTCTATT-TTTTGGAGATT
1 CAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTTGTAACAGTCTCCATTCTTTTGAAGATT
* * * * * * * *
202424 GGGAACCAAAAACATC-TTCACTTCGTTAAGAGACATGGCATTGATGCTTTGGTGTCGCAAGAAA
66 GGGAAGCTAAAAC-GCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAA
* * * * * * *
202488 ATCTTTTCTTTCCACCGTTTTTGATAGAATCATAGTTTGTCTTTTAAATGAGACAAACA-AGAAT
130 AGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACACA-AAT
* *
202552 AGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATTAACATAGTCTTCACATTAGGATAT
194 ACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATTAACATAGTCTTCACATTAGGATAC
* *
202617 ACGATATTGATTCTTTGGTTTCGCAAGAAAGTCATTTTTCCCACCAATTTTTGTAAAGCCTAAGT
259 ACGATATTGATGCTTTGGTTTCGCAAGAAAGTCATTTTTCCCACCAATTTTTGTAAAACCTAAGT
* * * * *
202682 TCGTGCCTCAAAGGAGACAAACATGGATTCTTGTAATTATCTTCATTTATTTTGTGATTAGGCCT
324 TCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCCC
*
202747 TATAAACACATTCTCCTCATTAGGATAAATTACATTGATGA-TTT-TTTTCCATGAAAATCTTTT
389 TATAAACACATTCTCCTCATTAGGATAAATTATATTGATGATTTTCTTTTCCATGAAAATCTTTT
* *
202810 CTTTGCCTTATTTTCCCTAAAAT
454 CTTTGCCCTATTTTCCTTAAAAT
* * *
202833 CAAAATTCATCCCTTAAATAAGACAAGGATCGATTCCTT-TAACAGTCTCCATTCTTCTAAAGAT
1 CAAAGTTCATCCCTTAAATAAGACAAGGATCGATT-CTTGTAACAGTCTCCATTCTTTTGAAGAT
* * *
202897 TGGGAAGCTAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGAGTCGCAAGAAA
65 TGGGAAGCTAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAA
* * * * * * * *
202962 AGCTTATCTTCCCACAACTTTTTACAAAATCAAAGTTTTTCTCTCAAATAAGACAAACACAAATA
130 AGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACACAAATA
* * *
203027 CTGATGCTAATCCCCATTCTTTTTAGGATTAGGCACCATTAACATAGTTTTCACATTAGGATACA
195 CTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATTAACATAGTCTTCACATTAGGATACA
* * *
203092 CGATATTGATGCTTTGCTTTCACAAGAAAGTCATTTTTCCCACCAA-TTTTGAAAAAGCCTAAGT
260 CGATATTGATGCTTTGGTTTCGCAAGAAAGTCATTTTTCCCACCAATTTTTGTAAAA-CCTAAGT
* * ** * *
203156 TCGTGCCTCAAATGAGACAAACTTAGATTCTTCTAATAATCTTCATTCATTTTATGATTAGGCCC
324 TCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCCC
* ** * *
203221 TATAAACACATTCTCCCCATTAGGATAAAGCATATTGATGATTTTCTTTTCCATTAAAACCTTTT
389 TATAAACACATTCTCCTCATTAGGATAAATTATATTGATGATTTTCTTTTCCATGAAAATCTTTT
*
203286 CTTTGCCCTATTTTTCTTAAAAT
454 CTTTGCCCTATTTTCCTTAAAAT
* * * *
203309 CAAAATTCATCCCTCAAATAAGACAAGGATCAATTCTTGTAACAGTCTCCATTCTTTTAAAGATT
1 CAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTTGTAACAGTCTCCATTCTTTTGAAGATT
* * **
203374 TGGAAGCTAAAATGCATTCCCTTCATTAGGAT---TG--A-TGA---TTTGGTGTCATAAGAAAA
66 GGGAAGCTAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAA
*
203430 GCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGATAAACACAAATAC
131 GCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACACAAATAC
* * * * *
203495 TCATACTAAT-CCCATTAC-TTTCAGGATTAGGCCCCATAAACATAGTCTGCACATTAAGATACA
196 TCATACTAATCCCCATT-CTTTTTAGGATTAGGCACCATTAACATAGTCTTCACATTAGGATACA
* *
203558 CGATATTGATGCTTTGGTTTCGCAAGAAAGTCATTTTTCCAACCAATTTTTGTAAAGCC-AAGTT
260 CGATATTGATGCTTTGGTTTCGCAAGAAAGTCATTTTTCCCACCAATTTTTGTAAAACCTAAGTT
* *
203622 CGTGCCTCAAATGAGACAACCATGGATTCTTGTAATGATTTTCTTCATTCATTTTGTGATTAGG-
325 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA---TCTTCATTCATTTTGTGATTAGGC
* * * * * ** *
203686 CATCATAAACTCATTCTCCTCATTGGGCT-TATTGCATTGATGATTTT-TTTTCCATGTAAATCT
387 CCT-ATAAACACATTCTCCTCATTAGGATAAATTATATTGATGATTTTCTTTTCCATGAAAATCT
* *
203749 TTTCTTTGCCTTATTTTCCTAAAAAT
451 TTTCTTTGCCCTATTTTCCTTAAAAT
* * * ** * *
203775 CAAAGTTAATCCCTTAAATCAGACAAGCATCGATTCTCATAATAGTCTCCATTTTTTTTG-AGAT
1 CAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTTGTAACAGTCTCCA-TTCTTTTGAAGAT
* * * * * * * *
203839 TGGGAACCAAAAACACCTTCACTACATTAGGAGACATGACATTGATGCATTGGTGTCGCAAGAAA
65 TGGGAAGCTAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAA
* * **
203904 AGCTTTTCTTTCCATCATTTTTGATAGAATCAAAGTTCGTCTCTTAAATAAGACAAACA-AGAAT
130 AGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACACA-AAT
* * * * **
203968 AGTTATACTAATCCCTATT-TGTTTAGGATTAGGCACC-TTAAACATAGTCTTTTCATTAGGATA
194 ACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATT-AACATAGTCTTCACATTAGGATA
* * * * **
204031 CACGATAATGATGCTTTGGTTTTGCAAGAAAGGT--TTTCTTCCC-CCGATTTTTGCAAAGTCTA
258 CACGATATTGATGCTTTGGTTTCGCAAGAAA-GTCATTT-TTCCCACCAATTTTTGTAAAACCTA
*
204093 AGTTCGTGCCACAAATGAGACAAACATGGATT-TAAGTAATGATCTTCATTCAATTTTGTGATTA
321 AGTTCGTGCCTCAAATGAGACAAACATGGATTCT-AGTAATGATCTTCATTC-ATTTTGTGATTA
** *
204157 GGTGGC-ATAAACACATTCTCCTTATTAGGAT
384 GG-CCCTATAAACACATTCTCCTCATTAGGAT
204188 TGTCGCAACG
Statistics
Matches: 2762, Mismatches: 420, Indels: 130
0.83 0.13 0.04
Matches are distributed among these distances:
465 38 0.01
466 264 0.10
467 295 0.11
468 112 0.04
469 38 0.01
470 4 0.00
471 27 0.01
472 36 0.01
473 127 0.05
474 647 0.23
475 559 0.20
476 599 0.22
477 16 0.01
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (476 bp):
CAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTTGTAACAGTCTCCATTCTTTTGAAGATT
GGGAAGCTAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAA
GCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACACAAATAC
TCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATTAACATAGTCTTCACATTAGGATACAC
GATATTGATGCTTTGGTTTCGCAAGAAAGTCATTTTTCCCACCAATTTTTGTAAAACCTAAGTTC
GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCCCTA
TAAACACATTCTCCTCATTAGGATAAATTATATTGATGATTTTCTTTTCCATGAAAATCTTTTCT
TTGCCCTATTTTCCTTAAAAT
Found at i:205181 original size:219 final size:219
Alignment explanation
Indices: 204802--205239 Score: 849
Period size: 219 Copynumber: 2.0 Consensus size: 219
204792 TTTTGCTATT
204802 TTTAAAAAGTTTTAAAGCATGAATGCCAAAAGATCCCTACGAAAGGAAACACGGTAGTAAATCGA
1 TTTAAAAAGTTTTAAAGCATGAATGCCAAAAGATCCCTACGAAAGGAAACACGGTAGTAAATCGA
*
204867 AGAAAATAACAGACAAATTTATACAAAATAAATGCATAAAAAAAACCATAAAAAGAAAGGACGAT
66 AGAAAATAACAAACAAATTTATACAAAATAAATGCATAAAAAAAACCATAAAAAGAAAGGACGAT
204932 CAAAGTATGTCTCATGATTGTTTTCGATTAATGATGTATAATCGTGATAACAATGTTGAGACTTG
131 CAAAGTATGTCTCATGATTGTTTTCGATTAATGATGTATAATCGTGATAACAATGTTGAGACTTG
204997 ATTGGATTCTGTGAGGTTTTCGAA
196 ATTGGATTCTGTGAGGTTTTCGAA
* *
205021 TTTAAAAAGTTTTAAAGCATGAATGCCGAAAGATCCCTACGAAAGGAAACACGTTAGTAAATCGA
1 TTTAAAAAGTTTTAAAGCATGAATGCCAAAAGATCCCTACGAAAGGAAACACGGTAGTAAATCGA
205086 AGAAAATAACAAACAAATTTATACAAAATAAATGCATAAAAAAAACCATAAAAAGAAAGGACGAT
66 AGAAAATAACAAACAAATTTATACAAAATAAATGCATAAAAAAAACCATAAAAAGAAAGGACGAT
205151 CAAAGTATGTCTCATGATTGTTTTCGATTAATGATGTATAATCGTGATAACAATGTTGAGACTTG
131 CAAAGTATGTCTCATGATTGTTTTCGATTAATGATGTATAATCGTGATAACAATGTTGAGACTTG
205216 ATTGGATTCTGTGAGGTTTTCGAA
196 ATTGGATTCTGTGAGGTTTTCGAA
205240 AAATGGTCTA
Statistics
Matches: 216, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
219 216 1.00
ACGTcount: A:0.43, C:0.12, G:0.18, T:0.27
Consensus pattern (219 bp):
TTTAAAAAGTTTTAAAGCATGAATGCCAAAAGATCCCTACGAAAGGAAACACGGTAGTAAATCGA
AGAAAATAACAAACAAATTTATACAAAATAAATGCATAAAAAAAACCATAAAAAGAAAGGACGAT
CAAAGTATGTCTCATGATTGTTTTCGATTAATGATGTATAATCGTGATAACAATGTTGAGACTTG
ATTGGATTCTGTGAGGTTTTCGAA
Found at i:205658 original size:53 final size:51
Alignment explanation
Indices: 205595--205770 Score: 221
Period size: 52 Copynumber: 3.4 Consensus size: 51
205585 GAAATAACGA
* *
205595 GGTTGGAGTATCCTCGATTGTGAAAAAATTGGTGTTTTTGGAAATAAAATCG
1 GGTTGGAGTATCCCCGATTGTGAAAAAATTGGTG-TTTTAGAAATAAAATCG
* * *
205647 GAGCTGGAGTATCCCCGA-T-TAAAGGAAAATTGGTGTTTTAAAAATAAAATCAG
1 G-GTTGGAGTATCCCCGATTGTGAA--AAAATTGGTGTTTTAGAAATAAAATC-G
* *
205700 GGTTGGAGTATCCCCGATTGTGAAAAAATTAGTGTTTTAGCAATAAAATCGG
1 GGTTGGAGTATCCCCGATTGTGAAAAAATTGGTGTTTTAGAAATAAAATC-G
205752 GGTTGGAGTATCCCCGATT
1 GGTTGGAGTATCCCCGATT
205771 ATGAGAAATC
Statistics
Matches: 107, Mismatches: 11, Indels: 12
0.82 0.08 0.09
Matches are distributed among these distances:
51 3 0.03
52 74 0.69
53 27 0.25
54 3 0.03
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.31
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTGTGAAAAAATTGGTGTTTTAGAAATAAAATCG
Found at i:205922 original size:54 final size:51
Alignment explanation
Indices: 205859--205991 Score: 151
Period size: 51 Copynumber: 2.5 Consensus size: 51
205849 GATTAACGGG
* * *
205859 GTTGGAGTATCCCCGATTGT-GAAAAATTGGTGTTTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTATAG-AAAATTAGTG---TTTTGAAAATAAAATCGGA
*
205913 GTTGGAGTATCTCCGATTATAGAAAATTAGTGTTTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTATAGAAAATTAGTGTTTTGAAAATAAAATCGGA
* * * *
205964 GATGGAATATCCCCGATTACAGAGAATT
1 GTTGGAGTATCCCCGATTATAGAAAATT
205992 GAGAAACTCA
Statistics
Matches: 69, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
51 41 0.59
54 27 0.39
55 1 0.01
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.32
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTATAGAAAATTAGTGTTTTGAAAATAAAATCGGA
Found at i:207810 original size:10 final size:10
Alignment explanation
Indices: 207781--207811 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
207771 AATGGAATAG
*
207781 TGTTTTTTTG
1 TGTTTTTTTT
207791 TGTTTTTTTT
1 TGTTTTTTTT
207801 TGTTTTTTTT
1 TGTTTTTTTT
207811 T
1 T
207812 TTTGCTAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (10 bp):
TGTTTTTTTT
Found at i:207813 original size:12 final size:12
Alignment explanation
Indices: 207783--207812 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
207773 TGGAATAGTG
207783 TTTTTTTGTGTT
1 TTTTTTTGTGTT
207795 TTTTTTTGT-TT
1 TTTTTTTGTGTT
207806 TTTTTTT
1 TTTTTTT
207813 TTGCTAAAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 9 0.50
12 9 0.50
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (12 bp):
TTTTTTTGTGTT
Found at i:208438 original size:13 final size:13
Alignment explanation
Indices: 208420--208444 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
208410 ACAATACTTA
208420 TGTATCGATACAT
1 TGTATCGATACAT
208433 TGTATCGATACA
1 TGTATCGATACA
208445 AATTGTTGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:208508 original size:21 final size:21
Alignment explanation
Indices: 208482--208558 Score: 111
Period size: 21 Copynumber: 3.7 Consensus size: 21
208472 GTTGGGACCC
* *
208482 TGTATCGATACATTTGTA-GAA
1 TGTATCGATACA-TTCTACAAA
*
208503 TGTATCGATACATTCCACAAA
1 TGTATCGATACATTCTACAAA
208524 TGTATCGATACATTCTACAAA
1 TGTATCGATACATTCTACAAA
208545 TGTATCGATACATT
1 TGTATCGATACATT
208559 TGGATGATTT
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
20 3 0.06
21 48 0.94
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (21 bp):
TGTATCGATACATTCTACAAA
Found at i:209310 original size:119 final size:116
Alignment explanation
Indices: 209111--209322 Score: 270
Period size: 119 Copynumber: 1.8 Consensus size: 116
209101 GGGTGTCCAC
* * * *
209111 TTTTCAAGGACAAAGGAAAAGAGAATGAAATAGGTCTTGCTCCATGAGGACCAAGGAAGAGAAGA
1 TTTTCAAGGACAAAGGAAAAGAGAATGAAATACGTCCTGCTCCATGAGGACAAAAGAAGAGAAGA
209176 AAAGGAAAGTGTCCTGCT-TCTTGAGGACAAAGTGAAAAAGAGTACGTCCCA
66 AAAGGAAAGTGTCCTGCTCT-TTGAGGACAAAGTGAAAAAGAGTACGTCCCA
*
209227 TTTTCCAAGGACAAAGGAAAAAGGGAAATGAAATACGTCCTGCTCTC-TGAGGACAAAAGAA-AG
1 TTTT-CAAGGACAAAGG-AAAAGAG-AATGAAATACGTCCTGCTC-CATGAGGACAAAAGAAGAG
* *
209290 AGGAAAA-TAAAGTGTATCCTGCTCTTTGAGGAC
62 AAGAAAAGGAAAGTG--TCCTGCTCTTTGAGGAC
209323 TAAAAAGTGC
Statistics
Matches: 82, Mismatches: 7, Indels: 11
0.82 0.07 0.11
Matches are distributed among these distances:
116 4 0.05
117 18 0.22
118 14 0.17
119 44 0.54
120 2 0.02
ACGTcount: A:0.40, C:0.15, G:0.25, T:0.19
Consensus pattern (116 bp):
TTTTCAAGGACAAAGGAAAAGAGAATGAAATACGTCCTGCTCCATGAGGACAAAAGAAGAGAAGA
AAAGGAAAGTGTCCTGCTCTTTGAGGACAAAGTGAAAAAGAGTACGTCCCA
Found at i:209440 original size:26 final size:26
Alignment explanation
Indices: 209351--209440 Score: 74
Period size: 26 Copynumber: 3.3 Consensus size: 26
209341 GTGTGGGCTT
*
209351 TGAAAGGCGTCCTGCTCTTTGAGGAC
1 TGAAAGGTGTCCTGCTCTTTGAGGAC
** * * *
209377 TGAAAGGTG-CCACCAACTTGTGTGGGC
1 TGAAAGGTGTCCTGC-TCTT-TGAGGAC
*
209404 TTCAAGAGGTGTCCTGCTCTTTGAGGAC
1 -TGAA-AGGTGTCCTGCTCTTTGAGGAC
209432 TGAAAGGTG
1 TGAAAGGTG
209441 CCACCAACTT
Statistics
Matches: 46, Mismatches: 13, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
25 3 0.07
26 16 0.35
27 8 0.17
28 8 0.17
29 8 0.17
30 3 0.07
ACGTcount: A:0.21, C:0.20, G:0.32, T:0.27
Consensus pattern (26 bp):
TGAAAGGTGTCCTGCTCTTTGAGGAC
Found at i:209502 original size:115 final size:115
Alignment explanation
Indices: 209306--209728 Score: 533
Period size: 115 Copynumber: 3.7 Consensus size: 115
209296 ATAAAGTGTA
* * *
209306 TCCTGCTCTTTGAGGACTAAAAAGTGCCA-CAACTCGTGTGGGCTTT----G-AAAGGCGTCCTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTG
* * *
209365 CTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTCAAGAGGTG
66 CTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTAAAGAGGCG
*
209415 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGCGTCCTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTG
* *
209480 CTCTTTGAGGACTGGGTAGTGCCACCAACTTGTGTGGGCTTTAAA-AGGCA
66 CTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGC-TTAAAGAGGCG
* * ** *
209530 TACTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGATTTTAAAAGGAGAAGGCGTCC
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCGTCC
209594 TGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAGGCG
64 TGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGC-TT--AA--AG-AGGCG
* *
209652 TCCTGCTCTTTGAGGACTG-AAGGTGCCACTAACTTGTGTGGGCTTTAAAAGAAAAGGTGTCCTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTG
*
209716 CTCTTTGGGGACT
66 CTCTTTGAGGACT
209729 AAAAAGCGGA
Statistics
Matches: 273, Mismatches: 24, Indels: 23
0.85 0.08 0.07
Matches are distributed among these distances:
109 27 0.10
110 16 0.06
114 1 0.00
115 91 0.33
116 62 0.23
118 2 0.01
120 27 0.10
121 26 0.10
122 21 0.08
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.27
Consensus pattern (115 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTG
CTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTAAAGAGGCG
Found at i:209619 original size:61 final size:60
Alignment explanation
Indices: 209306--209728 Score: 481
Period size: 55 Copynumber: 7.3 Consensus size: 60
209296 ATAAAGTGTA
** * *
209306 TCCTGCTCTTTGAGGACTAAAAAGTGCCA-CAACTCGTGTGGGCTTT----GA-AAGGCG
1 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCG
* * *
209360 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGC-TT--CA-AG-AGGTG
1 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCG
* * *
209415 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGCG
1 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCG
* *
209475 TCCTGCTCTTTGAGGACTGGGTA-GTGCCACCAACTTGTGTGGGCTTT---A-A-AAGGCA
1 TCCTGCTCTTTGAGGACT-GGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCG
* **
209530 TACTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGATTTTAAAAGGAGAAGGCG
1 TCCTGCTCTTTGAGGACT-GGAAGGTGCCACCAACTTGTGTGGGCTTTAAAA-GAGAAGGCG
*
209591 TCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAGGCG
1 TCCTGCTCTTTGAGGACT-GGAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAGAAGGCG
* * *
209652 TCCTGCTCTTTGAGGACT-GAAGGTGCCACTAACTTGTGTGGGCTTTAAAAGAAAAGGTG
1 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCG
*
209711 TCCTGCTCTTTGGGGACT
1 TCCTGCTCTTTGAGGACT
209729 AAAAAGCGGA
Statistics
Matches: 323, Mismatches: 28, Indels: 31
0.85 0.07 0.08
Matches are distributed among these distances:
54 29 0.09
55 108 0.33
56 3 0.01
57 1 0.00
58 2 0.01
59 31 0.10
60 69 0.21
61 77 0.24
62 3 0.01
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.27
Consensus pattern (60 bp):
TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCG
Found at i:210735 original size:12 final size:12
Alignment explanation
Indices: 210718--210757 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
210708 TCTCTTTTTC
210718 TTTGTTTTGTTT
1 TTTGTTTTGTTT
210730 TTTGTTTTGTTT
1 TTTGTTTTGTTT
*
210742 TGTT-TTTTTTTT
1 T-TTGTTTTGTTT
210754 TTTG
1 TTTG
210758 AAGAGAAGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
11 2 0.08
12 21 0.84
13 2 0.08
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (12 bp):
TTTGTTTTGTTT
Found at i:210754 original size:17 final size:17
Alignment explanation
Indices: 210712--210754 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
210702 CTTTTCTCTC
*
210712 TTTTTCTTTGTTTTGTT
1 TTTTTTTTTGTTTTGTT
*
210729 TTTTGTTTTGTTTTGTT
1 TTTTTTTTTGTTTTGTT
210746 TTTTTTTTT
1 TTTTTTTTT
210755 TTGAAGAGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.00, C:0.02, G:0.12, T:0.86
Consensus pattern (17 bp):
TTTTTTTTTGTTTTGTT
Found at i:223300 original size:80 final size:79
Alignment explanation
Indices: 223148--223352 Score: 205
Period size: 80 Copynumber: 2.6 Consensus size: 79
223138 GAGATAATAA
* * * * * * * ** * *
223148 CGGGGTTGGAGTGTCCCCTTGAAAATGATGGGGCTAGAGTATCCCCGGTTGTGAGAAATCGATGA
1 CGGGATTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATGA
*
223213 TTAGGGAAAAAAAAT
66 TTAGGG-AAAAAAAC
*
223228 TGGGATTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAAT-A
1 CGGGATTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATGA
* * *
223292 TTTTGGGAATAAAGC
66 -TTAGGGAAAAAAAC
* * **
223307 CGGGGTTGGAGTATCCCCTCGGAGGTAACGGGGTTGGAGTATCCCC
1 CGGGATTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCC
223353 GATGAAATAA
Statistics
Matches: 103, Mismatches: 21, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
79 47 0.46
80 56 0.54
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.24
Consensus pattern (79 bp):
CGGGATTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATGA
TTAGGGAAAAAAAC
Found at i:223363 original size:28 final size:28
Alignment explanation
Indices: 223307--223383 Score: 91
Period size: 28 Copynumber: 2.8 Consensus size: 28
223297 GGAATAAAGC
*** **
223307 CGGGGTTGGAGTATCCCCTCGGAGGTAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
223335 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
* *
223363 CGAGGTTGGAGTATCCTCGAT
1 CGGGGTTGGAGTATCCCCGAT
223384 TGTGAAAAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.22, C:0.19, G:0.35, T:0.23
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:223437 original size:53 final size:52
Alignment explanation
Indices: 223367--223541 Score: 223
Period size: 52 Copynumber: 3.3 Consensus size: 52
223357 AAATAACGAG
*
223367 GTTGGAGTATCCTCGATTGTGAAAAAATTGGTGTTTTTAGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAAAAAATTGGTG-TTTTAGAAATAAAATCGGA
* * *
223420 GCTGGAGTATCCCCGA-T-TAAAGGAAAATTGGTGTTTTAAAAATAAAATC-GA
1 GTTGGAGTATCCCCGATTGTGAA--AAAATTGGTGTTTTAGAAATAAAATCGGA
* *
223471 GGTTGGAGTATCCCCGATTGTGAAAAAATTAGTGTTTTAGCAATAAAATCAGG-
1 -GTTGGAGTATCCCCGATTGTGAAAAAATTGGTGTTTTAGAAATAAAATC-GGA
223524 GTTGGAGTATCCCCGATT
1 GTTGGAGTATCCCCGATT
223542 ATGAGAAATC
Statistics
Matches: 106, Mismatches: 9, Indels: 15
0.82 0.07 0.12
Matches are distributed among these distances:
51 5 0.05
52 72 0.68
53 25 0.24
54 4 0.04
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.31
Consensus pattern (52 bp):
GTTGGAGTATCCCCGATTGTGAAAAAATTGGTGTTTTAGAAATAAAATCGGA
Found at i:223610 original size:28 final size:26
Alignment explanation
Indices: 223594--223645 Score: 86
Period size: 27 Copynumber: 2.0 Consensus size: 26
223584 TCCTCTCAGA
223594 AATAACGGGGTTGGAGTATCCCCGATG
1 AATAACGGGGTTGGAGTATCCCCGA-G
*
223621 ATTAACGGGGTTGGAGTATCCCCGA
1 AATAACGGGGTTGGAGTATCCCCGA
223646 TTGTGAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.33, T:0.23
Consensus pattern (26 bp):
AATAACGGGGTTGGAGTATCCCCGAG
Found at i:223760 original size:51 final size:52
Alignment explanation
Indices: 223632--223762 Score: 156
Period size: 51 Copynumber: 2.5 Consensus size: 52
223622 TTAACGGGGT
* * * *
223632 TGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTTTGGAAATAAAATCGGAGT
1 TGGAGTATCCCCGATTGTGGAAAATTAGTG--TTTTTGAAAATAAAATCGGAGA
* * *
223686 TGGAGTATCTCCGATTATAGAAAATTAGTG-TTTTGAAAATAAAATCGGAGA
1 TGGAGTATCCCCGATTGTGGAAAATTAGTGTTTTTGAAAATAAAATCGGAGA
* *
223737 TGGAATATCCCCGATTGCGGAAAATT
1 TGGAGTATCCCCGATTGTGGAAAATT
223763 GAGAAACTCA
Statistics
Matches: 65, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
51 40 0.62
54 25 0.38
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.32
Consensus pattern (52 bp):
TGGAGTATCCCCGATTGTGGAAAATTAGTGTTTTTGAAAATAAAATCGGAGA
Found at i:226851 original size:474 final size:476
Alignment explanation
Indices: 225756--231637 Score: 6264
Period size: 474 Copynumber: 12.4 Consensus size: 476
225746 GGTGTCTACA
* * *
225756 AGGATAAATGATATTGCTGATTTT-TTTTCCATGGAAATCTTTTCTTTGCCCTATTTTTCTAAAA
1 AGGATAAATGATATTGATGATTTTCTTTTCCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAA
* * * *
225820 ATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCTTTTCGAGA
66 ATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGA
* * * * * * *
225885 TTGGGAACCAAAAACACCTTCACTTCATTAGGAAAC-TGACATTAATGCTTTGGTGTCGCAAGAA
131 TTGGGAAGCTAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAA
* * * * * * **
225949 AAGCTCTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTTTCCTAAATAAGACAAACAACAAT
196 AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAAT
* * * * * * *
226014 AGTCATACTAATCCCTATTCATTTCAGGATTAGGCACCTTAAATATAGT-TTTCTCATTAGGATA
261 ACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCCTCATTAGGATA
* * * * *
226078 CATGATAATGATGCTTTGG-ATTCGCAAGAAAGGCTTCCTTCTCC-CCAATTTTTGCAAAGTCTA
326 CACGATATTGATGCTTTGGTTTTCGCAAGAAAGG-TT--TTTTCCACCAATTTTTGTAAAGTCTA
* * * *
226141 AGTTCCTGGCTCAAATGAGACAAACTTGGATTCAAGTAATGATCTTCATTCAATTTT-TGGATTA
388 AGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTC-ATTTTGT-GATTA
* *
226205 GGCACCATAAACACATTCTCCTCATT
451 GGCACTATAAACACATTCTCCTCTTT
* * * * *
226231 AGGATAAATGATATTGATGATTTTCTTTTGCATGTAAATTTTTTCTTCGCCCCATTTTCCTTAAA
1 AGGATAAATGATATTGATGATTTTCTTTTCCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAA
* * * *** * *
226296 ATCAAAGTTCATCCCTTAAATATGAAAAGTATCGATTCTCACAACATTTTCCATTCTTTTCAAGA
66 ATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGA
* * * * * * *
226361 TTGGGATG-TCAAAACACATTCCCTTCAATAGGATACATGATATTGACGCTTTGGTGTTGTAAGA
131 TTGGGAAGCT-AAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
** * * * * *
226425 AAAGCTTTTCTTTCCACTGTTTTTGATAGAATAAAAGTTTGTCTCTTAAACAAGACAAATATGAA
195 AAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAA
* * * * * ** ** * *
226490 CAGTCACACTATTCCCCATTCATTGAAGGATTAGGTGCCATAAACGTAGTCTTCCT-ATTATGAT
260 TACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCCTCATTAGGAT
* * * * *
226554 ACACAATATTGATGCTTTGGTTTTAG-AAAAAATGTTTCCTTTCCGCCAATTTTTGTAAAGTC-A
325 ACACGATATTGATGCTTTGGTTTTCGCAAGAAAGGTTT--TTTCCACCAATTTTTGTAAAGTCTA
* * * * *
226617 AGTTCGTGCCTTAAATAAAACAAACATAGATTCTAGCAATGATCTTCATTCATTTTGTGATTAGG
388 AGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG
*
226682 CA-TATAAACACATTTTCCTCTTT
453 CACTATAAACACATTCTCCTCTTT
* * * * *
226705 AGGATAAATTATATTGATGATTTTCTTTTGCATCGAAATCCTTTCTTTAG-CTTATTTTCCTTAA
1 AGGATAAATGATATTGATGATTTTCTTTTCCATGGAAATCTTTTCTTT-GCCCTATTTTCCTTAA
* * ** * ** * * *
226769 AATCAAAGTTCATCTCTTAAATAAGACTACCATCGTTTCTCATAATAGTCTCTAGTCTTTTCAAG
65 AATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTTGTAACAGTCTCCATTCTTTTCAAG
* * * * * *
226834 ATTGGGAA-CGAAAAACACATTCCCTTCAGTAGGATACTTGGCATTAATGCTTTGCG-GTCGCAA
130 ATTGGGAAGC-TAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTG-GTGTCGCAA
* * * *
226897 GAAAAGCTTTT-TCTTCCACCGA-TTTTGATAGAATCGAAGTTTGTCTCTTAAATAAGATAAACA
193 GAAAAGCTTTTCT-TTCCACC-ATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACA
* * * * *
226960 TGAATA-T--TA-T--TCCCCATTCTTTTCAAGATTAGGCAGCATAAACATAGT-TTTCTCATAA
256 TGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCCTCATTA
* * * * * *
227018 AGATACACGATATTGATGCATTGG-TTTCGAAAGAAAGGTTTTCTTCC-CCTTACTTATGTAAAG
321 GGATACACGATATTGATGCTTTGGTTTTCGCAAGAAAGGTTTT-TTCCACC-AATTTTTGTAAAG
* * * * * *
227081 TCTAAGTTCATGCCTCAAAAGAGCCAAATATGGATTCTAGTAATGATCTTCCTTCATTTTGTAAT
384 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
*
227146 TGGGCACTATAAACACATTCTCCT-TATT
449 TAGGCACTATAAACACATTCTCCTCT-TT
* * * *
227174 AGGATGAATGATACTAATGATTTTCTTTATCC-TGGAAAT-TATTTCTTTTCCCTATTTTCCTTA
1 AGGATAAATGATATTGATGATTTTCTTT-TCCATGGAAATCT-TTTCTTTGCCCTATTTTCCTTA
* * * ** * * **
227237 AAATCAAAGTTCCTCCCTTAAATATGACAAGCATCGATTCTCATAACACTGTCCAAGCTTTTCAA
64 AAATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTTGTAACAGTCTCCATTCTTTTC-A
** * * * *
227302 AGATTGCAAACCAAAAACACGTTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAA
128 AGATTGGGAAGCTAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAA
* * ** * *
227367 GAAAAGCTCTTCTTTCCAACGGTTTTGATAGAATCAAAG-TT-TGTCTTAAATAAGACAAACATG
193 GAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATG
* * * * *
227430 AATAGTCATACTAATCCCTA-TCTTTTCACGATTAGGCACCATAAACATAGTCTT-CTCATTTGG
258 AATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCCTCATTAGG
* * **
227493 ACACACGATATTGATGCTTTGG-TTTCGTAAGAAAAACTTTTTTCCCACCAATTTTTGTAAAGTC
323 ATACACGATATTGATGCTTTGGTTTTCGCAAG-AAAGGTTTTTT-CCACCAATTTTTGTAAAGTC
* * * *
227557 TAAGTTCGTGCCTCAAATGAGACAAACATAGATTCAAATAATTATCTTCATTCATTTTGTGATTA
386 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTA
* *
227622 GGCATTATAAATACATTCTCCT-TATT
451 GGCACTATAAACACATTCTCCTCT-TT
* * * * *
227648 AAGATAAATGATATTGAAGA-TTTCTTTTGCATGGATATCTTTTCTTTGCCGTATTTTCCTTAAA
1 AGGATAAATGATATTGATGATTTTCTTTTCCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAA
* * * * * *
227712 ATTAGAGTTCATCCCTTAAATAA-A-ATGGGCATCAATTCTCGTAACAGTCTCCATTCTTTTAAA
66 ATCAAAGTTCATCCCTTAAATAAGACA-AGG-ATCGATTCTTGTAACAGTCTCCATTCTTTTCAA
* * * * * *** *
227775 GAATGGGATGCTAAAACGCATTACCTTCTTTAGGATACAAGTTGTTGATGCTTTGGTGTCGTAAG
129 GATTGGGAAGCTAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAG
* * * * *
227840 AAAAACTTTTGTTTCTACCATTTTTTTATAGAACCAAAGTTTATCTCTAAAATAAGACAAACATG
194 AAAAGCTTTTCTTTCCACCA-TTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATG
* * * * * ** *
227905 AATACCCATACTAATCCCTATTCTTTTTCGAATTAGGTACCATATGCATAGTCTT-CTCACTAGG
258 AATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCCTCATTAGG
* * * * *
227969 ATACACGATATTGATGTTTTAGTTTT-GCAAGAAAGGCATTTTTCCCACCTATTTTTTGTAAAGC
323 ATACACGATATTGATGCTTTGGTTTTCGCAAGAAAGG--TTTTTTCCACC-AATTTTTGTAAAGT
* * *
228033 CTAACTTTGAGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATT
385 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATT
* * *
228098 AGGCACCATAAACACATTCCCCTCATT
450 AGGCACTATAAACACATTCTCCTCTTT
* *** *
228125 AGGAAAAATGATATTGATGACTTTT-TTTTGTGTGGAAATCTTTTC--TGCCCTATTTT-CTGTC
1 AGGATAAATGATATTGATGA-TTTTCTTTTCCATGGAAATCTTTTCTTTGCCCTATTTTCCT-TA
* * ** * * * *
228186 AAACCAAAGTTCATCCCCTAAATAAGACAAGGATAAATTCTTATAACAATCTCCGTTCTTTTGAA
64 AAATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTTGTAACAGTCTCCATTCTTTTCAA
* * * *
228251 GATTTGGAAGCTAAAACGCATTCCTTTCATTAGGATGCATGACATTGATGCTTTGATGTCGCAAG
129 GATTGGGAAGCTAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAG
**
228316 AAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACACAA
194 AAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGA
* * *
228381 ATACTCATACTAAACCCCATTCTTTTTAGGATTAGGCACCATTAACATAGTCTT-CACATTAGGA
259 ATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCCTCATTAGGA
* * *
228445 TACACGATATTGATGCTTTGG-TTTCGTAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAATCT
324 TACACGATATTGATGCTTTGGTTTTCGCAAGAAAGG--TTTTTTCCACCAATTTTTGTAAAGTCT
* * **
228509 AAGTTTGTGCCTTAAATGAGACAAATGTGGATTCTTA-TAATGATCTTCATTCATTTTGTGATTA
387 AAGTTCGTGCCTCAAATGAGACAAACATGGATTC-TAGTAATGATCTTCATTCATTTTGTGATTA
* *
228573 TGCACCAT-AACACATTCTCCT-TATT
451 GGCACTATAAACACATTCTCCTCT-TT
* * * * *
228598 AGAATAAATGATATAGATGATTTTCTTTTCCATGGAAATCTTTCCTTTGCCTTATTTTCCTTGAA
1 AGGATAAATGATATTGATGATTTTCTTTTCCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAA
* * * ** ** *
228663 ATCAAAGTTTATCCCTTAAACAAGATAAAAATTTATTCTTGTAACAGTCTCCATTCTTTTCGAGA
66 ATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGA
* * * * *
228728 TTTGGAAGCT-AAATGCATTCTCTTCATTAGGATACATGACATTGATGATTTGGTGTCACAAGAA
131 TTGGGAAGCTAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAA
* ** * **
228792 AAGCTTTTCTTACCAAAATTTTTTATAAAATCAAAGTTTATCTCTTAAATAAGACAAACACAAAT
196 AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAAT
** *
228857 ACTCATACTAATCCCCATTCTTTTTTCGATTAGGCACCATAAACATTGTCTT-CTCATTAGGATA
261 ACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCCTCATTAGGATA
* * * * * *
228921 CACGATATTGATGCTTTAG-TTTCACAAGAAAGGCTTTCTTCCCACTAATTTTGGTAAAATCTAA
326 CACGATATTGATGCTTTGGTTTTCGCAAGAAAGG-TTT-TTTCCACCAATTTTTGTAAAGTCTAA
* * *
228985 GTTCGTGCCTCAAATAAGATAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGC
389 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGC
* *
229050 GCTATAAACACATTCTCCTCATT
454 ACTATAAACACATTCTCCTCTTT
* * * ** * **
229073 AGGAAAAATGATATTGATCATTTTTTTTTTGAATAGAAATCTTTTC--TGCCCTATTTTCCTGCA
1 AGGATAAATGATATTGATGA-TTTTCTTTTCCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAA
* * * * *
229136 AATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTGTTGTAATAGTCTCCATTCTTTTAAAG
65 AATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTTGTAACAGTCTCCATTCTTTTCAAG
* * ** * *
229201 AATGGGAAGCTAAAACGCAATCTATTCTTTAGGATACATGACACTGATGCTTTGGTGTCGCAAGA
130 ATTGGGAAGCTAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* ** * * ** * *
229266 AAAGCTTTTCTTTCTACCATTTTTGGTAAAATTAAAGTTTATCTCCAAAAGAAGACAAACTTGAA
195 AAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAA
* * * * * *
229331 TACTTATCCTAAT-CCCATTAC-TTTTCGGATTTGGCACCGTAAACATAATCTT-CTCATTAGGA
260 TACTCATACTAATCCCCATT-CTTTTTAGGATTAGGCACCATAAACATAGTCTTCCTCATTAGGA
* * * *
229393 TACACGATATTGATACTTT-GTTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTGGAAAAGTCT
324 TACACGATATTGATGCTTTGGTTTTCGCAAGAAAGG-TTTTTT-CCACCAATTTTTGTAAAGTCT
* * * **
229457 AAGTTCGTGCCTGAAATGAGACAACCATGGATTCTAGTAATGATCTTCATTCTTTTTGAAATTAG
387 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAG
*
229522 GCACTATAATCACATTCTCCT-TGTT
452 GCACTATAAACACATTCTCCTCT-TT
* * * *
229547 AGGATAAATTATATTGATGATTTTCTTTTCCATGAAAATCTTTTTTTTACCCTATTTTCCTTAAA
1 AGGATAAATGATATTGATGATTTTCTTTTCCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAA
* * * * *
229612 ATCAAAGTCCAT-CGTTCAAATAAGACAAGGATCGATTCTTGTAATAGTCTCCACTCTTTTGAAG
66 ATCAAAGTTCATCCCTT-AAATAAGACAAGGATCGATTCTTGTAACAGTCTCCATTCTTTTCAAG
* * ** *
229676 ATTGGGAAGCTAAAATGCATTTCCTTCATTAAAACACATGACATTGATGCTTTGAG-GTCGCAAG
130 ATTGGGAAGCTAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTG-GTGTCGCAAG
* * **
229740 AGAAA-CTTTTCTTTCCACCATTTTTTATGGAATAAAAGTTTATCTCTTAAATAAGACAAACACA
194 A-AAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATG
* * * * * * *
229804 AATACTCATACTAATCCCTATTCTTGTTAGGATTAAGCACCATTAATATAGTCTT-CACATGAGG
258 AATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCCTCATTAGG
* * *
229868 ATACACGATATTGATGCTTTAG-TTTCACAAGAAA-GTCATTTTTCCTACCAATTTTTGTAAAGC
323 ATACACGATATTGATGCTTTGGTTTTCGCAAGAAAGGT--TTTTTCC-ACCAATTTTTGTAAAGT
* * * * *
229931 CTATGTTCGTGCCTCAAATGAGACAAACTTAGATTCTTGTAATGATTTTCATTCATTTTGTGATT
385 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATT
*
229996 AGGCCCTATAAACACATTCTCCTCATTT
450 AGGCACTATAAACACATTCTCCTC-TTT
* ** *** *
230024 -GGATAAATTATATCAATGATTTTCTTTTCCACAAAAATCTTTTCTTTGCCCTATTTTCTTTAAA
1 AGGATAAATGATATTGATGATTTTCTTTTCCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAA
** * * *
230088 ATCAAAACTCATCCCCTAAATAAGACAAGGATCGATTCTTGTAACAGTCTCCATCCTTTTGAAGA
66 ATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGA
* *
230153 TTAGGAAGCTAAAACGCATTTCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAA
131 TTGGGAAGCTAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAA
* * * * * *
230218 AAGCTTTTCTTTCC-CTTACTTTTTATAGAATCATAGTTCATCTTTTAAATAAGACAAACTTGAA
196 AAGCTTTTCTTTCCAC-CATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAA
* * * * * * * *
230282 TACTCATGCTGAT-CCCATTATTTTTCGAATTTGGCACCGTAAACATAGTCTT-CTCTTTAGGAT
260 TACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCCTCATTAGGAT
* * *
230345 ACATGATATTGATGCTTTGGTTTT-GCAAGAAAGGCTTTCTTCCTACCAA-TTTTGGAAACGTCT
325 ACACGATATTGATGCTTTGGTTTTCGCAAGAAAGG-TTTTTTCC-ACCAATTTTTGTAAA-GTCT
* * ** *
230408 AAGTTCGTGCCTCAAATGAGACAACCATGG-TTCTAGAAATGATCTTCATTCATTTTGAAATTAA
387 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAG
230472 GCACTATAAACACATTCTCCT-TATT
452 GCACTATAAACACATTCTCCTCT-TT
* * ** *
230497 AGGATAAATTATATTGATGATTTT-TTTT-TATCAAAATCTTTTCTTTGCCCTATTTTCCTCAAA
1 AGGATAAATGATATTGATGATTTTCTTTTCCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAA
* * * * *
230560 TTCAAAGTCCATCCCTTAAAAAAAACAAGGATCGATTCTTGTAACAGTCTCCATTCTTTTGAAGA
66 ATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGA
* * * * * **
230625 TTGGGAAGCTAACACGCAATCCCTTCATTAAGATACATAACATTAATGCTTTGGTGTCATAAGAA
131 TTGGGAAGCTAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAA
* * * * **
230690 GAGCTTTTCTTCCCACCATTTTTTATAGAATCAAAGTTTGTCTCTCTTAAATAAGACACACACAA
196 AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAG-TT-TATCTCTTAAATAAGACAAACATGA
* * * * *
230755 ATACTCATACTGATCTCCATTCTTTTTAGGATTAGGCACCATTAACACAGTCTT-CACATTAGGA
259 ATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCCTCATTAGGA
*
230819 TACACGATATTGATGCTTTGG-TTTCGCAAGAAA-GTCATTTTTCTCACCAATTTTTGTAAAGCC
324 TACACGATATTGATGCTTTGGTTTTCGCAAGAAAGGT--TTTTTC-CACCAATTTTTGTAAAGTC
* * * * *
230882 TAAGTTCGTGTCT-ACAATGAGACAAACTTAGATTCTTGTAATGATCCTCATTCATTTTGTGATT
386 TAAGTTCGTGCCTCA-AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATT
* * *
230946 AGGCCCTATAAACACATTCTCTTCATT
450 AGGCACTATAAACACATTCTCCTCTTT
* * * * * *
230973 AGGATAAATTATATTGATGATTTTCTTTCCCATGAAAATATTTTCTTTGTCCTATTTTCCTTGAA
1 AGGATAAATGATATTGATGATTTTCTTTTCCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAA
* * * *
231038 ATCAAAATTCATCCCATAAATAAGACAATGATCGATTCTTGTAACAGTCTCCATTCTTTTGAAGA
66 ATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGA
*
231103 TTGGGAAGCTAAAACGCATTCCCTTCATTAGGAGACATGACATTGATGCTTTGGTG-CTGCAAGA
131 TTGGGAAGCTAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC-GCAAGA
* * * *
231167 AAAGCTTTTCTTTCCACCACTTTTTATAAAATCAAAGTTTATCTCTTAAATAAGACAAACTTAAA
195 AAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAA
* * * * *
231232 TACTCATACTAAT-CCCATTATTTTTCGGATTTGGCACCGTAAACATAGTCTT-CACATTAGGAT
260 TACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCCTCATTAGGAT
* * * * * * * *
231295 ACGCAATATTGATGCTTTGG-TTTCGCTAGAAAGGCTCTTCCCACCAATTTTTGAAAAGCCTAAG
325 ACACGATATTGATGCTTTGGTTTTCGCAAGAAAGGTTTTTTCCACCAATTTTTGTAAAGTCTAAG
* * * **
231359 TTTGTGCCTCAAATGAGACAACCATGGATTCTACTAATGATCTTCATTCATTTTGAAATTAGGCA
390 TTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCA
* *
231424 CTATAAACACATTCTCCGCATT
455 CTATAAACACATTCTCCTCTTT
* * * * *
231446 AGGATAAATTATATTAATGATTTT-TTTT-CATGAAAATCTTTTCTTT-CTCGATTTTCCTTAAA
1 AGGATAAATGATATTGATGATTTTCTTTTCCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAA
* * * * * *
231508 ATTAAAGTTCATCCCTTAAACAAGATAAGGATTGATTCTGGTAACAGTCTCCACTCTTTTCAAGA
66 ATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGA
* * *
231573 TTTGGAAGCTAAAACGCATTCCCTTTATTAGGATACATGACGTTGATGCTTTGGTGTCGCAAGAA
131 TTGGGAAGCTAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAA
231638 GTTTGTCTCT
Statistics
Matches: 4538, Mismatches: 753, Indels: 237
0.82 0.14 0.04
Matches are distributed among these distances:
466 3 0.00
467 24 0.01
468 144 0.03
469 122 0.03
470 216 0.05
471 24 0.01
472 251 0.06
473 361 0.08
474 1099 0.24
475 904 0.20
476 893 0.20
477 294 0.06
478 200 0.04
479 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.36
Consensus pattern (476 bp):
AGGATAAATGATATTGATGATTTTCTTTTCCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAA
ATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGA
TTGGGAAGCTAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAA
AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAAT
ACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCCTCATTAGGATA
CACGATATTGATGCTTTGGTTTTCGCAAGAAAGGTTTTTTCCACCAATTTTTGTAAAGTCTAAGT
TCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCAC
TATAAACACATTCTCCTCTTT
Found at i:228979 original size:158 final size:158
Alignment explanation
Indices: 228277--229446 Score: 479
Period size: 158 Copynumber: 7.4 Consensus size: 158
228267 CGCATTCCTT
* * * * * * *
228277 TCATTAGGATGCATGACATTGATGCTTTGATGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAAGCTTTTCTTCCCACCAATTTTT
* *
228342 ATAGAATCAAAGTTTATCTCTTAAATAAGACAAACACAAATACTCATACTAAACCCCATTCTTTT
66 ATAAAATCAAAGTTTATCTCTTAAATAAGACAAACACAAATACTCATACTAATCCCCATTCTTTT
* * *
228407 TAGGATTAGGCACCATTAACATAGTCTTC
131 T-TGATTAGGCACCATAAACATTGTCTTC
* * ** * *
228436 ACATTAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCATTT-TTCCCACCAATTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAAGCTTTTCTTCCCACCAATTTTT
* * * * ***** * * * * **
228500 GTAAAATCTAAGTTTGTGC-CTTAAATGAGACAAATGTGGATTCTTATAATGATCTTCATTCATT
66 ATAAAATCAAAGTTTAT-CTCTTAAATAAGACAAACACAAATACTCATACTAATCCCCATTC-TT
* * *
228564 TTGTGATTATGCACCATAACACA-T-TCTCC
129 TTTTGATTAGGCACCATAA-ACATTGTCTTC
* * * * * ** * * * * ** **
228593 TTATTAGAATAAATGATATAGATGATTTTCTTTTC-CATGGAAATCTTTCCTTTGC-CTTATTTT
1 TCATTAGGATACATGATATTGATG-CTTTGGTTTCACAAGAAAAGCTTTTCTTCCCACCAATTTT
* * * * * *** * ** * *
228656 CCT-TGAAATCAAAGTTTATCCCTTAAACAAGATAAAAATTTATTCTTGTAAC-AGTCTCCATTC
65 --TATAAAATCAAAGTTTATCTCTTAAATAAGACAAACACAAATACTCAT-ACTAATCCCCATTC
** * * * *
228719 TTTTCGAGATTTGGAAGC-TAAATGCATTCTC-T-
127 TTTT-TTGATTAGGCACCATAAA--CATTGTCTTC
* * * * *
228751 TCATTAGGATACATGACATTGATGATTTGGTGTCACAAGAAAAGCTTTTCTTACCA-AAATTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAAGCTTTTCTTCCCACCAA-TTTT
228815 TATAAAATCAAAGTTTATCTCTTAAATAAGACAAACACAAATACTCATACTAATCCCCATTCTTT
65 TATAAAATCAAAGTTTATCTCTTAAATAAGACAAACACAAATACTCATACTAATCCCCATTCTTT
228880 TTTCGATTAGGCACCATAAACATTGTCTTC
130 TTT-GATTAGGCACCATAAACATTGTCTTC
* * * * *
228910 TCATTAGGATACACGATATTGATGCTTTAGTTTCACAAGAAAGGC-TTTCTTCCCACTAATTTTG
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAAGCTTTTCTTCCCACCAATTTTT
* * ** * * * * * * * **
228974 GTAAAATCTAAGTTCGTGC-CTCAAATAAGATAAACATAGATTCT-AGTAATGATCTTCATTCAT
66 ATAAAATCAAAGTTTAT-CTCTTAAATAAGACAAACACAAATACTCA-TACTAATCCCCATTC-T
* * * * *
229037 TTTGTGATTAGGCGCTATAAACACAT-TCTCC
128 TTTTTGATTAGGCACCATAAACA-TTGTCTTC
* * ** *** * * * *
229068 TCATTAGGAAAAATGATATTGAT-CATTTTTTTTTTGAATAGAAATCTTTTC-T-GC-CCTATTT
1 TCATTAGGATACATGATATTGATGC-TTTGGTTTCACAAGA-AAAGCTTTTCTTCCCACCAATTT
** * * * * ** ** * * *
229129 TCCTGCAAATCAAAGTTCATCCCTTAAATAAGACAAGCATC-AATTGTTGTAATAGTCTCCATTC
64 TTAT-AAAATCAAAGTTTATCTCTTAAATAAGACAAACA-CAAATACTCATACTAATCCCCATTC
** * * * * * * *
229193 TTTTAAAGAATGGGAAGC-TAAAACGCAATCTATTC
127 TTTT-TTGATTAGGCACCAT-AAA--CATTGTCTTC
* * * * * *
229228 T--TTAGGATACATGACACTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTACC-ATTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAAGCTTTTCTTCCCACCAATTTTT
* * ** * *** * *
229290 GGTAAAATTAAAGTTTATCTCCAAAAGAAGACAAACTTGAATACTTATCCTAAT-CCCATTACTT
66 -ATAAAATCAAAGTTTATCTCTTAAATAAGACAAACACAAATACTCATACTAATCCCCATT-CTT
** * * **
229354 TTCGGATTTGGCACCGTAAACATAATCTTC
129 TTTTGATTAGGCACCATAAACATTGTCTTC
* * * *
229384 TCATTAGGATACACGATATTGATACTTTGTTTTCGA-AAGAAAGGCTTTT-TTCCCACCAATTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTC-ACAAGAAAAGCTTTTCTTCCCACCAATTTT
229447 GGAAAAGTCT
Statistics
Matches: 729, Mismatches: 230, Indels: 105
0.69 0.22 0.10
Matches are distributed among these distances:
156 8 0.01
157 88 0.12
158 459 0.63
159 159 0.22
160 15 0.02
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (158 bp):
TCATTAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAAGCTTTTCTTCCCACCAATTTTT
ATAAAATCAAAGTTTATCTCTTAAATAAGACAAACACAAATACTCATACTAATCCCCATTCTTTT
TTGATTAGGCACCATAAACATTGTCTTC
Found at i:230478 original size:950 final size:949
Alignment explanation
Indices: 225756--242457 Score: 15484
Period size: 950 Copynumber: 17.7 Consensus size: 949
225746 GGTGTCTACA
* * * * *
225756 AGGATAAATGATATTGCTGATTTT-TTTTCCATGGAAATCTTTTCTTTGCCCTATTTTTCTAAAA
1 AGGATAAATTATATTGATGATTTTCTTTTCCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAA
* *
225820 ATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCTTTTCG-AG
66 ATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTCGTAACAGTCTCCATTCTTTT-GAAG
* * * * * * *
225884 ATTGGGAACCAAAAACACCTTCACTTCATTAGGAAAC-TGACATTAATGCTTTGGTGTCGCAAGA
130 ATTGGGAAGCTAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * * * * *
225948 AAAGCTCTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTTTCCTAAATAAGACAAACA-ACA
195 AAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACACA-A
* * * * *
226012 ATAGTCATACTAATCCCTATTCATTTCAGGATTAGGCACC-TTAAATATAGTTTTCTCATTAGGA
259 ATACTCATACTAATCCCTATTCTTTTTAGGATTAGGCACCATT-AACATAGTCTTCTCATTAGGA
* * * * * * *
226076 TACATGATAATGATGCTTTGGATTCGCAAGAAAGGCTTCCTTCTCC-CCAATTTTTGCAAAGTCT
323 TACACGATATTGATGCTTTAGTTTCACAAGAAAGGCTT--TT-TCCACCAATTTTTGTAAAGCCT
* * * *
226140 AAGTTCCTGGCTCAAATGAGACAAACTTGGATTCAAGTAATGATCTTCATTCAATTTT-TGGATT
385 AAGTTCGTGCCTCAAATGAGACAAACTTAGATTCTAGTAATGATCTTCATTC-ATTTTGT-GATT
* *
226204 AGGCACC-ATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGTAA
448 AGGC-CCTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCCATGAAA
* * * * * *
226268 ATTTTTTCTTCGCCCCATTTTCCTTAAAATCAAAGTTCATCCCTTAAATATGAAAAGTATCGATT
512 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATT
* * * * * * * *
226333 CTCACAACATTTTCCATTCTTTTCAAGATTGGGATG-TCAAAACACATTCCCTTCAATAGGATAC
577 CTTATAACAGTCTCCATTCTTTTGAAGATTGGGAAGCT-AAAACGCATTCCCTTCATTAGGATAC
* * * * * *
226397 ATGATATTGACGCTTTGGTGTTGTAAGAAAAGCTTTTCTTTCCACT-GTTTTTGATAGAATAAAA
641 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTACTTTTT-ATAGAATCAAA
* * * * * * ***
226461 GTTTGTCTCTTAAACAAGACAAA-TATGAACAGTCACACTATTCCCCATTCA-TTGAAGGATTAG
705 GTTTATCTCTTAAATAAGACAAACT-TGAATACTCATACTAAT-CCCATT-ATTTTTCGGATTAG
** * * * * * *
226524 GTGCCATAAACGTAGTCTTC-CTATTATGATACACAATATTGATGCTTTGGTTTTAG-AAAAAAT
767 GCACCATAAACATAGTCTTCTC-ATTAGGATACACGATATTGATGCTTTGG-TTTCGCAAGAAAG
* * * * * * *
226587 G-TTTCCTTTCCGCCAATTTTTGTAAAGTC-AAGTTCGTGCCTTAAATAAAACAAACATAGATTC
830 GCTTT-CTTCCCACCAATTTTTGGAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTC
* ** *
226650 TAGCAATGATCTTCATTCATTTTGTGATTAGGCA-TATAAACACATTTTCCTCT-TT
894 TAGTAATGATCTTCATTCATTTTGAAATTAGGCACTATAAACACATTCTCCT-TATT
* * *
226705 AGGATAAATTATATTGATGATTTTCTTTTGCATCG-AAATCCTTTCTTTAG-CTTATTTTCCTTA
1 AGGATAAATTATATTGATGATTTTCTTTTCCAT-GAAAATCTTTTCTTT-GCCCTATTTTCCTTA
* * ** * * * * * *
226768 AAATCAAAGTTCATCTCTTAAATAAGACTACCATCGTTTCTCATAATAGTCTCTAGTCTTTTCAA
64 AAATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTCGTAACAGTCTCCATTCTTTTGAA
* * * * * *
226833 GATTGGGAA-CGAAAAACACATTCCCTTCAGTAGGATACTTGGCATTAATGCTTTGCG-GTCGCA
129 GATTGGGAAGC-TAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTG-GTGTCGCA
* * * *
226896 AGAAAAGCTTTT-TCTTCCACCGA-TTTTGATAGAATCGAAGTTTGTCTCTTAAATAAGATAAAC
192 AGAAAAGCTTTTCT-TTCCACC-ATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAAC
** * * * * * * *
226959 ATGAATA-T--TA-T--TCCCCATTCTTTTCAAGATTAGGCAGCATAAACATAGTTTTCTCATAA
255 ACAAATACTCATACTAATCCCTATTCTTTTTAGGATTAGGCACCATTAACATAGTCTTCTCATTA
* * * * * * *
227018 AGATACACGATATTGATGCATTGGTTTCGA-AAGAAAGGTTTTCTTCC-CCTTACTTATGTAAAG
320 GGATACACGATATTGATGCTTTAGTTTC-ACAAGAAAGGCTTT-TTCCACC-AATTTTTGTAAAG
* * * * * * *
227081 TCTAAGTTCATGCCTCAAAAGAGCCAAA-TATGGATTCTAGTAATGATCTTCCTTCATTTTGTAA
382 CCTAAGTTCGTGCCTCAAATGAGACAAACT-TAGATTCTAGTAATGATCTTCATTCATTTTGTGA
* * * * * * *
227145 TTGGGCACTATAAACACATTCTCCTTATTAGGATGAATGATACTAATGATTTTCTTTATCC-TGG
446 TTAGGCCCTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTT-TCCATGA
* * * *
227209 AAAT-TATTTCTTTTCCCTATTTTCCTTAAAATCAAAGTTCCTCCCTTAAATATGACAAGCATCG
510 AAATCT-TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGGATCG
* * * ** * ** * * * *
227273 ATTCTCATAACACTGTCCAAGCTTTTCAAAGATTGCAAACCAAAAACACGTTCCCTTCATTAGGA
574 ATTCTTATAACAGTCTCCATTCTTTT-GAAGATTGGGAAGCTAAAACGCATTCCCTTCATTAGGA
* *
227338 TACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTCTTCTTTCCA--ACGGTTTTGATAGAAT
638 TACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTAC--TTTTTATAGAAT
* * * *
227401 CAAAG-TT-TGTCTTAAATAAGACAAACATGAATAGTCATACTAATCCC--TATCTTTTCACGAT
701 CAAAGTTTATCTCTTAAATAAGACAAACTTGAATACTCATACTAATCCCATTAT-TTTTC-GGAT
* * *
227462 TAGGCACCATAAACATAGTCTTCTCATTTGGACACACGATATTGATGCTTTGGTTTCGTAAGAAA
764 TAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAA
** * * *
227527 AACTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTC
829 GGCTTTCTTCCCACCAATTTTTGGAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTC
* * * ** * *
227592 AAATAATTATCTTCATTCATTTTGTGATTAGGCATTATAAATACATTCTCCTTATT
894 TAGTAATGATCTTCATTCATTTTGAAATTAGGCACTATAAACACATTCTCCTTATT
* * * * * * *
227648 AAGATAAATGATATTGAAGA-TTTCTTTTGCATGGATATCTTTTCTTTGCCGTATTTTCCTTAAA
1 AGGATAAATTATATTGATGATTTTCTTTTCCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAA
* * * * *
227712 ATTAGAGTTCATCCCTTAAATAA-A-ATGGGCATCAATTCTCGTAACAGTCTCCATTCTTTTAAA
66 ATCAAAGTTCATCCCTTAAATAAGACA-AGG-ATCGATTCTCGTAACAGTCTCCATTCTTTTGAA
* * * * * *** *
227775 GAATGGGATGCTAAAACGCATTACCTTCTTTAGGATACAAGTTGTTGATGCTTTGGTGTCGTAAG
129 GATTGGGAAGCTAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAG
* * * * * **
227840 AAAAACTTTTGTTTCTACCATTTTTTTATAGAACCAAAGTTTATCTCTAAAATAAGACAAACATG
194 AAAAGCTTTTCTTTCCACCA-TTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACACA
* * * * * *
227905 AATACCCATACTAATCCCTATTCTTTTTCGAATTAGGTACCA-TATGCATAGTCTTCTCACTAGG
258 AATACTCATACTAATCCCTATTCTTTTTAGGATTAGGCACCATTA-ACATAGTCTTCTCATTAGG
* ** *
227969 ATACACGATATTGATGTTTTAGTTTTGCAAGAAAGGCATTTTTCCCACCTATTTTTTGTAAAGCC
322 ATACACGATATTGATGCTTTAGTTTCACAAGAAAGGC-TTTTT-CCACC-AATTTTTGTAAAGCC
* * * * *
228034 TAACTTTGAGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTA
384 TAAGTTCGTGCCTCAAATGAGACAAACTTAGATTCTAGTAATGATCTTCATTCATTTTGTGATTA
* * *** *
228099 GGCACC-ATAAACACATTCCCCTCATTAGGAAAAATGATATTGATGACTTTT-TTTTGTGTGGAA
449 GGC-CCTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA-TTTTCTTTTCCATGAAA
* * * **
228162 ATCTTTTC--TGCCCTATTTT-CTGTCAAACCAAAGTTCATCCCCTAAATAAGACAAGGATAAAT
512 ATCTTTTCTTTGCCCTATTTTCCT-TAAAATCAAAGTTCATCCCTTAAATAAGACAAGGATCGAT
* * * * *
228224 TCTTATAACAATCTCCGTTCTTTTGAAGATTTGGAAGCTAAAACGCATTCCTTTCATTAGGATGC
576 TCTTATAACAGTCTCCATTCTTTTGAAGATTGGGAAGCTAAAACGCATTCCCTTCATTAGGATAC
* * *
228289 ATGACATTGATGCTTTGATGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAG
641 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTACTTTTTATAGAATCAAAG
*** * * *
228354 TTTATCTCTTAAATAAGACAAACACAAATACTCATACTAAACCCCATTCTTTTTAGGATTAGGCA
706 TTTATCTCTTAAATAAGACAAACTTGAATACTCATACT-AATCCCATTATTTTTCGGATTAGGCA
* * *
228419 CCATTAACATAGTCTTCACATTAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCATT
770 CCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGC-TT
* * * * **
228484 T-TTCCCACCAATTTTTGTAAAATCTAAGTTTGTGCCTTAAATGAGACAAATGTGGATTCTTA-T
834 TCTTCCCACCAATTTTTGGAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTC-TAGT
** * *
228547 AATGATCTTCATTCATTTTGTGATTATGCACCAT-AACACATTCTCCTTATT
898 AATGATCTTCATTCATTTTGAAATTAGGCACTATAAACACATTCTCCTTATT
* * * * * * *
228598 AGAATAAATGATATAGATGATTTTCTTTTCCATGGAAATCTTTCCTTTGCCTTATTTTCCTTGAA
1 AGGATAAATTATATTGATGATTTTCTTTTCCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAA
* * * ** ** *
228663 ATCAAAGTTTATCCCTTAAACAAGATAAAAATTTATTCTTGTAACAGTCTCCATTCTTTTCG-AG
66 ATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTCGTAACAGTCTCCATTCTTTT-GAAG
* * * * *
228727 ATTTGGAAGCT-AAATGCATTCTCTTCATTAGGATACATGACATTGATGATTTGGTGTCACAAGA
130 ATTGGGAAGCTAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* ** *
228791 AAAGCTTTTCTTACCAAAATTTTTTATAAAATCAAAGTTTATCTCTTAAATAAGACAAACACAAA
195 AAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACACAAA
* ** * *
228856 TACTCATACTAATCCCCATTCTTTTTTCGATTAGGCACCATAAACATTGTCTTCTCATTAGGATA
260 TACTCATACTAATCCCTATTCTTTTTAGGATTAGGCACCATTAACATAGTCTTCTCATTAGGATA
* * **
228921 CACGATATTGATGCTTTAGTTTCACAAGAAAGGCTTTCTTCCCACTAATTTTGGTAAAATCTAAG
325 CACGATATTGATGCTTTAGTTTCACAAGAAAGGCTTT-TT-CCACCAATTTTTGTAAAGCCTAAG
* * * *
228986 TTCGTGCCTCAAATAAGATAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCG
388 TTCGTGCCTCAAATGAGACAAACTTAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCC
* * * **
229051 CTATAAACACATTCTCCTCATTAGGAAAAATGATATTGATCATTTTTTTTTTGAAT-AGAAATCT
453 CTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA-TTTTCTTTTCCATGA-AAATCT
** * * * *
229115 TTTC--TGCCCTATTTTCCTGCAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTGTTG
516 TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTTA
* * * * ** *
229178 TAATAGTCTCCATTCTTTTAAAGAATGGGAAGCTAAAACGCAATCTATTCTTTAGGATACATGAC
581 TAACAGTCTCCATTCTTTTGAAGATTGGGAAGCTAAAACGCATTCCCTTCATTAGGATACATGAC
* * * * * *
229243 ACTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTACCA-TTTTTGGTAAAATTAAAGTTTA
646 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTACTTTTT-ATAGAATCAAAGTTTA
** * * * * * *
229307 TCTCCAAAAGAAGACAAACTTGAATACTTATCCTAATCCCATTACTTTTCGGATTTGGCACCGTA
710 TCTCTTAAATAAGACAAACTTGAATACTCATACTAATCCCATTATTTTTCGGATTAGGCACCATA
* * * * *
229372 AACATAATCTTCTCATTAGGATACACGATATTGATACTTTGTTTTCGAAAGAAAGGCTTTTTTCC
775 AACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCC
* *
229437 CACCAA-TTTTGGAAAAGTCTAAGTTCGTGCCTGAAATGAGACAACCATGGATTCTAGTAATGAT
840 CACCAATTTTTGG-AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT
* * *
229501 CTTCATTCTTTTTGAAATTAGGCACTATAATCACATTCTCCTTGTT
904 CTTCATTCATTTTGAAATTAGGCACTATAAACACATTCTCCTTATT
* *
229547 AGGATAAATTATATTGATGATTTTCTTTTCCATGAAAATCTTTTTTTTACCCTATTTTCCTTAAA
1 AGGATAAATTATATTGATGATTTTCTTTTCCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAA
* * * * *
229612 ATCAAAGTCCAT-CGTTCAAATAAGACAAGGATCGATTCTTGTAATAGTCTCCACTCTTTTGAAG
66 ATCAAAGTTCATCCCTT-AAATAAGACAAGGATCGATTCTCGTAACAGTCTCCATTCTTTTGAAG
* * ** *
229676 ATTGGGAAGCTAAAATGCATTTCCTTCATTAAAACACATGACATTGATGCTTTGAG-GTCGCAAG
130 ATTGGGAAGCTAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTG-GTGTCGCAAG
* *
229740 AGAAA-CTTTTCTTTCCACCATTTTTTATGGAATAAAAGTTTATCTCTTAAATAAGACAAACACA
194 A-AAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACACA
* * * * *
229804 AATACTCATACTAATCCCTATTCTTGTTAGGATTAAGCACCATTAATATAGTCTTCACATGAGGA
258 AATACTCATACTAATCCCTATTCTTTTTAGGATTAGGCACCATTAACATAGTCTTCTCATTAGGA
*
229869 TACACGATATTGATGCTTTAGTTTCACAAGAAAGTCATTTTTCCTACCAATTTTTGTAAAGCCTA
323 TACACGATATTGATGCTTTAGTTTCACAAGAAAGGC-TTTTTCC-ACCAATTTTTGTAAAGCCTA
* * *
229934 TGTTCGTGCCTCAAATGAGACAAACTTAGATTCTTGTAATGATTTTCATTCATTTTGTGATTAGG
386 AGTTCGTGCCTCAAATGAGACAAACTTAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG
* * ** **
229999 CCCTATAAACACATTCTCCTCATTTGGATAAATTATATCAATGATTTTCTTTTCCACAAAAATCT
451 CCCTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCCATGAAAATCT
* ** * *
230064 TTTCTTTGCCCTATTTTCTTTAAAATCAAAACTCATCCCCTAAATAAGACAAGGATCGATTCTTG
516 TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTTA
* * *
230129 TAACAGTCTCCATCCTTTTGAAGATTAGGAAGCTAAAACGCATTTCCTTCATTAGGATACATGAC
581 TAACAGTCTCCATTCTTTTGAAGATTGGGAAGCTAAAACGCATTCCCTTCATTAGGATACATGAC
* *
230194 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC-CTTACTTTTTATAGAATCATAGTTCA
646 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC-TACTTTTTATAGAATCAAAGTTTA
* * * * * *
230258 TCTTTTAAATAAGACAAACTTGAATACTCATGCTGATCCCATTATTTTTCGAATTTGGCACCGTA
710 TCTCTTAAATAAGACAAACTTGAATACTCATACTAATCCCATTATTTTTCGGATTAGGCACCATA
* * *
230323 AACATAGTCTTCTCTTTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCC
775 AACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCC
* * *
230388 TACCAA-TTTTGGAAACGTCTAAGTTCGTGCCTCAAATGAGACAACCATGG-TTCTAGAAATGAT
840 CACCAATTTTTGGAAA-GTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT
*
230451 CTTCATTCATTTTGAAATTAAGCACTATAAACACATTCTCCTTATT
904 CTTCATTCATTTTGAAATTAGGCACTATAAACACATTCTCCTTATT
* * *
230497 AGGATAAATTATATTGATGATTTT-TTTT-TATCAAAATCTTTTCTTTGCCCTATTTTCCTCAAA
1 AGGATAAATTATATTGATGATTTTCTTTTCCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAA
* * * * *
230560 TTCAAAGTCCATCCCTTAAAAAAAACAAGGATCGATTCTTGTAACAGTCTCCATTCTTTTGAAGA
66 ATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTCGTAACAGTCTCCATTCTTTTGAAGA
* * * * * **
230625 TTGGGAAGCTAACACGCAATCCCTTCATTAAGATACATAACATTAATGCTTTGGTGTCATAAGAA
131 TTGGGAAGCTAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAA
* * * *
230690 GAGCTTTTCTTCCCACCATTTTTTATAGAATCAAAGTTTGTCTCTCTTAAATAAGACACACACAA
196 AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAG-TT-TATCTCTTAAATAAGACAAACACAA
* * *
230755 ATACTCATACTGATCTCC-ATTCTTTTTAGGATTAGGCACCATTAACACAGTCTTCACATTAGGA
259 ATACTCATACTAATC-CCTATTCTTTTTAGGATTAGGCACCATTAACATAGTCTTCTCATTAGGA
* * *
230819 TACACGATATTGATGCTTTGGTTTCGCAAGAAAGTCATTTTTCTCACCAATTTTTGTAAAGCCTA
323 TACACGATATTGATGCTTTAGTTTCACAAGAAAGGC-TTTTTC-CACCAATTTTTGTAAAGCCTA
* * *
230884 AGTTCGTGTCT-ACAATGAGACAAACTTAGATTCTTGTAATGATCCTCATTCATTTTGTGATTAG
386 AGTTCGTGCCTCA-AATGAGACAAACTTAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAG
* * * *
230948 GCCCTATAAACACATTCTCTTCATTAGGATAAATTATATTGATGATTTTCTTTCCCATGAAAATA
450 GCCCTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCCATGAAAATC
* * * * *
231013 TTTTCTTTGTCCTATTTTCCTTGAAATCAAAATTCATCCCATAAATAAGACAATGATCGATTCTT
515 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTT
* *
231078 GTAACAGTCTCCATTCTTTTGAAGATTGGGAAGCTAAAACGCATTCCCTTCATTAGGAGACATGA
580 ATAACAGTCTCCATTCTTTTGAAGATTGGGAAGCTAAAACGCATTCCCTTCATTAGGATACATGA
* *
231143 CATTGATGCTTTGGTG-CTGCAAGAAAAGCTTTTCTTTCCACCACTTTTTATAAAATCAAAGTTT
645 CATTGATGCTTTGGTGTC-GCAAGAAAAGCTTTTCTTTCCACTACTTTTTATAGAATCAAAGTTT
* * *
231207 ATCTCTTAAATAAGACAAACTTAAATACTCATACTAATCCCATTATTTTTCGGATTTGGCACCGT
709 ATCTCTTAAATAAGACAAACTTGAATACTCATACTAATCCCATTATTTTTCGGATTAGGCACCAT
* * * *
231272 AAACATAGTCTTCACATTAGGATACGCAATATTGATGCTTTGGTTTCGCTAGAAAGGC--TCTTC
774 AAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTC
* * * * *
231335 CCACCAATTTTTGAAAAGCCTAAGTTTGTGCCTCAAATGAGACAACCATGGATTCTACTAATGAT
839 CCACCAATTTTTGGAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT
**
231400 CTTCATTCATTTTGAAATTAGGCACTATAAACACATTCTCCGCATT
904 CTTCATTCATTTTGAAATTAGGCACTATAAACACATTCTCCTTATT
* * *
231446 AGGATAAATTATATTAATGATTTT-TTTT-CATGAAAATCTTTTCTTT-CTCGATTTTCCTTAAA
1 AGGATAAATTATATTGATGATTTTCTTTTCCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAA
* * * * * * *
231508 ATTAAAGTTCATCCCTTAAACAAGATAAGGATTGATTCTGGTAACAGTCTCCACTCTTTTCAAGA
66 ATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTCGTAACAGTCTCCATTCTTTTGAAGA
* * *
231573 TTTGGAAGCTAAAACGCATTCCCTTTATTAGGATACATGACGTTGATGCTTTGGTGTCGCAAG--
131 TTGGGAAGCTAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAA
231636 AAG--------------------T-T----T----G----TCTCTTAAATAAGACAAACA-AGAA
196 AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACACA-AA
* *
231667 TAGTCATACTAATCCCTATTCTTTTTAGGATTAGGCACCATTAACATAGTCTTCACATTAGGATA
260 TACTCATACTAATCCCTATTCTTTTTAGGATTAGGCACCATTAACATAGTCTTCTCATTAGGATA
* ** ** *
231732 CACGATA---A----TT--TTT-ATAACCAA--CTTTTGTAGAGCCTAA-GTTTGT---GCCTCA
325 CACGATATTGATGCTTTAGTTTCACAAGAAAGGCTTTT-TCCA-CC-AATTTTTGTAAAGCCT-A
** * * * ** ** * * * * * **
231781 AAATGGATTCTTGTAATGATCTTCAATCATTTAG-TGATC-AGGCATTGTAAAC-ACATTC-TCC
386 AGTTCG-TGCCTCAAATGA--GACAA--ACTTAGAT--TCTA-GTAATG--ATCTTCATTCATTT
* * ** * * **** ** * * *
231842 T-TG-TTAGG----ATAAATTATATTGACGAT-TTTCTTTTCCATGA-A--AAT-CTTTTCTTTG
441 TGTGATTAGGCCCTATAAA-CACATTCTC-CTCATTAGGATAAATGATATTGATGATTTTCTTTT
* * ** ** * *
231896 CCCT---AA---TTTCCTTG----A-AAT-C--AAAGGC-CA-TTC-T---TCAAATAAGACAAG
504 CCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAG
* * * * *
231941 GATCGATTCTTTTAACAGTTTCCATTCTTTCCG-AGATTTGGAGGCTAAAACGCATTCCCTTCAT
569 GATCGATTCTTATAACAGTCTCCATTCTTT-TGAAGATTGGGAAGCTAAAACGCATTCCCTTCAT
* * * * * *
232005 TAGGATACATGATATTGATGATTTGGTATCGTAAGAAAAGCTTTTCTTTCCACCATTTTTTATAG
633 TAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTACTTTTTATAG
** * *
232070 AATCAAAGTTTATCTCTTAAATAAGACAAA-TACAAATACTCAGACTAATCCCCATT-CTTTTCA
698 AATCAAAGTTTATCTCTTAAATAAGACAAACT-TGAATACTCATACTAAT-CCCATTATTTTTC-
*
232133 GGATTAGGCACCATAAACATAGTCTTCACATTAGGATACACGATATTGATGCTTTGGTTTCGCAA
760 GGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAA
* * * *
232198 GAAAGTCATTT-TTCTCACCAATTTTTGTAAAGCCTAAGTTCGTGCCTCCAAA-GAGACAAACAT
825 GAAAGGC-TTTCTTCCCACCAATTTTTGGAAAGTCTAAGTTCGTGCCT-CAAATGAGACAAACAT
** ** *
232261 GGATTCTTCTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATT
888 GGATTCTAGTAATGATCTTCATTCATTTTGAAATTAGGCACTATAAACACATTCTCCTTATT
** *
232323 AGGAT-AATGGTATTGATGATTTT-TTTTCCATGCAAATCTTTTCTTTGCCCTATTTTCCTTAAA
1 AGGATAAATTATATTGATGATTTTCTTTTCCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAA
* * * *
232386 ATCAAAGTCCATCCCCTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTTG-AG
66 ATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTCGTAACAGTCTCCATTC-TTTTGAAG
* * * * *
232450 ATTGGG-AGCCAAAAACACCTTCACTTCATTAGGAGACATGACATTGATGCTTTGGTGTCGCAAG
130 ATTGGGAAG-CTAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAG
* * * * *
232514 AAAAGCTTTTCTTTTCACCATTTTTAATAGAATCAATGTTTGTCTCTTAAATAAGACAAATA-AG
194 AAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACACA-
* * * ** *
232578 AATAGTCATACCAATCCCTATTCATTTTAGGATTAGGCACCATTAACATAGTCTTCAAATTAGAA
258 AATACTCATACTAATCCCTATTCTTTTTAGGATTAGGCACCATTAACATAGTCTTCTCATTAGGA
* * * * * *
232643 TACACGATATTGATGCTTTGGTTTCGCAGGAAAGTCATTTTTCCTACCAATTTTTGCAAAGCCTC
323 TACACGATATTGATGCTTTAGTTTCACAAGAAAGGC-TTTTTCC-ACCAATTTTTGTAAAGCCTA
* * * * * *
232708 AGTTCGTGCCTTAAATGAGACAAACATAGATTCTTGTAATTATCTTTATTTATTTTGTGATTAGG
386 AGTTCGTGCCTCAAATGAGACAAACTTAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG
* *
232773 CCCTATAAACACATTCTTCTCATTAGGATAAATTATATTGATGATTTTCTTTTCCATGAAAATCT
451 CCCTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCCATGAAAATCT
* * *
232838 TTTCTTTGCCCTATTTTTCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGGATCGATTCTTG
516 TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTTA
* * * * *
232903 TAATAGTCTCTATTCTTTTGAAGATTGGGAAGCTAAAACACATTCCTTTCATTAAGATACATGAC
581 TAACAGTCTCCATTCTTTTGAAGATTGGGAAGCTAAAACGCATTCCCTTCATTAGGATACATGAC
* * * * * *
232968 ATAGATGCTTTGGAGTTGCAAGAAAAGCTTATT-TTCCCACCACTTTTTATAAAATCAAAGTTTA
646 ATTGATGCTTTGGTGTCGCAAGAAAAGCTT-TTCTTTCCACTACTTTTTATAGAATCAAAGTTTA
** * * *
233032 TCTCTTAAATAAGACAAAC-ACAGATACACATACTAATCCTCATTCTTTTTAGGATTAGGCACCA
710 TCTCTTAAATAAGACAAACTTGA-ATACTCATACTAATCC-CATTATTTTTCGGATTAGGCACCA
* * * * * * *
233096 TTAACATAGTCTTCACGTTACGATACATGATATTGATGCTTTGGTTTCACAAGAAAGTCATTT-T
773 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTCT
** * * * * *
233160 TCCCACCAATTTTTCTAGAGCCTAAATTTGTGCCTCAAATGAGACAAACATGGATTCTTGTAATG
837 TCCCACCAATTTTTGGAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* ** * * *
233225 ATCTTCAATCATTTTGTGATTAGCCACTATAAATACATTCTCCTCATT
902 ATCTTCATTCATTTTGAAATTAGGCACTATAAACACATTCTCCTTATT
* * * *
233273 AAGATAAATTATATTGATGACTTTCTTTTCCATAAAAATCTTTTCTTCGCCCTATTTTCCTTAAA
1 AGGATAAATTATATTGATGATTTTCTTTTCCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAA
* * * * *
233338 ATCAAAATTTATCCCTTAAATAAGACAAGTATCTATTCTTGTAACAGTCTCCATTCTTTTTG-AG
66 ATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTCGTAACAGTCTCCATTC-TTTTGAAG
* * * ** *
233402 ATTTGGAAGCTAAAACGCATTCCCTTCATTAGGATATATGACATTCATAATTTGGTGTCGTAAGA
130 ATTGGGAAGCTAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* *
233467 AAAGCTTTTCTTTCCACTATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGATAAACACAAA
195 AAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACACAAA
* * * *
233532 TACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATGAACATAGTCTT-ACATTAGGATA
260 TACTCATACTAATCCCTATTCTTTTTAGGATTAGGCACCATTAACATAGTCTTCTCATTAGGATA
* * * * * *
233596 TACGATATTGATTCTTTGGTTTCACAAGAAAGTCATTTTTCCCAACAATTTTTGTAAAGCTTAAG
325 CACGATATTGATGCTTTAGTTTCACAAGAAAGGC-TTTTT-CCACCAATTTTTGTAAAGCCTAAG
* * * *
233661 TTTGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATCTTCATTCATTTTGTGATTAGGCA
388 TTCGTGCCTCAAATGAGACAAACTTAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGC-
* * * *
233726 CC-ATAAACACATTCTCTTCATTAGGATAACTG-TATTGATGATTTT-TTTTCCACGTAAATCTT
452 CCTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCCATGAAAATCTT
* * * ** * * **
233788 TTCTTTGCCCTGTTTTCCTAAAAATTAAAACTCATCCCTTAAGTAAGACAAGCATCGATTCTCGT
517 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTTAT
* * * ** * *
233853 AACAATCTCCACTCTTTTCG-AGATTGGGAA-CCAAAA-GCACCTTTACTTCATTAGAAGACATG
582 AACAGTCTCCATTCTTTT-GAAGATTGGGAAGCTAAAACGCA--TTCCCTTCATTAGGATACATG
* * *
233915 ACATTGATGCTTTGGTATCACAAGAAAAGCATTTCTTTCCAC--CGTTTTTGATAGAATCAAAGT
644 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTAC-TTTTT-ATAGAATCAAAGT
* ** * ** *
233978 TTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCC--TACTCGTTCAGGATTGGGCA
707 TTATCTCTTAAATAAGACAAACTTGAATACTCATACTAATCCCATTA-TTTTTC-GGATTAGGCA
** * *
234041 CTTTAAACATTGTCTTCTCGTTAGGATACACGATAATT-ATGCTTTGGTTTCGCAAGAAAGGCTT
770 CCATAAACATAGTCTTCTCATTAGGATACACGAT-ATTGATGCTTTGGTTTCGCAAGAAAGGCTT
** * *
234105 TCTTCCC-TTAATTTTTGCAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCAAGTA
834 TCTTCCCACCAATTTTTGGAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTA
** * * * *
234169 ATGATCTTCATTCAATTTTGTGATTAAGCAGC-ATAAACACATTCTTCTCAAT
899 ATGATCTTCATTC-ATTTTGAAATTAGGCA-CTATAAACACATTCTCCTTATT
** * * *
234221 AGGATAAATGGTGTTGATGA-TTT-TTTTCCATGCAAATCTTTTCTTTGCCCTGTTTTCC-TAAA
1 AGGATAAATTATATTGATGATTTTCTTTTCCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAA
* * * * *
234283 ATCAAAGTTTATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTACACTCTTTTGGAGA
66 ATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTCGTAACAGTCTCCATTCTTTTGAAGA
* * * * * * *
234348 TTGGG-AGCCAAAAACACCTTCACTTTATTAGGAGACATGACATTGATGCTTTGGTGTCGTAAGA
131 TTGGGAAG-CTAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * ** * * *
234412 AAAGCTTTTCTTTCCATCGTTTTTGGTAGAATCAAAGTTTGTTTCCTAAATAAGACAAACA-AGA
195 AAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACACA-A
* * * * *
234476 ATAATCATACTAATCCCTATTCGTTTCAGGATTAGG-ACC-TTAAATATAGTTTTCTCATTAGG-
259 ATACTCATACTAATCCCTATTCTTTTTAGGATTAGGCACCATT-AACATAGTCTTCTCATTAGGA
* ** * * *
234538 TACACGATAATGATGCTTCGGGTTTCGCAAGAAAGGCTTTCTTCCACCCAATTTTTGCAAAGTCT
323 TACACGATATTGATGCTT-TAGTTTCACAAGAAAGGCTTT-TTCCA-CCAATTTTTGTAAAGCCT
* * * *
234603 AAGTTCGTGGCTCAAATGAGACAAACATGGATTCAAGTAATGATCTTCATTCAATTTTGTGATTA
385 AAGTTCGTGCCTCAAATGAGACAAACTTAGATTCTAGTAATGATCTTCATTC-ATTTTGTGATTA
* * *
234668 GGCACC-ATAAGCACATTTTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT-ATAA
449 GGC-CCTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCCATGA-AA
** * * * * *
234731 ATCTTTTCTTCACCCCATTTTCCTTAAAATTAAAGTTCATCCCTTAAATATGAAAAGCATCGATT
512 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATT
* ** * * * * *
234796 CCTGCAACATTTTCCATTCTTTTCAAGATTGGGAAG-TCAAAACACATTCCCTTCAATAGGATAC
577 CTTATAACAGTCTCCATTCTTTTGAAGATTGGGAAGCT-AAAACGCATTCCCTTCATTAGGATAC
* ** * * * * *
234860 ATGATATTGACACTTTGGTGTTGCAAAAAAAGCTTTTTTTTCCACT-GTTTTTGATAGAATAAAA
641 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTACTTTTT-ATAGAATCAAA
* * * * * * * ***
234924 GTTTGTCTCTTAAATAAGATAAACATGAACAGTCACACTATTCCCCATTCA-TTGAAGGATTAGG
705 GTTTATCTCTTAAATAAGACAAACTTGAATACTCATACTAAT-CCCATT-ATTTTTCGGATTAGG
** * *
234988 TGCCATAAACATAGTCTTCTCATTATGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCT
768 CACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCT
* * * * ** *
235053 TTCTTTCCACCAATTTTTGAAAAGTC-AAGTTCGTGCCTCGAATAAGACAAACATATATTCTAGC
833 TTCTTCCCACCAATTTTTGGAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
** * * * *
235117 AATGATCTTCATTCATTTTGTGATTAGGCACTATGAACATATTCTTCTCATT
898 AATGATCTTCATTCATTTTGAAATTAGGCACTATAAACACATTCTCCTTATT
* * ** * *
235169 AGGATAAATTATATTAATGATTTTCTTTTGCATCG-AAATCTTTTCTTTAACTTGTTTTCCTTAA
1 AGGATAAATTATATTGATGATTTTCTTTTCCAT-GAAAATCTTTTCTTTGCCCTATTTTCCTTAA
* * ** * * * *
235233 AATCAAAGTTCATCCTTTAAATAAGACTATCATCGATTCTCATAATAGTCTCTATTCTTTTCAAG
65 AATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTCGTAACAGTCTCCATTCTTTTGAAG
* * * * * * * * *
235298 ATTAGGAACCAAAAACACATTCCCTTCAGTAGGATACTTGGCATTGATGCTTTACGT-TCGTAAG
130 ATTGGGAAGCTAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTT-GGTGTCGCAAG
* * * * * * *
235362 AAATA--TTTTTTTTACACCATTTTTGATAGAATCGAAGTTTGTCTCTTGAAA-AAGAAAAACAT
194 AAA-AGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCTCTT-AAATAAGACAAACAC
* * * * * * * * * * *
235424 GAATAGC-CATACTATTCCCCATTCTTTTCAAGATTAAGCACCGTAAACATAGTTTTCTCATAAA
257 AAATA-CTCATACTAATCCCTATTCTTTTTAGGATTAGGCACCATTAACATAGTCTTCTCATTAG
* * ** * * *
235488 GATACACGATATTGATGCGTTGGTTTCGGAAGAAAGGCTTTCTTCC-CCTTACTTTTGTAAAGTC
321 GATACACGATATTGATGCTTTAGTTTCACAAGAAAGGCTTT-TTCCACC-AATTTTTGTAAAGCC
* * * * *
235552 TAAGTTCGTGTCTCAAAAGA-ACTAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTAATT
384 TAAGTTCGTGCCTCAAATGAGAC-AAACTTAGATTCTAGTAATGATCTTCATTCATTTTGTGATT
* ** ** * * * ** *
235616 AGGCTCTATAAACACATTCTTTTTGTTAGGATGAATGATACTAATGATTTTCTTTAGCATGGAAA
448 AGGCCCTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCCATGAAAA
* * * * *
235681 T-TATTTCTTTTCCCTATTTTCCTTTAAATCAAAGTTCATCCCTTAAATATGACAAGCATTGATT
513 TCT-TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATT
* * * ** * * * * * * * *
235745 CTCATAATAGTATCCAAGCTTTTCAAAGATTAGGAACCAAAAACACGTTCCCCTCATTAAGATAC
577 CTTATAACAGTCTCCATTCTTTT-GAAGATTGGGAAGCTAAAACGCATTCCCTTCATTAGGATAC
* *
235810 ATGACATTGATGCTTCGGTGTCGCAAGAAAAGCTTTTCTTTCCA--ACGTATTTGATAGAATCAA
641 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTAC-T-TTTTATAGAATCAA
* * ** * *
235873 AGTTTCTCTCTTAAATAAGACAAACATGAATAGC-CATACTAATCCCCA-TCCTTATCAGGATGA
704 AGTTTATCTCTTAAATAAGACAAACTTGAATA-CTCATACTAAT-CCCATTATTTTTC-GGATTA
* * *
235936 GGCACCATAAACATA-TCTTCTCAATT-GGACACACGATATTGATGCTTTGATTTCACAAGAAAG
766 GGCACCATAAACATAGTCTTCTC-ATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAG
* * * * * *
235999 GCTTTTTTCTCACCAATTTTTGTAAAGTCTAGGTTCATGCCTTAAATGAGACAAACATGGATTC-
830 GCTTTCTTCCCACCAATTTTTGGAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCT
** * *
236063 AGGTAATGATCTTCATTCATTTTGCGATTAGGCACTATAAATACATTCTCCTCATT
895 A-GTAATGATCTTCATTCATTTTGAAATTAGGCACTATAAACACATTCTCCTTATT
* * * * * *
236119 AGGATAAATGATATAGAAGATTTTCTTTTGCATGGATATCTTTTCTTTGCCCTATTTTCCTTAAA
1 AGGATAAATTATATTGATGATTTTCTTTTCCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAA
** * ** ** * *
236184 ATCAGGGTTCATCCCTTAAATATGACAACCATCGATTCTTATAATAGTCTCCATTCTTTTCAAGA
66 ATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTCGTAACAGTCTCCATTCTTTTGAAGA
* * * * * * * *
236249 TTTGGAACCAAAAACACATTCCCCTT-AATAGGATACTTGACATTGATGCTATGGTGTCACAAGA
131 TTGGGAAGCTAAAACGCATT-CCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * * * * **
236313 AAAGCTTTTCTTTTCACCGTTTTTGATAGAATAAAAGTTTGTCTCTTAAATAAGACAAACATGAA
195 AAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACACAAA
* * * * * * *
236378 TAGTCATACTAATCCCCATTCTTTTTAGTATTAGGCACCATAAACATAATCTTCACAGTAGGATA
260 TACTCATACTAATCCCTATTCTTTTTAGGATTAGGCACCATTAACATAGTCTTCTCATTAGGATA
* * * * * * *
236443 CACAATAATGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCAAATTTTTGTAAAGTCTAAG
325 CACGATATTGATGCTTTAGTTTCACAAGAAAGGCTTT-TTCCACC-AATTTTTGTAAAGCCTAAG
* * * * * *
236508 TTCGTGCATCAAATGACG-CAAACATGGACTCAAGTAATGATCTTCATTCAATTTGTGATTAGGC
388 TTCGTGCCTCAAATGA-GACAAACTTAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGC
* * * * * * * *
236572 ACTATAAACACATGCTTCTCTTTAGGATAAATTATATTGAGGATTTTCTTTTGCATCG-AAATTT
452 CCTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCCAT-GAAAATCT
* * * * * * *
236636 TTTATTTGCCTTCTTTTCCTTGAAATCAAAGTTCATCCCTTAAATAAGA-TAGCATCGATTCTTG
516 TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTTA
* * * **
236700 TAACAGTCTCCATAT-TTTTTAAGATTGGGAAGCCAAAACACATTCATTTCATTAGGATACATGA
581 TAACAGTCTCCAT-TCTTTTGAAGATTGGGAAGCTAAAACGCATTCCCTTCATTAGGATACATGA
* *
236764 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTACT-GTTTTTGATAGAATCAAAGTTT
645 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTACTTTTT-ATAGAATCAAAGTTT
* * * * * * * *
236828 GTTTCTTAAATAAGACAAACATGAATAGTGATACAAATCCTCATTCTTTTTAGGATTAGGCACCA
709 ATCTCTTAAATAAGACAAACTTGAATACTCATACTAATCC-CATTATTTTTCGGATTAGGCACCA
* * *
236893 TAAACATAGTCTTCACATTAGGATACACGATATTGATACTTTGGTTTCGCAAGAAAGGCTTTTTT
773 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTT
** * * * * * *
236958 CCCATTAATTTTTGTAAAGTCGAAGTTCTTGCCTCCAATGAGA-TAACATGGATTCTAGTAATAA
838 CCCACCAATTTTTGGAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
** * *
237022 TCTTCATTCATTTTGTGATTAGGCACCATAAACACATTCTCCTCATT
903 TCTTCATTCATTTTGAAATTAGGCACTATAAACACATTCTCCTTATT
* * * * *
237069 AGGATAAATGATATTGATGATTTTCTTTTGCATGTAAGTCTTTTCTTCGCCCTATTTTCCTTAAA
1 AGGATAAATTATATTGATGATTTTCTTTTCCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAA
* * * * * * * * *
237134 ATTAGAGTTCATCCTTTAAATATGAAAAGCATCGATTCTC-TCAACATTTTCCATTCTTTTCAAG
66 ATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTCGT-AACAGTCTCCATTCTTTTGAAG
* * * *
237198 ATTGGGAAGTCT-AAACACATTCCCTTCATTAGGATACATGACATTAATGCTTCGGTG-CTGTAA
130 ATTGGGAAG-CTAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC-GCAA
* * ** * * **
237261 -AAAAGCTTTTGTTTTCACTGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAAACAAACATG
193 GAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACACA
* * * * * * * * *
237325 AATAGTCATACTATTCCCCATTCTTTTCAAGATTTGGCACCATAAACATACTCTTCCCATTAGGA
258 AATACTCATACTAATCCCTATTCTTTTTAGGATTAGGCACCATTAACATAGTCTTCTCATTAGGA
** * * ** * *
237390 TACACGATATTGACACTTTAGTTTCGCAAGAAAGGCTTTCATCCTATTAATTTTTTTAAAGTC-A
323 TACACGATATTGATGCTTTAGTTTCACAAGAAAGGCTTT-TTCC-ACCAATTTTTGTAAAGCCTA
* * * * * *
237454 TA-TTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATTATCTTCCTTCCTTTTGAGATTA-
386 -AGTTCGTGCCTCAAATGAGACAAACTTAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAG
** * * * *
237517 ---CTATAAACACATTCTTATCATTAGGATAATTGATATTGATGATTTTCTTTTGCATGGATATC
450 GCCCTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCCATGAAAATC
* * * * ** * *
237579 TTTTCTTTGCCCTATTTTCCTTAAAATCAGAGTTCATCCCTCAAATATGATAACCATCGGTTCTC
515 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTT
* * * * * * ** *
237644 GTAATAGTCTCCATTCTTTTCAAGATTTGGAACCAAAAACAG-ATTCTTTTCAATAGGATA-ATA
580 ATAACAGTCTCCATTCTTTTGAAGATTGGGAAGCTAAAAC-GCATTCCCTTCATTAGGATACAT-
** * * * ***
237707 GACATTGATGCTTTGGTGTCAAAAGAACAGTTTTTCTTTTCACCGTTTTTTATAGAATCAAAGTT
643 GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTACTTTTTATAGAATCAAAGTT
* ** * * *
237772 TGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCTC--TATTCGTTTCAGGATTACGCA
708 TATCTCTTAAATAAGACAAACTTGAATACTCATACTAATCCCATTATT--TTTC-GGATTAGGCA
* * * *
237835 CCTTAAACATAGTCTTCTCATTAGGATACACGATAATGATGCTTTGATTTCGGAAGAAAGGCTTT
770 CCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT
* * * *
237900 CTTCCC-CTAA-TTTTGCAAAGTTTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCAAGTAA
835 CTTCCCACCAATTTTTGGAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAA
** * * *
237963 TGATCTTCATTCAATTTTGTGATTAGGCACCATAAACACATTCTACTCATT
900 TGATCTTCATTC-ATTTTGAAATTAGGCACTATAAACACATTCTCCTTATT
* * * * **
238014 AGGATAAATGATATTGATTATTTTCTTTTGCATGTAAATCTTTTCTTCACCCTATTTTCCTTAAA
1 AGGATAAATTATATTGATGATTTTCTTTTCCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAA
* * * * * ** * **
238079 ATCAAAGTTCATCCCTTAAATAAAAAAAAGCATCGATTCTCGTAACATTTTCTTTTTTTTTCTAG
66 ATCAAAGTTCATCCCTTAAAT-AAGACAAGGATCGATTCTCGTAACAGTCTCCATTCTTTTGAAG
* * * *
238144 ATTAGGAAG-TCAAAACACATTCCTTTCACTAGGATACATGACATTGATGCTTTGGTG-CTGCAA
130 ATTGGGAAGCT-AAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC-GCAA
* * * * * *
238207 GAAAAGCTTTTCTTTCTACCCTTTTTGATAGAATCAAAGTTTGTCTCTTTAAA-AAAACAAACAT
193 GAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCTC-TTAAATAAGACAAACAC
* * * * * * * * * *
238271 GAATAGTCATACTATTCCCCATTATTTTCAAGATTTGGCACCATAAACGTAGTCTTCTCATTAGG
257 AAATACTCATACTAATCCCTATTCTTTTTAGGATTAGGCACCATTAACATAGTCTTCTCATTAGG
* ** ** **
238336 ATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTCCATCCTACCAATTTTTGTAAAATC-
322 ATACACGATATTGATGCTTTAGTTTCACAAGAAAGGCTT-TTTCC-ACCAATTTTTGTAAAGCCT
* * * * *
238400 ACGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTGATTCATTTTGTGATTAG
385 AAGTTCGTGCCTCAAATGAGACAAACTTAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAG
* * * *
238465 GCACC-ATAAACACATTCTCCTCATTAGGATAAAAGATATTGATGATTTTCTTTTGCATGTAAGT
450 GC-CCTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCCATGAAAAT
* * * * * *
238529 CTTTTCTTCGCCCTATTTTCCTTAAAATTAGAGTTCATCCCTTAAATATGAAAAGCATCGATTCT
514 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCT
** * * * * *
238594 CGTAAGATTTTCCATTCTTTTCAAGATTGGGAAGTCT-AAACACATTCCCTTCATTAGGATACAT
579 TATAACAGTCTCCATTCTTTTGAAGATTGGGAAG-CTAAAACGCATTCCCTTCATTAGGATACAT
* * * * *
238658 GACATTAATGCTTTGATG-CTGTAAAAAAAGCTTTTGTTTCCACTA-TTTTTGATAGAATCAAAG
643 GACATTGATGCTTTGGTGTC-GCAAGAAAAGCTTTTCTTTCCACTACTTTTT-ATAGAATCAAAG
* * * * * * * *
238721 TTTATCTCTGAAATAAAACAAACATGAATAGTC-TACTATTCCCCATT-CTTTTCAAGATTTGGC
706 TTTATCTCTTAAATAAGACAAACTTGAATACTCATACTAAT-CCCATTATTTTTC-GGATTAGGC
* * * * * *
238784 ACCATAAACAT-GCTCTTC-CATTAAGATACATGATATTGACGCTTTAGTTTCGCAAAAAAAGCT
769 ACCATAAACATAG-TCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCT
* * ** **
238847 TTCATCCTATTAATTTTTTTAAAGTC-ATA-TTCGTGCCTCAAATGAGACAAACATGGATTCTAG
833 TTCTTCCCACCAATTTTTGGAAAGTCTA-AGTTCGTGCCTCAAATGAGACAAACATGGATTCTAG
* * * ** *
238910 TAATGATCTTCCTTCATTTTGAGATTAGGCACTATAAACATATTCTTATCATT
897 TAATGATCTTCATTCATTTTGAAATTAGGCACTATAAACACATTCTCCTTATT
* * * *
238963 AGGAT-AATTGATATTGATGATTTTCTTTTGCTTGGATATCTTTTCTTTGCCCTATTTTCCTTAA
1 AGGATAAATT-ATATTGATGATTTTCTTTTCCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAA
* * * ** * * *
239027 AATCAGAGTTCATCCCTTAAATATGAGAACCATAGATTCTCGTAATAGTCTCCATTCTTTTCAAG
65 AATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTCGTAACAGTCTCCATTCTTTTGAAG
* * * * * * *
239092 ATTTGGAACCAAAAATAG-ATTCCTTTCAATAGGATAC-TAGACATTGA---------GTCGAAA
130 ATTGGGAAGCTAAAA-CGCATTCCCTTCATTAGGATACAT-GACATTGATGCTTTGGTGTCGCAA
* * * * * * *
239146 GAACAGTTTTTATTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-A
193 GAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACACA
* * * *
239210 GAATAGTCATACTAATCTCTATTCGTTTTAGGATTACGCACC-TTAAACATAGTCTTCTCATTAG
258 -AATACTCATACTAATCCCTATTCTTTTTAGGATTAGGCACCATT-AACATAGTCTTCTCATTAG
* * * *
239274 GATACACGATAATGATGCTTT-GATTTCAGAAGAAAGGCTTTCTTCC-CCTAA-TTTTGCAAAGT
321 GATACACGATATTGATGCTTTAG-TTTCACAAGAAAGGCTTT-TTCCACC-AATTTTTGTAAAGC
* * * * * *
239336 TTAAGTTCATACCTCAAATGAGACAAACATGGATTCAAGTAATGATCTTCATTCAATTTTGTGAT
383 CTAAGTTCGTGCCTCAAATGAGACAAACTTAGATTCTAGTAATGATCTTCATTC-ATTTTGTGAT
* * * *
239401 TAGGCACC-ATAAACACATTCT-CTTATTAGGATAAATGATATTGATTATTTTCTTTTGCATGTA
447 TAGGC-CCTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCCATGAA
** * * * *
239464 AATCTTTTCTTCACCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAAAAAAAGCATCGA
511 AATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT-AAGACAAGGATCGA
** * * ** * ** * * * *
239529 TTCTCGTAACATTTTCTTTTTTTTTCTAGATTAGGAAG-TCAAAACACATTCCTTTCACTAGGAT
575 TTCTTATAACAGTCTCCATTCTTTTGAAGATTGGGAAGCT-AAAACGCATTCCCTTCATTAGGAT
* *
239593 ACATGACATTGATGCTTTGGTG-CTGCAAGAAAAGCTTTTCTTTCTAC-CCTTTTTGATAGAATC
639 ACATGACATTGATGCTTTGGTGTC-GCAAGAAAAGCTTTTCTTTCCACTACTTTTT-ATAGAATC
* * * * * *
239656 AAAGTTTGTCTCTTTAAA-AAAACAAACATAAATAGTCATACTATTCCCCATTA-TTTTCAGGAT
702 AAAGTTTATCTC-TTAAATAAGACAAACTTGAATACTCATACTAAT-CCCATTATTTTTC-GGAT
* * * * *
239719 TTGGTACCATAAACATAGTCTTCTCGTTAGGATACACGATATTGATGCTTTGGTTTCGTAAGGAA
764 TAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAA
* * * * * *
239784 GGCTTCCATCCTACCAATTTTTGTAAAATC-ACGTTCGTGCCTCAAATGAGACAAACATGGATTC
829 GGCTTTCTTCCCACCAATTTTTGGAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTC
* *
239848 TAGTAATGATCTTCCA-TCACTTTATG--ATTAGGCGCTATAAACACATTCTCTTTATT
894 TAGTAATGATCTT-CATTCA-TTT-TGAAATTAGGCACTATAAACACATTCTCCTTATT
* * * * * * *
239904 AGAATAAATGATATTGATGATTTTCTTTTCCATGGATATATTTTCTTTGCCCTTTTTTCCCT-AA
1 AGGATAAATTATATTGATGATTTTCTTTTCCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAA
* * * * ** ** * * * * *
239968 ATCAGAGTTTATCCCTTAAAGATGACAACCATTAATTATTGTAATAGTCTCTATTGC-TTTCAAG
66 ATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTCGTAACAGTCTCCATT-CTTTTGAAG
** * * * * * * * *
240032 ATTTCGAACCAAAAACACATTCCCTTCAATAGGATACTTGACATTAATGCTTTGATATCGCAAGA
130 ATTGGGAAGCTAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * * * * **
240097 AAAGCTTTTTTTTTTCACCATTTTTGATGGAATCAAAG-TT-TCTTTTAAATAAGACAAACATGA
195 AAAGC-TTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACACAA
* * * ** * * *
240160 ATAGTCATATTAATCCCTATTCTTTTCAATATTAGGCACCATAAACATAGTCATCACATTAGGAT
259 ATACTCATACTAATCCCTATTCTTTTTAGGATTAGGCACCATTAACATAGTCTTCTCATTAGGAT
* * * * * * * * *
240225 ACA-TACTATTGTTGCTTTGGTTTCGCAAGAAAAGCTTTCTTCCCCCTACTTTTTGTATAGCATA
324 ACACGA-TATTGATGCTTTAGTTTCACAAGAAAGGCTTT-TTCCACC-AATTTTTGTAAAGCCTA
* * * *
240289 AGTTCGTGCCTCAAATGATACAAACATGGATTCAAGTAATGATCTTCATTCATTTTGTGATTAGG
386 AGTTCGTGCCTCAAATGAGACAAACTTAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG
** * *
240354 CATTATAAACACATTCTCCTCATTAGGATAAATTATATTGATGATTTTCTTTTGCAT-AGAAATC
451 CCCTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCCATGA-AAATC
* * ** * * * *
240418 TTTTATTTGCCTTATTTTCCTTGGAATAAAAGTTCATCCCTTAAATAGGATATGGATCGATTC-T
515 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTT
* * * * * *
240482 AGTAATAGTCTCCATTCCTTTT-AAGATTGGGAAGCCAATACACATTCCCTTAATTAAGATACAT
580 A-TAACAGTCTCCATT-CTTTTGAAGATTGGGAAGCTAAAACGCATTCCCTTCATTAGGATACAT
* *
240546 GACATTGATGCTTTGATGTCGCAAGAAAAGCTTTTCTTTCCACCA-TTTTTGATAGAATCAAAG-
643 GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTACTTTTT-ATAGAATCAAAGT
* * * ** *
240609 TTAGTCTCTTAAATAAGACAAACATGAATAGTCATACT-ATCCCTATTCTTTTAAGGATTAGGCG
707 TTA-TCTCTTAAATAAGACAAACTTGAATACTCATACTAATCCC-ATTATTTTTCGGATTAGGCA
* * * *
240673 CCATAAACGTTGTCTTCTCA-T----T--A-G-----GATGCTTTGGTTTCACAAGAAAAGCTTT
770 CCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT
* * * * *
240725 CTTCCTACCAATTTTTGTAAAGTCTAAGTTCTTACCTCAAATGAG-C---CACGGATTCTAGTAA
835 CTTCCCACCAATTTTTGGAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAA
** * *
240786 TGATCTTCATTCATTTTGGGATTAGGCACTATAAACATATTCTCCTCATT
900 TGATCTTCATTCATTTTGAAATTAGGCACTATAAACACATTCTCCTTATT
* * * *
240836 AGGATAAATTATATTGATGATTTTTTTTTTGCATGGAAATCTTTT-TATTGCCCTATTTTCCTAA
1 AGGATAAATTATATTGATGA-TTTTCTTTTCCATGAAAATCTTTTCT-TTGCCCTATTTTCCTTA
* * * * *
240900 AAATCAAAGCTCATCCCTTAAATAAGATAAGCATCGATTCTTGTAACAGTCTCCATTCTTTCCG-
64 AAATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTCGTAACAGTCTCCATTCTTT-TGA
* * * * * * *
240964 AGATTAGGAACCAAAAACACCTTCACC-TCATTAAGAGACATGACATTGATGCTTTGGTGTCGCA
128 AGATTGGGAAGCTAAAACGCATTC-CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCA
* * * * * *
241028 GGAAAAGCTTTGCTTTCCACTATTTTTGATGGAATCAAAGTTTATCTCTTAAATACGACAAACA-
192 AGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACAC
* * *
241092 ATAATAGTCATACTAATCCCTATTCATTTCAGGATTAGGCACC-TTAAACATAGTCTTCTCATTA
257 A-AATACTCATACTAATCCCTATTCTTTTTAGGATTAGGCACCATT-AACATAGTCTTCTCATTA
* * * * *
241156 GGATACACGATAATGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTAATTTTTGCAAAGC
320 GGATACACGATATTGATGCTTTAGTTTCACAAGAAAGGCTTT-TTCCACC-AATTTTTGTAAAGC
* * *
241221 CTTAGTTCGTACCTCAAATGAGACAAACAT-GAATTC-AGGTAATGATCTTCATTCAATTTTGTG
383 CTAAGTTCGTGCCTCAAATGAGACAAACTTAG-ATTCTA-GTAATGATCTTCATTC-ATTTTGTG
* * *
241284 ATTAGGCACC-ATAAACACATTTTCCTCATTAGGATAAATGATATTGATTATTTTCTTTTGCATG
445 ATTAGGC-CCTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCCATG
* ** ** * * *
241348 TAAATCTTTTCTTCACCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATTTGAAAAGCATTG
509 AAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGGATCG
**** * * * * * * *
241413 ATTCCCGCAATATTTTCCAATCTTTTCAAGATTGGGAAG-TCAAAACACATTCCCTTCAATAGGA
574 ATTCTTATAACAGTCTCCATTCTTTTGAAGATTGGGAAGCT-AAAACGCATTCCCTTCATTAGGA
* *** * * *
241477 TACATGATATTGATGCTTTGGTGTTATAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATAA
638 TACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTACTTTTTATAGAATCA
* ** * * *
241542 AAGTTTGTCTCTTAAATAAGACAAACAAGAATAGTCATACTAATCCCTATT-TGTTTTAGGGTTA
703 AAGTTTATCTCTTAAATAAGACAAACTTGAATACTCATACTAATCCC-ATTAT-TTTTCGGATTA
* ** * *
241606 GGCACCTTAAACATAGTCACCAT-ATTAGGATACACGATATT-ATTGCTTTGGTTTAGCAATAAA
766 GGCACCATAAACATAGTCTTC-TCATTAGGATACACGATATTGA-TGCTTTGGTTTCGCAAGAAA
* * * *
241669 GGCTTTCTTCCC-CTAATTTTTGTAAAGTTTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTC
829 GGCTTTCTTCCCACCAATTTTTGGAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTC
* * ** * *
241733 AAGTAATCATCTTCATTCATTTTGTGATTAGGCAGTATAAACACATTCTCCTCATT
894 TAGTAATGATCTTCATTCATTTTGAAATTAGGCACTATAAACACATTCTCCTTATT
* * * * * *
241789 AGGATAAATTATATTGATGATTTTGTTTTGCGT-AGAAATCTTTTATTTGCCTTATTTTCCTTTA
1 AGGATAAATTATATTGATGATTTTCTTTTCCATGA-AAATCTTTTCTTTGCCCTATTTTCCTTAA
* * * *
241853 AATC-AAGTTCATCCTTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTTTTTTTAAG
65 AATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTCGTAACAGTCTCCATTCTTTTGAAG
* * * ** *
241917 ATTGGGAAGCAAAAACACATTCCCTTCATTAGGATATATGACATT-ATTATTTTGGTGTCGTAAG
130 ATTGGGAAGCTAAAACGCATTCCCTTCATTAGGATACATGACATTGA-TGCTTTGGTGTCGCAAG
* * * * **
241981 AAAAGTTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTGC-TAAATAAGATGAACA-A
194 AAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCT-CTTAAATAAGACAAACACA
* * * * * *
242044 TAATAGTCATACTAATGCCC-ATTCTTTTAAGGATTGGGCGCCATAAACGTAGTCTTCTCATTAG
258 -AATACTCATACTAAT-CCCTATTCTTTTTAGGATTAGGCACCATTAACATAGTCTTCTCATTAG
* * * * *
242108 GATACACGATATTAATGCTTTGGTTTCACAAGAAAGGCTTTCTTCTTACCAATTTTTGTGAAGTC
321 GATACACGATATTGATGCTTTAGTTTCACAAGAAAGGCTTT-TTC-CACCAATTTTTGTAAAGCC
* * * * * * *
242173 TAAGTTCTTGCC-CTAAATGAGCCGAACATGGATTCTTGCAATGATCTTCATTCATTTTGTGATT
384 TAAGTTCGTGCCTC-AAATGAGACAAACTTAGATTCTAGTAATGATCTTCATTCATTTTGTGATT
** * *
242237 AGGTACTATAAACACATTCTCCTCATTAGGATAAATTATATTAATGATTTT-TTTAT--ATGAAA
448 AGGCCCTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTT-TCCATGAAA
* * * * *
242299 ATTTTTTCGTTGCCTTATTTTCCATT-AAATCAAAGTTCATCTCTTAAATAAGACAAGCATCGAT
512 ATCTTTTCTTTGCCCTATTTTCC-TTAAAATCAAAGTTCATCCCTTAAATAAGACAAGGATCGAT
* * * * * *
242363 TCTCATAACAGTCTCCATTCTTTCCG-AGATTGGGAA-CCAAAA-ACA---CC-TCATTAAGAGA
576 TCTTATAACAGTCTCCATTCTTT-TGAAGATTGGGAAGCTAAAACGCATTCCCTTCATTAGGATA
*
242421 CATGACGTTGATGCTTT-GTGTCGCAAGAAAAGCTTTT
640 CATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT
242458 TGAAAGCTTA
Statistics
Matches: 13248, Mismatches: 2011, Indels: 996
0.82 0.12 0.06
Matches are distributed among these distances:
873 1 0.00
874 174 0.01
875 74 0.01
876 19 0.00
877 126 0.01
878 123 0.01
879 5 0.00
880 6 0.00
882 1 0.00
883 1 0.00
884 1 0.00
888 7 0.00
891 2 0.00
894 11 0.00
895 2 0.00
896 4 0.00
897 10 0.00
898 23 0.00
899 10 0.00
900 5 0.00
901 11 0.00
902 10 0.00
903 8 0.00
904 7 0.00
905 3 0.00
908 1 0.00
909 1 0.00
910 3 0.00
911 87 0.01
913 91 0.01
916 1 0.00
917 1 0.00
919 2 0.00
920 5 0.00
921 8 0.00
922 9 0.00
923 9 0.00
924 5 0.00
925 10 0.00
926 24 0.00
927 9 0.00
928 4 0.00
929 2 0.00
930 13 0.00
931 5 0.00
932 69 0.01
933 64 0.00
934 110 0.01
935 226 0.02
936 276 0.02
937 53 0.00
938 144 0.01
939 323 0.02
940 151 0.01
941 284 0.02
942 278 0.02
943 256 0.02
944 321 0.02
945 693 0.05
946 181 0.01
947 336 0.03
948 1422 0.11
949 1837 0.14
950 2790 0.21
951 1899 0.14
952 511 0.04
953 90 0.01
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (949 bp):
AGGATAAATTATATTGATGATTTTCTTTTCCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAA
ATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTCGTAACAGTCTCCATTCTTTTGAAGA
TTGGGAAGCTAAAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAA
AAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACACAAAT
ACTCATACTAATCCCTATTCTTTTTAGGATTAGGCACCATTAACATAGTCTTCTCATTAGGATAC
ACGATATTGATGCTTTAGTTTCACAAGAAAGGCTTTTTCCACCAATTTTTGTAAAGCCTAAGTTC
GTGCCTCAAATGAGACAAACTTAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCCCTA
TAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTCCATGAAAATCTTTTCT
TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGGATCGATTCTTATAACA
GTCTCCATTCTTTTGAAGATTGGGAAGCTAAAACGCATTCCCTTCATTAGGATACATGACATTGA
TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTACTTTTTATAGAATCAAAGTTTATCTCTT
AAATAAGACAAACTTGAATACTCATACTAATCCCATTATTTTTCGGATTAGGCACCATAAACATA
GTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAA
TTTTTGGAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
CATTTTGAAATTAGGCACTATAAACACATTCTCCTTATT
Found at i:232165 original size:159 final size:159
Alignment explanation
Indices: 232002--242148 Score: 969
Period size: 159 Copynumber: 64.3 Consensus size: 159
231992 GCATTCCCTT
* *
232002 CATTAGGATACATGATATTGATGATTTGGTATCGTAAGAAAAGCTTTTCTTTCCACCATTTTTTA
1 CATTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTTA
* * * *
232067 TAGAATCAAAGTTTATCTCTTAAATAAGACAAATACAAATACTCAGACTAATCCCCATTCTTTTC
66 TAGAATCAAAGTTTATCTCTTAAATAAGACAAACACAGATTCTCAGACTAATCTCCATTCTTTT-
*
232132 AG-GATTAGGCACCATAAACATAGTCTTCA
130 AGTGATTAGGCACCATAAACACAGTCTTCA
* * * *
232161 CATTAGGATACACGATATTGATGCTTTGGTTTCGCAAG-AAAG-TCATT-TTTCTCACCAATTTT
1 CATTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAAGCT-TTTCTTTC-CACCATTTTT
* * * ** * * ** * *
232223 TGTA-AAGCCTAAGTTCGTGC-CTCCAAA-GAGACAAACATGGATTCTTCTA-A-TGATCTTCAT
64 TATAGAA-TCAAAGTTTAT-CTCT-TAAATAAGACAAACACAGATTC-TC-AGACTAATCTCCAT
* * * *
232283 TCATTTT-GTGATTAGGCACTATAAACACATTCTCCT
124 TC-TTTTAGTGATTAGGCACCATAAACACAGTCTTCA
* ** * * * *
232319 CATTAGGATA-ATGGTATTGATGATTTTTTTTC-CATGCAAATCTTTTCTTTGCC-CTATTTTCC
1 CATTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAAGCTTTTCTTT-CCACCATTTT--
** * * * * *
232381 TTA-A-AATCAAAGTCCATCCCCTAAATAAGACAAGCATC-GATTCTCATAAC-AGTCTCCATTC
63 TTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACA-CAGATTCTCA-GACTAATCTCCATTC
* * * *
232442 TTTTTGAGATT-GGGAGCCA-AAA-ACA-CCTTCA
126 TTTTAGTGATTAGGCA-CCATAAACACAGTCTTCA
* * * * *
232473 CTTCATTAGGAGACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCATTTT
1 ---CATTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
* * * * ** * *
232538 TAATAGAATCAATGTTTGTCTCTTAAATAAGACAAATA-AGAATAGTCATACCAATC-CCTATTC
63 TTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACACAG-ATTCTCAGACTAATCTCC-ATTC
* *
232601 ATTTTAG-GATTAGGCACCATTAACATAGTCTTCA
126 -TTTTAGTGATTAGGCACCATAAACACAGTCTTCA
* * * * * *
232635 AATTAGAATACACGATATTGATGCTTTGGTTTCGC-AGGAAAG-TCATT-TTTCCTACCAATTTT
1 CATTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAAGCT-TTTCTTTCC-ACC-ATTTT
* * ** ** * * * * * **
232697 TGCAAAGCCTC--AGTTCGTGC-CTTAAATGAGACAAACATAGATTCT-TGTAATTATCTTTATT
63 T-TATAGAATCAAAGTTTAT-CTCTTAAATAAGACAAACACAGATTCTCAG-ACTAATCTCCATT
* * *
232758 -TATTTTGTGATTAGGC-CCTATAAACACATTCTTCT
125 CT-TTTAGTGATTAGGCACC-ATAAACACAGTCTTCA
* * ** * * *
232793 CATTAGGATAAATTATATTGATGATTTTCTTTTC-CATGAAAATCTTTTCTTTGCC-CTATTTTT
1 CATTAGGATACATGATATTGATGA-TTTGGTTTCGCAAGAAAAGCTTTTCTTT-CCACCATTTTT
* * * * ** * * * *
232856 CT-TAAAATCAAAATTCATCCCTTAAATAAGACAAGGATC-GATTCT-TGTAATAGTCTCTATTC
64 -TATAGAATCAAAGTTTATCTCTTAAATAAGACAAACA-CAGATTCTCAG-ACTAATCTCCATTC
* * * * * *
232918 TTTT-GAAGATTGGGAAGC-TAAAACACATTCCTT-T
126 TTTTAG-TGATTAGGCACCAT-AAACACAGT-CTTCA
* * * * * * *
232952 CATTAAGATACATGACATAGATGCTTTGGAGTT-GCAAGAAAAGCTTATT-TTCCCACCACTTTT
1 CATTAGGATACATGATATTGATGATTTGG-TTTCGCAAGAAAAGCTT-TTCTTTCCACCATTTTT
* * * *
233015 TATAAAATCAAAGTTTATCTCTTAAATAAGACAAACACAGATACACATACTAATC-CTCATTCTT
64 TATAGAATCAAAGTTTATCTCTTAAATAAGACAAACACAGATTCTCAGACTAATCTC-CATTC-T
* *
233079 TTTAG-GATTAGGCACCATTAACATAGTCTTCA
127 TTTAGTGATTAGGCACCATAAACACAGTCTTCA
* * * * * * *
233111 CGTTACGATACATGATATTGATGCTTTGGTTTCACAAG-AAAGTCATTT-TTCCCACCAATTTTT
1 CATTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAAG-CTTTTCTTTCCACCATTTTTT
* ** * * * ** * * * * *
233174 CTAGAGCCTAAA-TTTGTGC-CTCAAATGAGACAAACATGGATTCT-TGTAATGATCTTCAATCA
65 ATAGAATC-AAAGTTTAT-CTCTTAAATAAGACAAACACAGATTCTCAG-ACTAATCTCCATTC-
* * * * * *
233236 TTTT-GTGATTAGCCACTATAAATACATTCTCCT
126 TTTTAGTGATTAGGCACCATAAACACAGTCTTCA
* * * ** *
233269 CATTAAGATAAATTATATTGATGACTTTCTTTTC-CATA-AAAATCTTTTC-TTCGC-CCTATTT
1 CATTAGGATACATGATATTGATGA-TTTGGTTTCGCA-AGAAAAGCTTTTCTTTC-CACC-ATTT
* * ** * * *
233330 TCCTTA-A-AATCAAAATTTATCCCTTAAATAAGACAAGTATC-TATTCT-TGTAAC-AGTCTCC
62 T--TTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACA-CAGATTCTCAG--ACTAATCTCC
* * * * * * *
233390 ATTCTTTTTGAGATTTGGAAGC-TAAAACGCATTCCCTT--
122 ATTCTTTTAGTGATTAGGCACCAT-AAACACAGT--CTTCA
* * * * * * *
233428 CATTAGGATATATGACATTCATAATTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACTATTTTTTA
1 CATTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTTA
* * * * *
233493 TAGAATCAAAGTTTATCTCTTAAATAAGATAAACACAAATACTCATACTAATCCCCATTCTTTTC
66 TAGAATCAAAGTTTATCTCTTAAATAAGACAAACACAGATTCTCAGACTAATCTCCATTCTTTT-
* *
233558 AG-GATTAGGCACCATGAACATAGTCTT-A
130 AGTGATTAGGCACCATAAACACAGTCTTCA
* * ** * * * * *
233586 CATTAGGATATACGATATTGATTCTTTGGTTTCACAAG-AAAGTCATTT-TTCCCAACAATTTTT
1 CATTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAAG-CTTTTCTTTCCACCATTTTTT
* * * * * * ** * * * *
233649 GTA-AAGCTTAAGTTTGTGC-CTCAAATGAGACAAACATGGATTCT-TGTAATGATCTTCATTCA
65 ATAGAATC-AAAGTTTAT-CTCTTAAATAAGACAAACACAGATTCTCAG-ACTAATCTCCATTC-
* *
233711 TTTT-GTGATTAGGCACCATAAACACATTC-TCTT
126 TTTTAGTGATTAGGCACCATAAACACAGTCTTC-A
** * * * *
233744 CATTAGGATA-ACTG-TATTGATGATTTTTTTTC-CACGTAAATCTTTTCTTTGC-CC-TGTTTT
1 CATTAGGATACA-TGATATTGATGATTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCAT-TTTT
* * ** * * * * *
233804 CCTA-AAAATTAAAACTCATCCCTTAAGTAAGACAAGCATC-GATTCTC-GTAAC-AATCTCCAC
64 --TATAGAATCAAAGTTTATCTCTTAAATAAGACAAACA-CAGATTCTCAG--ACTAATCTCCAT
* * * * * *
233865 TCTTTTCGAGATTGGGAACCA-AAAGCAC-CT-TTACTT
124 TCTTTTAGTGATTAGGCACCATAAA-CACAGTCTT-C-A
* * * * * * * * *
233901 CATTAGAAGACATGACATTGATGCTTTGGTATCACAAGAAAAGCATTTCTTTCCACCGTTTTTGA
1 CATTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTTA
* ** * * *
233966 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-AGAATAGTCATACTAATC-CCTACTCGTT
66 TAGAATCAAAGTTTATCTCTTAAATAAGACAAACACAG-ATTCTCAGACTAATCTCC-ATTCTTT
* * ** ** *
234029 CAG-GATTGGGCACTTTAAACATTGTCTTCT
129 TAGTGATTAGGCACCATAAACACAGTCTTCA
* * * * * *
234059 CGTTAGGATACACGATAATT-ATGCTTTGGTTTCGCAAGAAAGGC-TTTC-TTCC-CTTAATTTT
1 CATTAGGATACATGAT-ATTGATGATTTGGTTTCGCAAGAAAAGCTTTTCTTTCCAC-CATTTTT
** * ** * * ** * * * *
234120 TGCA-AAGTCTAAGTTCGTGC-CTCAAATGAGACAAACATGGATTC-AAGTAATGATCTTCATTC
64 TATAGAA-TCAAAGTTTAT-CTCTTAAATAAGACAAACACAGATTCTCAG-ACTAATCTCCATTC
* * * *
234182 AATTTT-GTGATTAAGCAGCATAAACACATTCTTCT
126 --TTTTAGTGATTAGGCACCATAAACACAGTCTTCA
* * * * * * * * * *
234217 CAATAGGATAAATGGTGTTGATGATTT-TTTTC-CATGCAAATCTTTTCTTTGC-CC-TGTTTTC
1 CATTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCAT-TTTTT
* * * * * * *
234278 CTAAAATCAAAGTTTATCCCTTAAATAAGACAAGCATC-GATTCTC-GTAAC-AGTCTACACTCT
65 ATAGAATCAAAGTTTATCTCTTAAATAAGACAAACA-CAGATTCTCAG--ACTAATCTCCATTCT
* * * *
234340 TTTGGAGATT-GGGAGCCA-AAA-ACA-CCTTCA
127 TTTAGTGATTAGGCA-CCATAAACACAGTCTTCA
* * * * * * *
234370 CTTTATTAGGAGACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCATCGTTTT
1 C---ATTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
** * * * ** *
234435 TGGTAGAATCAAAGTTTGTTTCCTAAATAAGACAAACA-AGAATAATCATACTAATC-CCTATTC
63 TTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACACAG-ATTCTCAGACTAATCTCC-ATTC
* * * * * *
234498 GTTTCAG-GATTAGG-ACCTTAAATATAGTTTTCT
126 -TTTTAGTGATTAGGCACCATAAACACAGTCTTCA
* * * * * *
234531 CATTAGG-TACACGATAATGATGCTTCGGGTTTCGCAAGAAAGGC-TTTC-TTCCACCCAATTTT
1 CATTAGGATACATGATATTGATGATT-TGGTTTCGCAAGAAAAGCTTTTCTTTCCA-CCATTTTT
** * ** ** * * ** * * * *
234593 TGCA-AAGTCTAAGTTCGTGGCTCAAATGAGACAAACATGGATTC-AAGTAATGATCTTCATTCA
64 TATAGAA-TCAAAGTTTATCTCTTAAATAAGACAAACACAGATTCTCAG-ACTAATCTCCATTC-
* * *
234656 ATTTT-GTGATTAGGCACCATAAGCACA-TTTTCCT
126 -TTTTAGTGATTAGGCACCATAAACACAGTCTT-CA
* ** * * * *
234690 CATTAGGATAAATGATATTGATGATTTTCTTTTGCATA-TAAATCTTTTC-TTCACCCCATTTTC
1 CATTAGGATACATGATATTGATGATTTGGTTTCGCA-AGAAAAGCTTTTCTTTC-CACCATTTT-
* * * * * *
234753 CTTA-A-AATTAAAGTTCATCCCTTAAATATGA-AAAGCATC-GATTCCTGCA-AC-ATTTTCCA
63 -TTATAGAATCAAAGTTTATCTCTTAAATAAGACAAA-CA-CAGATT-CT-CAGACTAATCTCCA
* * * * *
234812 TTCTTTTCA-AGATTGGGAAGTCA-AAACACATTCCCTTCA
123 TTCTTTT-AGTGATTAGGCA-CCATAAACACAGT--CTTCA
* * * **
234851 -A-TAGGATACATGATATTGA-CACTTTGGTGTT-GCAAAAAAAGCTTTTTTTTCCACTGTTTTT
1 CATTAGGATACATGATATTGATGA-TTTGGT-TTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* * * * * * * * *
234912 GATAGAATAAAAGTTTGTCTCTTAAATAAGATAAACA-TGA-ACAGTCACACTATTCCCCATTCA
64 TATAGAATCAAAGTTTATCTCTTAAATAAGACAAACACAGATTC--TCAGACTAATCTCCATTC-
** ** * *
234975 TTGAAG-GATTAGGTGCCATAAACATAGTCTTCT
126 TTTTAGTGATTAGGCACCATAAACACAGTCTTCA
* * * * * *
235008 CATTATGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGC-TTTCTTTCCACCAATTTTTG
1 CATTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTTT
** ** * * * * *
235072 A-A-AAGTC-AAGTTCGTGC-CTCGAATAAGACAAACATATATTCT-AGCAATGATCTTCATTCA
65 ATAGAA-TCAAAGTTTAT-CTCTTAAATAAGACAAACACAGATTCTCAG-ACTAATCTCCATTC-
* * * * *
235132 TTTT-GTGATTAGGCACTATGAACATATTCTTCT
126 TTTTAGTGATTAGGCACCATAAACACAGTCTTCA
* * * ** * * * *
235165 CATTAGGATAAATTATATTAATGATTTTCTTTTGCATCG-AAATCTTTTCTTT--AAC-TTGTTT
1 CATTAGGATACATGATATTGATGATTTGGTTTCGCA-AGAAAAGCTTTTCTTTCCACCATT-TTT
* * * * * * * * *
235226 TCCTTAAAATCAAAGTTCATC-CTTTAAATAAGACTATCATC-GATTCTCATAATAGTCTCTATT
64 T--ATAGAATCAAAGTTTATCTC-TTAAATAAGACAAACA-CAGATTCTCAGACTAATCTCCATT
* * * *
235289 CTTTTCA-AGATTAGGAACCAAAAACACATTCCCTT--
125 CTTTT-AGTGATTAGGCACCATAAACACAGT--CTTCA
* * ** * * * * *
235324 CAGTAGGATACTTGGCATTGATGCTTTACG-TTCGTAAGAAATA--TTTTTTTTACACCATTTTT
1 CATTAGGATACATGATATTGATGATTT-GGTTTCGCAAGAAA-AGCTTTTCTTTCCACCATTTTT
* * * * * * *
235386 GATAGAATCGAAGTTTGTCTCTTGAAA-AAGA-AAA-ACATGAATAGC-CATACTATTCCCCATT
64 TATAGAATCAAAGTTTATCTCTT-AAATAAGACAAACACA-G-AT-TCTCAGACTAATCTCCATT
* * * * * *
235447 CTTTTCA-AGATTAAGCACCGTAAACATAGTTTTCT
125 CTTTT-AGTGATTAGGCACCATAAACACAGTCTTCA
* * * ** * *
235482 CATAAAGATACACGATATTGATGCGTTGGTTTCGGAAGAAAGGC-TTTC-TTCC-CC-TTACTTT
1 CATTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATT--TTT
* * ** * * ** * * *
235543 TGTA-AAGTCTAAGTTCGTGTC-TCAA-AAGAACTAAACATGGATTCT-AGTAATGATCTTCATT
64 TATAGAA-TCAAAGTTTATCTCTTAAATAAG-AC-AAACACAGATTCTCAG-ACTAATCTCCATT
* * * * **
235604 CATTTT-GTAATTAGGCTCTATAAACACATTCTTTT
125 C-TTTTAGTGATTAGGCACCATAAACACAGTCTTCA
** * * ** * * * * *
235639 TGTTAGGATGA-ATGATACTAATGATTTTCTTTAGCATGGAAA-TTATTTCTTTTCC-CTATTTT
1 CATTAGGAT-ACATGATATTGATGATTTGGTTTCGCAAGAAAAGCT-TTTC-TTTCCACCATTTT
* * * * ** * * * * **
235701 CCTT-TA-AATCAAAGTTCATCCCTTAAATATGACAAGCATTGATTCTCATAATAGTATCCAAGC
63 --TTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACACAGATTCTCAGACTAATCTCCATTC
** * * ** *
235764 TTTTCAAAGATTAGGAACCAAAAACAC-GTTCCCCT
126 TTTT-AGTGATTAGGCACCATAAACACAG-TCTTCA
* * * * * * * * *
235799 CATTAAGATACATGACATTGATGCTTCGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTATTTGA
1 CATTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTTA
* * * * * *
235864 TAGAATCAAAGTTTCTCTCTTAAATAAGACAAACA-TGAATAGC-CATACTAATCCCCATCCTTA
66 TAGAATCAAAGTTTATCTCTTAAATAAGACAAACACAG-AT-TCTCAGACTAATCTCCATTCTT-
* * * *
235927 TCAG-GATGAGGCACCATAAACATA-TCTTCT
128 TTAGTGATTAGGCACCATAAACACAGTCTTCA
* * * * * * *
235957 CAATT-GGACACACGATATTGATGCTTTGATTTCACAAGAAAGGC-TTT-TTTCTCACCAATTTT
1 C-ATTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAAGCTTTTCTTTC-CACCATTTTT
* * * * * ** * * *
236019 TGTA-AAGTCTAGGTTCATGC-CTTAAATGAGACAAACATGGA-T-TCAGGTAATGATCTTCATT
64 TATAGAA-TCAAAGTTTAT-CTCTTAAATAAGACAAACACAGATTCTCA-G-ACTAATCTCCATT
* * * * * *
236080 CATTTT-GCGATTAGGCACTATAAATACATTCTCCT
125 C-TTTTAGTGATTAGGCACCATAAACACAGTCTTCA
* * * ** * * * * * *
236115 CATTAGGATAAATGATATAGAAGATTTTCTTTTGCATGGATATCTTTTCTTTGCC-CTATTTTCC
1 CATTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAAGCTTTTCTTT-CCACCATTTT--
** * * * * * * * *
236179 TTA-A-AATCAGGGTTCATCCCTTAAATATGACAACCATC-GATTCTTATAATAGTCTCCATTCT
63 TTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACA-CAGATTCTCAGACTAATCTCCATTCT
* * * * * ** *
236241 TTTCA-AGATTTGGAACCAAAAACACATTCCCCT
127 TTT-AGTGATTAGGCACCATAAACACAGTCTTCA
* * * * * * * * * * *
236274 TAATAGGATACTTGACATTGATGCTATGGTGTCACAAGAAAAGCTTTTCTTTTCACCGTTTTTGA
1 CATTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTTA
* * * ** * *
236339 TAGAATAAAAGTTTGTCTCTTAAATAAGACAAACA-TGAATAGTCATACTAATCCCCATTCTTTT
66 TAGAATCAAAGTTTATCTCTTAAATAAGACAAACACAG-ATTCTCAGACTAATCTCCATTC-TTT
* *
236403 TAGT-ATTAGGCACCATAAACATAATCTTCA
129 TAGTGATTAGGCACCATAAACACAGTCTTCA
* ** * * * * * *
236433 CAGTAGGATACACAATAATGACGCTTTGGTTTCGCAAGAAAGGC-TTTC-TTCCCCCAAATTTTT
1 CATTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTTT
* * ** * ** * * *
236496 GTA-AAGTCTAAGTTCGTGCATC--AAATGACG-CAAACATGGA--CTCAAGTAATGATCTTCAT
65 ATAGAA-TCAAAGTTTAT-C-TCTTAAAT-AAGACAAACACAGATTCTC-AG-ACTAATCTCCAT
* * *
236555 TCAATTT-GTGATTAGGCACTATAAACACA-TGCTTCT
124 TC-TTTTAGTGATTAGGCACCATAAACACAGT-CTTCA
* * * * ** * * ** * *
236591 CTTTAGGATAAATTATATTGAGGATTTTCTTTTGCATCG-AAATTTTTTATTT--GCC-TTCTTT
1 CATTAGGATACATGATATTGATGATTTGGTTTCGCA-AGAAAAGCTTTTCTTTCCACCATT-TTT
* * * * * * * *
236652 TCCTTGAAATCAAAGTTCATCCCTTAAATAAGA-TAGCATC-GATTCT-TGTAAC-AGTCTCCAT
64 T-ATAG-AATCAAAGTTTATCTCTTAAATAAGACAAACA-CAGATTCTCAG--ACTAATCTCCAT
* * * * * *
236713 ATTTTTTA-AGATTGGGAAGCCA-AAACACATTCATT-T
124 -TCTTTTAGTGATTAGGCA-CCATAAACACAGTC-TTCA
* * * * ** *
236749 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTACTGTTTTTGA
1 CATTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTTA
* * * ** * * *
236814 TAGAATCAAAGTTTGTTTCTTAAATAAGACAAACA-TGAATAGTGATACAAATC-CTCATTCTTT
66 TAGAATCAAAGTTTATCTCTTAAATAAGACAAACACAG-ATTCTCAGACTAATCTC-CATTC-TT
*
236877 TTAG-GATTAGGCACCATAAACATAGTCTTCA
128 TTAGTGATTAGGCACCATAAACACAGTCTTCA
* * * ** *
236908 CATTAGGATACACGATATTGAT-ACTTTGGTTTCGCAAGAAAGGCTTTT-TTCCCATTAATTTTT
1 CATTAGGATACATGATATTGATGA-TTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTT
* * ** * * ** * *
236971 GTA-AAGTCGAAGTTCT-TGC-CTCCAATGAGA-TAACATGGATTCT-AGTAATAATCTTCATTC
65 ATAGAA-TCAAAGTT-TAT-CTCTTAAATAAGACAAACACAGATTCTCAG-ACTAATCTCCATTC
* * *
237031 ATTTT-GTGATTAGGCACCATAAACACATTCTCCT
126 -TTTTAGTGATTAGGCACCATAAACACAGTCTTCA
* ** * * *
237065 CATTAGGATAAATGATATTGATGATTTTCTTTTGCATG-TAAGTCTTTTC-TTCGC-CCTATTTT
1 CATTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAAG-CTTTTCTTTC-CACC-ATTTT
* * * * * *
237127 CCTTA-A-AATTAGAGTTCATC-CTTTAAATATGA-AAAGCATC-GATTCTCTCA-AC-ATTTTC
63 --TTATAGAATCAAAGTTTATCTC-TTAAATAAGACAAA-CA-CAGA-T-TCTCAGACTAATCTC
* * * * *
237185 CATTCTTTTCA-AGATTGGGAAGTC-TAAACACATTCCCTT--
121 CATTCTTTT-AGTGATTAGGCA-CCATAAACACAGT--CTTCA
* * * * * * * * ** *
237224 CATTAGGATACATGACATTAATGCTTCGG-TGCTGTAA-AAAAGCTTTTGTTTTCACTGTTTTTG
1 CATTAGGATACATGATATTGATGATTTGGTTTC-GCAAGAAAAGCTTTTCTTTCCACCATTTTTT
* * ** * * *
237287 ATAGAATCAAAGTTTATCTCTTAAATAAAACAAACA-TGAATAGTCATACTATTCCCCATTCTTT
65 ATAGAATCAAAGTTTATCTCTTAAATAAGACAAACACAG-ATTCTCAGACTAATCTCCATTCTTT
* * * * *
237351 TCA-AGATTTGGCACCATAAACATACTCTTCC
129 T-AGTGATTAGGCACCATAAACACAGTCTTCA
* * * * * **
237382 CATTAGGATACACGATATTGA-CACTTTAGTTTCGCAAGAAAGGC-TTTC-ATCCTATTAATTTT
1 CATTAGGATACATGATATTGATGA-TTTGGTTTCGCAAGAAAAGCTTTTCTTTCC-A-CCATTTT
* ** * * ** * *
237444 TT-TA-AAGTCATA-TTCGTGC-CTCAAATGAGACAAACATGGATTCT-AGTAATTATCTTCC-T
63 TTATAGAA-TCAAAGTTTAT-CTCTTAAATAAGACAAACACAGATTCTCAG-ACTAATC-TCCAT
* * *
237503 TCCTTTT-GAGATT----ACTATAAACACATTCTT-A
124 T-CTTTTAGTGATTAGGCACCATAAACACAGTCTTCA
** * * * * * *
237534 TCATTAGGATA-ATTGATATTGATGATTTTCTTTTGCATGGATATCTTTTCTTTGCC-CTATTTT
1 -CATTAGGATACA-TGATATTGATGATTTGGTTTCGCAAGAAAAGCTTTTCTTT-CCACCATTTT
* * * * * * * * * *
237597 CCTTA-A-AATCAGAGTTCATCCCTCAAATATGATAACCATC-GGTTCTC-GTAATAGTCTCCAT
63 --TTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACA-CAGATTCTCAG-ACTAATCTCCAT
* * * * * * **
237658 TCTTTTCA-AGATTTGGAACCAAAAACAGATTCTTTT
124 TCTTTT-AGTGATTAGGCACCATAAACACAGTCTTCA
* * * * ** * * * *
237694 CAATAGGATA-ATAGACATTGATGCTTTGGTGTCAAAAGAACAGTTTTTCTTTTCACCGTTTTTT
1 CATTAGGATACAT-GATATTGATGATTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTT
* ** * *
237758 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-AGAATAGTCATACTAATCTCTATTCGTT
65 ATAGAATCAAAGTTTATCTCTTAAATAAGACAAACACAG-ATTCTCAGACTAATCTCCATTC-TT
* * * * *
237822 TCAG-GATTACGCACCTTAAACATAGTCTTCT
128 TTAGTGATTAGGCACCATAAACACAGTCTTCA
* * * * * * *
237853 CATTAGGATACACGATAATGATGCTTTGATTTCGGAAGAAAGGC-TTTC-TTCC-CCTAATTTTG
1 CATTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACC--ATTTTT
* * ** ** * * ** * * * *
237915 CA-A-AGTTTAAGTTCGTGC-CTCAAATGAGACAAACATGGATTC-AAGTAATGATCTTCATTCA
64 TATAGAATCAAAGTTTAT-CTCTTAAATAAGACAAACACAGATTCTCAG-ACTAATCTCCATTC-
* * *
237976 ATTTT-GTGATTAGGCACCATAAACACATTCTACT
126 -TTTTAGTGATTAGGCACCATAAACACAGTCTTCA
* * ** * * * *
238010 CATTAGGATAAATGATATTGATTATTTTCTTTTGCATGTAAATCTTTTC-TT-CACCCTATTTTC
1 CATTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAAGCTTTTCTTTCCA-CC-ATTTT-
* * * * * * *
238073 CTTA-A-AATCAAAGTTCATCCCTTAAATAAAAAAAAGCATC-GATTCTC-G--TAACATTTTCT
63 -TTATAGAATCAAAGTTTATCTCTTAAATAAGACAAA-CA-CAGATTCTCAGACT-A-ATCTCCA
* ** * * *
238132 TTTTTTTTCTAGATTAGGAAGTCA-AAACACATTCCTTTCA
123 TTCTTTTAGT-GATTAGGCA-CCATAAACACAGT-C-TTCA
* * * * * *
238172 C--TAGGATACATGACATTGATGCTTTGG-TGCTGCAAGAAAAGCTTTTCTTTCTACCCTTTTTG
1 CATTAGGATACATGATATTGATGATTTGGTTTC-GCAAGAAAAGCTTTTCTTTCCACCATTTTTT
* * * ** * * * *
238234 ATAGAATCAAAGTTTGTCTCTTTAAA-AAAACAAACA-TGAATAGTCATACTATTCCCCATTATT
65 ATAGAATCAAAGTTTATCTC-TTAAATAAGACAAACACAG-ATTCTCAGACTAATCTCCATTCTT
* * ** *
238297 TTCA-AGATTTGGCACCATAAACGTAGTCTTCT
128 TT-AGTGATTAGGCACCATAAACACAGTCTTCA
* * * * ** *
238329 CATTAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGC--TTCCATCCTACCAATTTTT
1 CATTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAAGCTTTTCTTTCC-ACCATTTTTT
* * * * * * ** * * **
238392 GTAAAATC-ACGTTCATGC-CTCAAATGAGACAAACATGGATTCT-AGTAATGATCTTGATTCAT
65 ATAGAATCAAAGTTTAT-CTCTTAAATAAGACAAACACAGATTCTCAG-ACTAATCTCCATTC-T
* * *
238454 TTT-GTGATTAGGCACCATAAACACATTCTCCT
127 TTTAGTGATTAGGCACCATAAACACAGTCTTCA
* * ** * * *
238486 CATTAGGATAAAAGATATTGATGATTTTCTTTTGCATG-TAAGTCTTTTC-TTCGC-CCTATTTT
1 CATTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAAG-CTTTTCTTTC-CACC-ATTTT
* * * * * ** * *
238548 CCTTA-A-AATTAGAGTTCATCCCTTAAATATGA-AAAGCATC-GATTCTC-GTAAGATTTTCCA
63 --TTATAGAATCAAAGTTTATCTCTTAAATAAGACAAA-CA-CAGATTCTCAG-ACTAATCTCCA
* * * * *
238608 TTCTTTTCA-AGATTGGGAAGTC-TAAACACATTCCCTT--
123 TTCTTTT-AGTGATTAGGCA-CCATAAACACAGT--CTTCA
* * * * * * * * * *
238645 CATTAGGATACATGACATTAATGCTTT-GATGCTGTAAAAAAAGCTTTTGTTTCCACTATTTTTG
1 CATTAGGATACATGATATTGATGATTTGGTTTC-GCAAGAAAAGCTTTTCTTTCCACCATTTTTT
* * * ** * * *
238709 ATAGAATCAAAGTTTATCTCTGAAATAAAACAAACA-TGAATAGTC-TACTATTCCCCATTCTTT
65 ATAGAATCAAAGTTTATCTCTTAAATAAGACAAACACAG-ATTCTCAGACTAATCTCCATTCTTT
* * *
238772 TCA-AGATTTGGCACCATAAACA-TGCTCTTC-
129 T-AGTGATTAGGCACCATAAACACAG-TCTTCA
* * * * * * **
238802 CATTAAGATACATGATATTGACGCTTTAGTTTCGCAAAAAAAGC-TTTC-ATCCTATTAATTTTT
1 CATTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAAGCTTTTCTTTCC-A-CCATTTTT
* ** * * ** * *
238865 T-TA-AAGTCATA-TTCGTGC-CTCAAATGAGACAAACATGGATTCT-AGTAATGATCTTCC-TT
64 TATAGAA-TCAAAGTTTAT-CTCTTAAATAAGACAAACACAGATTCTCAG-ACTAATC-TCCATT
* * * *
238924 CATTTT-GAGATTAGGCACTATAAACATATTCTT-A
125 C-TTTTAGTGATTAGGCACCATAAACACAGTCTTCA
** * ** * * * *
238958 TCATTAGGATA-ATTGATATTGATGATTTTCTTTTGCTTGGATATCTTTTCTTTGCC-CTATTTT
1 -CATTAGGATACA-TGATATTGATGATTTGGTTTCGCAAGAAAAGCTTTTCTTT-CCACCATTTT
* * * * * * * * *
239021 CCTTA-A-AATCAGAGTTCATCCCTTAAATATGAGAACCATAGATTCTC-GTAATAGTCTCCATT
63 --TTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACACAGATTCTCAG-ACTAATCTCCATT
* * * * * * *
239083 CTTTTCA-AGATTTGGAACCAAAAATAGATTCCTTTCA
125 CTTTT-AGTGATTAGGCACCATAAACACAGT-C-TTCA
* * * * * * * *
239120 -A-TAGGATAC----TA--GA-CA-TTGAG--TCGAAAGAACAGTTTTTATTTTCACCGTTTTTG
1 CATTAGGATACATGATATTGATGATTTG-GTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTT
* ** * *
239173 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-AGAATAGTCATACTAATCTCTATTCGTT
65 ATAGAATCAAAGTTTATCTCTTAAATAAGACAAACACAG-ATTCTCAGACTAATCTCCATTC-TT
* * * *
239237 TTAG-GATTACGCACCTTAAACATAGTCTTCT
128 TTAGTGATTAGGCACCATAAACACAGTCTTCA
* * * * *
239268 CATTAGGATACACGATAATGATGCTTTGATTTCAG-AAGAAAGGC-TTTC-TTCC-CCTAATTTT
1 CATTAGGATACATGATATTGATGATTTGGTTTC-GCAAGAAAAGCTTTTCTTTCCACC--ATTTT
** * ** * * * ** * * * *
239329 GCA-A-AGTTTAAGTTCATAC-CTCAAATGAGACAAACATGGATTC-AAGTAATGATCTTCATTC
63 TTATAGAATCAAAGTTTAT-CTCTTAAATAAGACAAACACAGATTCTCAG-ACTAATCTCCATTC
* *
239390 AATTTT-GTGATTAGGCACCATAAACACATTC-TCT
126 --TTTTAGTGATTAGGCACCATAAACACAGTCTTCA
* * * ** * * * *
239424 TATTAGGATAAATGATATTGATTATTTTCTTTTGCATGTAAATCTTTTC-TT-CACCCTATTTTT
1 CATTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAAGCTTTTCTTTCCA-CC-ATTTTT
* * * * * * * *
239487 CT-TAAAATCAAAGTTCATCCCTTAAATAAAAAAAAGCATC-GATTCTC-G--TAACATTTTCTT
64 -TATAGAATCAAAGTTTATCTCTTAAATAAGACAAA-CA-CAGATTCTCAGACT-A-ATCTCCAT
* ** * * *
239547 TTTTTTTCTAGATTAGGAAGTCA-AAACACATTCCTTTCA
124 TCTTTTAGT-GATTAGGCA-CCATAAACACAGT-C-TTCA
* * * * * *
239586 C--TAGGATACATGACATTGATGCTTTGG-TGCTGCAAGAAAAGCTTTTCTTTCTACCCTTTTTG
1 CATTAGGATACATGATATTGATGATTTGGTTTC-GCAAGAAAAGCTTTTCTTTCCACCATTTTTT
* * * * ** * * * *
239648 ATAGAATCAAAGTTTGTCTCTTTAAA-AAAACAAACATAAATAGTCATACTATTCCCCATTATTT
65 ATAGAATCAAAGTTTATCTC-TTAAATAAGACAAACACAGATTCTCAGACTAATCTCCATTCTTT
* * * *
239712 TCAG-GATTTGGTACCATAAACATAGTCTTCT
129 T-AGTGATTAGGCACCATAAACACAGTCTTCA
* * * * * * ** *
239743 CGTTAGGATACACGATATTGATGCTTTGGTTTCGTAAGGAAGGC--TTCCATCCTACCAATTTTT
1 CATTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAAGCTTTTCTTTCC-ACCATTTTTT
* * * ** * * ** * *
239806 GTAAAATC-ACGTTCGTGC-CTCAAATGAGACAAACATGGATTCT-AGTAATGATCTTCCA-TCA
65 ATAGAATCAAAGTTTAT-CTCTTAAATAAGACAAACACAGATTCTCAG-ACTAATC-TCCATTC-
* * * * *
239867 CTTTA-TGATTAGGCGCTATAAACACATTC-TCTT
126 TTTTAGTGATTAGGCACCATAAACACAGTCTTC-A
* * * ** * * * ** *
239900 TATTAGAATAAATGATATTGATGATTTTCTTTTC-CATGGATATATTTTCTTTGC-CC-TTTTTT
1 CATTAGGATACATGATATTGATGA-TTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTT
* * * * * * * * * * * *
239962 CCCTA-AATCAGAGTTTATCCCTTAAAGATGACAACCATTA-ATTAT-TGTAATAGTCTCTATTG
65 --ATAGAATCAAAGTTTATCTCTTAAATAAGACAAACA-CAGATTCTCAG-ACTAATCTCCATT-
* * ** * * *
240024 CTTTCA-AGATTTCGAACCAAAAACACATTCCCTTCA
125 CTTTTAGTGATTAGGCACCATAAACACAGT--CTTCA
* * * * * * * * *
240060 -A-TAGGATACTTGACATTAATGCTTTGATATCGCAAGAAAAGCTTTTTTTTTTCACCATTTTTG
1 CATTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAAGC-TTTTCTTTCCACCATTTTTT
* * * ** * *
240123 ATGGAATCAAAG-TT-TCTTTTAAATAAGACAAACA-TGAATAGTCATATTAATC-CCTATTCTT
65 ATAGAATCAAAGTTTATCTCTTAAATAAGACAAACACAG-ATTCTCAGACTAATCTCC-ATTCTT
* * *
240184 TTCAAT-ATTAGGCACCATAAACATAGTCATCA
128 TT-AGTGATTAGGCACCATAAACACAGTCTTCA
* * *
240216 CATTAGGATACAT-ACTATTGTTGCTTTGGTTTCGCAAGAAAAGC-TTTC-TTCCCCCTACTTTT
1 CATTAGGATACATGA-TATTGATGATTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACC-A-TTTT
* ** * * * ** * * * *
240278 TGTATAGCAT--AAGTTCGTGC-CTCAAATGATACAAACATGGATTC-AAGTAATGATCTTCATT
63 T-TATAGAATCAAAGTTTAT-CTCTTAAATAAGACAAACACAGATTCTCAG-ACTAATCTCCATT
** * * *
240339 CATTTT-GTGATTAGGCATTATAAACACATTCTCCT
125 C-TTTTAGTGATTAGGCACCATAAACACAGTCTTCA
* * ** * * * **
240374 CATTAGGATAAATTATATTGATGATTTTCTTTTGCATAG-AAATCTTTTATTTGCC-TTATTTTC
1 CATTAGGATACATGATATTGATGATTTGGTTTCGCA-AGAAAAGCTTTTCTTT-CCACCATTTT-
* * * * * * * *** * *
240437 CT-TGGAATAAAAGTTCATCCCTTAAATAGGATATGGATC-GATTCT-AGTAATAGTCTCCATTC
63 TTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACA-CAGATTCTCAG-ACTAATCTCCATT-
* * * * *
240499 CTTTTA-AGATTGGGAAGCCA-ATACACATTCCCTT-A
125 CTTTTAGTGATTAGGCA-CCATAAACACAGT--CTTCA
* * * * * *
240534 -ATTAAGATACATGACATTGATGCTTTGATGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGA
1 CATTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTTA
* ** *
240598 TAGAATCAAAG-TTAGTCTCTTAAATAAGACAAACA-TGAATAGTCATACT-ATC-CCTATTCTT
66 TAGAATCAAAGTTTA-TCTCTTAAATAAGACAAACACAG-ATTCTCAGACTAATCTCC-ATTCTT
*
240659 TTAAG-GATTAGGCGCCAT-AA-AC-GT-TGT--
128 TT-AGTGATTAGGCACCATAAACACAGTCT-TCA
* * * * *
240686 C-TT---CT-CAT--TA-GGATGCTTTGGTTTCACAAGAAAAGC-TTTC-TTCCTACCAATTTTT
1 CATTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAAGCTTTTCTTTCC-ACCATTTTTT
* * * * * * * *
240741 GTA-AAGTCTAAGTTCT-TAC-CTCAAATGAG-C---CACGGATTCT-AGTAATGATCTTCATTC
65 ATAGAA-TCAAAGTT-TAT-CTCTTAAATAAGACAAACACAGATTCTCAG-ACTAATCTCCATTC
* * * * * *
240798 ATTTT-GGGATTAGGCACTATAAACATATTCTCCT
126 -TTTTAGTGATTAGGCACCATAAACACAGTCTTCA
* * ** * * * * *
240832 CATTAGGATAAATTATATTGATGATTTTTTTTTTGCATGGAAATCTTTT-TATTGCC-CTATTTT
1 CATTAGGATACATGATATTGATGA-TTTGGTTTCGCAAGAAAAGCTTTTCT-TT-CCACCATTTT
* * * * * * * * *
240895 CCTA-AAAATCAAAGCTCATCCCTTAAATAAGATAAGCATC-GATTCT-TGTAAC-AGTCTCCAT
63 -TTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACA-CAGATTCTCAG--ACTAATCTCCAT
** * * * ** ** *
240956 TCTTTCCGAGATTAGGAACCAAAAACACCTTCACCT
124 TCTTTTAGTGATTAGGCACCATAAACACAGTCTTCA
* * * * * * * * *
240992 CATTAAGAGACATGACATTGATGCTTTGGTGTCGCAGGAAAAGCTTTGCTTTCCACTATTTTTGA
1 CATTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTTA
* * * ** *
241057 TGGAATCAAAGTTTATCTCTTAAATACGACAAACA-ATAATAGTCATACTAATC-CCTATTCATT
66 TAGAATCAAAGTTTATCTCTTAAATAAGACAAACACA-GATTCTCAGACTAATCTCC-ATTC-TT
* * * *
241120 TCAG-GATTAGGCACCTTAAACATAGTCTTCT
128 TTAGTGATTAGGCACCATAAACACAGTCTTCA
* * * * * *
241151 CATTAGGATACACGATAATGATGCTTTGGTTTCGCAAGAAAGGC-TTTC-TTCCCCCTAATTTTT
1 CATTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTTT
** * ** * * * * * * *
241214 GCA-AAGCCTTAGTTCGTA-C-CTCAAATGAGACAAACA-TGAAT-TCAGGTAATGATCTTCATT
65 ATAGAA-TCAAAGTT--TATCTCTTAAATAAGACAAACACAGATTCTCA-G-ACTAATCTCCATT
* *
241274 CAATTTT-GTGATTAGGCACCATAAACACA-TTTTCCT
125 C--TTTTAGTGATTAGGCACCATAAACACAGTCTT-CA
* * ** * * * *
241310 CATTAGGATAAATGATATTGATTATTTTCTTTTGCATGTAAATCTTTTC-TT-CACCCTATTTTC
1 CATTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAAGCTTTTCTTTCCA-CC-ATTTT-
* * ** ** * * * * *
241373 CTTA-A-AATCAAAGTTCATCCCTTAAATTTGA-AAAGCATTGATTC-CCGCAATATTTTCCAAT
63 -TTATAGAATCAAAGTTTATCTCTTAAATAAGACAAA-CACAGATTCTCAG-ACTAATCTCCATT
* * * * *
241434 CTTTTCA-AGATTGGGAAGTCA-AAACACATTCCCTTCA
125 CTTTT-AGTGATTAGGCA-CCATAAACACAGT--CTTCA
* **
241471 -A-TAGGATACATGATATTGATGCTTTGGTGTT-ATAAGAAAAGCTTTTCTTTCCACCATTTTTT
1 CATTAGGATACATGATATTGATGATTTGGT-TTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTT
* * ** * *
241533 ATAGAATAAAAGTTTGTCTCTTAAATAAGACAAACA-AGAATAGTCATACTAATC-CCTATTTGT
65 ATAGAATCAAAGTTTATCTCTTAAATAAGACAAACACAG-ATTCTCAGACTAATCTCC-A-TTCT
* * * **
241596 TTTAG-GGTTAGGCACCTTAAACATAGTCACCA
127 TTTAGTGATTAGGCACCATAAACACAGTCTTCA
* * * * * * *
241628 TATTAGGATACACGATATT-ATTGCTTTGGTTTAGCAATAAAGGC-TTTC-TTCC-CCTAATTTT
1 CATTAGGATACATGATATTGA-TGATTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTT
* ** ** * * * * * *
241689 TGTA-AAGTTTAAGTTCGTGC-CTCAAATGAGACAAACA-AGGATTC-AAGTAATCATCTTCATT
64 TATAGAA-TCAAAGTTTAT-CTCTTAAATAAGACAAACACA-GATTCTCAG-ACTAATCTCCATT
** * * *
241750 CATTTT-GTGATTAGGCAGTATAAACACATTCTCCT
125 C-TTTTAGTGATTAGGCACCATAAACACAGTCTTCA
* * * * * * * **
241785 CATTAGGATAAATTATATTGATGATTTTGTTTTGCGTAG-AAATCTTTTATTTGCC-TTATTTTC
1 CATTAGGATACATGATATTGATGATTTGGTTTCGC-AAGAAAAGCTTTTCTTT-CCACCATTTT-
* * *
241848 CTT-TA-AATC-AAGTTCATC-CTTTAAATAAGACAAGCATC-GATTCTC-GTAAC-AGTCTCCA
63 -TTATAGAATCAAAGTTTATCTC-TTAAATAAGACAAACA-CAGATTCTCAG--ACTAATCTCCA
* * * * * * *
241906 TTTTTTTTA-AGATTGGGAAGCAAAAACACATTCCCTT--
123 -TTCTTTTAGTGATTAGGCACCATAAACACAGT--CTTCA
* * * * * * * *
241943 CATTAGGATATATGACATT-ATTATTTTGGTGTCGTAAGAAAAGTTTTTCTTTCAACCATTTTTG
1 CATTAGGATACATGATATTGATGA-TTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTT
* ** * ** *
242007 ATAGAATCAAAGTTTGTCTGC-TAAATAAGATGAACA-ATAATAGTCATACTAATGC-CCATTCT
65 ATAGAATCAAAGTTTATCT-CTTAAATAAGACAAACACA-GATTCTCAGACTAAT-CTCCATTCT
* * ** *
242069 TTTAAG-GATTGGGCGCCATAAACGTAGTCTTCT
127 TTT-AGTGATTAGGCACCATAAACACAGTCTTCA
* * * * *
242102 CATTAGGATACACGATATTAATGCTTTGGTTTCACAAGAAAGGCTTT
1 CATTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAAGCTTT
242149 CTTCTTACCA
Statistics
Matches: 6972, Mismatches: 2177, Indels: 1678
0.64 0.20 0.15
Matches are distributed among these distances:
139 1 0.00
140 8 0.00
141 19 0.00
142 7 0.00
143 8 0.00
144 29 0.00
145 25 0.00
146 3 0.00
147 2 0.00
148 8 0.00
149 7 0.00
150 81 0.01
151 8 0.00
152 5 0.00
153 59 0.01
154 32 0.00
155 122 0.02
156 396 0.06
157 1287 0.18
158 1752 0.25
159 2343 0.34
160 636 0.09
161 109 0.02
162 24 0.00
163 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (159 bp):
CATTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTTA
TAGAATCAAAGTTTATCTCTTAAATAAGACAAACACAGATTCTCAGACTAATCTCCATTCTTTTA
GTGATTAGGCACCATAAACACAGTCTTCA
Found at i:233091 original size:476 final size:475
Alignment explanation
Indices: 231779--242457 Score: 11933
Period size: 476 Copynumber: 22.6 Consensus size: 475
231769 GTTTGTGCCT
* * * * * * *
231779 CAAA-ATGGATTCTTGTAATGATCTTCAATCATTTAGTGATCAGGCATTGTAAACACATTCTCCT
1 CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCT
** * * *
231843 TGTTAGGATAAATTATATTGACGATTTTCTTTTCCATGAAAATCTTTTCTTTGCCCTAATTTCCT
66 CATTAGGATAAATTATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCT
* ** * * ** * *
231908 TGAAATCAAAGGCCAT-TCTTCAAATAAGACAAGGATCGATTCTTTTAACAGTTTCCATTCTTTC
131 TAAAATCAAAGTTCATCCCTT-AAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTT
* * * * * * * * *
231972 CGAGATTTGGAGGCTAAAACGCATTCCCTTCATTAGGATACATGATATTGATGATTTGGTATCGT
195 CAAGATTGGGAAGCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGC
* * *
232037 AAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAATA
260 AAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * *
232102 CA-AATACTCAGACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTA
325 -AGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTA
*
232166 GGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGTCATTT-TTCTCACCAATTTTTGTAAAG
389 GGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTCTTC-CACCAATTTTTGTAAAG
*
232230 CCTAAGTTCGTGCCTCCAAA-GAGA
452 TCTAAGTTCGTGCCT-CAAATGAGA
** *
232254 CAAACATGGATTCTTCTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCT
1 CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCT
** * *
232319 CATTAGGAT-AATGGTATTGATGATTTT-TTTTCCATGCAAATCTTTTCTTTGCCCTATTTTCCT
66 CATTAGGATAAATTATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCT
* * * *
232382 TAAAATCAAAGTCCATCCCCTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTT
131 TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTC
* * * *
232447 GAGATTGGG-AGCCAAAAACACCTTCACTTCATTAGGAGACATGACATTGATGCTTTGGTGTCGC
196 AAGATTGGGAAG-CAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGC
* * * *
232511 AAGAAAAGCTTTTCTTTTCACCATTTTTAATAGAATCAATGTTTGTCTCTTAAATAAGACAAATA
260 AAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * **
232576 AGAATAGTCATACCAATCCCTATTCATTTT-AGGATTAGGCACCATTAACATAGTCTTCAAATTA
325 AGAATAGTCATACTAATCCCCATTC-TTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTA
* * * *
232640 GAATACACGATATTGATGCTTTGGTTTCGCAGGAAAGTCATTT-TTCCTACCAATTTTTGCAAAG
389 GGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTCTTCC-ACCAATTTTTGTAAAG
* * *
232704 CCTCAGTTCGTGCCTTAAATGAGA
452 TCTAAGTTCGTGCCTCAAATGAGA
* * * * * *
232728 CAAACATAGATTCTTGTAATTATCTTTATTTATTTTGTGATTAGGCCCTATAAACACATTCTTCT
1 CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCT
* *
232793 CATTAGGATAAATTATATTGATGATTTTCTTTTCCATGAAAATCTTTTCTTTGCCCTATTTTTCT
66 CATTAGGATAAATTATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCT
* * * * * *
232858 TAAAATCAAAATTCATCCCTTAAATAAGACAAGGATCGATTCTTGTAATAGTCTCTATTCTTTTG
131 TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTC
* * * * * *
232923 AAGATTGGGAAGCTAAAACACATTCCTTTCATTAAGATACATGACATAGATGCTTTGGAGTTGCA
196 AAGATTGGGAAGCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCA
* * *
232988 AGAAAAGCTTATT-TTCCCACCACTTTTT-ATAAAATCAAAGTTTATCTCTTAAATAAGACAAAC
261 AGAAAAGCTT-TTCTTTCCACCA-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
** * * * * *
233051 ACAG-ATACACATACTAATCCTCATTCTTTTTAGGATTAGGCACCATTAACATAGTCTTCACGTT
324 A-AGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATT
* * * * * *
233115 ACGATACATGATATTGATGCTTTGGTTTCACAAGAAAGTCATTT-TTCCCACCAATTTTTCTAGA
388 AGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTCTT-CCACCAATTTTTGTAAA
* * *
233179 GCCTAAATTTGTGCCTCAAATGAGA
451 GTCTAAGTTCGTGCCTCAAATGAGA
* * * * *
233204 CAAACATGGATTCTTGTAATGATCTTCAATCATTTTGTGATTAGCCACTATAAATACATTCTCCT
1 CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCT
* * * * *
233269 CATTAAGATAAATTATATTGATGACTTTCTTTTCCATAAAAATCTTTTCTTCGCCCTATTTTCCT
66 CATTAGGATAAATTATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCT
* * * * * *
233334 TAAAATCAAAATTTATCCCTTAAATAAGACAAGTATCTATTCTTGTAACAGTCTCCATTCTTTTT
131 TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTC
* * * * * * ** *
233399 GAGATTTGGAAGCTAAAACGCATTCCCTTCATTAGGATATATGACATTCATAATTTGGTGTCGTA
196 AAGATTGGGAAGCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCA
* * * *
233464 AGAAAAGCTTTTCTTTCCACTATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGATAAACAC
261 AGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-
* * *
233529 A-AATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATGAACATAGTCTT-ACATTAG
325 AGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAG
* * * * *
233592 GATATACGATATTGATTCTTTGGTTTCACAAGAAAGTCATTT-TTCCCAACAATTTTTGTAAAG-
390 GATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTCTT-CCACCAATTTTTGTAAAGT
*
233655 CTTAAGTTTGTGCCTCAAATGAGA
453 C-TAAGTTCGTGCCTCAAATGAGA
* *
233679 CAAACATGGATTCTTGTAATGATCTTCATTCATTTTGTGATTAGGCACCATAAACACATTC-TCT
1 CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTC-
* * * * * *
233743 TCATTAGGAT-AACTGTATTGATGATTTT-TTTTCCACGTAAATCTTTTCTTTGCCCTGTTTTCC
65 TCATTAGGATAAATTATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCC
* * ** * * *
233806 TAAAAATTAAAACTCATCCCTTAAGTAAGACAAGCATCGATTCTCGTAACAATCTCCACTCTTTT
130 TTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTT
* * * * ** * * * *
233871 CGAGATTGGGAACCAAAAGCACCTTTACTTCATTAGAAGACATGACATTGATGCTTTGGTATCAC
195 CAAGATTGGGAAGCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGC
* *
233936 AAGAAAAGCATTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
260 AAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * * ** * *
234001 AGAATAGTCATACTAATCCCTACTC-GTTCAGGATTGGGCACTTTAAACATTGTCTTCTCGTTAG
325 AGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAG
* *
234065 GATACACGATAATT-ATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCC-CTTAATTTTTGCAAAGT
390 GATACACGAT-ATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCAC-CAATTTTTGTAAAGT
234128 CTAAGTTCGTGCCTCAAATGAGA
453 CTAAGTTCGTGCCTCAAATGAGA
* *
234151 CAAACATGGATTCAAGTAATGATCTTCATTCAATTTTGTGATTAAGCAGC-ATAAACACATTCTT
1 CAAACATGGATTCTAGTAATGATCTTCATTC-ATTTTGTGATTAGGCA-CTATAAACACATTCTT
* ** * * * *
234215 CTCAATAGGATAAATGGTGTTGATGA-TTT-TTTTCCATGCAAATCTTTTCTTTGCCCTGTTTTC
64 CTCATTAGGATAAATTATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTC
* * *
234278 C-TAAAATCAAAGTTTATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTACACTCTTT
129 CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTT
** * * * *
234342 TGGAGATTGGG-AGCCAAAAACACCTTCACTTTATTAGGAGACATGACATTGATGCTTTGGTGTC
194 TCAAGATTGGGAAG-CAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC
* * * * * *
234406 GTAAGAAAAGCTTTTCTTTCCATCGTTTTTGGTAGAATCAAAGTTTGTTTCCTAAATAAGACAAA
258 GCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
* * * * * *
234471 CAAGAATAATCATACTAATCCCTATTCGTTTCAGGATTAGG-ACCTTAAATATAGTTTTCTCATT
323 CAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATT
* * *
234535 AGG-TACACGATAATGATGCTTCGGGTTTCGCAAGAAAGGCTTTCTTCCACCCAATTTTTGCAAA
388 AGGATACACGATATTGATGCTT-TGGTTTCGCAAGAAAGGCTTTCTTCCA-CCAATTTTTGTAAA
*
234599 GTCTAAGTTCGTGGCTCAAATGAGA
451 GTCTAAGTTCGTGCCTCAAATGAGA
* * *
234624 CAAACATGGATTCAAGTAATGATCTTCATTCAATTTTGTGATTAGGCACCATAAGCACATT-TTC
1 CAAACATGGATTCTAGTAATGATCTTCATTC-ATTTTGTGATTAGGCACTATAAACACATTCTT-
* ** *
234688 CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT-ATAAATCTTTTCTTCACCCCATTTT
64 CTCATTAGGATAAATTATATTGATGATTTTCTTTTGCATGA-AAATCTTTTCTTTGCCCTATTTT
* * * * * *
234752 CCTTAAAATTAAAGTTCATCCCTTAAATATGAAAAGCATCGATTC-CTGCAACATTTTCCATTCT
128 CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC-GTAACAGTCTCCATTCT
* * **
234816 TTTCAAGATTGGGAAGTC-AAAACACATTCCCTTCAATAGGATACATGATATTGACACTTTGGTG
192 TTTCAAGATTGGGAAG-CAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTG
* * * ** * *
234880 TTGCAAAAAAAGCTTTTTTTTCCACTGTTTTTGATAGAATAAAAGTTTGTCTCTTAAATAAGATA
256 TCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * * * * ** **
234945 AACATGAACAGTCACACTATTCCCCATTCATTGAAGGATTAGGTGCCATAAACATAGTCTTCTCA
321 AACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
* * *
235010 TTATGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTTCCACCAATTTTTGAAA
386 TTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTC-TTCCACCAATTTTTGTAA
* *
235075 AGTC-AAGTTCGTGCCTCGAATAAGA
450 AGTCTAAGTTCGTGCCTCAAATGAGA
** * * *
235100 CAAACATATATTCTAGCAATGATCTTCATTCATTTTGTGATTAGGCACTATGAACATATTCTTCT
1 CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCT
* ** * *
235165 CATTAGGATAAATTATATTAATGATTTTCTTTTGCATCG-AAATCTTTTCTTTAACTTGTTTTCC
66 CATTAGGATAAATTATATTGATGATTTTCTTTTGCAT-GAAAATCTTTTCTTTGCCCTATTTTCC
* * * * * *
235229 TTAAAATCAAAGTTCATCCTTTAAATAAGACTATCATCGATTCTCATAATAGTCTCTATTCTTTT
130 TTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTT
* * * * * *
235294 CAAGATTAGGAACCAAAAACACATTCCCTTCAGTAGGATACTTGGCATTGATGCTTTACGT-TCG
195 CAAGATTGGGAAGCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT-GGTGTCG
* * * * *
235358 TAAGAAATA--TTTTTTTTACACCATTTTTGATAGAATCGAAGTTTGTCTCTTGAAA-AAGAAAA
259 CAAGAAA-AGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTT-AAATAAGACAA
* * * * * * *
235420 ACATGAATAGCCATACTATTCCCCATTCTTTTCAAGATTAAGCACCGTAAACATAGTTTTCTCAT
322 ACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAT
* * * * * *
235485 AAAGATACACGATATTGATGCGTTGGTTTCGGAAGAAAGGCTTTCTTCC-CCTTACTTTTGTAAA
387 TAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCACC-AATTTTTGTAAA
* *
235549 GTCTAAGTTCGTGTCTCAAAAGA-A
451 GTCTAAGTTCGTGCCTCAAATGAGA
* * *
235573 CTAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTAATTAGGCTCTATAAACACATTCTTT
1 C-AAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTC
** * * * * * * *
235638 TTGTTAGGATGAATGATACTAATGATTTTCTTTAGCATGGAAAT-TATTTCTTTTCCCTATTTTC
65 TCATTAGGATAAATTATATTGATGATTTTCTTTTGCATGAAAATCT-TTTCTTTGCCCTATTTTC
* * * * * * **
235702 CTTTAAATCAAAGTTCATCCCTTAAATATGACAAGCATTGATTCTCATAATAGTATCCAAGCTTT
129 CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTT
* * * * * *
235767 TCAAAGATTAGGAACCAAAAACACGTTCCCCTCATTAAGATACATGACATTGATGCTTCGGTGTC
194 TC-AAGATTGGGAAGCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC
* * * *
235832 GCAAGAAAAGCTTTTCTTTCCAACGTATTTGATAGAATCAAAGTTTCTCTCTTAAATAAGACAAA
258 GCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
* * * * *
235897 CATGAATAGCCATACTAATCCCCATCCTTATCAGGATGAGGCACCATAAACATA-TCTTCTCAAT
323 CAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC-AT
* * * *
235961 T-GGACACACGATATTGATGCTTTGATTTCACAAGAAAGGCTTTTTTCTCACCAATTTTTGTAAA
387 TAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTC-CACCAATTTTTGTAAA
* * *
236025 GTCTAGGTTCATGCCTTAAATGAGA
451 GTCTAAGTTCGTGCCTCAAATGAGA
* * *
236050 CAAACATGGATTC-AGGTAATGATCTTCATTCATTTTGCGATTAGGCACTATAAATACATTCTCC
1 CAAACATGGATTCTA-GTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTC
* * * * *
236114 TCATTAGGATAAATGATATAGAAGATTTTCTTTTGCATGGATATCTTTTCTTTGCCCTATTTTCC
65 TCATTAGGATAAATTATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCC
** * * ** *
236179 TTAAAATCAGGGTTCATCCCTTAAATATGACAACCATCGATTCTTATAATAGTCTCCATTCTTTT
130 TTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTT
* * * * * *
236244 CAAGATTTGGAACCAAAAACACATTCCCCTT-AATAGGATACTTGACATTGATGCTATGGTGTCA
195 CAAGATTGGGAAGCAAAAACACATT-CCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCG
* * *
236308 CAAGAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATAAAAGTTTGTCTCTTAAATAAGACAAAC
259 CAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * * * * *
236373 ATGAATAGTCATACTAATCCCCATTCTTTTTAGTATTAGGCACCATAAACATAATCTTCACAGTA
324 AAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTA
* * * *
236438 GGATACACAATAATGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCAAATTTTTGTAAAGT
389 GGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCACC-AATTTTTGTAAAGT
*
236503 CTAAGTTCGTGCATCAAATGACG-
453 CTAAGTTCGTGCCTCAAATGA-GA
* * * *
236526 CAAACATGGACTCAAGTAATGATCTTCATTCAATTTGTGATTAGGCACTATAAACACATGCTTCT
1 CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCT
* * * * * *
236591 CTTTAGGATAAATTATATTGAGGATTTTCTTTTGCATCG-AAATTTTTTATTTGCCTTCTTTTCC
66 CATTAGGATAAATTATATTGATGATTTTCTTTTGCAT-GAAAATCTTTTCTTTGCCCTATTTTCC
* * *
236655 TTGAAATCAAAGTTCATCCCTTAAATAAGA-TAGCATCGATTCTTGTAACAGTCTCCATAT-TTT
130 TTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAT-TCTTT
* * **
236718 TTAAGATTGGGAAGCCAAAACACATTCATTTCATTAGGATACATGACATTGATGCTTTGGTGTCG
194 TCAAGATTGGGAAGCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCG
* ** *
236783 CAAGAAAAGCTTTTCTTTCTACTGTTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAGACAAAC
259 CAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * * * * *
236848 ATGAATAGTGATACAAATCCTCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCACATTA
324 AAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTA
* * **
236913 GGATACACGATATTGATACTTTGGTTTCGCAAGAAAGGCTTTTTTCCCATTAATTTTTGTAAAGT
389 GGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTT-CCACCAATTTTTGTAAAGT
* * *
236978 CGAAGTTCTTGCCTCCAATGAGA
453 CTAAGTTCGTGCCTCAAATGAGA
* * * *
237001 -TAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACCATAAACACATTCTCCT
1 CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCT
* * * *
237065 CATTAGGATAAATGATATTGATGATTTTCTTTTGCATGTAAGTCTTTTCTTCGCCCTATTTTCCT
66 CATTAGGATAAATTATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCT
* * * * * * *
237130 TAAAATTAGAGTTCATCCTTTAAATATGAAAAGCATCGATTCTC-TCAACATTTTCCATTCTTTT
131 TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGT-AACAGTCTCCATTCTTTT
* * *
237194 CAAGATTGGGAAGTC-TAAACACATTCCCTTCATTAGGATACATGACATTAATGCTTCGGTG-CT
195 CAAGATTGGGAAG-CAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC-
* * * ** * *
237257 GTAA-AAAAGCTTTTGTTTTCACTGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAAACAAA
258 GCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
* * * * * *
237321 CATGAATAGTCATACTATTCCCCATTCTTTTCAAGATTTGGCACCATAAACATACTCTTCCCATT
323 CAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATT
** * * ** *
237386 AGGATACACGATATTGACACTTTAGTTTCGCAAGAAAGGCTTTCATCCTATTAATTTTTTTAAAG
388 AGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCC-ACCAATTTTTGTAAAG
237451 TC-ATA-TTCGTGCCTCAAATGAGA
452 TCTA-AGTTCGTGCCTCAAATGAGA
* * * * *
237474 CAAACATGGATTCTAGTAATTATCTTCCTTCCTTTTGAGATT----ACTATAAACACATTCTTAT
1 CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCT
* *
237535 CATTAGGAT-AATTGATATTGATGATTTTCTTTTGCATGGATATCTTTTCTTTGCCCTATTTTCC
66 CATTAGGATAAATT-ATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCC
* * * * * * *
237599 TTAAAATCAGAGTTCATCCCTCAAATATGATAACCATCGGTTCTCGTAATAGTCTCCATTCTTTT
130 TTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTT
* * * ** * *
237664 CAAGATTTGGAACCAAAAACAGATTCTTTTCAATAGGATA-ATAGACATTGATGCTTTGGTGTCA
195 CAAGATTGGGAAGCAAAAACACATTCCCTTCATTAGGATACAT-GACATTGATGCTTTGGTGTCG
* * * * * *
237728 AAAGAACAGTTTTTCTTTTCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
259 CAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * * * *
237793 AAGAATAGTCATACTAATCTCTATTCGTTTCAGGATTACGCACCTTAAACATAGTCTTCTCATTA
324 AAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTA
* * * *
237858 GGATACACGATAATGATGCTTTGATTTCGGAAGAAAGGCTTTCTTCC-CCTAA-TTTTGCAAAGT
389 GGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCACC-AATTTTTGTAAAGT
*
237921 TTAAGTTCGTGCCTCAAATGAGA
453 CTAAGTTCGTGCCTCAAATGAGA
* * *
237944 CAAACATGGATTCAAGTAATGATCTTCATTCAATTTTGTGATTAGGCACCATAAACACATTCTAC
1 CAAACATGGATTCTAGTAATGATCTTCATTC-ATTTTGTGATTAGGCACTATAAACACATTCTTC
* * * **
238009 TCATTAGGATAAATGATATTGATTATTTTCTTTTGCATGTAAATCTTTTCTTCACCCTATTTTCC
65 TCATTAGGATAAATTATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCC
* * * * ** *
238074 TTAAAATCAAAGTTCATCCCTTAAATAAAAAAAAGCATCGATTCTCGTAACATTTTCTTTTTTTT
130 TTAAAATCAAAGTTCATCCCTTAAAT-AAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTT
* * * *
238139 TCTAGATTAGGAAGTC-AAAACACATTCCTTTCACTAGGATACATGACATTGATGCTTTGGTG-C
194 TCAAGATTGGGAAG-CAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC
* * *
238202 TGCAAGAAAAGCTTTTCTTTCTACCCTTTTTGATAGAATCAAAGTTTGTCTCTTTAAA-AAAACA
258 -GCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTC-TTAAATAAGACA
* * * * * *
238266 AACATGAATAGTCATACTATTCCCCATTATTTTCAAGATTTGGCACCATAAACGTAGTCTTCTCA
321 AACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
* * *
238331 TTAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTCCATCCTACCAATTTTTGTAA
386 TTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCC-ACCAATTTTTGTAA
* * *
238396 AATC-ACGTTCATGCCTCAAATGAGA
450 AGTCTAAGTTCGTGCCTCAAATGAGA
* * *
238421 CAAACATGGATTCTAGTAATGATCTTGATTCATTTTGTGATTAGGCACCATAAACACATTCTCCT
1 CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCT
** * * *
238486 CATTAGGATAAAAGATATTGATGATTTTCTTTTGCATGTAAGTCTTTTCTTCGCCCTATTTTCCT
66 CATTAGGATAAATTATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCT
* * * * * * *
238551 TAAAATTAGAGTTCATCCCTTAAATATGAAAAGCATCGATTCTCGTAAGATTTTCCATTCTTTTC
131 TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTC
* * *
238616 AAGATTGGGAAGTC-TAAACACATTCCCTTCATTAGGATACATGACATTAATGCTTTGATG-CTG
196 AAGATTGGGAAG-CAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC-G
* * * * * * *
238679 TAAAAAAAGCTTTTGTTTCCACTATTTTTGATAGAATCAAAGTTTATCTCTGAAATAAAACAAAC
259 CAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * * *
238744 ATGAATAGTC-TACTATTCCCCATTCTTTTCAAGATTTGGCACCATAAACAT-GCTCTTC-CATT
324 AAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG-TCTTCTCATT
* * * * * * * ** *
238806 AAGATACATGATATTGACGCTTTAGTTTCGCAAAAAAAGCTTTCATCCTATTAATTTTTTTAAAG
388 AGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCC-ACCAATTTTTGTAAAG
238871 TC-ATA-TTCGTGCCTCAAATGAGA
452 TCTA-AGTTCGTGCCTCAAATGAGA
* * * *
238894 CAAACATGGATTCTAGTAATGATCTTCCTTCATTTTGAGATTAGGCACTATAAACATATTCTTAT
1 CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCT
* * *
238959 CATTAGGAT-AATTGATATTGATGATTTTCTTTTGCTTGGATATCTTTTCTTTGCCCTATTTTCC
66 CATTAGGATAAATT-ATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCC
* * * * * *
239023 TTAAAATCAGAGTTCATCCCTTAAATATGAGAACCATAGATTCTCGTAATAGTCTCCATTCTTTT
130 TTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTT
* * * * * *
239088 CAAGATTTGGAACCAAAAATAGATTCCTTTCAATAGGATAC-TAGACATTGA---------GTCG
195 CAAGATTGGGAAGCAAAAACACATTCCCTTCATTAGGATACAT-GACATTGATGCTTTGGTGTCG
* * * * * *
239143 AAAGAACAGTTTTTATTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
259 CAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * * *
239208 AAGAATAGTCATACTAATCTCTATTCGTTTT-AGGATTACGCACCTTAAACATAGTCTTCTCATT
324 AAGAATAGTCATACTAATCCCCATTC-TTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATT
* * *
239272 AGGATACACGATAATGATGCTTTGATTTCAG-AAGAAAGGCTTTCTTCC-CCTAA-TTTTGCAAA
388 AGGATACACGATATTGATGCTTTGGTTTC-GCAAGAAAGGCTTTCTTCCACC-AATTTTTGTAAA
* * *
239334 GTTTAAGTTCATACCTCAAATGAGA
451 GTCTAAGTTCGTGCCTCAAATGAGA
* *
239359 CAAACATGGATTCAAGTAATGATCTTCATTCAATTTTGTGATTAGGCACCATAAACACATTC-TC
1 CAAACATGGATTCTAGTAATGATCTTCATTC-ATTTTGTGATTAGGCACTATAAACACATTCTTC
* * * * ** *
239423 TTATTAGGATAAATGATATTGATTATTTTCTTTTGCATGTAAATCTTTTCTTCACCCTATTTTTC
65 TCATTAGGATAAATTATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCC
* * * * ** *
239488 TTAAAATCAAAGTTCATCCCTTAAATAAAAAAAAGCATCGATTCTCGTAACATTTTCTTTTTTTT
130 TTAAAATCAAAGTTCATCCCTTAAAT-AAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTT
* * * *
239553 TCTAGATTAGGAAGTC-AAAACACATTCCTTTCACTAGGATACATGACATTGATGCTTTGGTG-C
194 TCAAGATTGGGAAG-CAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC
* * *
239616 TGCAAGAAAAGCTTTTCTTTCTACCCTTTTTGATAGAATCAAAGTTTGTCTCTTTAAA-AAAACA
258 -GCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTC-TTAAATAAGACA
* * * *
239680 AACATA-AATAGTCATACTATTCCCCATTATTTTCAGGATTTGGTACCATAAACATAGTCTTCTC
321 AACA-AGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC
* * * * *
239744 GTTAGGATACACGATATTGATGCTTTGGTTTCGTAAGGAAGGCTTCCATCCTACCAATTTTTGTA
385 ATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCC-ACCAATTTTTGTA
* *
239809 AAATC-ACGTTCGTGCCTCAAATGAGA
449 AAGTCTAAGTTCGTGCCTCAAATGAGA
* * *
239835 CAAACATGGATTCTAGTAATGATCTTCCA-TCACTTTATGATTAGGCGCTATAAACACATTC-TC
1 CAAACATGGATTCTAGTAATGATCTT-CATTCATTTTGTGATTAGGCACTATAAACACATTCTTC
* * * * * * * *
239898 TTTATTAGAATAAATGATATTGATGATTTTCTTTTCCATGGATATATTTTCTTTGCCCTTTTTTC
65 -TCATTAGGATAAATTATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTC
* * * * * * ** * * * *
239963 CCT-AAATCAGAGTTTATCCCTTAAAGATGACAACCATTAATTATTGTAATAGTCTCTATTGC-T
129 CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATT-CTT
** * * * * * *
240026 TTCAAGATTTCGAACCAAAAACACATTCCCTTCAATAGGATACTTGACATTAATGCTTTGATATC
193 TTCAAGATTGGGAAGCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC
* * * *
240091 GCAAGAAAAGCTTTTTTTTTTCACCATTTTTGATGGAATCAAAG-TT-TCTTTTAAATAAGACAA
258 GCAAGAAAAGC-TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* * * ** * *
240154 ACATGAATAGTCATATTAATCCCTATTCTTTTCAATATTAGGCACCATAAACATAGTCATCACAT
322 ACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAT
* * * * * *
240219 TAGGATACA-TACTATTGTTGCTTTGGTTTCGCAAGAAAAGCTTTCTTCCCCCTACTTTTTGTAT
387 TAGGATACACGA-TATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCACC-AATTTTTGTAA
*
240283 AG-CATAAGTTCGTGCCTCAAATGATA
450 AGTC-TAAGTTCGTGCCTCAAATGAGA
* * *
240309 CAAACATGGATTCAAGTAATGATCTTCATTCATTTTGTGATTAGGCATTATAAACACATTCTCCT
1 CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCT
* *
240374 CATTAGGATAAATTATATTGATGATTTTCTTTTGCAT-AGAAATCTTTTATTTGCCTTATTTTCC
66 CATTAGGATAAATTATATTGATGATTTTCTTTTGCATGA-AAATCTTTTCTTTGCCCTATTTTCC
** * * * * * * *
240438 TTGGAATAAAAGTTCATCCCTTAAATAGGATATGGATCGATTCTAGTAATAGTCTCCATTCCTTT
130 TTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATT-CTTT
* * * * *
240503 T-AAGATTGGGAAGCCAATACACATTCCCTTAATTAAGATACATGACATTGATGCTTTGATGTCG
194 TCAAGATTGGGAAGCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCG
*
240567 CAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTAGTCTCTTAAATAAGACAAAC
259 CAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * * * * *
240632 ATGAATAGTCATACT-ATCCCTATTCTTTTAAGGATTAGGCGCCATAAACGTTGTCTTCTCA-T-
324 AAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTA
* *
240694 ---T--A-G-----GATGCTTTGGTTTCACAAGAAAAGCTTTCTTCCTACCAATTTTTGTAAAGT
389 GGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCC-ACCAATTTTTGTAAAGT
* *
240748 CTAAGTTCTTACCTCAAATGAG-
453 CTAAGTTCGTGCCTCAAATGAGA
* * * *
240770 C---CACGGATTCTAGTAATGATCTTCATTCATTTTGGGATTAGGCACTATAAACATATTCTCCT
1 CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCT
* *
240832 CATTAGGATAAATTATATTGATGATTTTTTTTTTGCATGGAAATCTTTT-TATTGCCCTATTTTC
66 CATTAGGATAAATTATATTGATGA-TTTTCTTTTGCATGAAAATCTTTTCT-TTGCCCTATTTTC
* * * *
240896 CTAAAAATCAAAGCTCATCCCTTAAATAAGATAAGCATCGATTCTTGTAACAGTCTCCATTCTTT
129 CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTT
* * * * * * *
240961 CCGAGATTAGGAACCAAAAACACCTTCACC-TCATTAAGAGACATGACATTGATGCTTTGGTGTC
194 TCAAGATTGGGAAGCAAAAACACATTC-CCTTCATTAGGATACATGACATTGATGCTTTGGTGTC
* * * * * *
241025 GCAGGAAAAGCTTTGCTTTCCACTATTTTTGATGGAATCAAAGTTTATCTCTTAAATACGACAAA
258 GCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
* * * *
241090 CAATAATAGTCATACTAATCCCTATTCATTTCAGGATTAGGCACCTTAAACATAGTCTTCTCATT
323 CAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATT
* * *
241155 AGGATACACGATAATGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTAATTTTTGCAAAG
388 AGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCACC-AATTTTTGTAAAG
* * *
241220 CCTTAGTTCGTACCTCAAATGAGA
452 TCTAAGTTCGTGCCTCAAATGAGA
* *
241244 CAAACATGAATTC-AGGTAATGATCTTCATTCAATTTTGTGATTAGGCACCATAAACACATT-TT
1 CAAACATGGATTCTA-GTAATGATCTTCATTC-ATTTTGTGATTAGGCACTATAAACACATTCTT
* * * **
241307 CCTCATTAGGATAAATGATATTGATTATTTTCTTTTGCATGTAAATCTTTTCTTCACCCTATTTT
64 -CTCATTAGGATAAATTATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTT
** * * * * * * * *
241372 CCTTAAAATCAAAGTTCATCCCTTAAATTTGAAAAGCATTGATTCCCGCAATATTTTCCAATCTT
128 CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTT
* *
241437 TTCAAGATTGGGAAGTC-AAAACACATTCCCTTCAATAGGATACATGATATTGATGCTTTGGTGT
193 TTCAAGATTGGGAAG-CAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGT
*** * *
241501 TATAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAATAAAAGTTTGTCTCTTAAATAAGACAA
257 CGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* * * * **
241566 ACAAGAATAGTCATACTAATCCCTATT-TGTTTTAGGGTTAGGCACCTTAAACATAGTCACCAT-
322 ACAAGAATAGTCATACTAATCCCCATTCT-TTTCAGGATTAGGCACCATAAACATAGTCTTC-TC
* *
241629 ATTAGGATACACGATATT-ATTGCTTTGGTTTAGCAATAAAGGCTTTCTTCC-CCTAATTTTTGT
385 ATTAGGATACACGATATTGA-TGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCACC-AATTTTTGT
*
241692 AAAGTTTAAGTTCGTGCCTCAAATGAGA
448 AAAGTCTAAGTTCGTGCCTCAAATGAGA
* * * * *
241720 CAAACAAGGATTCAAGTAATCATCTTCATTCATTTTGTGATTAGGCAGTATAAACACATTCTCCT
1 CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCT
* * * *
241785 CATTAGGATAAATTATATTGATGATTTTGTTTTGCGT-AGAAATCTTTTATTTGCCTTATTTTCC
66 CATTAGGATAAATTATATTGATGATTTTCTTTTGCATGA-AAATCTTTTCTTTGCCCTATTTTCC
* * *
241849 TTTAAATC-AAGTTCATCCTTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTTTTTT
130 TTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTT
* * **
241913 TAAGATTGGGAAGCAAAAACACATTCCCTTCATTAGGATATATGACATT-ATTATTTTGGTGTCG
195 CAAGATTGGGAAGCAAAAACACATTCCCTTCATTAGGATACATGACATTGA-TGCTTTGGTGTCG
* * * **
241977 TAAGAAAAGTTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTGC-TAAATAAGATGAA
259 CAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCT-CTTAAATAAGACAAA
* * * * * *
242041 CAATAATAGTCATACTAATGCCCATTCTTTTAAGGATTGGGCGCCATAAACGTAGTCTTCTCATT
323 CAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATT
* * * *
242106 AGGATACACGATATTAATGCTTTGGTTTCACAAGAAAGGCTTTCTTCTTACCAATTTTTGTGAAG
388 AGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTC-CACCAATTTTTGTAAAG
* *
242171 TCTAAGTTCTTGCC-CTAAATGAGC
452 TCTAAGTTCGTGCCTC-AAATGAGA
* * * * *
242195 CGAACATGGATTCTTGCAATGATCTTCATTCATTTTGTGATTAGGTACTATAAACACATTCTCCT
1 CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCT
* * * *
242260 CATTAGGATAAATTATATTAATGATTTT-TTTAT--ATGAAAATTTTTTCGTTGCCTTATTTTCC
66 CATTAGGATAAATTATATTGATGATTTTCTTT-TGCATGAAAATCTTTTCTTTGCCCTATTTTCC
* *
242322 ATT-AAATCAAAGTTCATCTCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTT
130 -TTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTT
* * * * * *
242386 CCGAGATTGGGAA-CCAAAA-ACA---CC-TCATTAAGAGACATGACGTTGATGCTTT-GTGTCG
194 TCAAGATTGGGAAGCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCG
242444 CAAGAAAAGCTTTT
259 CAAGAAAAGCTTTT
242458 TGAAAGCTTA
Statistics
Matches: 8710, Mismatches: 1272, Indels: 452
0.83 0.12 0.04
Matches are distributed among these distances:
458 85 0.01
459 206 0.02
460 42 0.00
461 2 0.00
462 60 0.01
463 3 0.00
464 75 0.01
465 162 0.02
466 145 0.02
467 22 0.00
468 22 0.00
469 19 0.00
470 226 0.03
471 174 0.02
472 355 0.04
473 994 0.11
474 1706 0.20
475 1857 0.21
476 2004 0.23
477 465 0.05
478 86 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (475 bp):
CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCT
CATTAGGATAAATTATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCT
TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTC
AAGATTGGGAAGCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCA
AGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAA
GAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGG
ATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCACCAATTTTTGTAAAGTCTA
AGTTCGTGCCTCAAATGAGA
Found at i:243255 original size:33 final size:32
Alignment explanation
Indices: 243200--243264 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 32
243190 TTCGAAGCAA
243200 TGTATCGATACAATTCATCATGTATCAATACAG
1 TGTATCGATACAATTCA-CATGTATCAATACAG
*
243233 TGTATCGATACAATATGC-CATGTATCGATACA
1 TGTATCGATACAAT-T-CACATGTATCAATACA
243265 AACAATGGTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 27 0.93
34 1 0.03
35 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.32
Consensus pattern (32 bp):
TGTATCGATACAATTCACATGTATCAATACAG
Found at i:243319 original size:20 final size:20
Alignment explanation
Indices: 243294--243348 Score: 69
Period size: 19 Copynumber: 2.8 Consensus size: 20
243284 CTGCCAGTTT
**
243294 CATGTATCGATACAATTGTC
1 CATGTATCGATACAATTGAA
243314 CATGTATC-ATTACAA-TGAA
1 CATGTATCGA-TACAATTGAA
243333 CATGTATCGATACAAT
1 CATGTATCGATACAAT
243349 GTACCGATAC
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.36, C:0.18, G:0.13, T:0.33
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:243955 original size:20 final size:22
Alignment explanation
Indices: 243932--243975 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
243922 GGCTCTCGTT
*
243932 AAAAAATTT-T-CCCTTTGATA
1 AAAAAATTTCTCCCCCTTGATA
243952 AAAAAATTTCTCCCCCTTGATA
1 AAAAAATTTCTCCCCCTTGATA
243974 AA
1 AA
243976 TGGTTAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 9 0.43
21 1 0.05
22 11 0.52
ACGTcount: A:0.41, C:0.20, G:0.05, T:0.34
Consensus pattern (22 bp):
AAAAAATTTCTCCCCCTTGATA
Found at i:245157 original size:22 final size:22
Alignment explanation
Indices: 245111--245161 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
245101 TTTTGTTGAT
245111 GATTTT-AA-TGAAAAATGAAG
1 GATTTTGAAGTGAAAAATGAAG
*
245131 TATTTTGAAGTGAAAAAT-AAG
1 GATTTTGAAGTGAAAAATGAAG
245152 AGA-TTTGAAG
1 -GATTTTGAAG
245162 AAGATTTGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 5 0.19
21 12 0.46
22 9 0.35
ACGTcount: A:0.47, C:0.00, G:0.22, T:0.31
Consensus pattern (22 bp):
GATTTTGAAGTGAAAAATGAAG
Found at i:250127 original size:64 final size:65
Alignment explanation
Indices: 250024--250746 Score: 620
Period size: 64 Copynumber: 11.2 Consensus size: 65
250014 AAGGTACTAA
* * ** *
250024 CAACCTCTTTTCAAAGCCCACACAAGCCAATGGCAACCCTTCTCTAAAGCCCACACAAGTTGGTG
1 CAACCTCTTCT-AAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCCCACACAAGTCGGTG
250089 G
65 G
** * *
250090 CAACCTCTTC-AAAGCCCACACAAAACGGTGGCAACCC-TCT-AAAAGCCCACACAAGTCAGTGG
1 CAACCTCTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCCCACACAAGTCGGTGG
* * * * * * * *
250152 CAACATCTTCTCGATGCCCACACAAGCCAGTGGTAACCCTTCTTTAAAGCCCACACAAGTTGGTG
1 CAACCTCTTCT-AAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCCCACACAAGTCGGTG
250217 G
65 G
* * * ** * * *
250218 CAACCTCTTTTAAAGGCCACCCAAGTTTGCGGCAA-CC-TCTTCTAAAGCCCACAGAAGTTGGTG
1 CAACCTCTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTC-TCTAAAGCCCACACAAGTCGGTG
250281 G
65 G
* * * * * * *
250282 CAACATCTTCTAAAGCCCACAGAAGTTGGTGGCAACCTCTTCTC-AAAACCCATATAAGTCGATG
1 CAACCTCTTCTAAAGCCCACACAAGTCGGTGGCAACC-CTTCTCTAAAGCCCACACAAGTCGGTG
*
250346 C
65 G
* * * * * *
250347 CAACC-CTCTCTAAAGTCCACACAAGTTGGTGGCAACCTCTTCTC-AAAACCCATATAAGTCGAT
1 CAACCTCT-TCTAAAGCCCACACAAGTCGGTGGCAACC-CTTCTCTAAAGCCCACACAAGTCGGT
*
250410 GC
64 GG
* * *
250412 CAACC-CTTCTCTAAAGTCCACACAAGTTGGTGGCAA-CC-TCTTCTAAAGCCCACACAAGTCGA
1 CAACCTC-T-TCTAAAGCCCACACAAGTCGGTGGCAACCCTTC-TCTAAAGCCCACACAAGTCGG
250474 TGG
63 TGG
* *
250477 CAACCTCTTCTAAAGCCCACATAAGTCGGTGGCAACCCTGCTCTAAAGCCCACACAAG-CTGGTG
1 CAACCTCTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCCCACACAAGTC-GGTG
250541 G
65 G
* * * ** * * * *
250542 CAACC-C-TCTTAAATCCCATAGAAGTCAATAGCAACCTTTCTCT-GAGCCTAC-CAAAGTCGGT
1 CAACCTCTTC-TAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCCCACAC-AAGTCGGT
250603 GG
64 GG
** * **
250605 CAACC-CTTCTAAAGCCCATGCAAGTCGATGGCAACCCTTCTCTAAAGCTTACACAAGTCGGTGG
1 CAACCTCTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCCCACACAAGTCGGTGG
** * *
250669 CAACC-CTTCGCTAAAGCTTACACAAGTTGGTGGCAACCCTTCTTTAAAGCCCACACAAGTCGGT
1 CAACCTCTT--CTAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCCCACACAAGTCGGT
250733 GG
64 GG
250735 CAACC-CTTCTAA
1 CAACCTCTTCTAA
250747 GCCTAATGTC
Statistics
Matches: 550, Mismatches: 83, Indels: 50
0.81 0.12 0.07
Matches are distributed among these distances:
62 29 0.05
63 57 0.10
64 184 0.33
65 152 0.28
66 126 0.23
67 2 0.00
ACGTcount: A:0.30, C:0.32, G:0.17, T:0.21
Consensus pattern (65 bp):
CAACCTCTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCCCACACAAGTCGGTGG
Found at i:250243 original size:32 final size:32
Alignment explanation
Indices: 249990--250746 Score: 540
Period size: 33 Copynumber: 23.5 Consensus size: 32
249980 ATGCCTAGTA
* * * **
249990 GGCAATCTTTTCTAAAGCCCACACAAGGTACT
1 GGCAACCTCTTCTAAAGCCCACACAAGTTGGT
** * ****
250022 AACAACCTCTTTTCAAAGCCCACACAAGCCAAT
1 GGCAACCTCTTCT-AAAGCCCACACAAGTTGGT
250055 GGCAACC-CTTCTCTAAAGCCCACACAAGTTGGT
1 GGCAACCTC-T-TCTAAAGCCCACACAAGTTGGT
***
250088 GGCAACCTCTTC-AAAGCCCACACAAAACGGT
1 GGCAACCTCTTCTAAAGCCCACACAAGTTGGT
**
250119 GGCAACC-C-TCTAAAAGCCCACACAAGTCAGT
1 GGCAACCTCTTCT-AAAGCCCACACAAGTTGGT
* * * ***
250150 GGCAACATCTTCTCGATGCCCACACAAGCCAGT
1 GGCAACCTCTTCT-AAAGCCCACACAAGTTGGT
*
250183 GGTAACC-CTTCTTTAAAGCCCACACAAGTTGGT
1 GGCAACCTCTTC--TAAAGCCCACACAAGTTGGT
* * * * *
250216 GGCAACCTCTTTTAAAGGCCACCCAAGTTTGC
1 GGCAACCTCTTCTAAAGCCCACACAAGTTGGT
*
250248 GGCAACCTCTTCTAAAGCCCACAGAAGTTGGT
1 GGCAACCTCTTCTAAAGCCCACACAAGTTGGT
* *
250280 GGCAACATCTTCTAAAGCCCACAGAAGTTGGT
1 GGCAACCTCTTCTAAAGCCCACACAAGTTGGT
* * * * *
250312 GGCAACCTCTTCTCAAAACCCATATAAGTCGAT
1 GGCAACCTCTTCT-AAAGCCCACACAAGTTGGT
* *
250345 GCCAACC-CTCTCTAAAGTCCACACAAGTTGGT
1 GGCAACCTCT-TCTAAAGCCCACACAAGTTGGT
* * * * *
250377 GGCAACCTCTTCTCAAAACCCATATAAGTCGAT
1 GGCAACCTCTTCT-AAAGCCCACACAAGTTGGT
* *
250410 GCCAACC-CTTCTCTAAAGTCCACACAAGTTGGT
1 GGCAACCTC-T-TCTAAAGCCCACACAAGTTGGT
* *
250443 GGCAACCTCTTCTAAAGCCCACACAAGTCGAT
1 GGCAACCTCTTCTAAAGCCCACACAAGTTGGT
* *
250475 GGCAACCTCTTCTAAAGCCCACATAAGTCGGT
1 GGCAACCTCTTCTAAAGCCCACACAAGTTGGT
*
250507 GGCAACC-CTGCTCTAAAGCCCACACAAGCTGGT
1 GGCAACCTCT--TCTAAAGCCCACACAAGTTGGT
* * * ***
250540 GGCAACC-C-TCTTAAATCCCATAGAAGTCAAT
1 GGCAACCTCTTC-TAAAGCCCACACAAGTTGGT
* ** * *
250571 AGCAACCT-TTCTCTGAGCCTAC-CAAAGTCGGT
1 GGCAACCTCTTCT-AAAGCCCACAC-AAGTTGGT
** * *
250603 GGCAACC-CTTCTAAAGCCCATGCAAGTCGAT
1 GGCAACCTCTTCTAAAGCCCACACAAGTTGGT
** *
250634 GGCAACC-CTTCTCTAAAGCTTACACAAGTCGGT
1 GGCAACCTC-T-TCTAAAGCCCACACAAGTTGGT
**
250667 GGCAACC-CTTCGCTAAAGCTTACACAAGTTGGT
1 GGCAACCTCTT--CTAAAGCCCACACAAGTTGGT
*
250700 GGCAACC-CTTCTTTAAAGCCCACACAAGTCGGT
1 GGCAACCTCTTC--TAAAGCCCACACAAGTTGGT
250733 GGCAACC-CTTCTAA
1 GGCAACCTCTTCTAA
250747 GCCTAATGTC
Statistics
Matches: 579, Mismatches: 113, Indels: 67
0.76 0.15 0.09
Matches are distributed among these distances:
29 2 0.00
30 3 0.01
31 92 0.16
32 207 0.36
33 264 0.46
34 11 0.02
ACGTcount: A:0.30, C:0.32, G:0.17, T:0.21
Consensus pattern (32 bp):
GGCAACCTCTTCTAAAGCCCACACAAGTTGGT
Found at i:250373 original size:65 final size:64
Alignment explanation
Indices: 250024--250530 Score: 375
Period size: 65 Copynumber: 7.8 Consensus size: 64
250014 AAGGTACTAA
* **** * * * *
250024 CAACCTCTTTTCAAAGCCCACACAAGCCAATGGCAACC-CTTCTCTAAAGCCCACACAAGTTGGT
1 CAACCTCTTCT-AAAGCCCACACAAGTTGGTGGCAACCTC-T-TCTAAAACCCACATAAGTCGAT
*
250088 GG
63 GC
*** *
250090 CAACCTCTTC-AAAGCCCACACAAAACGGTGGCAACC-C-TCTAAAAGCCCACACAAGTC-AGTG
1 CAACCTCTTCTAAAGCCCACACAAGTTGGTGGCAACCTCTTCTAAAA-CCCACATAAGTCGA-TG
*
250151 G
64 C
* * * *** * * * * *
250152 CAACATCTTCTCGATGCCCACACAAGCCAGTGGTAACC-CTTCTTTAAAGCCCACACAAGTTGGT
1 CAACCTCTTCT-AAAGCCCACACAAGTTGGTGGCAACCTCTTC--TAAAACCCACATAAGTCGAT
*
250216 GG
63 GC
* * * * * * * * * *
250218 CAACCTCTTTTAAAGGCCACCCAAGTTTGCGGCAACCTCTTCTAAAGCCCACAGAAGTTGGTGG
1 CAACCTCTTCTAAAGCCCACACAAGTTGGTGGCAACCTCTTCTAAAACCCACATAAGTCGATGC
* * *
250282 CAACATCTTCTAAAGCCCACAGAAGTTGGTGGCAACCTCTTCTCAAAACCCATATAAGTCGATGC
1 CAACCTCTTCTAAAGCCCACACAAGTTGGTGGCAACCTCTTCT-AAAACCCACATAAGTCGATGC
* *
250347 CAACC-CTCTCTAAAGTCCACACAAGTTGGTGGCAACCTCTTCTCAAAACCCATATAAGTCGATG
1 CAACCTCT-TCTAAAGCCCACACAAGTTGGTGGCAACCTCTTCT-AAAACCCACATAAGTCGATG
250411 C
64 C
* * *
250412 CAACC-CTTCTCTAAAGTCCACACAAGTTGGTGGCAACCTCTTCTAAAGCCCACACAAGTCGATG
1 CAACCTC-T-TCTAAAGCCCACACAAGTTGGTGGCAACCTCTTCTAAAACCCACATAAGTCGATG
*
250476 G
64 C
* * *
250477 CAACCTCTTCTAAAGCCCACATAAGTCGGTGGCAACC-CTGCTCTAAAGCCCACA
1 CAACCTCTTCTAAAGCCCACACAAGTTGGTGGCAACCTCT--TCTAAAACCCACA
250531 CAAGCTGGTG
Statistics
Matches: 373, Mismatches: 53, Indels: 31
0.82 0.12 0.07
Matches are distributed among these distances:
61 6 0.02
62 23 0.06
63 2 0.01
64 129 0.35
65 135 0.36
66 74 0.20
67 4 0.01
ACGTcount: A:0.30, C:0.33, G:0.16, T:0.21
Consensus pattern (64 bp):
CAACCTCTTCTAAAGCCCACACAAGTTGGTGGCAACCTCTTCTAAAACCCACATAAGTCGATGC
Found at i:250533 original size:97 final size:95
Alignment explanation
Indices: 250036--250746 Score: 589
Period size: 97 Copynumber: 7.3 Consensus size: 95
250026 ACCTCTTTTC
* ** *
250036 AAAGCCCACACAAGCCAATGGCAACCCTTCTCTAAAGCCCACACAAGTTGGTGGCAACCTCTTC-
1 AAAGCCCACACAAGTCGGTGGCAACCC-T-TCTAAAGCCCACACAAGTCGGTGGCAACCTCTTCT
** *
250100 AAAGCCCACACAAAACGGTGGCAACCCTCT-A
64 AAAGCCCACACAAGTCGGTGGCAACCCTCTCT
* * * * * * *
250131 AAAGCCCACACAAGTCAGTGGCAACATCTTCTCGATGCCCACACAAGCCAGTGGTAACC-CTTCT
1 AAAGCCCACACAAGTCGGTGGCAAC-CCTTCT-AAAGCCCACACAAGTCGGTGGCAACCTCTTC-
* *
250195 TTAAAGCCCACACAAGTTGGTGGCAA-CCTCTTTT
63 -TAAAGCCCACACAAGTCGGTGGCAACCCTC-TCT
* * ** * * * *
250229 AAAGGCCACCCAAGTTTGCGGCAACCTCTTCTAAAGCCCACAGAAGTTGGTGGCAACATCTTCTA
1 AAAGCCCACACAAGTCGGTGGCAACC-CTTCTAAAGCCCACACAAGTCGGTGGCAACCTCTTCTA
* *
250294 AAGCCCACAGAAGTTGGTGGCAA-CCTCTTCT
65 AAGCCCACACAAGTCGGTGGCAACCCTC-TCT
* * * * * * *
250325 CAAAACCCATATAAGTCGATGCCAACCCTCTCTAAAGTCCACACAAGTTGGTGGCAACCTCTTCT
1 -AAAGCCCACACAAGTCGGTGGCAACCCT-TCTAAAGCCCACACAAGTCGGTGGCAACCTCTTCT
* * * * *
250390 CAAAACCCATATAAGTCGATGCCAACCCTTCTCT
64 -AAAGCCCACACAAGTCGGTGGCAACCC-TCTCT
* * *
250424 AAAGTCCACACAAGTTGGTGGCAACCTCTTCTAAAGCCCACACAAGTCGATGGCAACCTCTTCTA
1 AAAGCCCACACAAGTCGGTGGCAACC-CTTCTAAAGCCCACACAAGTCGGTGGCAACCTCTTCTA
*
250489 AAGCCCACATAAGTCGGTGGCAACCCTGCTCT
65 AAGCCCACACAAGTCGGTGGCAACCCT-CTCT
* * * ** *
250521 AAAGCCCACACAAG-CTGGTGGCAACCC-TCTTAAATCCCATAGAAGTCAATAGCAACCT-TTCT
1 AAAGCCCACACAAGTC-GGTGGCAACCCTTC-TAAAGCCCACACAAGTCGGTGGCAACCTCTTCT
** *
250583 CTGAGCCTAC-CAAAGTCGGTGGCAACCCT-TCT
64 -AAAGCCCACAC-AAGTCGGTGGCAACCCTCTCT
** * **
250615 AAAGCCCATGCAAGTCGATGGCAACCCTTCTCTAAAGCTTACACAAGTCGGTGGCAACC-CTTCG
1 AAAGCCCACACAAGTCGGTGGCAACCC-T-TCTAAAGCCCACACAAGTCGGTGGCAACCTCTT--
** * *
250679 CTAAAGCTTACACAAGTTGGTGGCAACCCTTCTTT
62 CTAAAGCCCACACAAGTCGGTGGCAACCC-TCTCT
250714 AAAGCCCACACAAGTCGGTGGCAACCCTTCTAA
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTAA
250747 GCCTAATGTC
Statistics
Matches: 494, Mismatches: 92, Indels: 58
0.77 0.14 0.09
Matches are distributed among these distances:
94 32 0.06
95 51 0.10
96 107 0.22
97 166 0.34
98 103 0.21
99 33 0.07
100 2 0.00
ACGTcount: A:0.30, C:0.32, G:0.17, T:0.21
Consensus pattern (95 bp):
AAAGCCCACACAAGTCGGTGGCAACCCTTCTAAAGCCCACACAAGTCGGTGGCAACCTCTTCTAA
AGCCCACACAAGTCGGTGGCAACCCTCTCT
Found at i:251107 original size:113 final size:113
Alignment explanation
Indices: 250967--251251 Score: 358
Period size: 113 Copynumber: 2.5 Consensus size: 113
250957 TCTTAAGCTT
* * * *
250967 AATATCACTGGCCTTGAATTAGCATATCGGCACCTTTATCATTCTTCTCATCTTCAAGTCTAATG
1 AATATCACTGGCCTAGAATAAGCATATCGGCACCTTTATCATTCTTCTCATCTTCAAGCCCAATG
*
251032 TCACTAGCCTTGAATCAGCACATTGGCACTTTTCTCATCTTTAAT-CCC
66 TCACTAGCCTTGAATCAGCACATTGGCACCTTTCTCATCTTT-ATGCCC
* * * * *
251080 AATATTACTGGCCTAGAATCAGCATATCGGTACCTTTATCATTCTTCTCAACTTCAAGCCCATTG
1 AATATCACTGGCCTAGAATAAGCATATCGGCACCTTTATCATTCTTCTCATCTTCAAGCCCAATG
* * *
251145 TCATTGGCCTTGAATCAGCACATTGGCACCTTTGTCATCTTTATGCCC
66 TCACTAGCCTTGAATCAGCACATTGGCACCTTTCTCATCTTTATGCCC
* * * * * * *
251193 AATATCACTAGCGTTA-AATAAGCACATTGGCACCTTTATCATTATTCTTATCCTCAAGC
1 AATATCACTGGC-CTAGAATAAGCATATCGGCACCTTTATCATTCTTCTCATCTTCAAGC
251252 TCGATATCGT
Statistics
Matches: 147, Mismatches: 23, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
112 2 0.01
113 143 0.97
114 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.12, T:0.35
Consensus pattern (113 bp):
AATATCACTGGCCTAGAATAAGCATATCGGCACCTTTATCATTCTTCTCATCTTCAAGCCCAATG
TCACTAGCCTTGAATCAGCACATTGGCACCTTTCTCATCTTTATGCCC
Found at i:251265 original size:113 final size:112
Alignment explanation
Indices: 250917--251290 Score: 342
Period size: 113 Copynumber: 3.3 Consensus size: 112
250907 TTAAGTCCAC
* ** * * * **
250917 TATCGCTGGCCTTGAATCAACTTACTAGCACCTTTGTCAT-TCTTAAGCTTAATATCACTGGCCT
1 TATCACTGGCCTTGAATCAACACATTGGCACCTTTGTCATCT-TTATGCCCAATATCACTGG-CT
* *
250981 TGAATTAGCATATCGGCACCTTTATCATTCTTCTCATCTTCAAG-TCTAA
64 TAAATAAGCATATCGGCACCTTTATCATTCTTCTCATCTTCAAGCTC-AA
* * * * * * *
251030 TGTCACTAGCCTTGAATCAGCACATTGGCACTTTTCTCATCTTTAAT-CCCAATATTACTGGCCT
1 TATCACTGGCCTTGAATCAACACATTGGCACCTTTGTCATCTTT-ATGCCCAATATCACTGGCTT
* * * * *
251094 AGAATCAGCATATCGGTACCTTTATCATTCTTCTCAACTTCAAGCCCAT
65 A-AATAAGCATATCGGCACCTTTATCATTCTTCTCATCTTCAAGCTCAA
* * * *
251143 TGTCATTGGCCTTGAATCAGCACATTGGCACCTTTGTCATCTTTATGCCCAATATCACTAGCGTT
1 TATCACTGGCCTTGAATCAACACATTGGCACCTTTGTCATCTTTATGCCCAATATCACTGGC-TT
* * * * * *
251208 AAATAAGCACATTGGCACCTTTATCATTATTCTTATCCTCAAGCTCGA
65 AAATAAGCATATCGGCACCTTTATCATTCTTCTCATCTTCAAGCTCAA
** *
251256 TATCGTTGG-CTGTGAATCAACATATTGGCACCTTT
1 TATCACTGGCCT-TGAATCAACACATTGGCACCTTT
251291 ATTATCATTC
Statistics
Matches: 211, Mismatches: 43, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
112 6 0.03
113 200 0.95
114 5 0.02
ACGTcount: A:0.25, C:0.26, G:0.13, T:0.36
Consensus pattern (112 bp):
TATCACTGGCCTTGAATCAACACATTGGCACCTTTGTCATCTTTATGCCCAATATCACTGGCTTA
AATAAGCATATCGGCACCTTTATCATTCTTCTCATCTTCAAGCTCAA
Found at i:253553 original size:599 final size:599
Alignment explanation
Indices: 252416--253579 Score: 2247
Period size: 599 Copynumber: 1.9 Consensus size: 599
252406 CAGCCACCCT
252416 ATTATGATCCTAAGCTTTGGGAAGCATTCATTTCCAGCCACCTTGTTCAGCTGCATAACGTTATG
1 ATTATGATCCTAAGCTTTGGGAAGCATTCATTTCCAGCCACCTTGTTCAGCTGCATAACGTTATG
252481 CTACTAGTAGCTTTTCCTGCAAATTAGAAGGGAGGAAATGACCAAAACACCACCATTTTGGCTAC
66 CTACTAGTAGCTTTTCCTGCAAATTAGAAGGGAGGAAATGACCAAAACACCACCATTTTGGCTAC
*
252546 AAAATTTTAGCTATAAATAAGCCAATCTGATTTCAACTGAGTACTTTTTCTTTCAGCCACATTTT
131 AAAATTTTAGCTATAAATAAGCCAATCTGATTTCAACTGAGTACTTTTTCTTTCAGCCACATTCT
*
252611 CTAGCCACATTATCAACCAAGTCTCAGCCAAAAACATCACACAAAAACACTCAAAGAAATCTATT
196 CTAGCCACATTATCAACCAAGTCTCAGCCAAAAACATCACACAAAAACACTCAAAGAAATCCATT
252676 CCTAGAGCTCTTCAACCTTCCCAAAAAGACTTCTCCAAACACCTCCTCCTTAGCCAATACGTCAC
261 CCTAGAGCTCTTCAACCTTCCCAAAAAGACTTCTCCAAACACCTCCTCCTTAGCCAATACGTCAC
* *
252741 TCTAATCCCCCTCTCTTCATACCAAAACCTAAATAACTCTTTTTATATCTTTTTTAGCTTGTTTA
326 TCTAATCCCCCTCTCTTCATACCAAAACCGAAATAACTCTTTTTATATCCTTTTTAGCTTGTTTA
* *
252806 TAACCCCAAAAAGGAAGTAAACAAGCCTGCATTGTTGTGCTAGTAAACAAATCAACCTAGCTTGC
391 TAACCCCAAAAAGGAAGTAAACAAGCCTACATTGTTGTGCCAGTAAACAAATCAACCTAGCTTGC
252871 TTGTGTTGGTATATATTTTGGACTTTGTCCTTTTATTTTCTGTTTATGTGTTCATCATCATTTAG
456 TTGTGTTGGTATATATTTTGGACTTTGTCCTTTTATTTTCTGTTTATGTGTTCATCATCATTTAG
252936 TGAGCTCATCATGCTTCCATGACCCTTTTAAGATCATCATGCATTTTAAGCACATAAATGACATG
521 TGAGCTCATCATGCTTCCATGACCCTTTTAAGATCATCATGCATTTTAAGCACATAAATGACATG
253001 AAAACATCAAAACG
586 AAAACATCAAAACG
253015 ATTATGATCCTAAGCTTTGGGAAGCATTCATTTCCAGCCACCTTGTTCAGCTGCATAACGTTATG
1 ATTATGATCCTAAGCTTTGGGAAGCATTCATTTCCAGCCACCTTGTTCAGCTGCATAACGTTATG
*
253080 CTACTAGTAGCTTTTCTTGCAAATTAGAAGGGAGGAAATGACCAAAACACCACCATTTTGGCTAC
66 CTACTAGTAGCTTTTCCTGCAAATTAGAAGGGAGGAAATGACCAAAACACCACCATTTTGGCTAC
253145 AAAATTTTAGCTATAAATAAGCCAATCTGATTTCAACTGAGTACTTTTTCTTTCAGCCACATTCT
131 AAAATTTTAGCTATAAATAAGCCAATCTGATTTCAACTGAGTACTTTTTCTTTCAGCCACATTCT
253210 CTAGCCACATTATCAACCAAGTCTCAGCCAAAAACATCACACAAAAACACTCAAAGAAATCCATT
196 CTAGCCACATTATCAACCAAGTCTCAGCCAAAAACATCACACAAAAACACTCAAAGAAATCCATT
253275 CCTAGAGCTCTTCAACCTTCCCAAAAAGACTTCTCCAAACACCTCCTCCTTAGCCAATACGTCAC
261 CCTAGAGCTCTTCAACCTTCCCAAAAAGACTTCTCCAAACACCTCCTCCTTAGCCAATACGTCAC
* *
253340 TCTAATCCCCCTCTCTTCATACTAGAACCGAAATAACTCTTTTTATATCCTTTTTAGCTTGTTTA
326 TCTAATCCCCCTCTCTTCATACCAAAACCGAAATAACTCTTTTTATATCCTTTTTAGCTTGTTTA
253405 TAACCCCAAAAAGGAAGTAAACAAGCCTACATTGTTGTGCCAGTAAACAAATCAACCTAGCTTGC
391 TAACCCCAAAAAGGAAGTAAACAAGCCTACATTGTTGTGCCAGTAAACAAATCAACCTAGCTTGC
253470 TTGTGTTGGTATATATTTTGGACTTTGTCCTTTTATTTTCTGTTTATGTGTTCATCATCATTTAG
456 TTGTGTTGGTATATATTTTGGACTTTGTCCTTTTATTTTCTGTTTATGTGTTCATCATCATTTAG
253535 TGAGCTCATCATGCTTCCATGACCCTTTTAAGATCATCATGCATT
521 TGAGCTCATCATGCTTCCATGACCCTTTTAAGATCATCATGCATT
253580 ATTATGGCCT
Statistics
Matches: 556, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
599 556 1.00
ACGTcount: A:0.31, C:0.24, G:0.12, T:0.32
Consensus pattern (599 bp):
ATTATGATCCTAAGCTTTGGGAAGCATTCATTTCCAGCCACCTTGTTCAGCTGCATAACGTTATG
CTACTAGTAGCTTTTCCTGCAAATTAGAAGGGAGGAAATGACCAAAACACCACCATTTTGGCTAC
AAAATTTTAGCTATAAATAAGCCAATCTGATTTCAACTGAGTACTTTTTCTTTCAGCCACATTCT
CTAGCCACATTATCAACCAAGTCTCAGCCAAAAACATCACACAAAAACACTCAAAGAAATCCATT
CCTAGAGCTCTTCAACCTTCCCAAAAAGACTTCTCCAAACACCTCCTCCTTAGCCAATACGTCAC
TCTAATCCCCCTCTCTTCATACCAAAACCGAAATAACTCTTTTTATATCCTTTTTAGCTTGTTTA
TAACCCCAAAAAGGAAGTAAACAAGCCTACATTGTTGTGCCAGTAAACAAATCAACCTAGCTTGC
TTGTGTTGGTATATATTTTGGACTTTGTCCTTTTATTTTCTGTTTATGTGTTCATCATCATTTAG
TGAGCTCATCATGCTTCCATGACCCTTTTAAGATCATCATGCATTTTAAGCACATAAATGACATG
AAAACATCAAAACG
Found at i:257465 original size:476 final size:476
Alignment explanation
Indices: 256151--260076 Score: 4162
Period size: 476 Copynumber: 8.2 Consensus size: 476
256141 ATATTGTGAC
* * * *
256151 AATAAGACAA-CATTGATTCCCGCAACAGTCTCCACTCTTTTCAAGATTGGGAACCAAAAACACA
1 AATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACA
* * * * * **
256215 AT-CCTTTCATTAGAATATATAACATTGATGCTTTGGTG-TCGCAAGAAAAGCCGTTCTTTCCAA
66 TTCCCTTT-ATTAGGATACATGACATTGATGCTTTGGTGAT-GCAAAAAAAGCTTTTCTTTCCAA
* * * * * * * *
256278 AGTTTTTGATAGAAACAAAGTTTGTTTTTTAAATTAGACAAACAAGAATACTTATACTAATCCCC
129 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCC
* *
256343 ATTCTTTTCACGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTT
194 ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTT
* * * * * *
256408 GGATTCACAAGAAAGGCATTTTTCCCACCAAGTTTTG-TAAAGTCAAAGTTCATACCTCAAATGA
259 GGATTCGCAAGAAAGGCTTTTTTCCCACCAA-TTTTGTTAAAGTCTAAGTTCGTGCCTCAAATAA
* *
256472 GTCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGGGATTAGGCACTATAAACACATTCTC
323 GACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTC
* * *
256537 CTTATTAGGATAAATGATATTTATGATTTTCTTTTGCA-TGAAAATCTTTTCTTTGCCATATTTA
388 CTTATTAGGATAAATGATATTGATGATTTTCTTTTGCATTG-AAATCTTTTCTTTGCCCTATTTT
* *
256601 CCTTAAAATCAAAGTTCATCCCTTC
452 CCTTAAAATCAAAGTCCATCCCTTA
* * * **
256626 AATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTTAGGATTGGGAACCAAAAATGCA
1 AATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACA
** ** ** *
256691 TTCCCTTTATTAGGATACATGATGTTGATGCTTTGGTGCCGCATGAAAAGCTTTT-TTTCTAAC-
66 TTCCCTTTATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTTCCAACG
* *
256754 -TTTTGATAAAATCAAAGTTTGTCTCTTAAA-AAGACAAACATGAAGAGTCATACTAATCCCCAT
131 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCAT
* * * *
256817 TCTTTT-TGAGATTAGCCACTATAAATATAGTCTTCTCATTAA-GATACATGATATTGATGCTTT
196 TCTTTTCAG-GATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACATGATATTGATGCTTT
* * * * * * *** * * * *
256880 GTATCCGTAAGAAACGCTTTCTACCCTTTAGTTATTG-TAAAGTCTAAGATCGTGCCTCAAGTGA
259 GGATTCGCAAGAAAGGCTTTTTTCCCACCAATT-TTGTTAAAGTCTAAGTTCGTGCCTCAAATAA
* * ** * * * **
256944 GTCGAATGTAGATTCTAGTAATGATCTTCATTCATTTTTTGATTAGGCACTATAGACTTATTCTC
323 GACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTC
* * *
257009 CTTGTTAGGATAAATGATATTGATTATTTTC-TTTGCATTGAATTCTTTTCTTTGCCCTATTTTC
388 CTTATTAGGATAAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTC
*
257073 C-TAAACATCAAAGTCCATCCTTTA
453 CTTAAA-ATCAAAGTCCATCCCTTA
* ** *
257097 AATAAAACAAGCATCGATTCTTATAACAGTCTCCATTCTTTTCGAGATTGGGAACCAAAAACACA
1 AATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACA
* * * *
257162 TTTCCTTTATTAGGAAACATAACATTGATGCTTTGGTGATGCAAAAAAAAACTTTTCTTTCCAAC
66 TTCCCTTTATTAGGATACATGACATTGATGCTTTGGTGATGC-AAAAAAAGCTTTTCTTTCCAAC
* * *
257227 GTTTTTGATAGAATCAACGTATGTCTCTTAAATAAGACAAACATGAATAGTCATACTAGTCCCCA
130 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCA
* * * * *
257292 TTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATTCTTGATATTGATGCTTTT
195 TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTG
* * * * *
257357 GATTCACAAAAAAGACTTTTTTCCCACCAATTTTGTTAAAATCTAAGTTCGTGTCTCAAATAAGA
260 GATTCGCAAGAAAGGCTTTTTTCCCACCAATTTTGTTAAAGTCTAAGTTCGTGCCTCAAATAAGA
* * * *
257422 TAAACA-GGCATTCTAGTTATGATCTTCATTCATTTTCTGATTAGGCACTATAAATACATTCTCC
325 CAAACATGG-ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC
** * * * *
257486 CCATTAGGTTAAATGATACTGATGATTTTCTTTTGCATGGAAATCATTTCTTTGCCCTATTTTCC
389 TTATTAGGATAAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCC
257551 TTAAAATCAAAGTCCA-CCCTTTA
454 TTAAAATCAAAGTCCATCCC-TTA
* * * *
257574 AATAAGACAAGCATTGATTCTCGTAATAGTCTTCATTCTTTTCAAGATTTGGAACCAAAAACACA
1 AATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACA
* * * * * * * * *
257639 TTCCCCTCATTTGAAAACATAACGTTGATGCTTTAGG-GATGC-AAAAAAGGTTTT-TTTTCATA
66 TTCCCTTTATTAGGATACATGACATTGATGCTTT-GGTGATGCAAAAAAAGCTTTTCTTTCCA-A
* * * * * * *
257701 -ATTTTTGATAGAATCAAAGTTTGTCTCCTAAATAATAAAAACATGAAAAGTCATACTAATCACT
129 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCC
* * * * *
257765 ATTCTTTTTAGGATTAGGCACCATAAACGTA-TTTTCTCATAAGGATACACGATATTGACGCTTT
194 ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTT
** * * * *
257829 GG-TCTCGCAAGAAAGGCTTACTTCCCTCCAATTTTTTTAAAGTTTAAGTTCATGCCTCAAATAA
259 GGAT-TCGCAAGAAAGGCTTTTTTCCCACCAATTTTGTTAAAGTCTAAGTTCGTGCCTCAAATAA
*** * * * *
257893 G-CAAAACACAAATTCAAGTAATGATCTTCATTCATTTTGCGATTAGGCACTATAAGCTCATTCT
323 GAC-AAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
* * * * ** ** *
257957 CCTCATTAGGATAAATGATATCGATGATTTTCGTTTACATAAAAATAATTTCTTTCCCCTATTTT
387 CCTTATTAGGATAAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTT
* *
258022 CCTTAAAATCAAAGTTCACCCCTTA
452 CCTTAAAATCAAAGTCCATCCCTTA
* * * **
258047 AATAAAACAAGCTTCGATTCTCGTAATAGTCTCCAAGCTTTTCAAAGATTGGGAACCAAAAACAC
1 AATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTC-AAGATTGGGAACCAAAAACAC
* * * * *
258112 ATTGCCC-TCAATAGGATACATGACATTGATGCATTGGTGATGCAAAAAAA-CTGTTCTCTCC-A
65 ATT-CCCTTTATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTTCCAA
* * * *
258174 C-TGTTTTGATAGAATCAAA-TTTGGTCTCTTAAA-AACGATAAACATAAATACTCATACTAATT
129 CGT-TTTTGATAGAATCAAAGTTT-GTCTCTTAAATAA-GACAAACATGAATAGTCATACTAATC
* * * * *
258236 CCCATTTTTTTTCAGGATTAGACACCATAAACATAGTCTTCTCATTAGAATATATGATATTGATG
191 CCCA-TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATG
* * *
258301 CTTTGGATTCGCAAGAAAGGCTTTTTTCCCACCAATTTTCG-TAAAGTCGAAGTTCGAGCCTTAA
255 CTTTGGATTCGCAAGAAAGGCTTTTTTCCCACCAATTTT-GTTAAAGTCTAAGTTCGTGCCTCAA
* * * *
258365 ATAAGACAAACATGGATTCTAATAATGATCGTCATTCATTTTGTGATTAGGCATTACAAACACAT
319 ATAAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
* * * *
258430 TCTCCTTGTTAGGATAAATCG-TATTAATGATTTTCTTTTGCATGGAAGTCTTTTCTTTGCCCTA
384 TCTCCTTATTAGGATAAAT-GATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTA
* **
258494 TTTTCCATAAAAAAAAAGTCCATCCCTTA
448 TTTTCCTTAAAATCAAAGTCCATCCCTTA
* * *
258523 AATAAGACAATCATCAATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGAAACCAAAAACACA
1 AATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACA
* * * * *
258588 TT-CCTTTCATTCGGAAACATAACATTGATGCTTTGGTGACGCAAAAACAATTTTTTTTCAACTT
66 TTCCCTTT-ATTAGGATACATGACATTGATGCTTTGGTGATGC-AAAA-AA---------AGCTT
* * * * *
258652 TTTTATAGAATCAAAGTTTGTCTCTGTTTTTTTTATAGAATCAAAGTTTGCCTTTTAAATAAGAC
119 TTCT-T----TCCAA--------C-G--TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* * * * *
258717 AAACATGAAAAGTCATACTAATCACTATTCTTTTCAGGATTAGGCACTATAAACATAATCTTCTC
168 AAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC
* * ** *
258782 AAAAAGATACATGATATTGATGCTTTGGATTCTTAAGAAAGCCTTTTTTTCCCACCAATTTT-TG
233 ATAAGGATACATGATATTGATGCTTTGGATTCGCAAGAAAGGC-TTTTTTCCCACCAATTTTGT-
* * * * * *
258846 TAAAGTCTAAGTTTGTGTCTCATATGAGACAAACATTGATTTTAGTAATGATCTTCATTCATTTT
296 TAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTT
* * * * **
258911 GTGATTAGGGACTATAAACACATTCTCCTTATTAAGATAAAAGATATTGATGGTTTTCTTTTAAA
361 GTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGATGATTTTCTTTTGCA
* * * * * *** *
258976 TGGTAATATTTTTTTTGCCCTATTTTCCTTAAAATCAAATTTTTTACCTTA
426 TTGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTCCATCCCTTA
** * * * *
259027 TGTAAGACAAGCATCGTTTCTTGTAACGGTCTCCATTCCTTTCAAGATTGGGAACCAAAAACACA
1 AATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACA
* * * * * * * *
259092 TTCCCTTCATTAGGATACATGACATTGACGCTTTGGGGTTGCAAGAAATGCTTTTCGTTCCACCG
66 TTCCCTTTATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTTCCAACG
* * * * * * ***
259157 TTTTTGATAGAATCAATGCTTGCCTTTTAAATAAGACAAATATGAATACTCATACTAATCGAAAT
131 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCAT
* * * *
259222 TCTTTTCAGGATTAGCCACCATAAACATAGTCTTCTCATAAGGATTCACGATATTGACGCTTTGG
196 TCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGG
* * * *
259287 TTTTGGAAGAAAGGCTTTCTTCCC-CGC-ATTTT-TTGCAAAGTCTAAGTTCGTGCCTCAAATTA
261 ATTCGCAAGAAAGGCTTTTTTCCCAC-CAATTTTGTT--AAAGTCTAAGTTCGTGCCTCAAA-TA
*
259349 A-ACAAACATGGATTCTAGTAACGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
322 AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
* * *
259413 CCTCATTAGGATAAAAGATATTGATGATTTTCTTTTGCATTGAAATCTTTTATTTGCCCTATTTT
387 CCTTATTAGGATAAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTT
*
259478 CCTTAAAATCAAAG-CTCATCCCTTG
452 CCTTAAAATCAAAGTC-CATCCCTTA
* * * ** *
259503 AATAAGACAAGCATCAATTCTCGTAACAGTCTCTATTGTTTTCAACTTTGGGAACCAAAAACGCA
1 AATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACA
* * * * * * * *
259568 -TCCCTTCATTAGTATACATGACATTTATGATTTGG-GGTCGCAAGAAATGCTTTTCTTTCCACC
66 TTCCCTTTATTAGGATACATGACATTGATGCTTTGGTGAT-GCAAAAAAAGCTTTTCTTTCCAAC
* *
259631 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAAACAAACAAGAATAGTCATACTAATCCCCA
130 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCA
* * *
259696 TTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCCCATAAGGATACACGATATTGATGCTTT-
195 TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTG
* * * * * *
259760 GATTTCGAAACAAAGGCTTTTTTCCC-CCAATATTT-ATAAAGTCTAAGTTCATGCGTCAAATGA
260 GA-TTCGCAAGAAAGGCTTTTTTCCCACCAAT-TTTGTTAAAGTCTAAGTTCGTGCCTCAAATAA
* * ** *
259823 GCCAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAAACACTATAAAAACATTCTC
323 GACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTC
* * * *
259888 CTTATAAGGATAAATAAT-TCTGATGATTTTCTTTTGCATTGAAAT-TATTTCTTCGCACTATTT
388 CTTATTAGGATAAATGATAT-TGATGATTTTCTTTTGCATTGAAATCT-TTTCTTTGCCCTATTT
*
259951 TCCTTAAAATCAAAGTTCATCCCTTA
451 TCCTTAAAATCAAAGTCCATCCCTTA
* * *
259977 AATAAGACAAGCATCGATTCTCGTAACAGTCACCAATCTTTTCAAAGATCGGGAACCAAAAACAC
1 AATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTC-AAGATTGGGAACCAAAAACAC
* *
260042 ATTGCCTTTATTAGGATACATGACATTGATACTTT
65 ATTCCCTTTATTAGGATACATGACATTGATGCTTT
260077 AAGGTTGCAA
Statistics
Matches: 2854, Mismatches: 502, Indels: 189
0.81 0.14 0.05
Matches are distributed among these distances:
470 4 0.00
471 136 0.05
472 222 0.08
473 291 0.10
474 389 0.14
475 363 0.13
476 771 0.27
477 271 0.09
478 6 0.00
479 1 0.00
480 1 0.00
486 1 0.00
487 5 0.00
488 3 0.00
492 3 0.00
493 6 0.00
501 1 0.00
502 2 0.00
503 73 0.03
504 295 0.10
505 10 0.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.36
Consensus pattern (476 bp):
AATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACA
TTCCCTTTATTAGGATACATGACATTGATGCTTTGGTGATGCAAAAAAAGCTTTTCTTTCCAACG
TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCAT
TCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGG
ATTCGCAAGAAAGGCTTTTTTCCCACCAATTTTGTTAAAGTCTAAGTTCGTGCCTCAAATAAGAC
AAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTT
ATTAGGATAAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTT
AAAATCAAAGTCCATCCCTTA
Found at i:260336 original size:317 final size:315
Alignment explanation
Indices: 259774--260386 Score: 801
Period size: 318 Copynumber: 1.9 Consensus size: 315
259764 TCGAAACAAA
* * * **
259774 GGCTTTTTTCCCCCAATATTTATAAAGTCTAAGTTCATGCGTCAAATGAGCCAAACAAGGATTCT
1 GGCTTTTTTCCCCAAATATTTATAAAGTCAAAGTTCATGCCTCAAATGAAACAAACAAGGATTCT
* * *
259839 AGTAATGATCTTCATTCATTTTGTGATTAAACACTATAAAAACATTCTCCTTATAAGGATAAATA
66 AGTAACGATCTTCATTCATTTTGTGAATAAACACTATAAAAACATTCTCCTCATAAGGATAAATA
259904 ATTCTGATGATTTTCTTTTGCATTGAAATTATTTCTTCGCACTATTTTCCTTAAAATCAAAGTTC
131 ATTCTGATGATTTTCTTTTGCATTGAAATTATTTCTTCGCACTATTTTCCTTAAAATCAAAGTTC
*
259969 ATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCACCAATCTTTTCAA-AGATCGGGAAC
196 ATCCCTTAAATAAGACAAGCATCAATTCTCGTAACAGTCACCAATCTTTTCAAGA-AT-GGGAAC
*
260033 CAAAAACACATTGCC-TTTATTAGGATACATGACATTGATACTTTAAGGTTGCAAGAAT
259 C-AAAACACATT-CCTTTTATTAGGAAACATGACATTGATACTTTAAGGTTGCAAGAAT
* *
260091 GGCTTTTTTCCTGCCAAAT-TTTGTAAAGTCAAAGTTCATGCCTTAAATGAAACAAA-AATGGAT
1 GGCTTTTTTCC--CCAAATATTTATAAAGTCAAAGTTCATGCCTCAAATGAAACAAACAA-GGAT
* * ** * * * *
260154 TCTATTAACGATCTTTATTCATTTTGTGAATAGGCACTGTAAACACATTTTCCTCATTAGGATAA
63 TCTAGTAACGATCTTCATTCATTTTGTGAATAAACACTATAAAAACATTCTCCTCATAAGGATAA
* * *
260219 ATAATAT-TGATGATTTTCTTTTTC-TTGGAAATCT-TTT-TTTGCCCTATTTTCCTTAAAATCA
128 ATAAT-TCTGATGATTTTCTTTTGCATT-GAAAT-TATTTCTTCGCACTATTTTCCTTAAAATCA
* * * * * * *
260280 ATGTTCGTCCCTTAAATAAGGCAAGCGTCAATTCTTGTAACAGTCCCCATTCTTTTCAAGAATGG
190 AAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCGTAACAGTCACCAATCTTTTCAAGAATGG
*
260345 GAACCAAAACACATTCCTTTTGTTAGGAAACATGACATTGAT
255 GAACCAAAACACATTCCTTTTATTAGGAAACATGACATTGAT
260387 GCTTCGGGGT
Statistics
Matches: 257, Mismatches: 31, Indels: 18
0.84 0.10 0.06
Matches are distributed among these distances:
314 2 0.01
315 32 0.12
316 7 0.03
317 90 0.35
318 119 0.46
319 7 0.03
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.36
Consensus pattern (315 bp):
GGCTTTTTTCCCCAAATATTTATAAAGTCAAAGTTCATGCCTCAAATGAAACAAACAAGGATTCT
AGTAACGATCTTCATTCATTTTGTGAATAAACACTATAAAAACATTCTCCTCATAAGGATAAATA
ATTCTGATGATTTTCTTTTGCATTGAAATTATTTCTTCGCACTATTTTCCTTAAAATCAAAGTTC
ATCCCTTAAATAAGACAAGCATCAATTCTCGTAACAGTCACCAATCTTTTCAAGAATGGGAACCA
AAACACATTCCTTTTATTAGGAAACATGACATTGATACTTTAAGGTTGCAAGAAT
Found at i:262628 original size:475 final size:474
Alignment explanation
Indices: 261641--269208 Score: 8103
Period size: 475 Copynumber: 16.1 Consensus size: 474
261631 ATAAAAGATA
* * * ** *
261641 CATGGAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAACT-ATTCCCTTAAATAGGACAAG
1 CATGGTAATCTTTTCTTTGCCCTATTTTCCTCAAAATCAAAGTTCATT-CCTTAAATAAGACAAG
** *
261705 CATCGATTCTCATAATTGTCTCCATT-TTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATT
65 CATCGATTCTCATAACAGTCTCTATTCTTTTCAAGATT-GGAACCAAAAACACATTCCCTTCATT
* * * *
261769 AAGG-TACATGACATTGATGCTTTGGGGTCGCAGGAAATGCTTTTCTTTCCATCGTTTTTGATAG
129 -AGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAG
* * * * * * * * * *
261833 AATTAAAGTTTATCTCTTAAATAGGATAAATATTAATAGTCATACTAATCCCCAATATTTTTAGG
193 AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGG
* * * * *
261898 ATTGGGCACCGTAAACATAGTCTTCTC-ATAAGGATACACGATTTTGATGCTTTGGTTTCGA--A
258 ATTAGGCACCATAAACATAGTCTTCTCAAT-AGGATACATGATATTGGTGCTTTGGTTTC-ACCA
* * * * *
261960 AGAAAGGCTTTCTTCCCCCCAATTTTTGTAAAGTCAAAGTTCGT-CGCTCAAATGAAATAAACAT
321 A-AAAGGCTTT-TTCCCACAAATTTTTGTAAAGTCTAAGTTCATGC-CTCAAATGAGATAAACAT
** * *
262024 GGATTCTAGTAATGATCTTCATTCATTTTGTGATTAACCACTATAAACACATTCACCTCATTAGG
383 GGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAG
* * * * *
262089 ATAAATGATACTGATTATTTTTTTTTG
448 ATAAAAGATATTGATGATTTTCTTTAG
* * * *
262116 CATGGAAATCTTTTCTTTGCCTTA-TTTCCTTAAAATCAAAGTTCATTCCTTAAAAAAGACAAGC
1 CATGGTAATCTTTTCTTTGCCCTATTTTCCTCAAAATCAAAGTTCATTCCTTAAATAAGACAAGC
* * * *
262180 ATCGATTCTCGTAACATTCTCTATTCTTTTCAAGATTAGGAACCGAAAACACATTCCCTTCATAA
66 ATCGATTCTCATAACAGTCTCTATTCTTTTCAAGATT-GGAACCAAAAACACATTCCCTTCATTA
* * *
262245 AGATACATGACATT-AGTGCTTTGTTGTCGCAAGAAAAGCTTTTAC-TTCCAACGTTTTTGATAA
130 GGATACATGACATTGA-TGCTTTGGTGTCGCAAGAAAAGCTTTT-CTTTCCAACGTTTTTGATAG
* * * *
262308 AATCAAAGTTTTTCTCTTAAATAAGACAAACAGGAATGCTCATACTAATCCCCATTCTTTTTAGG
193 AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGG
* * *
262373 ATTAGGCACCATAAACATTGTCGTCTCAATAGGATACAAGATATTGGTGCTTTGGTTTCACCAAA
258 ATTAGGCACCATAAACATAGTCTTCTCAATAGGATACATGATATTGGTGCTTTGGTTTCACCAAA
* * * ** * * *
262438 AAAGCATTTTCCTATTAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATGAGACAAGCATGGATT
323 AAGGCTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGATAAACATGGATT
* * *
262503 CTAGTAACGATTTTCAATCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAA
388 CTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAA
* * *
262568 ACATATTGATGATTTTCATTAA
453 AGATATTGATGATTTTCTTTAG
* * * * * *
262590 CATGGGAATATTTTCTTAGCCATATTTTCCTCAAAATCATTA-TTCA-TCTGTTAAATAAGACAA
1 CATGGTAATCTTTTCTTTGCCCTATTTTCCTCAAAATCA-AAGTTCATTC-CTTAAATAAGACAA
* *
262653 GCATTGATTCTCGA-AACAGTCTCTATTCTTTTCAAGATTTGGAACCAAAAACACATTCCTTTCA
64 GCATCGATTCTC-ATAACAGTCTCTATTCTTTTCAAGA-TTGGAACCAAAAACACATTCCCTTCA
* * * * * *
262717 TTATGATACATCACATTGATCCTTTGGTGTCACAAGAAAAGCTTTTATTTCTAACGTTTTTGATA
127 TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTGATA
* * *
262782 GAATCAAAGTTTGTCTCTTGAAA-AAGACAAACAAGAATAGTTATACTAATCCCC-TATCTTTTC
192 GAATCAAAGTTTGTCTCTT-AAATAAGACAAACATGAATACTCATACTAATCCCCAT-TCTTTTC
* * * * * * ** *
262845 TA-GATTAAGCACTATTAACATAGTATTCAC-ATAAGGATTCGCGATATTGATGCTTTGGTTTCA
255 -AGGATTAGGCACCATAAACATAGTCTTCTCAAT-AGGATACATGATATTGGTGCTTTGGTTTCA
* * *
262908 CCAAAAATGCTTTTTCCCATAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACAT
318 CCAAAAAGGCTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGATAAACAT
* *
262973 GGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAAG
383 GGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAG
*
263038 ATAAAAGATATTGATGATTTTATTTAG
448 ATAAAAGATATTGATGATTTTCTTTAG
263065 CATGGTAATCTTTTCTTTGCCCTATTTTCCTCAAAATCAAAGTTCA-TCTCTTAAATAAGACAAG
1 CATGGTAATCTTTTCTTTGCCCTATTTTCCTCAAAATCAAAGTTCATTC-CTTAAATAAGACAAG
* * * * *
263129 CATCGATTCTCATAACAATCTCCATTATTTTCAAGATTAAGAACCAAAAACACATTCCTTTCATT
65 CATCGATTCTCATAACAGTCTCTATTCTTTTCAAGATT-GGAACCAAAAACACATTCCCTTCATT
* * ***
263194 AGGATATA-GAACATTGAT-C------CT-GCAAGAAAAGCTTTTCTTTCCAATAATTTTGATAG
129 AGGATACATG-ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAG
* * * **
263250 AATCAAAGCTTGT-TACTTAAATAAGATAAACATGAATACTCATATTAATCATCATTCTTTTCAG
193 AATCAAAGTTTGTCT-CTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAG
* * * * * ** *
263314 GATTAGGCACCTTAAACATTGTCTTCTCAATAGGATAGAAGATATCGGTGCTTTGGTTTCATGAG
257 GATTAGGCACCATAAACATAGTCTTCTCAATAGGATACATGATATTGGTGCTTTGGTTTCACCAA
* *
263379 AAAGGCTTTTTCCCACAAATTTTTATAAAGT-TCAAGTTTATGCCTCAAATGAGATAAACATGGA
322 AAAGGCTTTTTCCCACAAATTTTTGTAAAGTCT-AAGTTCATGCCTCAAATGAGATAAACATGGA
* * * * * *
263443 TTCTAGCAATGATCTTTATTCATTTTGTGATTAGGTACTATAAACGCATTGTCCTCTTTAAGATA
386 TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATA
263508 AAAGATATTGATGATTTTCTTTAG
451 AAAGATATTGATGATTTTCTTTAG
* * *
263532 CATGGTAATCTTTTCTTTGCCCTATTTTCCTCAAAATCAAAGTTCATTCCCTAAAAAAGACAAGT
1 CATGGTAATCTTTTCTTTGCCCTATTTTCCTCAAAATCAAAGTTCATTCCTTAAATAAGACAAGC
* * * * * *
263597 ATCAATTCTCATAACAGTCTCCATTTTTTTCAAGGTTTGGAACCAAAAACACAGTCTCTTCATTA
66 ATCGATTCTCATAACAGTCTCTATTCTTTTCAA-GATTGGAACCAAAAACACATTCCCTTCATTA
* * * * * *
263662 AGATGCATGACATTGATGCTTTGGGGTTGCAGGAAATGCTTTTCTTTCC-ACTGTTTTTGATAGA
130 GGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAAC-GTTTTTGATAGA
* * * * *
263726 ATCAAAGTTTGTCTCTTGAATAAGACAAA-AGAGAATAGTCATACTAAT-CCTAGTCTTTTCAGG
194 ATCAAAGTTTGTCTCTTAAATAAGACAAACA-TGAATACTCATACTAATCCCCATTCTTTTCAGG
* * * * *
263789 ATTAGGCACCATTAACATAGTCTTC-AAATAAGGATACACGATATTGATGCTTTGGTTTC-CAAA
258 ATTAGGCACCATAAACATAGTCTTCTCAAT-AGGATACATGATATTGGTGCTTTGGTTTCACCAA
* * * * *
263852 GAAAGGCTTTCTTCCCTGC-AATTTTGGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATG
322 -AAAGGCTTT-TTCCC-ACAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGATAAACATG
* * * * * * *
263916 GATTCAAGTAATGATCTTC-TTCATTCTATGATTAGGCACAATAAAGACATTCTCCTTATTAGGA
384 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGA
** * * * *
263980 TAATTGATACTAATTATTTTCTTTTG
449 TAAAAGATATTGATGATTTTCTTTAG
* * * * * *
264006 CGTGGAAATCTTTTCTTTGCCCTATTTTGCTTAACATCAAAGTTCATCCCTTAAATAAGACAAGC
1 CATGGTAATCTTTTCTTTGCCCTATTTTCCTCAAAATCAAAGTTCATTCCTTAAATAAGACAAGC
* * * * *
264071 GTCGATTCTCGTAACAGTCTCTA-CCCTTTCAAGATTGAGAACCAGAAACACATTCCCTTCATTA
66 ATCGATTCTCATAACAGTCTCTATTCTTTTCAAGATTG-GAACCAAAAACACATTCCCTTCATTA
* * * ** *
264135 GGATACATGACATTGATGCTTTGTTGTTGTAAGAAAAGC-TTTCTTTGAAATGTTTTTGATAGAA
130 GGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAA
* * * * *
264199 TCAAAGTTTGTCACTTAAACAAGACAAACATGAGTGCTCATACTAATCCCCATTCTTGTCAGGAT
195 TCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGAT
* * * * ** *
264264 TAGGTACCATAAATATAGTCTTCTCAATAGGATACAAGATATTGGTG-TTTCAGTTTCAATAGAA
260 TAGGCACCATAAACATAGTCTTCTCAATAGGATACATGATATTGGTGCTTT-GGTTTCACCAAAA
* * * * *
264328 AGCCTTTTTCCCATAAATTTTTGTAAAGTCTAATTTCATGCCTTAAATGAGATAAACTTGGATTC
324 AGGCTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGATAAACATGGATTC
** ** * * **
264393 TAGTAACAATCTTCATTTGTTTTGTAATTAGGTACTATAAACACATTCTTTTCATTAAGATAAAA
389 TAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAAA
* *
264458 GATATTGATCATTTTTTTTAG
454 GATATTGATGATTTTCTTTAG
* * * * * *
264479 CAAGGTAATCACTTT-TTTGCTCGATTTTCCTCAAAATCAAAGTTTATCCCTTAAATAAGACAAG
1 CATGGTAATC-TTTTCTTTGCCCTATTTTCCTCAAAATCAAAGTTCATTCCTTAAATAAGACAAG
* ** * * * * *
264543 CATCGATTCTCACAATGGTTTCCA-T-TATTC----TT-----C--TAACACTTTCCCTTCATTA
65 CATCGATTCTCATAACAGTCTCTATTCTTTTCAAGATTGGAACCAAAAACACATTCCCTTCATTA
* ** *
264595 GGATATATGACATTGATGCTTTGGTGTCATAAGAAAAGCTTTTCTTTCCAACATTTTTGATAGAA
130 GGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAA
* * * ** *
264660 TCAAAGCTTGTCGCTTAAATAAGACAAACATTAATACTCATACTAATTTCCATTCCTTTCTA-GA
195 TCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTC-AGGA
* * *
264724 TCTAGG-ACCATAAACATATTCTTCTCAATAGGATATATGATATTGGTGCTTTGGTTTCACCATA
259 T-TAGGCACCATAAACATAGTCTTCTCAATAGGATACATGATATTGGTGCTTTGGTTTCACCAAA
* *
264788 AAGGCTTTTTCCCATAAATTTTTGTAAAGTCTAAGTTCATGTCTCAAATGAGATAAACATGGATT
323 AAGGCTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGATAAACATGGATT
* * **
264853 CTAGTAATAATCTTCATTCATTTTGTGCTTAGGCACTATAAACACATTCTCCTTTTTAAGATAAA
388 CTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAA
264918 AGATATTGATGATTTT-TTTCAG
453 AGATATTGATGATTTTCTTT-AG
* * * *
264940 CATTGTATTCTTTTCATTT-CCCTATTTTTCACAAAATCAAAGTTCA-TCCTTTAAATAAGACAA
1 CATGGTAATCTTTTC-TTTGCCCTATTTTCCTCAAAATCAAAGTTCATTCC-TTAAATAAGACAA
* *
265003 GCATAGATTCTCATAACAGTCTTTATTCTTTTCAAGATTGG------------------------
64 GCATCGATTCTCATAACAGTCTCTATTCTTTTCAAGATTGGAACCAAAAACACATTCCCTTCATT
* * * * * *
265044 -GAATACATGACATTGATACTTTGTTGTCGTAAGAAAAACTTTTCTTTCCAATGTTTTTGATAGA
129 AGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGA
* *
265108 ATCAAAGTCTGTCTCTTAAATGAGACAAA-ATGAATACTCATACTAATCCCCATTCTTTTCAGGA
194 ATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGA
* * ** * * *
265172 TTAGGCGCCATAATA-ATAGTCTCCTCAATAGGATACACAATATTTGTGCTTTGGCTTCACCAGA
259 TTAGGCACCATAA-ACATAGTCTTCTCAATAGGATACATGATATTGGTGCTTTGGTTTCACCAAA
* * * * * * *
265236 AAGGTTTTTTCCCACAAATTTTTGTAAAGTCCATGTTCAGGCCTCAAATGAGACAAACATAGAAT
323 AAGGCTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGATAAACATGGATT
* * * * * * * *
265301 CTAGCAATTATCTTTATTCATTTTGTGATTAGGTACTTTAAACGCATTCTCCTCTTTAGGATAAA
388 CTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAA
265366 AG-TCATTGATGATTTTCTTTAG
453 AGAT-ATTGATGATTTTCTTTAG
* * *
265388 CATGGTAATCTTTTTTTTCCCCTATTTT-CTCAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
1 CATGGTAATCTTTTCTTTGCCCTATTTTCCTCAAAATCAAAGTTCATTCCTTAAATAAGACAAGC
* * * * * * *
265452 ATTGGTTCTCATAATAGTCTCCATTCTTTTCAAGGTTTGGAACCAATAACACATTCTCTTCATTA
66 ATCGATTCTCATAACAGTCTCTATTCTTTTCAA-GATTGGAACCAAAAACACATTCCCTTCATTA
* * * * *
265517 GGATGCATGACTTTGATACTTAGGGTTTAGGGTGCTTTGGGGTCGCAGGAAATGCTTTTTTTTCC
130 GGATACATGAC------A-TT---G---A---TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* * ** *
265582 ATCGTTTTTGATAGAATCAAAGTTTGTCTCTTGAATAAGACAAACAACAATAGTCATACTAATCC
179 AACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCC
* * * * * * *
265647 CAAGTCTTCTCAGGATTAGGCACCATTAACATAGTCTTCTC-ATAAGGATACACGAAATTGATGC
244 CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAAT-AGGATACATGATATTGGTGC
* * * * * * *
265711 TTTAGTTTCTA--AAGGAAGG-TTTTCATCCCTCTAGTTTTTGTAAAGTCTAAGTTCAGGTCTCA
308 TTTGGTTTC-ACCAA-AAAGGCTTTT--TCCCACAAATTTTTGTAAAGTCTAAGTTCATGCCTCA
* **
265773 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACACACTATAAACACA
369 AATGAGATAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
265838 TTCTCCTCATTAAGATAAAAGATATTGATGATTTTCTTTAG
434 TTCTCCTCATTAAGATAAAAGATATTGATGATTTTCTTTAG
* * *
265879 CATGGTAATCATTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAG-
1 CATGGTAATCTTTTCTTTGCCCTATTTTCCTCAAAATCAAAGTTCATTCCTTAAATAAGACAAGC
* * * * *
265943 --C-A-TCT-GTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAATAACATATTCACTTCATTA
66 ATCGATTCTCATAACAGTCTCTATTCTTTTCAAGATT-GGAACCAAAAACACATTCCCTTCATTA
* * * *
266003 GGATACATGACATTGATGCTTTGGGGT--CATAGGAATGCTTTTCTTTCCAAAGTTTTTGATAGA
130 GGATACATGACATTGATGCTTTGGTGTCGCA-AGAAAAGCTTTTCTTTCCAACGTTTTTGATAGA
* * * * *
266066 AACAAAGTTTGTCTCTTAAATAAAACAAACATGAATACTCATACCAATTCCCATTCCTTTCAGGA
194 ATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGA
* * * *
266131 TTAGGCACTATAAACATAGTCTTCTTAATAGGATACAAGATATTGGTGCTTTGGTTTCACTATAA
259 TTAGGCACCATAAACATAGTCTTCTCAATAGGATACATGATATTGGTGCTTTGGTTTCACCA-AA
* ** * * * *
266196 ATGTTTTTTTCCCATAAATTTTTGTAAACTCTAAGTTCATGCCTCAAATCAGACAAACATGGATT
323 AAGGCTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGATAAACATGGATT
** *
266261 CTAGTAACAATCTTCATTCATTTTGTGATTAGGTACTATAAACACATTCTCCTCATTAAGATAAA
388 CTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAA
* *
266326 ATATATTGATGATTTTATTTAG
453 AGATATTGATGATTTTCTTTAG
* * * *
266348 CATAGTAATCATTTT-TTTGCCTTATTTTCCTCAAAAGCAAAGTTCATCCCTTAAATAAGACAAG
1 CATGGTAATC-TTTTCTTTGCCCTATTTTCCTCAAAATCAAAGTTCATTCCTTAAATAAGACAAG
* * * * * *
266412 CAAT-GATTCTCATGATAGTCTCCA-T-TGTTC-----T-----C-ATAACGCATTCCCTTCATT
65 C-ATCGATTCTCATAACAGTCTCTATTCTTTTCAAGATTGGAACCAAAAACACATTCCCTTCATT
* * * * * * *
266463 AGCATACATGACATTGATGCTTTCGTGTCACTAGAAAAGCTTTTCTTTCC-ATGATTCTGATAGA
129 AGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGA
* * * * *
266527 ATCAAAGTTTGTCACTTAAATAAGATAAATATGAATGCTCTTACTAATCCCCATTCTTTTCAGGA
194 ATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGA
* * * * * * *
266592 TTAGGCATCATGAACATGGTCATCTCAATAGGATATATGATATTGGTG-TGTTCGTTTCGCCAGA
259 TTAGGCACCATAAACATAGTCTTCTCAATAGGATACATGATATTGGTGCT-TTGGTTTCACCA-A
* * *
266656 AAA-GCTTTTTCCCACAAATTTTTGTAAAATTTAAGTTCATGCCACAAATGAGATAAACATGGAT
322 AAAGGCTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGATAAACATGGAT
* *
266720 TCTAGAAATGATCTTCATTCATTTTGTGCATT-GGCACTATAAATACATTCTCCTCATTAAGATA
387 TCTAGTAATGATCTTCATTCATTTTGTG-ATTAGGCACTATAAACACATTCTCCTCATTAAGATA
* *
266784 AAAGAGATTGATGATTTTCTTTAA
451 AAAGATATTGATGATTTTCTTTAG
* * * * * *
266808 CATGGGAAT-TCTTTCTTTGCCTTATTTTCC-AAAGAATCAAAGTTGA-TCCGCTAAATAAGATA
1 CATGGTAATCT-TTTCTTTGCCCTATTTTCCTCAA-AATCAAAGTTCATTCC-TTAAATAAGACA
* * * * * * * **
266870 AACATCGATCCTCGTAATAGCCTTTATTTTTTTCAAGATTGGGAACCAAAAACACATTCTTTTCA
63 AGCATCGATTCTCATAACAGTCTCTATTCTTTTCAAGATT-GGAACCAAAAACACATTCCCTTCA
* * * *
266935 TTAAGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAGCATTTTTCATA
127 TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTGATA
* * * *
267000 GAATCAAAGCTTT-T-TACTTAAATGAGACAAATATGAATACTTATACTAATCCCCATTCTTTTT
192 GAATCAAAG-TTTGTCT-CTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTC
* * * * *
267063 AGGATCT-GGCACTATAGACATAGCCTTCTCAATAGGATATATGATATTCGTGCTTTGGTTTCAC
255 AGGAT-TAGGCACCATAAACATAGTCTTCTCAATAGGATACATGATATTGGTGCTTTGGTTTCAC
* * *
267127 CTAAAAGGCTTTTTCCCATAAATTTTTGCAAAGTCTAAGTTCATGCCTCAAATGAGATAAACATG
319 CAAAAAGGCTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGATAAACATG
* * * **
267192 GATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTACAAACGCATTCTCCTTTTTAAGA
384 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGA
*
267257 TAAAAGATACTGATGATTTTCTTTAG
449 TAAAAGATATTGATGATTTTCTTTAG
* * * * *
267283 CATTGTATTCTTTTGC-TTACCTTATTTTCCACAAAATCAAAGTTCA-TCTCTTAAATAAGACAA
1 CATGGTAATCTTTT-CTTTGCCCTATTTTCCTCAAAATCAAAGTTCATTC-CTTAAATAAGACAA
* * *
267346 GCATCGATTCTCATAATAGTCTCTATTCTTTTCAAGATTGGAACCAAAAACACATTCCCTTTATA
64 GCATCGATTCTCATAACAGTCTCTATTCTTTTCAAGATTGGAACCAAAAACACATTCCCTTCATT
* * * *
267411 AGGATACATGACATTGATGCTTCGGTGTCACAAGAAAATCTTTTCTCTCCAACGTTTTTGATAGA
129 AGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGA
* * * *
267476 ATCAAAGTTTATCTTTTAAATAAGACAAACACGAATACTCATACTAATCCCCATTCTTTTGAGGA
194 ATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGA
* *
267541 TTAGGCACCATAAACATAATCTTCTCAATAGGATATATGATATTGGTGCTTTGGTTTCA-CAAGA
259 TTAGGCACCATAAACATAGTCTTCTCAATAGGATACATGATATTGGTGCTTTGGTTTCACCAA-A
* * * * * *
267605 ATGGCTTTTTCCCACAAATTTTTGTAAAGTTTCAGTTCATGCCTTAATTGAGATGAACATGGATT
323 AAGGCTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGATAAACATGGATT
* * * * ** * *
267670 CCAGTAATGATCTTCATTCATTTTGGGATTAGGCACTACAAATACATTCTCCTTTTTAGGGTAAA
388 CTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAA
267735 AGATATTGATGATTTTCTTTAG
453 AGATATTGATGATTTTCTTTAG
** * * ** * *
267757 CATTATATTCTTTTCTTTGCCTTATTTTCCAAAAAATCAAAGTTCATCCCTAAAATAAGACAAGC
1 CATGGTAATCTTTTCTTTGCCCTATTTTCCTCAAAATCAAAGTTCATTCCTTAAATAAGACAAGC
* *
267822 ATCGATTCTAATAACAGTCTCTATTCTTTTCAAGATTGGAACCAAAAACACATTCCCTTTATTAG
66 ATCGATTCTCATAACAGTCTCTATTCTTTTCAAGATTGGAACCAAAAACACATTCCCTTCATTAG
* * * * * * *
267887 GATACATGACATCGATGCTTCGATGTCACAAGAAAATCTTTTCTCTCCAACATTTTTGATAGAAT
131 GATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAAT
* * * * * *
267952 CAACGTTTGTCTTTTAAATAAGACAAACACGAATACTCATACCAATCCCTATTCTTTTGAGGATT
196 CAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATT
* * * * *
268017 AGGCACCATAAACATAGTCTTCTCAGTAGGATATATGATATTAGTGCTTTGGTTTCACCAGAATG
261 AGGCACCATAAACATAGTCTTCTCAATAGGATACATGATATTGGTGCTTTGGTTTCACCAAAAAG
*
268082 GCTTTTTCCCACAAATTTTTGTAAAGCCTAAGTTCATGCCTCACAAATGAGATAAACATGGATTC
326 GCTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCATGCCT--CAAATGAGATAAACATGGATTC
* * * * * ** * *
268147 TCGTAATGATCTTCA-ACATTTTGCGATTAGGCACTACAAACACATTTTCCTTTTTAGGGTAAAA
389 TAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAAA
268211 GATATTGATGATTTT-TTTCAG
454 GATATTGATGATTTTCTTT-AG
* * *
268232 CATTGT-ATACTTTTCTTT-CCCT-TATTTCCACAAAATCAAAGTTTCATCCCTTAAATAAGACA
1 CATGGTAAT-CTTTTCTTTGCCCTAT-TTTCCTCAAAATCAAAG-TTCATTCCTTAAATAAGACA
*
268294 AGCATCGATTCTCGTAACAGTCTCTATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCA
63 AGCATCGATTCTCATAACAGTCTCTATTCTTTTCAAGATT-GGAACCAAAAACACATTCCCTTCA
* * * ** *
268359 TTAGGATACACGACATTGATGC-TCGGTTGCCATAAGAAAAGCTTTTTTTTCCAACGTTTTTGAT
127 TTAGGATACATGACATTGATGCTTTGG-TGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTGAT
* * *
268423 AGAATCAAAG-TT-TCTCGTAAATGAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTA
191 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCA
* * * * *
268486 GGATCTA-GAACCATAAACATAGTCTTTTCAATAGGATATATGATATTGGTGCTGTGGTATCACC
256 GGAT-TAGGCACCATAAACATAGTCTTCTCAATAGGATACATGATATTGGTGCTTTGGTTTCACC
* * *
268550 AGAATGGCTTTTTCTCACAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGATAAACATGG
320 AAAAAGGCTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGATAAACATGG
* * * **
268615 ATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCACTACAAACACATTCTCTTTTTTAAGAT
385 ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGAT
*
268680 AATAGATATTGATGATTTTCTTTAG
450 AAAAGATATTGATGATTTTCTTTAG
* * * * * * * * *
268705 CATTGT-ATTTCTTTCCTTGCCTTATTTTTCAT-AAAATCAAAGTTTATCCCATAAATAAGAAAA
1 CATGGTAATCT-TTTCTTTGCCCTA-TTTTCCTCAAAATCAAAGTTCATTCCTTAAATAAGACAA
* * *
268768 GCATCGATTCTCGTAACAGTCTTTATT-TCTTTCAAGATTGGGAACCAAAAACACATTCCTTTCA
64 GCATCGATTCTCATAACAGTCTCTATTCT-TTTCAAGATT-GGAACCAAAAACACATTCCCTTCA
* * * *
268832 TTAGGATACAGGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCATTCCAGCGTTTTTGATT
127 TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTGATA
* * * *
268897 GAATCAAAGCTTGTCTCTTAAATGAA-ACAAACATGAATACTCATACTAATCTCCATTTTTTTTA
192 GAATCAAAGTTTGTCTCTTAAAT-AAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCA
* * * * *
268961 GGATTAGGCACCATAAAAATAGTCTTCTCAATAGGATACACGATATTGGCGCTTTGGCTTCACTA
256 GGATTAGGCACCATAAACATAGTCTTCTCAATAGGATACATGATATTGGTGCTTTGGTTTCACCA
* * * * * * * *
269026 GAAAGGCTTTTTCCCATAAATTTTTGTAATGTCCATGTTCAGGCCTCAAATGAGACAAACATGAA
321 AAAAGGCTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGATAAACATGGA
* * ** *
269091 ATCTAGTAATGATCTTCATTCATTTAGTGATTAGGCA-TAATAAACGTATTCTCCTCCTTAAGAT
386 TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACT-ATAAACACATTCTCCTCATTAAGAT
*
269155 AAAAGAT-TTCGACGATTTTCTTTAG
450 AAAAGATATT-GATGATTTTCTTTAG
* *
269180 CATAGTAATCTTTTCTTTGCCCCATTTTC
1 CATGGTAATCTTTTCTTTGCCCTATTTTC
269209 ATAACATTCT
Statistics
Matches: 6004, Mismatches: 876, Indels: 427
0.82 0.12 0.06
Matches are distributed among these distances:
447 68 0.01
448 233 0.04
449 85 0.01
458 1 0.00
459 9 0.00
460 247 0.04
461 475 0.08
462 34 0.01
463 5 0.00
466 6 0.00
467 387 0.06
468 17 0.00
469 312 0.05
470 19 0.00
471 5 0.00
472 164 0.03
473 486 0.08
474 1336 0.22
475 1565 0.26
476 147 0.02
479 3 0.00
480 3 0.00
483 1 0.00
485 3 0.00
486 57 0.01
487 3 0.00
489 72 0.01
490 77 0.01
491 149 0.02
492 35 0.01
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (474 bp):
CATGGTAATCTTTTCTTTGCCCTATTTTCCTCAAAATCAAAGTTCATTCCTTAAATAAGACAAGC
ATCGATTCTCATAACAGTCTCTATTCTTTTCAAGATTGGAACCAAAAACACATTCCCTTCATTAG
GATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAAT
CAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATT
AGGCACCATAAACATAGTCTTCTCAATAGGATACATGATATTGGTGCTTTGGTTTCACCAAAAAG
GCTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGATAAACATGGATTCTA
GTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAAAGA
TATTGATGATTTTCTTTAG
Found at i:267627 original size:158 final size:158
Alignment explanation
Indices: 266914--268592 Score: 424
Period size: 158 Copynumber: 10.6 Consensus size: 158
266904 AAGATTGGGA
* * * * * * * **
266914 ACCAAAAACACATTCTTTTCATTAAGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
1 ACCATAAACACATTCTTCTCATTAGGATATATGATATTGATGCTTTGGTTTCACAAGAATGGC-T
* * * * * *
266979 TTCTTTCCAGC--ATTTTTCATAGAATCAAAGCTT--TTTACTTAAATGAGACAAATATGAATAC
65 TT-TTCCCA-CAAATTTTTGATAGAATCAAAG-TTCATCT-CTTAAATAAGACAAACACGAATAC
* *
267040 TTATACTAATCCCCATTCTTTTTAGGATCT-GGC
126 TCATACTAATCCCCATTCTTTTGAGGAT-TAGGC
* * * ** *
267073 ACTATAGACATAGCCTTCTCAATAGGATATATGATATTCG-TGCTTTGGTTTCACCTAA-AA-GG
1 ACCATAAACACATTCTTCTCATTAGGATATATGATATT-GATGCTTTGGTTTCA-C-AAGAATGG
* * * * * * * * *
267135 CTTTTTCCCATAAATTTTTGCA-A-AGTCTAAGTTCATGC-CTCAAATGAGATAAACATGGATTC
63 CTTTTTCCCACAAATTTTTG-ATAGAATCAAAGTTCAT-CTCTTAAATAAGACAAACACGAATAC
* ** *
267197 T-AGTAATAATCTTCATTCATTTTG-TGATTAGGC
126 TCA-TACTAATCCCCATTC-TTTTGAGGATTAGGC
* * * * ** * * * * * ** * * *
267230 ACTACAAACGCATTCTCCTTTTTAAGATAAAAGATACTGATGATTTTCTTT-AGCATTGTAT-TC
1 ACCATAAACACATTCTTCTCATTAGGATATATGATATTGATGCTTTGGTTTCA-CA-AGAATGGC
* ** ** ** * * * *
267293 TTTTGCTTACCTTATTTTCCACAAAATCAAAGTTCATCTCTTAAATAAGACAAGCATCG-ATTCT
64 TTTTTCCCA-CAAATTTTTGATAGAATCAAAGTTCATCTCTTAAATAAGACAAACA-CGAATACT
* * * * * * *
267357 CATAATAGTCTCTATTCTTTTCAAGATT-GGA
127 CATACTAATCCCCATTCTTTTGAGGATTAGGC
* * * * * * ***
267388 ACCAAAAACACATTCCCTT-T-ATAAGGATACATGACATTGATGCTTCGGTGTCACAAGAAAATC
1 ACCATAAACACATT--CTTCTCATTAGGATATATGATATTGATGCTTTGGTTTCACAAGAATGGC
** * *
267451 TTTTCTCTCCA-ACGTTTTTGATAGAATCAAAGTTTATCTTTTAAATAAGACAAACACGAATACT
64 TTTT-TC-CCACAAATTTTTGATAGAATCAAAGTTCATCTCTTAAATAAGACAAACACGAATACT
267515 CATACTAATCCCCATTCTTTTGAGGATTAGGC
127 CATACTAATCCCCATTCTTTTGAGGATTAGGC
* * * *
267547 ACCATAAACATAATCTTCTCAATAGGATATATGATATTGGTGCTTTGGTTTCACAAGAATGGCTT
1 ACCATAAACACATTCTTCTCATTAGGATATATGATATTGATGCTTTGGTTTCACAAGAATGGCTT
*** * * ** * * *
267612 TTTCCCACAAATTTTTG-TA-AAGTTTCAGTTCATGC-CTTAATTGAGATGAACATGGATTC-CA
66 TTTCCCACAAATTTTTGATAGAA-TCAAAGTTCAT-CTCTTAAATAAGACAAACACGAATACTCA
* * **
267673 GTAATGATCTTCATTCATTTTG-GGATTAGGC
129 -TACTAATCCCCATTC-TTTTGAGGATTAGGC
* * * * ** * * * * ** ** *
267704 ACTACAAATACATTCTCCTTTTTAGGGTAAAAGATATTGATGATTTTCTTT-AGCATTATAT-TC
1 ACCATAAACACATTCTTCTCATTAGGATATATGATATTGATGCTTTGGTTTCA-CAAGA-ATGGC
** ** ** * * * * * *
267767 TTTTCTTTGC-CTTATTTTCCAAAAAATCAAAGTTCATCCCTAAAATAAGACAAGCATCG-ATTC
64 -TTT-TTCCCACAAATTTTTGATAGAATCAAAGTTCATCTCTTAAATAAGACAAACA-CGAATAC
* * * * * * *
267830 TAATAAC-AGTCTCTATTCTTTTCAAGATT-GGA
126 TCAT-ACTAATCCCCATTCTTTTGAGGATTAGGC
* * * * * * * ***
267862 ACCAAAAACACATTCCCTT-T-ATTAGGATACATGACATCGATGCTTCGATGTCACAAGAAAATC
1 ACCATAAACACATT--CTTCTCATTAGGATATATGATATTGATGCTTTGGTTTCACAAGAATGGC
* * ** *
267925 TTTTCTCTCCA-ACATTTTTGATAGAATCAACGTTTGTCTTTTAAATAAGACAAACACGAATACT
64 TTTT-TC-CCACAAATTTTTGATAGAATCAAAGTTCATCTCTTAAATAAGACAAACACGAATACT
* *
267989 CATACCAATCCCTATTCTTTTGAGGATTAGGC
127 CATACTAATCCCCATTCTTTTGAGGATTAGGC
* * * *
268021 ACCATAAACATAGTCTTCTCAGTAGGATATATGATATT-AGTGCTTTGGTTTCACCAGAATGGCT
1 ACCATAAACACATTCTTCTCATTAGGATATATGATATTGA-TGCTTTGGTTTCACAAGAATGGCT
* * ** * * * * *
268085 TTTTCCCACAAATTTTTG-TA-AAGCCTAAGTTCATGCCTCACAAATGAGATAAACATGGATTCT
65 TTTTCCCACAAATTTTTGATAGAA-TCAAAGTTCAT--CTCTTAAATAAGACAAACACGAATACT
* * * ** * *
268148 CGTAATGATCTTCA-ACATTTTG-CGATTAGGC
127 CATACTAATCCCCATTC-TTTTGAGGATTAGGC
* * ** * * * * * * * *
268179 ACTACAAACACATT-TTCCTTTTTAGGGTAAAAGATATTGATGATTT-TTTTCAGCATTGTAT-A
1 ACCATAAACACATTCTT-CTCATTAGGATATATGATATTGATGCTTTGGTTTCA-CA-AGAATGG
* ** ** * * * *
268241 CTTTTCTTTCC-CTTA-TTTCCACAAAATCAAAGTTTCATCCCTTAAATAAGACAAGCATCG-AT
63 C-TTT-TTCCCACAAATTTTTGATAGAATCAAAG-TTCATCTCTTAAATAAGACAAACA-CGAAT
* * * * * * * * *
268303 TCTCGTAAC-AGTCTCTATTCTTTTCAAGATTGGGA
124 ACTCAT-ACTAATCCCCATTCTTTTGAGGATTAGGC
* * * * * * * * **
268338 ACCAAAAACACATTC-CCTTCATTAGGATACACGACATTGATGC-TCGGTTGCCATAAGAAAAGC
1 ACCATAAACACATTCTTC-TCATTAGGATATATGATATTGATGCTTTGGTT-TCACAAGAATGGC
* ** * * *
268401 TTTTTTTTCCA-ACGTTTTTGATAGAATCAAAGTT--TCTCGTAAATGAGACAAACATGAATACT
64 --TTTTTCCCACAAATTTTTGATAGAATCAAAGTTCATCTCTTAAATAAGACAAACACGAATACT
* *
268463 CATACTAATCCCCATTCTTTTTAGGATCTA-GA
127 CATACTAATCCCCATTCTTTTGAGGAT-TAGGC
* * * * * * * *
268495 ACCATAAACATAGTCTTTTCAATAGGATATATGATATTGGTGCTGTGGTATCACCAGAATGGCTT
1 ACCATAAACACATTCTTCTCATTAGGATATATGATATTGATGCTTTGGTTTCACAAGAATGGCTT
* *
268560 TTTCTCACAAATTTTTG-TA-AAGTCTAAGTTCAT
66 TTTCCCACAAATTTTTGATAGAA-TCAAAGTTCAT
268593 GCCTCAAATG
Statistics
Matches: 1056, Mismatches: 367, Indels: 196
0.65 0.23 0.12
Matches are distributed among these distances:
154 2 0.00
155 17 0.02
156 25 0.02
157 295 0.28
158 347 0.33
159 322 0.30
160 46 0.04
161 2 0.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (158 bp):
ACCATAAACACATTCTTCTCATTAGGATATATGATATTGATGCTTTGGTTTCACAAGAATGGCTT
TTTCCCACAAATTTTTGATAGAATCAAAGTTCATCTCTTAAATAAGACAAACACGAATACTCATA
CTAATCCCCATTCTTTTGAGGATTAGGC
Found at i:267702 original size:474 final size:475
Alignment explanation
Indices: 265046--269200 Score: 4781
Period size: 474 Copynumber: 8.8 Consensus size: 475
265036 AAGATTGGGA
* * ** * *
265046 ATACATGACATTGATACTTTGTTGTCGTAAGAAAAACTTTTCTTTCCAATGTTTTTGATAGAATC
1 ATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAATC
* *
265111 AAAGTCTGTCTCTTAAATGAGACAAA-ATGAATACTCATACTAATCCCCATTCTTTTCAGGATTA
66 AAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTA
* * * ** * * * *
265175 GGCGCCATAATA-ATAGTCTCCTCAATAGGATACACAATATTTGTGCTTTGGCTTCACCAGAAAG
131 GGCACCATAA-ACATAGTCTTCTCAATAGGATATATGATATTGGTGCTTTGGTTTCACAAGAATG
* * * * * * *
265239 GTTTTTTCCCACAAATTTTTGTAAAGTCCATGTTCAGGCCTCAAATGAGACAAACATAGAATCTA
195 GCTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGATAAACATGGATTCTA
* * * * * * *
265304 GCAATTATCTTTATTCATTTTGTGATTAGGTACTTTAAACGCATTCTCCTCTTTAGGATAAAAG-
260 GTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCTTTAAGATAAAAGA
* * * * * *
265368 TCATTGATGATTTTCTTTAGCATGGTAATCTTTTTTTTCCCCTATTTT-CTCAAAATCAAAGTTC
325 T-ATTGATGATTTTCTTTAGCATTGTATTCTTTTCTTTGCCTTATTTTCCACAAAATCAAAGTTC
* * * * * *
265432 ATCCCTTAAATAAGACAAGCATTGGTTCTCATAATAGTCTCCATTCTTTTCAAGGTTTGGAACCA
389 ATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCTATTCTTTTCAAGATTGGGAACCA
* *
265497 ATAACACATTCTCTTCATTAGG
454 AAAACACATTCCCTTCATTAGG
* * * * * * *
265519 ATGCATGACTTTGATACTTAGGGTTTAGGGTGCTTTGGGGTCGCAGGAAATGCTTTTTTTTCCAT
1 ATACATGAC------A-TT---G---A---TGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCAA
* ** * *
265584 CGTTTTTGATAGAATCAAAGTTTGTCTCTTGAATAAGACAAACAACAATAGTCATACTAATCCCA
50 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCC
* * * * * * *
265649 AGTCTTCTCAGGATTAGGCACCATTAACATAGTCTTCTC-ATAAGGATACACGAAATTGATGCTT
115 ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAAT-AGGATATATGATATTGGTGCTT
* * * * * *
265713 TAGTTTCTA-AAGGAA-GG-TTTTCATCCCTCTAGTTTTTGTAAAGTCTAAGTTCAGGTCTCAAA
179 TGGTTTC-ACAA-GAATGGCTTTT--TCCCACAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAA
* **
265775 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACACACTATAAACACATT
240 TGAGATAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* * * * *
265840 CTCCTCATTAAGATAAAAGATATTGATGATTTTCTTTAGCATGGTAATCATTTCTTTGCCCTATT
305 CTCCTCTTTAAGATAAAAGATATTGATGATTTTCTTTAGCATTGTATTCTTTTCTTTGCCTTATT
** * *
265905 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAG---C-A-TCT-GTAACAGTCTCCATTC
370 TTCCACAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCTATTC
* * *
265964 TTTTCAAGATTGGGAACCAATAACATATTCACTTCATTAGG
435 TTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGG
* * * * * *
266005 ATACATGACATTGATGCTTTGGGGTCA-TAGGAATGCTTTTCTTTCCAAAGTTTTTGATAGAAAC
1 ATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAATC
* * * *
266069 AAAGTTTGTCTCTTAAATAAAACAAACATGAATACTCATACCAATTCCCATTCCTTTCAGGATTA
66 AAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTA
* * * *
266134 GGCACTATAAACATAGTCTTCTTAATAGGATACAAGATATTGGTGCTTTGGTTTCACTATA-AAT
131 GGCACCATAAACATAGTCTTCTCAATAGGATATATGATATTGGTGCTTTGGTTTCAC-A-AGAAT
** * * * *
266198 GTTTTTTTCCCATAAATTTTTGTAAACTCTAAGTTCATGCCTCAAATCAGACAAACATGGATTCT
194 GGCTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGATAAACATGGATTCT
** * * *
266263 AGTAACAATCTTCATTCATTTTGTGATTAGGTACTATAAACACATTCTCCTCATTAAGATAAAAT
259 AGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCTTTAAGATAAAAG
* * * * *
266328 ATATTGATGATTTTATTTAGCATAGTAATCATTTT-TTTGCCTTATTTTCCTCAAAAGCAAAGTT
324 ATATTGATGATTTTCTTTAGCATTGTATTC-TTTTCTTTGCCTTATTTTCCACAAAATCAAAGTT
* * * *
266392 CATCCCTTAAATAAGACAAGCAAT-GATTCTCATGATAGTCTCCA-T-TGTTC-----T------
388 CATCCCTTAAATAAGACAAGC-ATCGATTCTCATAACAGTCTCTATTCTTTTCAAGATTGGGAAC
* * *
266443 C-ATAACGCATTCCCTTCATTAGC
452 CAAAAACACATTCCCTTCATTAGG
* * * * *
266466 ATACATGACATTGATGCTTTCGTGTCACTAGAAAAGCTTTTCTTTCC-ATGATTCTGATAGAATC
1 ATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAATC
* * * * *
266530 AAAGTTTGTCACTTAAATAAGATAAATATGAATGCTCTTACTAATCCCCATTCTTTTCAGGATTA
66 AAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTA
* * * * * * * **
266595 GGCATCATGAACATGGTCATCTCAATAGGATATATGATATTGGTG-TGTTCGTTTCGCCAGAAAA
131 GGCACCATAAACATAGTCTTCTCAATAGGATATATGATATTGGTGCT-TTGGTTTCACAAGAATG
* * *
266659 GCTTTTTCCCACAAATTTTTGTAAAATTTAAGTTCATGCCACAAATGAGATAAACATGGATTCTA
195 GCTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGATAAACATGGATTCTA
* * *
266724 GAAATGATCTTCATTCATTTTGTGCATT-GGCACTATAAATACATTCTCCTCATTAAGATAAAAG
260 GTAATGATCTTCATTCATTTTGTG-ATTAGGCACTATAAACACATTCTCCTCTTTAAGATAAAAG
* * * *
266788 AGATTGATGATTTTCTTTAACATGGGAATTC-TTTCTTTGCCTTATTTTCCA-AAGAATCAAAGT
324 ATATTGATGATTTTCTTTAGCAT-TGTATTCTTTTCTTTGCCTTATTTTCCACAA-AATCAAAGT
* * * * * * * * *
266851 TGATCCGC-TAAATAAGATAAACATCGATCCTCGTAATAGCCTTTATTTTTTTCAAGATTGGGAA
387 TCATCC-CTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCTATTCTTTTCAAGATTGGGAA
** *
266915 CCAAAAACACATTCTTTTCATTAAG
451 CCAAAAACACATTCCCTTCATTAGG
* * * *
266940 ATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAGCATTTTTCATAGAATC
1 ATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAATC
* * * *
267005 AAAGCTTT-T-TACTTAAATGAGACAAATATGAATACTTATACTAATCCCCATTCTTTTTAGGAT
66 AAAG-TTTGTCT-CTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGAT
* * * *
267068 CT-GGCACTATAGACATAGCCTTCTCAATAGGATATATGATATTCGTGCTTTGGTTTCACCTAA-
129 -TAGGCACCATAAACATAGTCTTCTCAATAGGATATATGATATTGGTGCTTTGGTTTCA-C-AAG
* *
267131 AA-GGCTTTTTCCCATAAATTTTTGCAAAGTCTAAGTTCATGCCTCAAATGAGATAAACATGGAT
191 AATGGCTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGATAAACATGGAT
* * * *
267195 TCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTACAAACGCATTCTCCTTTTTAAGATAA
256 TCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCTTTAAGATAA
* *
267260 AAGATACTGATGATTTTCTTTAGCATTGTATTCTTTTGC-TTACCTTATTTTCCACAAAATCAAA
321 AAGATATTGATGATTTTCTTTAGCATTGTATTCTTTT-CTTTGCCTTATTTTCCACAAAATCAAA
* *
267324 GTTCATCTCTTAAATAAGACAAGCATCGATTCTCATAATAGTCTCTATTCTTTTCAAGATT-GGA
385 GTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCTATTCTTTTCAAGATTGGGA
* *
267388 ACCAAAAACACATTCCCTTTATAAGG
450 ACCAAAAACACATTCCCTTCATTAGG
* * *
267414 ATACATGACATTGATGCTTCGGTGTCACAAGAAAATCTTTTCTCTCCAACGTTTTTGATAGAATC
1 ATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAATC
* * * *
267479 AAAGTTTATCTTTTAAATAAGACAAACACGAATACTCATACTAATCCCCATTCTTTTGAGGATTA
66 AAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTA
*
267544 GGCACCATAAACATAATCTTCTCAATAGGATATATGATATTGGTGCTTTGGTTTCACAAGAATGG
131 GGCACCATAAACATAGTCTTCTCAATAGGATATATGATATTGGTGCTTTGGTTTCACAAGAATGG
* * * * * *
267609 CTTTTTCCCACAAATTTTTGTAAAGTTTCAGTTCATGCCTTAATTGAGATGAACATGGATTCCAG
196 CTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGATAAACATGGATTCTAG
* * * * * *
267674 TAATGATCTTCATTCATTTTGGGATTAGGCACTACAAATACATTCTCCTTTTTAGGGTAAAAGAT
261 TAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCTTTAAGATAAAAGAT
* *
267739 ATTGATGATTTTCTTTAGCATTATATTCTTTTCTTTGCCTTATTTTCCAAAAAATCAAAGTTCAT
326 ATTGATGATTTTCTTTAGCATTGTATTCTTTTCTTTGCCTTATTTTCCACAAAATCAAAGTTCAT
* *
267804 CCCTAAAATAAGACAAGCATCGATTCTAATAACAGTCTCTATTCTTTTCAAGATT-GGAACCAAA
391 CCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCTATTCTTTTCAAGATTGGGAACCAAA
*
267868 AACACATTCCCTTTATTAGG
456 AACACATTCCCTTCATTAGG
* * * * * *
267888 ATACATGACATCGATGCTTCGATGTCACAAGAAAATCTTTTCTCTCCAACATTTTTGATAGAATC
1 ATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAATC
* * * * * *
267953 AACGTTTGTCTTTTAAATAAGACAAACACGAATACTCATACCAATCCCTATTCTTTTGAGGATTA
66 AAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTA
* * *
268018 GGCACCATAAACATAGTCTTCTCAGTAGGATATATGATATTAGTGCTTTGGTTTCACCAGAATGG
131 GGCACCATAAACATAGTCTTCTCAATAGGATATATGATATTGGTGCTTTGGTTTCACAAGAATGG
*
268083 CTTTTTCCCACAAATTTTTGTAAAGCCTAAGTTCATGCCTCACAAATGAGATAAACATGGATTCT
196 CTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCATGCCT--CAAATGAGATAAACATGGATTCT
* * * * * * * *
268148 CGTAATGATCTTCA-ACATTTTGCGATTAGGCACTACAAACACATTTTCCTTTTTAGGGTAAAAG
259 AGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCTTTAAGATAAAAG
* *
268212 ATATTGATGATTTT-TTTCAGCATTGTATACTTTTCTTTCCCTTA-TTTCCACAAAATCAAAGTT
324 ATATTGATGATTTTCTTT-AGCATTGTATTCTTTTCTTTGCCTTATTTTCCACAAAATCAAAG-T
*
268275 TCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCTATTCTTTTCAAGATTGGGAAC
387 TCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCTATTCTTTTCAAGATTGGGAAC
268340 CAAAAACACATTCCCTTCATTAGG
452 CAAAAACACATTCCCTTCATTAGG
* * * * *
268364 ATACACGACATTGATGC-TCGGTTGCCATAAGAAAAGCTTTTTTTTCCAACGTTTTTGATAGAAT
1 ATACATGACATTGATGCTTTGG-TGTCACAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAAT
* * *
268428 CAAAG-TT-TCTCGTAAATGAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATC
65 CAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGAT-
* * * * *
268491 TA-GAACCATAAACATAGTCTTTTCAATAGGATATATGATATTGGTGCTGTGGTATCACCAGAAT
129 TAGGCACCATAAACATAGTCTTCTCAATAGGATATATGATATTGGTGCTTTGGTTTCACAAGAAT
*
268555 GGCTTTTTCTCACAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGATAAACATGGATTCT
194 GGCTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGATAAACATGGATTCT
* * * * *
268620 AGTAATGATCTTTATTCATTTTGTGATTAGGCACTACAAACACATTCTCTTTTTTAAGATAATAG
259 AGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCTTTAAGATAAAAG
* * *
268685 ATATTGATGATTTTCTTTAGCATTGTATT-TCTTTCCTTGCCTTATTTTTCATAAAATCAAAGTT
324 ATATTGATGATTTTCTTTAGCATTGTATTCT-TTTCTTTGCCTTATTTTCCACAAAATCAAAGTT
* * * * *
268749 TATCCCATAAATAAGAAAAGCATCGATTCTCGTAACAGTCTTTATT-TCTTTCAAGATTGGGAAC
388 CATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCTATTCT-TTTCAAGATTGGGAAC
*
268813 CAAAAACACATTCCTTTCATTAGG
452 CAAAAACACATTCCCTTCATTAGG
* * * * *
268837 ATACAGGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCATTCCAGCGTTTTTGATTGAATC
1 ATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAATC
* * * *
268902 AAAGCTTGTCTCTTAAATGAA-ACAAACATGAATACTCATACTAATCTCCATTTTTTTTAGGATT
66 AAAGTTTGTCTCTTAAAT-AAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATT
* * * * * * *
268966 AGGCACCATAAAAATAGTCTTCTCAATAGGATACACGATATTGGCGCTTTGGCTTCACTAGAAAG
130 AGGCACCATAAACATAGTCTTCTCAATAGGATATATGATATTGGTGCTTTGGTTTCACAAGAATG
* * * * * * * *
269031 GCTTTTTCCCATAAATTTTTGTAATGTCCATGTTCAGGCCTCAAATGAGACAAACATGAAATCTA
195 GCTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGATAAACATGGATTCTA
* ** *
269096 GTAATGATCTTCATTCATTTAGTGATTAGGCA-TAATAAACGTATTCTCCTCCTTAAGATAAAAG
260 GTAATGATCTTCATTCATTTTGTGATTAGGCACT-ATAAACACATTCTCCTCTTTAAGATAAAAG
* * *
269160 AT-TTCGACGATTTTCTTTAGCATAGTAATCTTTTCTTTGCC
324 ATATT-GATGATTTTCTTTAGCATTGTATTCTTTTCTTTGCC
269201 CCATTTTCAT
Statistics
Matches: 3176, Mismatches: 406, Indels: 198
0.84 0.11 0.05
Matches are distributed among these distances:
459 8 0.00
460 188 0.06
461 166 0.05
462 22 0.01
467 1 0.00
468 2 0.00
469 314 0.10
470 19 0.01
471 5 0.00
472 39 0.01
473 240 0.08
474 925 0.29
475 713 0.22
476 129 0.04
477 1 0.00
479 3 0.00
480 3 0.00
483 1 0.00
486 60 0.02
487 3 0.00
489 71 0.02
490 76 0.02
491 152 0.05
492 35 0.01
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (475 bp):
ATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAATC
AAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTA
GGCACCATAAACATAGTCTTCTCAATAGGATATATGATATTGGTGCTTTGGTTTCACAAGAATGG
CTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGATAAACATGGATTCTAG
TAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCTTTAAGATAAAAGAT
ATTGATGATTTTCTTTAGCATTGTATTCTTTTCTTTGCCTTATTTTCCACAAAATCAAAGTTCAT
CCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCTATTCTTTTCAAGATTGGGAACCAAA
AACACATTCCCTTCATTAGG
Found at i:272536 original size:474 final size:475
Alignment explanation
Indices: 269232--279555 Score: 11371
Period size: 472 Copynumber: 22.0 Consensus size: 475
269222 TTATTCTCAT
* * * *
269232 AACATATTCCCTTCAATAGGATACATGACATTGATGCTTTAG-TGTCACAAGAAGAGCTTTTCTT
1 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTT-GTTGTCGCAAGAAAAGCTTTTCTT
* * * * * *
269296 TCCAACATTTTTTATAGAATCAAAGCTTGTCACTTAAATGAGACAAACATGAGTACTCATACTAA
65 TCCAACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATGAAACAAACATGAATACTCATACTAA
* * * * *
269361 -CCCCATTCTTTTTAGGATCT-CGCACCATAAACATAGCCTTCTTCAA-AGGATA-ATGATATTC
130 TCCCCATTCTTTTCAAGAT-TAGGCACCATAAACATAGTCTTC-TCAATAGGATATATGATATTG
* * *
269422 GTGCTTTGGTTTCACCAAAAAGGCTTTTTCCCACAAATTTTTGTAAAGTCTAAGTCCATGCCTCA
193 GTGCTTTGGTTTCACCAGAAAGGCTTTTTCCCATAAATTTTTGTAAAGTCTAAGTTCATGCCTCA
* * * *
269487 AATGAGAAAAACATGGATTCTAGT-ATGATCTTCATTGATTTTATGATT-GGCACTACAAACACA
258 AATGAGATAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
** * * * * * **
269550 TTCTCCTTTTTTAGATAAAAGATGTTGATGATTTTCTTTAGCATTGTATTCTTTTCTTTACATTA
323 TTCTCCTCATTAAGATAAAAGATATTGATGATTTTCTTTAGCATGGTAATCTTTTCTTTGCCCTA
* * *
269615 TTTT-TCACAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCATAATAGTCTCTA
388 TTTTCT-ACAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCTA
* * *
269679 TTATTTTCAAGGTT-GGAACCGAA
452 TTCTTTTCAAGATTGGGAACCAAA
* * * * * * *
269702 AACACATTCCCTTTATTAGGATACATAACATTGATGCTTCGGTGTCGCATGAAAATCTTTTCTCT
1 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGTTGTCGCAAGAAAAGCTTTTCTTT
* * *
269767 CCAACATTTTTAATAGAATCAAAGTTTGTCTCTTAAAT-AAGACAAACACGAATACTCATACTAA
66 CCAACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATGAA-ACAAACATGAATACTCATACTAA
* * *
269831 TCCCCAATCTTTTCAAGATTAGGCACCATAAACATGGTCTTCTCAACAGGATATATGATATTGGT
130 TCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAATAGGATATATGATATTGGT
* * * *
269896 GCTTTGGCTTCCCCAGAATGGCTTTTTCCCATAAATTTTCGTAAAGTCTAAGTTCATGCCTCAAA
195 GCTTTGGTTTCACCAGAAAGGCTTTTTCCCATAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAA
* * * * * *
269961 TGAGATAAACATGGATTCTAGTAATAATCTTCATTTATTTTATGCTCAGGCTCTATAAACACATT
260 TGAGATAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* * * * * * *
270026 CTCCTCTTTAAAATAAAAGATATTAATAATTTTCTTTAGTATGGTAAT-TGTTTTTTTGCCTTAT
325 CTCCTCATTAAGATAAAAGATATTGATGATTTTCTTTAGCATGGTAATCT-TTTCTTTGCCCTAT
* *
270090 TTTCCACAAAATCAAAGTTTCATCTCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCTAT
389 TTTCTACAAAATCAAAG-TTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCTAT
*
270155 TTTTTTCAAGATTGGGAACCAAA
453 TCTTTTCAAGATTGGGAACCAAA
* *
270178 AACACATTCCCTTCATTAGGATACATGACATTGATGCTCTGTTGTCACAAGAAAAGCTTTTCTTT
1 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGTTGTCGCAAGAAAAGCTTTTCTTT
*
270243 CCAACGTTTTTGATAGAATCAAAG-TT-TCTCTTAAATGAGACAAACATGAATACTCATACTAAT
66 CCAACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATGAAACAAACATGAATACTCATACTAAT
* * * * *
270306 CCCCATTGTTTTCAGGGTCT-GGCACCATAAACATAGCCTTCTCAATAGGATATATGATATTCGT
131 CCCCATTCTTTTCAAGAT-TAGGCACCATAAACATAGTCTTCTCAATAGGATATATGATATTGGT
* *
270370 GCTTTGGTTTCACCAAAAAGGC--TTTCCCATAAATTTTTGTAAAGTCTAAGTTCATGTCTCAAA
195 GCTTTGGTTTCACCAGAAAGGCTTTTTCCCATAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAA
* **
270433 TGAGATAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTGCAAACACATT
260 TGAGATAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* ** * * * * *
270498 CTCTTTTTTAGGATAAAAGATATTGATGATTTTCTTTAGCATGAATTAT-TTTTTTTTGCCTTAT
325 CTCCTCATTAAGATAAAAGATATTGATGATTTTCTTTAGCATG-GTAATCTTTTCTTTGCCCTAT
* * ** * *
270562 TTTCCACAAAATCAAAGTCCATCCCTTAAATAAGACAAATATCGATTCTCGTAACAGTTTTTATT
389 TTTCTACAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCTATT
*
270627 CTTTTCAAGATTGGGAACCATA
454 CTTTTCAAGATTGGGAACCAAA
* * *
270649 AACACATTCTCTTCATTAGGATACACGACATTGATGCTCTGTTGTCGCAAGAAAAGCTTTTCTTT
1 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGTTGTCGCAAGAAAAGCTTTTCTTT
* * * * * *
270714 CTAACGTTATTCATAAAATCAAAGTTTGTCTCTTAAAT-AAGGCAAACATGAATACTCATTCTAA
66 CCAACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATGAA-ACAAACATGAATACTCATACTAA
** * * * * *
270778 -CCTATATTCTTTTCAAGATCCA-GCACCATAAAC--A-TCCTCTTAATAGGATACATAATATTG
130 TCC-CCATTCTTTTCAAGAT-TAGGCACCATAAACATAGTCTTCTCAATAGGATATATGATATTG
* * * * * *
270838 TTGCTGTGGTTTCACCAGAAAGGCCTTTTCCCACT-AGTTTCTGTAAAGTCTAAATTCATGCCTC
193 GTGCTTTGGTTTCACCAGAAAGGCTTTTTCCCA-TAAATTTTTGTAAAGTCTAAGTTCATGCCTC
* * * *
270902 AAATGAGATAAACAAT-GATTCTAGTAATGATCTTCATTCATTTTATGCTTCGGCTCTATAAACA
257 AAATGAGATAAAC-ATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
* * *
270966 CATTCTCCTCATTAAGATAAAAGATATTAATAATTTTCTTTAGTATGGTAAT-TGTTTCTTTGCC
321 CATTCTCCTCATTAAGATAAAAGATATTGATGATTTTCTTTAGCATGGTAATCT-TTTCTTTGCC
* * * * * *
271030 CTTTTTTCCACAAAATCAAAGTTCATCCCATAAATAAGGCAAGCATCGATTCTCGTAATAGCCTC
385 CTATTTTCTACAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTC
**
271095 TATTCTTTTTTAGATTGGGAACCAAA
450 TATTCTTTTCAAGATTGGGAACCAAA
* * *
271121 AACACATTCCCTTCATTGGGATACATGACAGTGATGCTTTGCTGTCGCAAGAAAAGCTTTTCTTT
1 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGTTGTCGCAAGAAAAGCTTTTCTTT
* * * * *
271186 CCAACGTTATTTG-TAGAGTCAAAGTTTGTCTCCTAAATAAAACAAAAATGAATAGTCATACTAA
66 CCAACGTT-TTTGATAGAATCAAAGTTTGTCTCTTAAATGAAACAAACATGAATACTCATACTAA
* * * * * * *
271250 TCCCTATTCTTTTCAAGATTCGGCACCATTAACATAGTCTTCCCAACAGGATACAAGATATTGGT
130 TCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAATAGGATATATGATATTGGT
* * * * *
271315 GCTTTGGTTTTACCAGAAAGGCTTTTTCCCCA-AAATTTGTCTAAAGTCTAAGCTCTTGCCTCAA
195 GCTTTGGTTTCACCAGAAAGGCTTTTT-CCCATAAATTTTTGTAAAGTCTAAGTTCATGCCTCAA
* * * * ** * *
271379 GTCAGACAAACATGGATCCTACAAATAATCTTCAATCATTTTGTGATTAGGCACTATAAACACAT
259 ATGAGATAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
* * * * * *
271444 TTTCCTTATTAAGATAAAAGATATTGATGATTTTTTTTGGCATGGTAATCATTTCTTTCCCCTAT
324 TCTCCTCATTAAGATAAAAGATATTGATGATTTTCTTTAGCATGGTAATCTTTTCTTTGCCCTAT
** ** *
271509 TTTCCT-CAAAATCAAAGTTCATCTATTAAATAAGACAAGTGTCGATTCTCGTAACAGTCTCCAT
389 TTT-CTACAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCTAT
* *
271573 TCTTTTCGAGATTAGGAACCAAA
453 TCTTTTCAAGATTGGGAACCAAA
* * * * * * * * *
271596 AATACATTCCCTTAATTATGATGCATGGCATTGATGCTCTGGTGTCGTAAGAAAAACTTTTCTTT
1 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGTTGTCGCAAGAAAAGCTTTTCTTT
* * * * * * *
271661 CTAACTTTTTTGATAGAATCAAAGTTTATCTTTTAAAT-AACCTAAACACGAATACTCATACTCA
66 CCAACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATGAAAC-AAACATGAATACTCATACTAA
* * * *
271725 TCCCCATT-TTTTCAGGAATAGGCACCATAAGCATTGTCTTCTCAATAGGGA-ATATGAT-TTGG
130 TCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAATA-GGATATATGATATTGG
* * * *
271787 TGCTTTGGTTTCACCAGAAAGGATTTTTCCCACAAATTTTCGTAAAG--T---TTCATGCCCCAA
194 TGCTTTGGTTTCACCAGAAAGGCTTTTTCCCATAAATTTTTGTAAAGTCTAAGTTCATGCCTCAA
* * * * *
271847 ATAAGACAAGCATAGATTCTAGTAATGATCTTCTTTCATTTTGTGATTAGGCACTATAAACACAT
259 ATGAGATAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
** * *
271912 TCTCCTCATTAATTTAAAAGATATTGATGATTTTGTTTTAACATGGTAATCTTTTCTTTGCCCTA
324 TCTCCTCATTAAGATAAAAGATATTGATGATTTT-CTTTAGCATGGTAATCTTTTCTTTGCCCTA
* * * *
271977 TTTTCCTA-AAAATCAAAGTTCATCCTTTAAATAAGATAAGCATCGATTCTCGTAGCAGTCTCCA
388 TTTT-CTACAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCTA
* *
272041 TTCTTTTCAACATTGGGAACCACA
452 TTCTTTTCAAGATTGGGAACCAAA
* * * * *
272065 AACGCATTTCCTTCATTACGATACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
1 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGTTGTCGCAAGAAAAGCTTTTCTTT
* * *
272130 CCAACCTTTTTGATAGAATCAAAGCTTGTCACTTAAATGAAACAAACATGAATACT-ATACTAAT
66 CCAACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATGAAACAAACATGAATACTCATACTAAT
** * *
272194 CCCCATTCTTTTCAAGA-TATGGCACCGGAAACATAGTCTTCTCAATAGGATATATGATAGTCGT
131 CCCCATTCTTTTCAAGATTA-GGCACCATAAACATAGTCTTCTCAATAGGATATATGATATTGGT
* * *
272258 GCTTTGGTTTCACCAAAAAGGCTTTTTCCCATAAATTTTTATAAAGTCTAAGTTCATGCCCCAAA
195 GCTTTGGTTTCACCAGAAAGGCTTTTTCCCATAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAA
* * * * * *
272323 TGAGATAAACTTGGATTCTAGTAGTGATCTTCAGTCAATTTGTGATTAGGCACTACAAACACGTT
260 TGAGATAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
** * * * *
272388 CTCCTTTTTAAGATAAGAGATATTGATGATTTTCTTTAGCATTGTATTCTTTTCTTTGCCTTATT
325 CTCCTCATTAAGATAAAAGATATTGATGATTTTCTTTAGCATGGTAATCTTTTCTTTGCCCTATT
* * *
272453 TTCTACAAAATCAAAGTTCATCCCTTAAATAAGACTAGCATCGATTCTCGTAACAGTCTTTATTT
390 TTCTACAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCTATTC
272518 TTTTCAAGATTGGGAACCAAA
455 TTTTCAAGATTGGGAACCAAA
** * * * * * * *
272539 AATGCATTCCCTTCATTAAGATGCACGACATTGTTGCTCTGTTGTCACAAAAAAAGCTTTTCTTT
1 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGTTGTCGCAAGAAAAGCTTTTCTTT
* * * ** *
272604 CCAACGTTTTTGATAGAATGAAAATTTGTCTCTTAAATGAGACAATGATGAATAGTCAT--T-AT
66 CCAACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATGAAACAAACATGAATACTCATACTAAT
** * * * * * * *
272666 CCCCATTCTTTTCTGGATTAGGCTCTATAAAAATAATATTCTCAATAGGATACACGATATTGGTG
131 CCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAATAGGATATATGATATTGGTG
* ** * * * * *
272731 CTTTGGCTTCACCAGAAAGGCTTTTTTGCACAAATTTTTGTAAAGTCCATGTTTAGGCCTCAAAT
196 CTTTGGTTTCACCAGAAAGGCTTTTTCCCATAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
* * * *
272796 GAGACAAACATGGAATCTAGCAATGATCTTCATTCATTTTGTGATTAGGTACTATAAACACATTC
261 GAGATAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* *
272861 TCCTCGTTAAGATAAAAGATATTGATGATTTTCTTTAGCATGGTAATCTTTCCTTTGCCCTATTT
326 TCCTCATTAAGATAAAAGATATTGATGATTTTCTTTAGCATGGTAATCTTTTCTTTGCCCTATTT
* * * * * * * *
272926 TCCT-CGAAATCAAGGTTCATCCGTTAAATAAGACAAGCGTTGATTGTCATAACAGTCTCCA-T-
391 T-CTACAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCTATTC
* *
272988 TATTC-----T------C-AT
455 TTTTCAAGATTGGGAACCAAA
* * * *
272997 AACACATTCCCTTCATTAGGATACGTGACATTGATGTTTTGGTGTCGCAAGAAAAGCTATTCTTT
1 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGTTGTCGCAAGAAAAGCTTTTCTTT
* *
273062 CCAAGGTTTTTGATAGAATCAAAGTTTGTCACTTAAAT-AAGACAAACAT-AATACTCATAACTA
66 CCAACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATGAA-ACAAACATGAATACTCAT-ACTA
* * * * *
273125 ATCCTCATGT-GTTT-AATGATTAGGCGCCATAAACGTAGTCTTCTCAATAGGATATATGATATC
129 ATCCCCAT-TCTTTTCAA-GATTAGGCACCATAAACATAGTCTTCTCAATAGGATATATGATATT
* ** * * *
273188 GGTGCTTTGGTGTGTCCAGAAAAGCTTTTTCCCGTAAATTTTTGTAAAGTCTAAGTTCAAGCCTC
192 GGTGCTTTGGTTTCACCAGAAAGGCTTTTTCCCATAAATTTTTGTAAAGTCTAAGTTCATGCCTC
* * * *
273253 AAATGAGATAAACATGGATTCTAGT-A--ATCTGCACTCGTTTTGTGCTTAGGCACTATAAACAC
257 AAATGAGATAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
* * * *
273315 ATTCTCCTCATTAAGATAAAAGATACTGATGATTTTCTTTAGCCTAGCAATCTTTTCTTTGCCCT
322 ATTCTCCTCATTAAGATAAAAGATATTGATGATTTTCTTTAGCATGGTAATCTTTTCTTTGCCCT
* * * * * *
273380 ATTTTCTGCAAAATCAAAGTTTATCCCTTAAATAAAACAAGCATAGATTCTCATAGCAGTCTCTA
387 ATTTTCTACAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCTA
* * *
273445 TTTTTTTTTAAGATT-TGAGACCAAA
452 -TTCTTTTCAAGATTGGGA-ACCAAA
* * * * ** * *
273470 AACACATT--C-TCA-TAGCAGTCTCATGACATTAACGCTTTGTTGTAACAGGAAAAGCTTTTTT
1 AACACATTCCCTTCATTAGGA-T-ACATGACATTGATGCTTTGTTGTCGCAAGAAAAGCTTTTCT
* * * * *
273531 TTCCAATG-TTTTGATAGAATCAAAGTTTATCTCTTAAGT-AAGACAAACACGAATACTCATACC
64 TTCCAACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATGAA-ACAAACATGAATACTCATACT
* * * * * *
273594 AATTCCTATTCTTTTCACA-ATTCGCCACCGTAAACATAGTCTTCTCAATAGGATATACGATATT
128 AATCCCCATTCTTTTCA-AGATTAGGCACCATAAACATAGTCTTCTCAATAGGATATATGATATT
*
273658 GGTGCTTTGGTTTCACCAGAATA-GCTTTTTCCCATAAATTTTTGTAAAGTCTAAGTTCATACCT
192 GGTGCTTTGGTTTCACCAGAA-AGGCTTTTTCCCATAAATTTTTGTAAAGTCTAAGTTCATGCCT
* ** * **
273722 CAAATAAGATAAACATGGATTCTAGTAATGATCTTCATTCATTTTGCAATTAGGCATTGCAAACA
256 CAAATGAGATAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
** * * * * *
273787 CATTCTCCTTTTTAAGAT-AAAGATATTGATGATTTTTTTTAGCATAGTATTATTTTCTTTGCCT
321 CATTCTCCTCATTAAGATAAAAGATATTGATGATTTTCTTTAGCATGGTAATCTTTTCTTTGCCC
* * ** *
273851 TATTTT-TCACAAAATCAAAGTTCAACCCTTAAATAAGACAAGCATTGATTCTCGTAGTAGTCCC
386 TATTTTCT-ACAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTC
* * *
273915 TATTTTTTTCAAG-CTAGGAACC-AA
450 TATTCTTTTCAAGATTGGGAACCAAA
* * * *
273939 AACACATTCCCTTAATTAGGATACAGGACATTGATGCTCTGTTGTCGCAAGAAAGGCTTTTCTTT
1 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGTTGTCGCAAGAAAAGCTTTTCTTT
* * * *
274004 CTAACGTTTTTGATAGAATCAAATTTTGTCTCTTAAATGAGACAAAAATGAATACTCATACTAA-
66 CCAACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATGAAACAAACATGAATACTCATACTAAT
274068 CCCCTATTCTTTT-AAGGATCT-GGCACCATAAAC--A-TCTTCTCAATAGGATATATGATATTG
131 CCCC-ATTCTTTTCAA-GAT-TAGGCACCATAAACATAGTCTTCTCAATAGGATATATGATATTG
* * ** *
274128 GTGCTTTGGTTTCATCAGAAAGGCTTTTTCTCATAAATTTCAGTAAAGTCTAAATTCATGCCTCA
193 GTGCTTTGGTTTCACCAGAAAGGCTTTTTCCCATAAATTTTTGTAAAGTCTAAGTTCATGCCTCA
* * * * *
274193 AATGAGATAAACATGGATTCTAGTAATGATCTTCTTTCATTTTCTGCTTAGCCTCTATAAACACA
258 AATGAGATAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
* * * * * ** * *
274258 TTCTCCTCATTAAGAGAAAGGATATTAATAATTCTCTTTAATATGGTAAT-TGTTTTTTTGTCCT
323 TTCTCCTCATTAAGATAAAAGATATTGATGATTTTCTTTAGCATGGTAATCT-TTTCTTTGCCCT
* * * * *
274322 ATTTTCCATAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGTTTCTCGTAAGAGCCTCTA
387 ATTTTCTACAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCTA
* *
274387 TTCTTTTTAAGAATGGGAACCAAA
452 TTCTTTTCAAGATTGGGAACCAAA
** * * *
274411 AACACATTCCCTTTTTTAGGATACATGACATTGATGCTTTTTTGTTGGAAGAAAAGCTTTTCTTT
1 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGTTGTCGCAAGAAAAGCTTTTCTTT
* * * * * *
274476 CTAATGTTTTTGATAGAGTCAAAGTTTGTCTCTTAAATAAAACAAAAATGAATAGTCATACTAAT
66 CCAACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATGAAACAAACATGAATACTCATACTAAT
* * * * * * * *
274541 CCCTATTCTTTTCAGGACTT-GGCACCATTAACATAGTCTTCCCAACAGGATACAAGCTATTGGT
131 CCCCATTCTTTTCAAGA-TTAGGCACCATAAACATAGTCTTCTCAATAGGATATATGATATTGGT
* * *
274605 GCTTTGGTTTTACTAGAAAGGCTTTTTCCCCA-AAATTTTTGTAAAGTCTAAGCTC-TGGCCTCA
195 GCTTTGGTTTCACCAGAAAGGCTTTTT-CCCATAAATTTTTGTAAAGTCTAAGTTCAT-GCCTCA
* * * *
274668 AGTGAGACAAACGTGGATTCTACTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
258 AATGAGATAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
* * *
274733 TTTTCCTTATTAAGAT-AAAGATATTGATGATTTTGTTTAGCATGGTAATCTTTTCTTTGCCCTA
323 TTCTCCTCATTAAGATAAAAGATATTGATGATTTTCTTTAGCATGGTAATCTTTTCTTTGCCCTA
* ** ** *
274797 TTTTCCT-CAAATTCAAAGTTCATCTGTTAAATAAGACAAGTGTCTATTCTCGTAACAGTCTCTA
388 TTTT-CTACAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCTA
274861 TTCTTTTCAAGATTGGGAACC-AA
452 TTCTTTTCAAGATTGGGAACCAAA
* * * * * * * *
274884 AATACATTCCCTTCATTAGGATGCATGGCATTGATGCTCTGGTGTCGTAAGAAAAACATTTCTTT
1 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGTTGTCGCAAGAAAAGCTTTTCTTT
* * * * * * *
274949 CCAACCTTTTCGATAGAATCAAAGTTTGTTTTTTAAAT-AAGACAAACACGAATACTCACACTCA
66 CCAACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATGAA-ACAAACATGAATACTCATACTAA
** * *
275013 TCCTAATT-TTTTCAGGATTAGGCACCATAAGCATAGTCTTCTCAATAGGGA-ATATGATATTGG
130 TCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAATA-GGATATATGATATTGG
* * *
275076 TGCTTTGGGTTCACCAGAAAGGATTTTTCCCACAAATTTTTGTAAAG--T---TTCATGCC-CTA
194 TGCTTTGGTTTCACCAGAAAGGCTTTTTCCCATAAATTTTTGTAAAGTCTAAGTTCATGCCTC-A
* * * * * *
275135 AATAAGACAAACGTAGATTCTAGTAATGATCATCTTTCATTTTGTGATTAGGCACTATAAACACA
258 AATGAGATAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
* *
275200 TTCTCCTCATTAACG-TAAAAGATATTGATGTTTTTGTTTAGCATGGTAATCTTTTCTTTGCCCT
323 TTCTCCTCATTAA-GATAAAAGATATTGATGATTTTCTTTAGCATGGTAATCTTTTCTTTGCCCT
* * * *
275264 ATTTTCCTA-AAAATCAAAGGTCATCCCTTAAATAAGATAAGCATCGATTCTCGTAGCAGTCTCC
387 ATTTT-CTACAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCT
* *
275328 ATTCTTTTCAACATTGGGAACCACA
451 ATTCTTTTCAAGATTGGGAACCAAA
* * *
275353 AACACATTCCCTTCATTAGGATGCACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
1 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGTTGTCGCAAGAAAAGCTTTTCTTT
* * * * * *
275418 CCAACCTTTTTGATAAAATCAAAGCTTGTCACTCAAATGAGACAAACATGAATACT-ATACTAAT
66 CCAACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATGAAACAAACATGAATACTCATACTAAT
* * *
275482 CCCCATTCTTTTCAAGATCT-GGCACCATAAACATAGTCTTCTTAATAGGATATAAGATATTCGT
131 CCCCATTCTTTTCAAGAT-TAGGCACCATAAACATAGTCTTCTCAATAGGATATATGATATTGGT
* * * *
275546 GCATTGGTTTCACCAAAAAGGCTTTTTCCCATAAATTTTTATAGAGTCTAAGTTCATGCC-CTAA
195 GCTTTGGTTTCACCAGAAAGGCTTTTTCCCATAAATTTTTGTAAAGTCTAAGTTCATGCCTC-AA
* * * *
275610 ATGAGATAAACATGGATTCTAGTAATTATCTTCAGTCAATTTGTGATTAGGCACTACAAACACAT
259 ATGAGATAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
** * * *
275675 TCTCCTTTTTAAGATAAAAGATATTGATGATTTTCTTTAGCATTGTATTCTTTTCTTTGCCTTAT
324 TCTCCTCATTAAGATAAAAGATATTGATGATTTTCTTTAGCATGGTAATCTTTTCTTTGCCCTAT
* * * *
275740 TTTCTACAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTTGTAGCAGTCTTTATT
389 TTTCTACAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCTATT
275805 CTTTTCAAGATTGGGAACCAAA
454 CTTTTCAAGATTGGGAACCAAA
** * * ** * *
275827 AATGCATTCCCTTCATTAGGATACACGACATTGTTGCTCAGTTGTCACAAAAAAAGCTTTTCTTT
1 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGTTGTCGCAAGAAAAGCTTTTCTTT
* * * **
275892 CCAACGTTTTTGATAGAATGAAAATTTGTCTCTTAAATGAGACAAAGTTGAATA--C-T-C--AT
66 CCAACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATGAAACAAACATGAATACTCATACTAAT
* ** * * * * *
275951 -----TTC---T--AGATTAGGCTCTGTAAAAATAGTATTCTCAATAGGATACACGATATTGGTA
131 CCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAATAGGATATATGATATTGGTG
* * * * * * *
276006 CTTTGGCTTCACCAGAAAGGCTTTTTCGCACAAGTTTTTGTAAAGTCCATGTTCAGGCCTCAAAT
196 CTTTGGTTTCACCAGAAAGGCTTTTTCCCATAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
* * * *
276071 GAGACAAACATGGAATCTAGTAATGATCTTCATTCATTTTGTGCTTAGGTACTATAAACACATTC
261 GAGATAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * *
276136 TCCTCGTTAAGATAAAAGATATTGATGATTTTCTTTAGCCTGGTAATCTTTCCTTTGCCCTATTT
326 TCCTCATTAAGATAAAAGATATTGATGATTTTCTTTAGCATGGTAATCTTTTCTTTGCCCTATTT
* * ** * * * *
276201 TTTGCAAAATCAAAGTTTGTCCCTTAAATAAAACAAGCATCGATTCTCATAGCAGTCTCTATTTT
391 TCTACAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCTATTCT
*
276266 TTTTAAGATT-GGAGACCAAA
456 TTTCAAGATTGGGA-ACCAAA
* * * * *** *
276286 AACACATTCCTTTCGTTAAGATACATGACGTTGATGCTTTGTTGTAATAGGAAAAGCTTTTCTTT
1 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGTTGTCGCAAGAAAAGCTTTTCTTT
* *
276351 CCAATG-TTTTGATAGAATCAAAGTTTGTCTC-TAAA-GTAAGACAAACACGAATACTCATACTA
66 CCAACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATG-AA-ACAAACATGAATACTCATACTA
* * *
276413 ATCCCCATTCTTTTCAGGATTAGCCACCATAAACATAGTCTTCTCAATGGGATATATGATATTGG
129 ATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAATAGGATATATGATATTGG
* * * * *
276478 TGCTTTGATTTCACCA-AAACGGCTTTTTCTCACAAATTTTTGTAAAGTCTAAGTTCATACCTCT
194 TGCTTTGGTTTCACCAGAAA-GGCTTTTTCCCATAAATTTTTGTAAAGTCTAAGTTCATGCCTCA
* * * **
276542 AATTAGATAAACATGGATTCTAGTAATGATCTTCATTCATTTTGCGATTAGGCATTGGAAACACA
258 AATGAGATAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
** * * * * * *
276607 TTCTCCTTTTTAAGATAAAAGATATTAATGACTTTTTTTTTAGCATTGTATTATTTTCTTTGCCT
323 TTCTCCTCATTAAGATAAAAGATATTGATGA--TTTTCTTTAGCATGGTAATCTTTTCTTTGCCC
* * * *
276672 TATTTT-TCACAAAATCAAAGTTCAACCCTTAAATAAGACAAGCATTGATTCTCGTAATAGTCCC
386 TATTTTCT-ACAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTC
*
276736 TATTCTTTTCAAG-CTGGGAACCAAA
450 TATTCTTTTCAAGATTGGGAACCAAA
* * *
276761 AACACATTCCCTTCATTAGGATACAGGACATTGATGCTCTGTTGTCGCAAAAAAAGCTTTTCTTT
1 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGTTGTCGCAAGAAAAGCTTTTCTTT
* * * * * * *
276826 CTAACGTTTTTGATAGAATCCAATTTTGTCTCTTAAATGAGACAAAAACGAATACTCATACGAA-
66 CCAACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATGAAACAAACATGAATACTCATACTAAT
**
276890 CCCCTATTCTTTT-AAGGATCCGGCACCATAAAC--A-TCTTCTCAATAGGATATATGATATTGG
131 CCCC-ATTCTTTTCAA-GATTAGGCACCATAAACATAGTCTTCTCAATAGGATATATGATATTGG
* * * **
276951 TGTTTTGGTTTCACTAGAAAGGCTTTTTCTCATAAATTTCAGTAAAGTCTGAA-TTCATGCCTCA
194 TGCTTTGGTTTCACCAGAAAGGCTTTTTCCCATAAATTTTTGTAAAGTCT-AAGTTCATGCCTCA
* * * *
277015 AATGAGATAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATGCTTAGGCTCTATAAACACA
258 AATGAGATAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
* * ** * ** *
277080 TTTTCCTCATTAAGATAAAAGATATTAAAAATTCTCTTTAATATGGTAAT-TGTTTCTTTGTCCT
323 TTCTCCTCATTAAGATAAAAGATATTGATGATTTTCTTTAGCATGGTAATCT-TTTCTTTGCCCT
* * * * *
277144 ATTTTCCACAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAATAGCCTTTA
387 ATTTTCTACAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCTA
*
277209 TTCTTTTTAAGATTGGGAACCAAA
452 TTCTTTTCAAGATTGGGAACCAAA
* * *
277233 AACACATTCCCTTCATTAGGATACATGACAATGATGCTTTGCTATCGCAAGAAAAGCTTTTCTTT
1 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGTTGTCGCAAGAAAAGCTTTTCTTT
* * * * * * *
277298 CTAACATTTTTTATAGAGTCAAAGTTTGTCTCTTAAATAAAACAAAAATGAATAGTCATACTAAT
66 CCAACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATGAAACAAACATGAATACTCATACTAAT
* * * * * * * * *
277363 CCCTATTCTTTTCAGGATTTGACACCTTTAACATAGTCTTCTCAATAGGACACAAGATATTGGTG
131 CCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAATAGGATATATGATATTGGTG
* * *
277428 CTTTGGTTTCACCAGAAAGGCTTTTTCCCCA-AAATTTTTGTAAAGTATAAGTTTATGCCTCAAG
196 CTTTGGTTTCACCAGAAAGGCTTTTT-CCCATAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAA
* * * *
277492 GGAGAGAAACATGGATTCTACTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACATATT
260 TGAGATAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
*
277557 CTCCTCATTAAGATAAAAGATATTGATGATTTTCTTTAGCATGGTAATCTTTTCTTTACCCTATT
325 CTCCTCATTAAGATAAAAGATATTGATGATTTTCTTTAGCATGGTAATCTTTTCTTTGCCCTATT
* **
277622 TTCCT-CAAAATCAATGTTCATCTATTAAAT-A-ACAAGCATCGATTCTCGTAACAGTCTCTATT
390 TT-CTACAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCTATT
277684 CTTTTCAAGATTGGGAACCAAA
454 CTTTTCAAGATTGGGAACCAAA
* * * ** * * *
277706 CACACATTCCCTTCATTAGGATGCATGGCATTGATGCTTTAATGTTGTAAGAAAAGCATTTCTTT
1 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGTTGTCGCAAGAAAAGCTTTTCTTT
* * * * * *
277771 CCAACCTTTTTGATAGAATCAACGTTTATCTTTTAAAT-AAGACAAACACGAATACTCATACCAA
66 CCAACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATGAA-ACAAACATGAATACTCATACTAA
* * * *
277835 TCCCTATT-TTTCTCAAGATTAGGCACCATAAACATAGTGTTCTTAAAAAGGA-ATATGATATTG
130 TCCCCATTCTTT-TCAAGATTAGGCACCATAAACATAGTCTTC-TCAATAGGATATATGATATTG
* * * * *
277898 GTGCTTTGGTTTCACCAGAAAGGATTTTTCCCACAAATTTTTGTTAAG--T---TTCAAGCCCCA
193 GTGCTTTGGTTTCACCAGAAAGGCTTTTTCCCATAAATTTTTGTAAAGTCTAAGTTCATGCCTCA
* * * * * **
277958 AATGAGACAAACATAGATTATAGAAATAATCTTCCCTCATTTTGTGATTAGGCACTATAAACACA
258 AATGAGATAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
** * * * *
278023 TTCTCCTCATTAATTTAAAAGATATTGATGATTTTGTCTAGCACGGTAATCTTTTCTTTGCCTTA
323 TTCTCCTCATTAAGATAAAAGATATTGATGATTTTCTTTAGCATGGTAATCTTTTCTTTGCCCTA
* * *
278088 TTTTCCT-GAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCA
388 TTTT-CTACAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCTA
* * *
278152 TTCTTTTCAACATTAGGAACCACA
452 TTCTTTTCAAGATTGGGAACCAAA
* ** * *
278176 AACACATTCCCTTCCTTAGGATACACAACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTT
1 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGTTGTCGCAAGAAAAGCTTTTCTTT
* * * * * * *
278241 CTAACATTTTTGATAAAATCAAAGCTTGTCACTTAAACGACACAAACATGAATACT-ATACTAAT
66 CCAACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATGAAACAAACATGAATACTCATACTAAT
*
278305 CCCCATTCTTTTCAAGATCT-GGCACCATAAACATAGTCTTCTCAATAGGATATATGATATTCGT
131 CCCCATTCTTTTCAAGAT-TAGGCACCATAAACATAGTCTTCTCAATAGGATATATGATATTGGT
* * *
278369 ACTTTGGTTTCACTAGAAAGGCTTTTTCCCATAAATTTTTGTAAAGTCTAAGTTTATGCCTCAAA
195 GCTTTGGTTTCACCAGAAAGGCTTTTTCCCATAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAA
* *
278434 TGAGAT--AC----A--C-A-T--GGA--TTC--T-A----GT-A--AGGCACTACAAACACATT
260 TGAGATAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* * * *
278475 CTCCTCGTTAAAATAAAAGATATTGATGATTTTCTTTAACATGGTAATCTTTCCTTTGCCCTATT
325 CTCCTCATTAAGATAAAAGATATTGATGATTTTCTTTAGCATGGTAATCTTTTCTTTGCCCTATT
* * **
278540 TTCCT-CAAAATCAATGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACACCCTCTATT
390 TT-CTACAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCTATT
* *
278604 CTTTTCAAAATTAGGAACCAAA
454 CTTTTCAAGATTGGGAACCAAA
** * * * *
278626 AATGCATTCCCTTCATTAGGATACATGACATTGACGCTTTATTGTCACAAGAAAAGCTTTTTTTT
1 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGTTGTCGCAAGAAAAGCTTTTCTTT
* * * * * * * * * *
278691 CGAACGTTTTTGATAAAAGCAAAATTGGTCTATAAAAT-AAGACAAACCTGAATACTTATACTTA
66 CCAACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATGAA-ACAAACATGAATACTCATACTAA
* ** ** * * * * *
278755 TCCACATTCTTTTCGGGATTAGGCACTGTAAA-ATAGTCTTCTTAGTAGGATACACGATATTTGT
130 TCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAATAGGATATATGATATTGGT
* * * * * * * * *
278819 GCTTTAGCTTCACCAAAAAGGCTTTTTCGCACAAATTTTTGTAAAGTAC-ATGATCAGGACTCAA
195 GCTTTGGTTTCACCAGAAAGGCTTTTTCCCATAAATTTTTGTAAAGT-CTAAGTTCATGCCTCAA
* * * *
278883 ATGAGACAAACATGGAATCTAGCAATGATCTTCATTCATTTTGTGATTAGGCAGTATAAACACAT
259 ATGAGATAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
* ** *
278948 TCTCCTCGTTATA-ATAAAAGATATTGATGATTTTCTTTAATATGGTAATCTTTTCTTTACCCTA
324 TCTCCTCATTA-AGATAAAAGATATTGATGATTTTCTTTAGCATGGTAATCTTTTCTTTGCCCTA
** * * * * * * * *
279012 TTTTCCGCAAAATCAAGGTTCATCCCTTGAATAATACCAGCATTGATTCTCATAACAATCTCCAT
388 TTTTCTACAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCTAT
279077 TCTTTTCAAGATTGGGAACCAAA
453 TCTTTTCAAGATTGGGAACCAAA
* * * * * *
279100 AACACATTCCCTTTATTAGGATGCAT-AGCATTGATGCTTTGATATCGTAAGAAAAGCATTTCTT
1 AACACATTCCCTTCATTAGGATACATGA-CATTGATGCTTTGTTGTCGCAAGAAAAGCTTTTCTT
* * * *
279164 TCCAACCTGTTTGATAGAATTAAAGTTTGTCTTTTAAAT-AAGACAAACATGAATACTCATACTA
65 TCCAACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATGAA-ACAAACATGAATACTCATACTA
* * * * * *
279228 TTCCCCATTTTTTTCATGATTATGCACCATAAGCATAGTCTTCTCAGTAGGGA-ATATGATATTG
129 ATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAATA-GGATATATGATATTG
* * * * *
279292 GTGCTTTGGTTTCACCATAAAGGATTTTTCCTACAAATTTTTGTAAAG--T---TTCATGCCCCA
193 GTGCTTTGGTTTCACCAGAAAGGCTTTTTCCCATAAATTTTTGTAAAGTCTAAGTTCATGCCTCA
* * * * *
279352 AATGAGACAAACATAGATTCTAGTAATGATCTTCCTTCATTTTGTTATTAGGCACTATAAACATA
258 AATGAGATAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
** ** *
279417 TTCTCCTCATTAACG-TAAAAGATATTGATGATTTTGGTTAGCATGACAATTTTTTCTTTGCCCT
323 TTCTCCTCATTAA-GATAAAAGATATTGATGATTTTCTTTAGCATGGTAATCTTTTCTTTGCCCT
* * * *
279481 ATTTTCCTA-AAAATCAAAGTTCATCCCTTAAAAAAGATAAGCATCGATTCTCGTAATAGTCTCC
387 ATTTT-CTACAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCT
279545 ATTCTTTTCAA
451 ATTCTTTTCAA
279556 TAGTCTCCTA
Statistics
Matches: 8264, Mismatches: 1353, Indels: 474
0.82 0.13 0.05
Matches are distributed among these distances:
449 1 0.00
450 334 0.04
451 32 0.00
452 3 0.00
453 2 0.00
456 2 0.00
457 17 0.00
458 274 0.03
459 334 0.04
460 8 0.00
461 126 0.02
462 5 0.00
464 8 0.00
465 2 0.00
466 3 0.00
467 78 0.01
468 406 0.05
469 694 0.08
470 811 0.10
471 405 0.05
472 1418 0.17
473 717 0.09
474 1321 0.16
475 998 0.12
476 259 0.03
477 5 0.00
478 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (475 bp):
AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGTTGTCGCAAGAAAAGCTTTTCTTT
CCAACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATGAAACAAACATGAATACTCATACTAAT
CCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAATAGGATATATGATATTGGTG
CTTTGGTTTCACCAGAAAGGCTTTTTCCCATAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
GAGATAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
TCCTCATTAAGATAAAAGATATTGATGATTTTCTTTAGCATGGTAATCTTTTCTTTGCCCTATTT
TCTACAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCTATTCT
TTTCAAGATTGGGAACCAAA
Found at i:289896 original size:476 final size:474
Alignment explanation
Indices: 287774--290359 Score: 2893
Period size: 476 Copynumber: 5.4 Consensus size: 474
287764 TCAAGATTGG
* * *
287774 GAATACATGACATTGATGCTTTGCTATCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTGATAGAA
1 GAATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTTATAGAA
* * * *
287839 TCAAAGTTTGTCTCTTAAATGAGACAAAAATGAATACTCATGCTAATCCCCATTCTTTTTAGGAT
66 TCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAAT-CCCATTCTTTTCAGGAT
* * ** *
287904 TACGG-ACCATAAAAATAGTCTTCTCAATAGGATACACGATATTGGCACTTTGGCTTCACTAGAA
130 TA-GGCACCATAAACATAGTCTTCTCAATAGGATACAAGATATTGGTGCTTTGGTTTCACTAGAA
* * * * * *
287968 AGGCTTTCTCCCACAAATTTTTGTAAAGTCCATGTTCAGGCCTCAAGTGAGACAAACAT-GAAAT
194 AGGCTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATAG-ATT
* *
288032 CTAGCAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAGACATTCTCCTTATTAAGATAAA
258 CTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAAGATAAA
* * *
288097 AGT-TATTGATGATGTTCTTTATCATAGTAATCTTTTCTTTGCCCTATTTTCCTCAAAATCAAAG
323 A-TATATTGATGATTTTCTTTAGCATGGTAATCTTTTCTTTGCCCTATTTTCCTCAAAATCAAAG
* * * * * * *
288161 TTCATCCCTTAAAAAAGACAAGTATCGATTCTCGTAACAGACCCTATTCTTTTCAAGGTTTGGAA
387 TTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCTATTCTTTTCAAGATTGGGAA
*
288226 CCAAAAACACATTCCCTGCATTA
452 CCAAAAACACATTCCCTTCATTA
* * * * *
288249 GGATGCATGACATTGATACTTAGGGGTTTAGTGTGCTTTGGGGTCACAGGAAATGCTTTTCTTTC
1 -GA---AT-ACA-TG--AC--A-----TT-G-ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
* ** * * *
288314 CATCGTTTTTTATAGAATCAAAGTTTGTCTCTCGAATAAGACAAACAAGAATAGTTATACTAATC
49 CAACGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATC
* * * * * * * * *
288379 CCAAGTCTTTTCAGGATTAGGCACCATTAACATAGCCTTTTC-ATAAGGACATATGAAATTGATG
114 CC-ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAAT-AGGATACAAGATATTGGTG
* * * * * * *
288443 CTTTGGTTTCGA-AAGAAAGGTTTTCTTCCCTCCAGTTTTTGTAGAGTCTAAGTTCGTGCCTCAA
177 CTTTGGTTTC-ACTAGAAAGGCTTT-TTCCCACAAATTTTTGTAAAGTCTAAGTTCATGCCTCAA
* * *
288507 ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTT-TGGATTACGC-GTGATAAACAC
240 ATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGT-GATTAGGCACT-ATAAACAC
* * *
288570 ATTCTCCTTGTTAAGAT-AAATGATATTAATGATTTTCTTTTGCATGGTAATCTTTTCTTTGCCC
303 ATTCTCCTTATTAAGATAAAAT-ATATTGATGATTTTCTTTAGCATGGTAATCTTTTCTTTGCCC
* * * ** ** *
288634 TAGTTTCCACAAAATGAAAGTTCATCCCTTAAATAAGACAAGTTTTTATTCTCATAGA-AGGCTC
367 TATTTTCCTCAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATA-ACAGTCTC
**
288698 TATTCTTTTCAAGATTGGGAACCAAAAATGCATTCCCTTCATTA
431 TATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTA
* * * * *
288742 GGATACATGACATTGATGCTTTGTTGTCGTAAGAAAAGCTTTTCTTTCTAACGTTTTTTGTAGAA
1 GAATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTTATAGAA
* * *
288807 TCAAAATTTGTCTTTTAAATAAGACAAACATGAATACTCATACTAATCCCATTCTTTTTAGGATT
66 TCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCATTCTTTTCAGGATT
*
288872 AGGCACCATAAACATAGTTTTCTCAATAGGATACAAGATATTGGTGCTTTGGTTTCACTAGAAAG
131 AGGCACCATAAACATAGTCTTCTCAATAGGATACAAGATATTGGTGCTTTGGTTTCACTAGAAAG
* * * *
288937 GCCTTTTCCCACAAATATTTGTAAAGTCTAAGTTCATGCCTCAAACGAGACAAACATAGACTCTA
196 GCTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATAGATTCTA
* * * * *
289002 GTAATAATCTTCATTCATTTTATGATTACGTACTATAAACACATTCTCCTCATTAAGATAAAATA
261 GTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAAGATAAAATA
* * * *
289067 TATTGATGATTTTATTTAGCGTGGTGATCATTTCTTTGCCCTATTTTCCTCAAAATCAAAGTTCA
326 TATTGATGATTTTCTTTAGCATGGTAATCTTTTCTTTGCCCTATTTTCCTCAAAATCAAAGTTCA
* * * * * *
289132 TCCCATAAATAAGACAAACATTGATTCTCATAATAGTCTCCATTATTTTC---A-T---------
391 TCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCTATTCTTTTCAAGATTGGGAACCAA
289184 -AACACATTCCCTTCATTA
456 AAACACATTCCCTTCATTA
* * *
289202 GGATACATGACATTGATGTTTTGGTGTCGCTAGAAAAGCTTTTCTTTCCAAC-TTTTTTGATAGA
1 GAATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTT-ATAGA
* * * * *
289266 ATCAAAGTTTGT-TACTTAAATAAGACAAATATGAATGCTCTTATTAATCCCCATTCTTTTTAGG
65 ATCAAAGTTTGTCT-CTTAAATAAGACAAACATGAATACTCATACTAAT-CCCATTCTTTTCAGG
* * * * *
289330 ATTAGGCATCATAAACAT-GTTCTTCTTAATAGGATATATA-ATATTGGTG-TGTTCGTTTCACC
128 ATTAGGCACCATAAACATAG-TCTTCTCAATAGGATACA-AGATATTGGTGCT-TTGGTTTCACT
* * * * *
289392 AAAAAAGCTTTTTCCCACAAAATTTTGTAAAGTCTAAGTTCATACCTCAAATGAGAAAAACATAG
190 AGAAAGGCTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATAG
*
289457 ATTCTAGTAATGATCTTCATTCATTTTGTGCA-TAGGCACTATAAATACATTCTCCTTATTAAGA
255 ATTCTAGTAATGATCTTCATTCATTTTGTG-ATTAGGCACTATAAACACATTCTCCTTATTAAGA
* *
289521 TAAAATATATTGATGATTTTCTTTAACATGGTAATCCTTTCTTTGCCCTATTTT-CTACAAAATC
319 TAAAATATATTGATGATTTTCTTTAGCATGGTAATCTTTTCTTTGCCCTATTTTCCT-CAAAATC
* * * *
289585 AAAGTTGATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTTTATTTTTTTTCAAGATT
383 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCTA-TTCTTTTCAAGATT
*
289650 GGGAACCAAAAACACATTCCCTTCATCA
447 GGGAACCAAAAACACATTCCCTTCATTA
* * * *
289678 GAATACATGACATTGATGCTTTGTTGTCACAAGAAAAGCTTTTTTTTCTAACGTTTTTTATAGAA
1 GAATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTTATAGAA
* *
289743 TCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACTAATCCTCATTCTTTTCCGGAT
66 TCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCC-CATTCTTTTCAGGAT
289808 TAGGCACCATAAACATAGTCTTCTCAATAGGATACAAGATATTGGTGCTTTGGTTTCACTAGAAA
130 TAGGCACCATAAACATAGTCTTCTCAATAGGATACAAGATATTGGTGCTTTGGTTTCACTAGAAA
* * * * **
289873 GGCTTTTTCCCATAAATTTTTGTAAAGTCTAAGCTCATGCCACAAATGAGACAAATAGGGATTCT
195 GGCTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATAGATTCT
**** * * *
289938 AGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAGTGTATTCTGCTCATTAAGATAAAAG
260 AGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAAGATAAAAT
* * *
290003 ATATAGATGATTTTATTTAGCATGGTAAGT-TTTTCTTTGCCCTATTTTCCTCAAAACCAAAGTT
325 ATATTGATGATTTTCTTTAGCATGGTAA-TCTTTTCTTTGCCCTATTTTCCTCAAAATCAAAGTT
* * * * * *
290067 CATCCCTTAAATAAGACAAGCATCAATTCCCATAATAGTCTCTATTCTTTTCAAGGTTTGGAACT
389 CATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCTATTCTTTTCAAGATTGGGAACC
290132 AAAAACACATTCCCTTCATTA
454 AAAAACACATTCCCTTCATTA
* ** * *** * * *
290153 GGATGTATGACATTGATGCTTTGG-GCTTGGGGGAAATGCTTTTCTTTCC-TCTGTTTTTGATAG
1 GAATACATGACATTGATGCTTTGGTG-TCGCAAGAAAAGCTTTTCTTTCCAAC-GTTTTTTATAG
* * * * * *
290216 AATCAATGCTTGTCTCTTAAATAAGATAAACAAGAATAGTCATACTAATACCGATTCTTTTCAGG
64 AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAAT-CCCATTCTTTTCAGG
* * * * * * * *
290281 ATTAGGCACCATTAACATAGTTTTCT-GATAAAGATACACGATACTGATGCTTTGGTTTTCA-AA
128 ATTAGGCACCATAAACATAGTCTTCTCAAT-AGGATACAAGATATTGGTGCTTTGG-TTTCACTA
290344 GAAAGGCTTTCTTCCC
191 GAAAGGCTTT-TTCCC
290360 TCCACAGTAA
Statistics
Matches: 1775, Mismatches: 264, Indels: 142
0.81 0.12 0.07
Matches are distributed among these distances:
459 7 0.00
460 111 0.06
461 275 0.15
462 9 0.01
465 1 0.00
466 1 0.00
470 1 0.00
471 1 0.00
473 1 0.00
474 203 0.11
475 268 0.15
476 477 0.27
477 13 0.01
478 2 0.00
479 2 0.00
480 3 0.00
481 2 0.00
483 3 0.00
485 3 0.00
487 2 0.00
488 3 0.00
489 2 0.00
490 2 0.00
491 9 0.01
492 147 0.08
493 225 0.13
494 2 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (474 bp):
GAATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTTTATAGAA
TCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCATTCTTTTCAGGATT
AGGCACCATAAACATAGTCTTCTCAATAGGATACAAGATATTGGTGCTTTGGTTTCACTAGAAAG
GCTTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATAGATTCTA
GTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAAGATAAAATA
TATTGATGATTTTCTTTAGCATGGTAATCTTTTCTTTGCCCTATTTTCCTCAAAATCAAAGTTCA
TCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCTATTCTTTTCAAGATTGGGAACCAA
AAACACATTCCCTTCATTA
Found at i:291554 original size:475 final size:475
Alignment explanation
Indices: 290662--292483 Score: 2168
Period size: 475 Copynumber: 3.8 Consensus size: 475
290652 CTCCTACCTA
* * *
290662 AAATAAGCCAAACATGGATTCTAGTAATGATCTTCATTTATTCTATGATTTGGCACTATAAACAT
1 AAATGAGCCAAACATGGATTCTAGTAATGATCTTCATTTATTCTATGATTAGGCACTATAAACAC
* * * * * *
290727 ATTTTCCTCATAAGGATAAATGATATAGATGATTTTCTTTTGCAAGGAAATCATTTCTTTGCCCT
66 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTCTGCATGAAAATCATTTCTTTGCCCT
* * * * *
290792 ATTATCCTTAAATTCAAAGTTCATCCCTTAAATAAGATAAGCATCAATTCTTGTAACAGTCTCCA
131 ATTTTCCTTAAAATCAAAGTTAATCCCATAAATAAGATAAGCATCGATTCTTGTAACAGTCTCCA
* * *
290857 GTT-TTTTCAAGATTGGGAACCAATAACACATTCTCTTTATTAGGATACATGATATTGATGCTTT
196 -TTCTTTTCAAGATTGGGAACCAATAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
* * * *
290921 GGGGTCGTAAG-AATTCTTTTATTTCCACCGTTTTTGAGAGAATCAAAGTTTGTCTCTTAAATAA
260 GGGGTCGTAAGAAATGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * * *
290985 GACATACATGAATAGTCATACAAAT-CCCAGTTCTTTT-TAGCATTAGGCACC-ATAAACATAGT
325 GACAAACATGAATAGTCATACTAATCCCCA-TTCTTTTAT-GGATTAGGC-CCAATAAATATAGT
* ** *
291047 CTTCTCATAAGGATACATGATATTGTTGCTTTGGCCTCGAAACGAAGGCTTTCTTCCCCCCAATT
387 CTT-TCATAAGGATACATGATATTGATGCTTTGGTTTCGAAACGAAGGCTTTCTTCCCCTCAATT
291112 TTTGTAAAGTCTAAGTTCGTGCCTT
451 TTTGTAAAGTCTAAGTTCGTGCCTT
* * * * *
291137 AAGTGAGCCGAACATGGATTCTAGTAATGATCTTCATTTTTTTTGTGATTAGGCACTATAAACAC
1 AAATGAGCCAAACATGGATTCTAGTAATGATCTTCATTTATTCTATGATTAGGCACTATAAACAC
* * *
291202 ATTCCCCTCATTACGATAAATGATATTGATGATTTTCTTCGGCATGAAAATCATTTCTTTGCCCT
66 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTCTGCATGAAAATCATTTCTTTGCCCT
* * * * * *
291267 ATTTTCTTTAAAATCAAAGTTAATCACACAAATGAGATAGGCATCGATTCTTGTAACAGTCTCTA
131 ATTTTCCTTAAAATCAAAGTTAATCCCATAAATAAGATAAGCATCGATTCTTGTAACAGTCTCCA
*
291332 TTTCTTTT-AAGATTGGGAACCAATAACACATTCCTTTTCATTAGGATACATGACATTGATGCTT
196 -TTCTTTTCAAGATTGGGAACCAATAACACATTCC-CTTCATTAGGATACATGACATTGATGCTT
* *
291396 TGGGGTCGTAAGAAATGCTTTTCTTTTCACCATTTTTGATAGAATCAAAGTTTGTCACTTAAATA
259 TGGGGTCGTAAGAAATGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * *
291461 AGACAAACGTAAATAGTCATACTAATCCCCATTCTTTTATGGATTAGGCCCAAAAAATATAGTC-
324 AGACAAACATGAATAGTCATACTAATCCCCATTCTTTTATGGATTAGGCCCAATAAATATAGTCT
* * * * * * * *
291525 TTCAGAAGAATACGTGATACTGATGCTTTGGTTTC-AAAGGAAAGCCTTTCTTCCCCTTATTTTT
389 TTCATAAGGATACATGATATTGATGCTTTGGTTTCGAAACG-AAGGCTTTCTTCCCCTCAATTTT
* * *
291589 TGTGAAGTCTAAGTTCGCGCCTC
453 TGTAAAGTCTAAGTTCGTGCCTT
* * * * * * *
291612 AAATGAGACAAACGTAGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
1 AAATGAGCCAAACATGGATTCTAGTAATGATCTTCATTTATTCTATGATTAGGCACTATAAACAC
* * ** * * * *
291677 ATTCTTCTCATCAGGATAAATGATATTGATTTTTTTCTTTTGCGT-AGGAATCTTTTCTTTGCCC
66 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTCTGCATGA-AAATCATTTCTTTGCCC
* * * * * ** *
291741 TATTTTCGTCAAAATCAGAGTTCAA-CTCTTAAATAAGATAAGCATCGATTCTCATAACAGTCTT
130 TATTTTCCTTAAAATCAAAGTT-AATCCCATAAATAAGATAAGCATCGATTCTTGTAACAGTCTC
* * *
291805 TATTCTTTTGAAGATTGGGAACCAA-AATCACATTCCCTTCATTAGGATACATGACATTCATGCT
194 CATTCTTTTCAAGATTGGGAACCAATAA-CACATTCCCTTCATTAGGATACATGACATTGATGCT
* * *
291869 TTAGGGTCGCAAGAAACGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
258 TTGGGGTCGTAAGAAATGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * * * *
291934 AGGAGAAACATGAATAGTCATACTATTCCCCATTCTGTTTA-GGACT-GG-ACATCATAAATAGA
323 AAGACAAACATGAATAGTCATACTAATCCCCATTCT-TTTATGGATTAGGCCCA--ATAAATATA
* * * ** *
291996 GTCTTTTCATAAGGATACACGATATTGAGGCTTTGGTTTTGAAATAAAGGCTTTCTTGCCCTCAA
385 GTC-TTTCATAAGGATACATGATATTGATGCTTTGGTTTCGAAACGAAGGCTTTCTTCCCCTCAA
* *
292061 TTTTTGTAAAGTCTACGTTTC-TGCTTT
449 TTTTTGTAAAGTCTAAG-TTCGTGCCTT
* * *
292088 AAATAAGCCAAACAAGGATTCTAGTAATCATCTTCATTTATTCTATGATTAGGCACTATAAACAC
1 AAATGAGCCAAACATGGATTCTAGTAATGATCTTCATTTATTCTATGATTAGGCACTATAAACAC
* * * * *
292153 ATTCTCCTCATTAGGATAATTGATAGTGATGATTTTTTTCTACATGAAAATCATTTCTTTACCCT
66 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTCTGCATGAAAATCATTTCTTTGCCCT
* * *
292218 ATTTTCCTTCAAATCAAAGTTCATCCCATAAATAAGACAAGCATCGATTCTTGTAACAGTCTCCA
131 ATTTTCCTTAAAATCAAAGTTAATCCCATAAATAAGATAAGCATCGATTCTTGTAACAGTCTCCA
* * * * * *
292283 TTCTTTTCAAAATTGGGAACCAATAACAGATTCCCTTCATTAGGATACATGAAAATAATTCTTTG
196 TTCTTTTCAAGATTGGGAACCAATAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTG
* * * * *
292348 GGGTCG-CAGGAATGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTTTCTTAAATAAG
261 GGGTCGTAAGAAATGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* * * ** *
292412 ACAAACATTAATAGTCATACTAATCCCAATTCCTTTCA-ACATTAGGCACC-ATAAACATAGTCT
326 ACAAACATGAATAGTCATACTAATCCCCATT-CTTTTATGGATTAGGC-CCAATAAATATAGTCT
292475 TCTCATAAG
389 T-TCATAAG
292484 TGTTAGGATC
Statistics
Matches: 1135, Mismatches: 186, Indels: 52
0.83 0.14 0.04
Matches are distributed among these distances:
472 2 0.00
473 2 0.00
474 147 0.13
475 548 0.48
476 328 0.29
477 102 0.09
478 6 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (475 bp):
AAATGAGCCAAACATGGATTCTAGTAATGATCTTCATTTATTCTATGATTAGGCACTATAAACAC
ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTCTGCATGAAAATCATTTCTTTGCCCT
ATTTTCCTTAAAATCAAAGTTAATCCCATAAATAAGATAAGCATCGATTCTTGTAACAGTCTCCA
TTCTTTTCAAGATTGGGAACCAATAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTG
GGGTCGTAAGAAATGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
ACAAACATGAATAGTCATACTAATCCCCATTCTTTTATGGATTAGGCCCAATAAATATAGTCTTT
CATAAGGATACATGATATTGATGCTTTGGTTTCGAAACGAAGGCTTTCTTCCCCTCAATTTTTGT
AAAGTCTAAGTTCGTGCCTT
Found at i:292807 original size:13 final size:13
Alignment explanation
Indices: 292789--292815 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
292779 ACATTATGCT
292789 TTGTATCGATACA
1 TTGTATCGATACA
292802 TTGTATCGATACA
1 TTGTATCGATACA
292815 T
1 T
292816 GATCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:292813 original size:33 final size:32
Alignment explanation
Indices: 292771--292834 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
292761 ACACCCAGAA
* * *
292771 GTATCGATACATTATGCTTTGTATCGATACATT
1 GTATCGATACATGAT-CATTGTATCAATACATT
292804 GTATCGATACATGATCATTGTATCAATACAT
1 GTATCGATACATGATCATTGTATCAATACAT
292835 GGACAATTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 14 0.50
33 14 0.50
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.39
Consensus pattern (32 bp):
GTATCGATACATGATCATTGTATCAATACATT
Found at i:292824 original size:19 final size:19
Alignment explanation
Indices: 292799--292852 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 19
292789 TTGTATCGAT
292799 ACATTGTATCGATACAT-G
1 ACATTGTATCGATACATGG
*
292817 ATCATTGTATCAATACATGG
1 A-CATTGTATCGATACATGG
292837 ACAATTGTATCGATAC
1 AC-ATTGTATCGATAC
292853 CTAAAACTGG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 1 0.03
19 16 0.52
20 14 0.45
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:292909 original size:20 final size:20
Alignment explanation
Indices: 292884--292937 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
292874 CTACCACTGT
* *
292884 TTGTATCGTTACATGGT-ACA
1 TTGTATCGATACATGATGA-A
292904 TTGTATCGATACATGATGAA
1 TTGTATCGATACATGATGAA
292924 TTGTATCGATACAT
1 TTGTATCGATACAT
292938 TGCTTGTAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 30 0.97
21 1 0.03
ACGTcount: A:0.30, C:0.13, G:0.19, T:0.39
Consensus pattern (20 bp):
TTGTATCGATACATGATGAA
Found at i:301661 original size:13 final size:13
Alignment explanation
Indices: 301643--301669 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
301633 ACATTATGCT
301643 TTGTATCGATACA
1 TTGTATCGATACA
301656 TTGTATCGATACA
1 TTGTATCGATACA
301669 T
1 T
301670 GATCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:301667 original size:33 final size:32
Alignment explanation
Indices: 301625--301688 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
301615 ACACCCAGAA
* * *
301625 GTATCGATACATTATGCTTTGTATCGATACATT
1 GTATCGATACATGAT-CATTGTATCAATACATT
301658 GTATCGATACATGATCATTGTATCAATACAT
1 GTATCGATACATGATCATTGTATCAATACAT
301689 GGACAATTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 14 0.50
33 14 0.50
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.39
Consensus pattern (32 bp):
GTATCGATACATGATCATTGTATCAATACATT
Found at i:301678 original size:19 final size:19
Alignment explanation
Indices: 301653--301704 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
301643 TTGTATCGAT
301653 ACATTGTATCGATACAT-G
1 ACATTGTATCGATACATGG
*
301671 ATCATTGTATCAATACATGG
1 A-CATTGTATCGATACATGG
301691 ACAATTGTATCGAT
1 AC-ATTGTATCGAT
301705 GCCTGAAACT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 1 0.03
19 16 0.55
20 12 0.41
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:302904 original size:158 final size:155
Alignment explanation
Indices: 302741--303399 Score: 393
Period size: 158 Copynumber: 4.2 Consensus size: 155
302731 ATTTTCCTTA
* * *
302741 AAATCAAAGTTAATCACTTAAATAAGACAAGCATTGATTCTTGTAATAGTCTCCATTCTTTTCAA
1 AAATCAAAGTTAGTCACTTAAATAAGACAAACATTGATTCTTATAATAGTCTCCATTCTTTTCAA
* * * * *
302806 GATTGGGAACCGATAACACATTCATTTCATTAGGATACATGACATTGATGCTTTGGGGTCGTAGG
66 GATTAGGAACC-ATAACACATTC-CTTCATTAGGATACATGACATTGATGCTTTAGGATCGTAGA
302871 AATGCTTTTCTTTCCACCATTTTTGAT
129 AATGCTTTTCTTTCCACCATTTTTGAT
* * ** * * *
302898 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-TGAATAGTCATACTAATC-CCAATTCTTTT
1 A-AATCAAAGTTAGTCACTTAAATAAGACAAACATTG-ATTCTTATAATAGTCTCC-ATTCTTTT
* ** * * * * **
302961 -TAGCATTAGGCGCCATAA-ACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTAGTCTC
63 CAAG-ATTAGGAACCATAACACAT--TCCT-TCATTAGGATACATGACATTGATGCTTTAGGATC
* * * * *
303024 GAAACAAAGGCTTTT-TTCCCCCCAATTTTTG-T
124 G-TAGAAATGCTTTTCTTTCCACC-ATTTTTGAT
* * * * * * ** * *
303056 AAAGTCTAAGATCGT-ACCTTAAATGAGCCAAACATGGATTCTTATAATTCTCTTCATT-TTTTT
1 AAA-TCAAAGTTAGTCA-CTTAAATAAGACAAACATTGATTCTTATAATAGTCTCCATTCTTTTC
** * * * * * * * * ***
303119 GTGATTAGGCACTATAAACACGTTGCCTTCATCAGGATAAATGATATTGACGATTT-TCTTCGGC
64 AAGATTAGGAACCAT-AACACATT-CCTTCATTAGGATACATGACATTGATGCTTTAGGATC-G-
* ** * ** ***
303183 ATGGAAAT-CACTTCTTTGCAATATTTTCCTT
125 -TAGAAATGCTTTTCTTTCCACCATTTTTGAT
* * * * *
303214 AAATTCAAAGTTAATCGCTTAAATAAGACAAGCATCGATTCTTGTAATAGTCTCCATTCTTTTCA
1 AAA-TCAAAGTTAGTCACTTAAATAAGACAAACATTGATTCTTATAATAGTCTCCATTCTTTTCA
* * * *
303279 TGGTTGGGAACCAATAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGGATAGTAA
65 AGATTAGGAACC-ATAACACATT-CCTTCATTAGGATACATGACATTGATGCTTTAGGATCGT-A
303344 GAAATGCTTTTCTTTCCACCATTTTTGAT
127 GAAATGCTTTTCTTTCCACCATTTTTGAT
* *
303373 AGAATCAAAGTTTGTCTCTTAAATAAG
1 A-AATCAAAGTTAGTCACTTAAATAAG
303400 GAAAACGTAA
Statistics
Matches: 364, Mismatches: 110, Indels: 54
0.69 0.21 0.10
Matches are distributed among these distances:
156 6 0.02
157 63 0.17
158 187 0.51
159 103 0.28
160 5 0.01
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (155 bp):
AAATCAAAGTTAGTCACTTAAATAAGACAAACATTGATTCTTATAATAGTCTCCATTCTTTTCAA
GATTAGGAACCATAACACATTCCTTCATTAGGATACATGACATTGATGCTTTAGGATCGTAGAAA
TGCTTTTCTTTCCACCATTTTTGAT
Found at i:303595 original size:474 final size:475
Alignment explanation
Indices: 302520--304687 Score: 2567
Period size: 474 Copynumber: 4.5 Consensus size: 475
302510 AGCTTTCAAT
* * * *
302520 AAGGATACACGATATTGATGCTTTGGTCTCGAAACAAAGGCTTTTTTCCCCCTAATTTTTGTAAA
1 AAGGATACATGATACTGATGCTTTGGTCTCGAAACAAAGGCTTTCTTCCCCCCAATTTTTGTAAA
* *
302585 GTCTAAGTTCGTACCTTAAATGAGCCAAACATGGATTCT-TGTAATGATCTTCTTTTTTTTATGA
66 GTCTAAGTTCGTACCTTAAATGAGCCAAACATGGATTCTGT-TAATGATCTTCATTTTTTTGTGA
* ** *
302649 TTAGCCACTATAAACACATTCCCCTCACCAGGATAAATGATATTGACGATTTTCTTCGGCATGGA
130 TTAGGCACTATAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTTCGGCATGGA
** * *
302714 AATCATTTCTTTGCAATATTTTCCTTAAAATCAAAGTTAATCACTTAAATAAGACAAGCATTGAT
195 AATCATTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCGCTTAAATAAGACAAGCATCGAT
* * **
302779 TCTTGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCGATAACACATTCATTTCATTAGGATAC
260 TCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAATAACACATTCCCTTCATTAGGATAC
* *
302844 ATGACATTGATGCTTTGGGGTCGT-AGGAATGCTTTTCTTTCCACCATTTTTGATAGAATCAAAG
325 ATGACATTGATGCTTTAGGGTCGTAAGAAATGCTTTTCTTTCCACCATTTTTGATAGAATCAAAG
*
302908 TTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTTAGCATTAGGCG
390 TTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTTAGCATTAGGCA
*
302973 CCATAAACATAGTCTTCTCAT
455 CCATAAACATAGTCTTCTCAG
* * * *
302994 AAGGATACACGATATTGATGCTTTAGTCTCGAAACAAAGGCTTTTTTCCCCCCAATTTTTGTAAA
1 AAGGATACATGATACTGATGCTTTGGTCTCGAAACAAAGGCTTTCTTCCCCCCAATTTTTGTAAA
* **
303059 GTCTAAGATCGTACCTTAAATGAGCCAAACATGGATTCT-TATAATTCTCTTCATTTTTTTGTGA
66 GTCTAAGTTCGTACCTTAAATGAGCCAAACATGGATTCTGT-TAATGATCTTCATTTTTTTGTGA
* * * * *
303123 TTAGGCACTATAAACACGTTGCCTTCATCAGGATAAATGATATTGACGATTTTCTTCGGCATGGA
130 TTAGGCACTATAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTTCGGCATGGA
* ** *
303188 AATCACTTCTTTGCAATATTTTCCTTAAATTCAAAGTTAATCGCTTAAATAAGACAAGCATCGAT
195 AATCATTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCGCTTAAATAAGACAAGCATCGAT
* * *
303253 TCTTGTAATAGTCTCCATTCTTTTCATGGTTGGGAACCAATAACACATTCCCTTCATTAGGATAC
260 TCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAATAACACATTCCCTTCATTAGGATAC
* *
303318 ATGACATTGATGCTTTAGGATAGTAAGAAATGCTTTTCTTTCCACCATTTTTGATAGAATCAAAG
325 ATGACATTGATGCTTTAGGGTCGTAAGAAATGCTTTTCTTTCCACCATTTTTGATAGAATCAAAG
* * * * *
303383 TTTGTCTCTTAAATAAGGA-AAACGTAAATAGTCTTACTAATCCCCATTC-TTTTATGGATTAGG
390 TTTGTCTCTTAAATAA-GACAAACATGAATAGTCATACTAATCCCAATTCTTTTTA-GCATTAGG
* * *
303446 CCCCAAAAATATAGTC-T-TCAG
453 CACCATAAACATAGTCTTCTCAG
* * ** * ** *
303467 AA-GAGTACATGACACTGATGCTTTGGTTTCGAAGGAAAGGCTTTCTTACGTCCAATTTTTGTGA
1 AAGGA-TACATGATACTGATGCTTTGGTCTCGAAACAAAGGCTTTCTTCCCCCCAATTTTTGTAA
* * * *** ** * *
303531 TGTCTAAGTTCGTGCCTCAAATGAGCCAAGTGTGGATTCTGTTTTTAATCTTCATTCATTTTGTG
65 AGTCTAAGTTCGTACCTTAAATGAGCCAAACATGGATTCTGTTAATGATCTTCATT-TTTTTGTG
* * * * * * *
303596 ATTATGCACTTTAAACACATTCTCCTTATTAGGATAAATGATTTTGATGATTTTTTTTTGTGC--
129 ATTAGGCACTATAAACACATTCCCCTCATTAGGATAAATGATATTGATGA-TTTTCTTCG-GCAT
* * * * *
303659 GGGAATCTTTTCTTTGCCCTATTTT-CTTCAAAATCAGAGTTAATC-CTTTAAATAAGATAAACA
192 GGAAATCATTTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTAATCGC-TTAAATAAGACAAGCA
* *
303722 TCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAA-AATCACATTCCCTTTATTA
255 TCGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAATAA-CACATTCCCTTCATTA
* * *
303786 GGATACATGACATTGATGCTTTAGGGTCGTAAGAAACGAC-TTTCCTTCCACC-TCTTTTGATAA
319 GGATACATGACATTGATGCTTTAGGGTCGTAAGAAATG-CTTTTCTTTCCACCAT-TTTTGATAG
* * *
303849 AATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGG
382 AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTTAGC
* * *
303914 ATT-GGACATCATAACCAGAGTCTTCTCATG
447 ATTAGG-CACCATAAACATAGTCTTCTCA-G
* * *
303944 AA-GATACACAATATTGATACTTTGGTTTTGAAACAAAGACTTTGGTTTTGAAACAAAGGCTTTC
1 AAGGAT--AC---A-TGATAC--------TG-----ATG-CTTTGGTCTCGAAACAAAGGCTTTC
* * * * * * * *
304008 TTTCCCTCAATTTTTGTAAAGTCTACGTTCCTACCTCAAATAAGCCAAATAAGGATTCTAG-TAA
46 TTCCCCCCAATTTTTGTAAAGTCTAAGTTCGTACCTTAAATGAGCCAAACATGGATTCT-GTTAA
* * * * * * * *
304072 TCATCCTCGTTTATTCTATGATTAGGCACTATAAACACATTCTCCTCTTTAGGATAAATGATACT
110 TGATCTTCATTT-TTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAATGATATT
* * * * *
304137 GATGATTTTTTTCTGCATGGAAATCATTTCTTTGCCCTATTTTCCTTAATATCAAAGTTCATCCC
174 GATGATTTTCTTCGGCATGGAAATCATTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCGC
* *
304202 TTAAATAAGGCAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGACTGGGAACCAATAAC
239 TTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAATAAC
* * * * *
304267 ACATTCCCTTCATTAGGATACACGACATTAATGCTTTGGGGTCG-CAGGAATGCTTTTCTTTCCA
304 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGGGTCGTAAGAAATGCTTTTCTTTCCA
* * *
304331 CCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGATAAACATGAATAGTCATACTAATCCC
369 CCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCC
* * * * *
304396 AATTCTTTTTAGCATTAAGCACCATAAACGTAGTTTTCTTAT
434 AATTCTTTTTAGCATTAGGCACCATAAACATAGTCTTCTCAG
* * *
304438 AAGGATACATGTTATTGATGCTTTGGTCTCGAAACAAAGGCTTTCTTCCCCCCAATTTGTGTAAA
1 AAGGATACATGATACTGATGCTTTGGTCTCGAAACAAAGGCTTTCTTCCCCCCAATTTTTGTAAA
* * * * * *
304503 GTCTAAGTTCATGCCTTAAATAAGCCAAACATGGATTCTAG-AAACGATCTTCGTTTTTTTGTGA
66 GTCTAAGTTCGTACCTTAAATGAGCCAAACATGGATTCT-GTTAATGATCTTCATTTTTTTGTGA
*
304567 TTAGGCACTATAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTTCGGCGTGGA
130 TTAGGCACTATAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTTCGGCATGGA
* *
304632 AATCATTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAACCGCTGAAATAAGACA
195 AATCATTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCGCTTAAATAAGACA
304688 TGTCGCGACG
Statistics
Matches: 1446, Mismatches: 198, Indels: 100
0.83 0.11 0.06
Matches are distributed among these distances:
472 2 0.00
473 106 0.07
474 715 0.49
475 201 0.14
476 10 0.01
477 5 0.00
478 2 0.00
481 3 0.00
482 5 0.00
489 4 0.00
490 3 0.00
493 2 0.00
494 5 0.00
495 115 0.08
496 261 0.18
497 7 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (475 bp):
AAGGATACATGATACTGATGCTTTGGTCTCGAAACAAAGGCTTTCTTCCCCCCAATTTTTGTAAA
GTCTAAGTTCGTACCTTAAATGAGCCAAACATGGATTCTGTTAATGATCTTCATTTTTTTGTGAT
TAGGCACTATAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTTCGGCATGGAA
ATCATTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCGCTTAAATAAGACAAGCATCGATT
CTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAATAACACATTCCCTTCATTAGGATACA
TGACATTGATGCTTTAGGGTCGTAAGAAATGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGT
TTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTTAGCATTAGGCAC
CATAAACATAGTCTTCTCAG
Found at i:303987 original size:20 final size:20
Alignment explanation
Indices: 303962--304006 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
303952 CAATATTGAT
303962 ACTTTGGTTTTGAAACAAAG
1 ACTTTGGTTTTGAAACAAAG
303982 ACTTTGGTTTTGAAACAAAG
1 ACTTTGGTTTTGAAACAAAG
*
304002 GCTTT
1 ACTTT
304007 CTTTCCCTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (20 bp):
ACTTTGGTTTTGAAACAAAG
Found at i:307941 original size:20 final size:20
Alignment explanation
Indices: 307916--307991 Score: 82
Period size: 20 Copynumber: 3.8 Consensus size: 20
307906 GTAAAAAGAC
*
307916 AGAATGTATCGATATATTGA
1 AGAATGTATCGATACATTGA
*
307936 AGAATGTATCGATACATTCA
1 AGAATGTATCGATACATTGA
* *
307956 TA-CATGTATTGATACATTGA
1 -AGAATGTATCGATACATTGA
* *
307976 AAAATGTATCAATACA
1 AGAATGTATCGATACA
307992 ACTGGGTACT
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
19 1 0.02
20 44 0.96
21 1 0.02
ACGTcount: A:0.42, C:0.11, G:0.14, T:0.33
Consensus pattern (20 bp):
AGAATGTATCGATACATTGA
Found at i:308459 original size:13 final size:13
Alignment explanation
Indices: 308441--308465 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
308431 AAAGATGGCC
308441 TTATTAAAAAAAG
1 TTATTAAAAAAAG
308454 TTATTAAAAAAA
1 TTATTAAAAAAA
308466 ACAGCTAGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (13 bp):
TTATTAAAAAAAG
Found at i:309586 original size:473 final size:473
Alignment explanation
Indices: 308490--309676 Score: 1480
Period size: 474 Copynumber: 2.5 Consensus size: 473
308480 TTTGGTGTCT
* *
308490 ATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAATCGCAT
1 ATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTTAAGATTGGGAACCAAAATCACAT
* * *
308555 TCCCTTCATTAGGATACAAGACATTGATGCTTTAGGGTCACAAGAAACGCTTTTCTTTCCACTGT
66 TCCCTTCATTAGGATACATGACATTGATGCTTTAGGGTCGCAAGAAACGCTTTTCTTTCCACCGT
*
308620 GTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCAATT
131 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCC-ATT
* * * * *** *
308685 CCTTTCAGCATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGT
195 -CTTTTAGCATTAGGCACCATAAACATAGTCTTCTCAGAAGGATAAACGACACCAATGATTTGGT
* * *
308750 CTTGAAACAAAGGCTCTCTTCCCCTTAATTTTTGTAAAGTCTAAGTTCGTGCCTTAAATGAACCG
259 CTTGAAACAAAGGCTCTCTTCCCCTCAATTTTTGTAAAGTCTAAGTTCATGCCTTAAATGAACCA
* * *
308815 AACACGGATTCTAGTAATGATCGTCGTTTTTTTGTGATTAGTCACTAAAAACACATTTCCCTCAT
324 AACACGGATTATAGTAATGATCGTCATTATTTTGTGATTAGTCACTAAAAACACATTTCCCTCAT
*
308880 CCAGATAAATGATATTGAAGATTTTCTTCGGCATGGAAATCATTTCTTTGCCGTATTTTCCTTAA
389 CCAGATAAATGATATTGAAGATTTTCTTCGGCATGGAAATCATTTCTTTGCCCTATTTTCCTTAA
**
308945 AATCAAAATTAATCACTTAA
454 AATCAAAATTAATCACCCAA
**
308965 ATAAGACCGGCATCGATTCTTGTAACAGTCTCCATT-TTTTTAAGATTGGGAACCAATAA-CACA
1 ATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTTAAGATTGGGAACCAA-AATCACA
* * * * *
309028 TTCCCTTCATTAGGATACATGACATTGATACTTTGGGGTCGCAAGAAATGCTTTTCTTTCTACCA
65 TTCCCTTCATTAGGATACATGACATTGATGCTTTAGGGTCGCAAGAAACGCTTTTCTTTCCACCG
* * * *
309093 TTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACGTAAATAGTCTTACTAATCCCATT
130 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCATT
* * * * *
309158 CTTTTATGGATTAGGCATCGTAAATATAGTC-T-TCAGAA-GAGTAAATGACACCAATGATTTGG
195 CTTTTA-GCATTAGGCACCATAAACATAGTCTTCTCAGAAGGA-TAAACGACACCAATGATTTGG
** * * *
309220 T-TTCGAAGGAAAGGCTTTCTT-CCCTCCAATTTTTGTGAAGTCTAAGTTCATGCCTTAAATGAG
258 TCTT-GAAACAAAGGCTCTCTTCCCCT-CAATTTTTGTAAAGTCTAAGTTCATGCCTTAAATGAA
* *** * * **
309283 CTAAATGTGGATTAT-GTTATTGATCTTCATTCATTTTGTGATTAGTCACTTTAAACACA-TTCT
321 CCAAACACGGATTATAG-TAATGATCGTCATT-ATTTTGTGATTAGTCACTAAAAACACATTTC-
* ** ** * *
309346 CCTTAT-CAGGATAAATGATATT-AATGATTTTCTTTTGTGTGGGAATCTTTTCTTTGCCCTATT
383 CCTCATCCA-GATAAATGATATTGAA-GATTTTCTTCGGCATGGAAATCATTTCTTTGCCCTATT
* * * * *
309409 TTTCTTAAAATCAGAGTTCATCCCCCAA
446 TTCCTTAAAATCAAAATTAATCACCCAA
* * *
309437 ATAAGATAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTTAAGATTGGGAACCAAAATCACAT
1 ATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTTAAGATTGGGAACCAAAATCACAT
* * * *
309502 TCCCTTCATTAAGATACATGACATTGATGCTTTAGGGTCGTAAGAAACACTTTTCTCTCCACCGT
66 TCCCTTCATTAGGATACATGACATTGATGCTTTAGGGTCGCAAGAAACGCTTTTCTTTCCACCGT
309567 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATT
131 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAAT-CCCATT
* * * *
309632 CTTTTTAGGATT-GGACATCATAAACAGAGTCTTCCCAGAAGGATA
195 C-TTTTAGCATTAGG-CACCATAAACATAGTCTTCTCAGAAGGATA
309677 CATGATATTG
Statistics
Matches: 608, Mismatches: 86, Indels: 35
0.83 0.12 0.05
Matches are distributed among these distances:
470 9 0.01
471 94 0.15
472 133 0.22
473 160 0.26
474 161 0.26
475 42 0.07
476 7 0.01
477 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (473 bp):
ATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTTAAGATTGGGAACCAAAATCACAT
TCCCTTCATTAGGATACATGACATTGATGCTTTAGGGTCGCAAGAAACGCTTTTCTTTCCACCGT
TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCATTC
TTTTAGCATTAGGCACCATAAACATAGTCTTCTCAGAAGGATAAACGACACCAATGATTTGGTCT
TGAAACAAAGGCTCTCTTCCCCTCAATTTTTGTAAAGTCTAAGTTCATGCCTTAAATGAACCAAA
CACGGATTATAGTAATGATCGTCATTATTTTGTGATTAGTCACTAAAAACACATTTCCCTCATCC
AGATAAATGATATTGAAGATTTTCTTCGGCATGGAAATCATTTCTTTGCCCTATTTTCCTTAAAA
TCAAAATTAATCACCCAA
Found at i:310636 original size:13 final size:13
Alignment explanation
Indices: 310618--310643 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
310608 CAATTTTTTG
310618 TGTATCGATACAT
1 TGTATCGATACAT
310631 TGTATCGATACAT
1 TGTATCGATACAT
310644 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:310729 original size:20 final size:20
Alignment explanation
Indices: 310704--310776 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
310694 AACTTTTTTT
310704 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
310724 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
310745 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
310765 ATGTATCGATAC
1 ATGTATCGATAC
310777 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:310755 original size:41 final size:42
Alignment explanation
Indices: 310682--310776 Score: 165
Period size: 41 Copynumber: 2.3 Consensus size: 42
310672 CTGCCAAGAA
*
310682 ATGTATCGATACAACTTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACAACTTTTTTCATGTATCGATACATTGCAAC
*
310724 ATGTATCGATACATC-TTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACAACTTTTTTCATGTATCGATACATTGCAAC
310765 ATGTATCGATAC
1 ATGTATCGATAC
310777 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
41 37 0.73
42 14 0.27
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.39
Consensus pattern (42 bp):
ATGTATCGATACAACTTTTTTCATGTATCGATACATTGCAAC
Found at i:313223 original size:13 final size:13
Alignment explanation
Indices: 313205--313229 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
313195 ATAATCACCC
313205 TGTATCGATACAG
1 TGTATCGATACAG
313218 TGTATCGATACA
1 TGTATCGATACA
313230 AGGAAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:315329 original size:15 final size:15
Alignment explanation
Indices: 315309--315339 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
315299 ATTTCGTTTG
*
315309 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
315324 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
315339 G
1 G
315340 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:319419 original size:13 final size:13
Alignment explanation
Indices: 319401--319426 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
319391 CAATTTTTTG
319401 TGTATCGATACAT
1 TGTATCGATACAT
319414 TGTATCGATACAT
1 TGTATCGATACAT
319427 ACTTGTTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:319512 original size:20 final size:20
Alignment explanation
Indices: 319487--319559 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
319477 AACTTTTTTT
319487 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
319507 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
319528 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
319548 ATGTATCGATAC
1 ATGTATCGATAC
319560 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:319538 original size:41 final size:42
Alignment explanation
Indices: 319465--319559 Score: 165
Period size: 41 Copynumber: 2.3 Consensus size: 42
319455 CTGCCAAGAA
*
319465 ATGTATCGATACAACTTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACAACTTTTTTCATGTATCGATACATTGCAAC
*
319507 ATGTATCGATACATC-TTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACAACTTTTTTCATGTATCGATACATTGCAAC
319548 ATGTATCGATAC
1 ATGTATCGATAC
319560 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
41 37 0.73
42 14 0.27
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.39
Consensus pattern (42 bp):
ATGTATCGATACAACTTTTTTCATGTATCGATACATTGCAAC
Found at i:321050 original size:473 final size:474
Alignment explanation
Indices: 319944--325469 Score: 1751
Period size: 473 Copynumber: 11.4 Consensus size: 474
319934 TTTGGTGTCT
319944 ATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTTAAGATTGGGAACCAAAATCACAT
1 ATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTTAAGATTGGGAACCAAAATCACAT
* * *
320009 TCCGTTCATTAGGATACAAGACATTGATGCTTTAGGGTCAGAAGAAATG-TTTT-TCATTCAACT
66 TCCCTTCATTAGGATACATGACATTGATGCTTTAGGGTC-GAAGAAATGCTTTTCTC-TTCGAC-
*
320072 GTGTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCAA
128 GTTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCAA
* * * ** *
320137 TTCCTTTCAGCATTACGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTG
193 CTCCTTTCAGCATTACGCACCATAAACATAGTCTTCTCAGAAGGATACATGACACCGATGATTTG
** * * * *
320202 GTCTTGAAACAAAGGCTCTCTTCCCCTTAATTTTTGTAAAGTCTAAGTTCGTGCCTTAAATGAGT
258 GTCTTGAAACAAAGGCTCTCTTCCCCCCAATTTTTATAAAGTCTAAGTTCGTGCCTCAAACGAGC
* * * * *
320267 CGAACATGGATTCTAGTAATGATCGTCATTTTTTTGTGATTAGTCACTAAAAACACATTTCCCTC
323 CAAACATGGATTATAGTAATGATCGTCATTATTTTGGGATTAGGCACTAAAAACACATTTCCCTC
* * *
320332 ATTAGGATAAATGATATTGATGATTTTCTTCGGCATGGAAATCATTTCTTTGCCCTATTTTCCTT
388 ATAAGGATAAATGATATTAATGATTTTCTTCGGCATGGAAATCATTTCCTTGCCCTATTTTCCTT
* *
320397 AAAATCAAAATTAATCACTTAA
453 AAAATCAAAATCAATCACCTAA
** * * *
320419 ATAAGACCGGCATCGATTGTTGTAATAGTCTCCATT-TTTTTAAGATTAGGAACCAATAA-CACA
1 ATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTTAAGATTGGGAACCAA-AATCACA
* * * * *
320482 TTCCCTTCATTAGGATACATGACATTGATACTTTGGGGTCACAAGAAATGCTTCTCT-TTCCGCC
65 TTCCCTTCATTAGGATACATGACATTGATGCTTTAGGGTC-GAAGAAATGCTTTTCTCTT-CGAC
* * * * * * *
320546 ATTTTTGATAGAATCAAAGTTTATCTCTTAAATAATACAAACGTAAATAGTCTTACTAATCCC-A
128 GTTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCAA
* * * * * *
320610 CT-CTTTTATGGATTAGGCATCGTAAATATAGTC-T-TCAGAA-GAGTACATGACACCGATGATT
193 CTCCTTTCA-GCATTACGCACCATAAACATAGTCTTCTCAGAAGGA-TACATGACACCGATGATT
** * * *
320671 TGGT-TTCGAAGGAAAGGCTTTCTTCCCCCCAATTTTTATGAAGTCTACGTTCGTGCCTCAAACG
256 TGGTCTT-GAAACAAAGGCTCTCTTCCCCCCAATTTTTATAAAGTCTAAGTTCGTGCCTCAAACG
** * * **
320735 AGCCAAATGTGGATTAT-GTTATTGATCTTCATTCATTTTGGGATTAGGCACTTTAAACACATTC
320 AGCCAAACATGGATTATAG-TAATGATCGTCATT-ATTTTGGGATTAGGCACTAAAAACACATT-
* * ** ** * *
320799 TCCGT-ATAAGGATAAATGATATTAATGTTTTTCTTTTGTGTGGGAATCTTTTCCTTGCCCTATT
382 TCCCTCATAAGGATAAATGATATTAATGATTTTCTTCGGCATGGAAATCATTTCCTTGCCCTATT
* * * * * *
320863 TTTCTTATAATCAGAGTCCATCCCCTAA
447 TTCCTTAAAATCAAAATCAATCACCTAA
* * * *
320891 ATAAGATAAGCATCGATTCTCGTAACAGACTCCATTCTTTTCAAGATTGGGAACCAAAATCACAT
1 ATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTTAAGATTGGGAACCAAAATCACAT
* * * *
320956 TCCCTTTATTAAGATACATGACATTGATGCTTTAGGGTCGTAAGAAACGCTTTTCTCTTCGTCGT
66 TCCCTTCATTAGGATACATGACATTGATGCTTTAGGGTCG-AAGAAATGCTTTTCTCTTCGACGT
* ** * *
321021 TTTTGATAAAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATAGTCATTGTAATCCCCATT
130 TTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCAACT
* * * * * * * * * ** * ** *
321086 CTTTTTAGGATT-GGACATCATAAACAGAGTCTTCCCATAAGGATAAACAATATTGATGCTTTGG
195 CCTTTCAGCATTACG-CACCATAAACATAGTCTTCTCAGAAGGATACATGACACCGATGATTTGG
* * * * * * ** ** * ** ** ** *
321150 TTTTGGAATAAGGGATGGGTGCGACCATACCAGCACTAGTGCACCGGATCCCATCAGAACTTCGT
259 TCTTGAAACAAAGGCT--CT-CTTCC-CCCCA--ATTTTTATA-AAG-T--C-T---AAGTTCGT
* * * **** * * * ** *** * * *
321215 AG--TTAAGCGTGCTTGGGC--GAGAGTAGTACT-AGGA-CGGGGAACCTCTTGGGA--AGTCCT
310 -GCCTCAAACGAGC-CAAACATG-GATTA-TAGTAATGATC-GTCATTATTTTGGGATTAG-GCA
**** * * * ** * * * * * * *
321272 CGTGTTGCACCCCTCTT-CTTTTTAA-AAAAAATCCAAATTCAAAGAAATAAGCTCAATTAATCC
369 C-T-AAAAACACAT-TTCCCTCATAAGGATAAAT-GATATT-AATG--AT----T---TT-CTTC
* ** ** *** * **** ** * *
321335 GGATCCTACAAATCCAAATCAAAG--ATGGCCTGATTAAAA--AAAGT--AT--CTTAAA
419 GG--CATGGAAAT-CATTTCCTTGCCCTATTTTCCTTAAAATCAAAATCAATCACCT-AA
* ** * * *
321387 AAAAGAGCTGGACAAAATTTGGTGTCTATAAGATAAGCATTGATTCTTGTAACAATCTCCACTCT
1 ATAAGA-C---A-AGCA-TCGAT-TCT-T--G-TAA-CA--G--TC-T----CCAT-T---CT-T
* * *
321452 TTTCAAGATTAGGAACCAAAATCACATTCCCTTCATTAGGATACATGATATTGATGCTTTAAGGT
40 TTT-AAGATTGGGAACCAAAATCACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGGGT
* * * *
321517 CGCAAGAAACGCTTTTCT-TTCCACTGTGTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
104 CG-AAGAAATGCTTTTCTCTTCGAC-GTTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACA
* * * *
321581 AACATGAATAGTCATAATAATCCCAATTCCTTTCAGCATTAGGCACCATAAACATAGTCTTCCCA
167 AACATGAATAGTCATACTAATCCCAACTCCTTTCAGCATTACGCACCATAAACATAGTCTTCTCA
* * * ** * * * *
321646 TAAGGATACACGATATTGATGCTTTGGTCTTGAAACAAAGGCTCTCTTCCCCCTAACTTTTGTAA
232 GAAGGATACATGACACCGATGATTTGGTCTTGAAACAAAGGCTCTCTTCCCCCCAATTTTTATAA
* * **
321711 AGTCTAAGTTCGTGCCTTAAATGAG-C---C---GA--ATACG----GAT--TC--TA----GTA
297 AGTCTAAGTTCGTGCCTCAAACGAGCCAAACATGGATTATA-GTAATGATCGTCATTATTTTGGG
* * * * * *
321755 ATTAGG-AC-AAAAACACATTTCCCTAATTAGGACAAATAATATTGATGATTTTCTTCAGCATGG
361 ATTAGGCACTAAAAACACATTTCCCTCATAAGGATAAATGATATTAATGATTTTCTTCGGCATGG
* * * *
321818 AAATCATTTCTTTCCCCTATTTTCCTTAAAATCAAAATTAATCACTTAA
426 AAATCATTTCCTTGCCCTATTTTCCTTAAAATCAAAATCAATCACCTAA
* * *
321867 ATAAGATC-GGCATCGATTCTTGTAACAATCTCTA-T-TTTTTAAGATTGGGAACCAATAA-CAC
1 ATAAGA-CAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTTAAGATTGGGAACCAA-AATCAC
* * * * *
321928 ATTCCCTTCATTAGGATACATGACATTGATACTTTGGGGTTGCAAGAAATGCTTTTGT-TTCTGC
64 ATTCCCTTCATTAGGATACATGACATTGATGCTTTAGGGTCG-AAGAAATGCTTTTCTCTTC-GA
* * * *
321992 CATTTTTGATAAAATCAAAGTTTGTCTCTTCAATAAGACAAACATAAATAGTCTTACTAATCCC-
127 CGTTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCA
* * * * * * ** *
322056 A-TTCTTTTATGGATTA-GACAACATAAATATAGT-AT-TCAGAA-GAGTACATGACACTAATGC
192 ACTCCTTTCA-GCATTACG-CACCATAAACATAGTCTTCTCAGAAGGA-TACATGACACCGATGA
* *** * * ** * * * **
322116 TTTCGT-TTCGAAGGTAAGGCTTTCTTCCCCCCAATTTTTGTGTAGTCTAAGTTCATGACTTAGT
254 TTTGGTCTT-GAAACAAAGGCTCTCTTCCCCCCAATTTTTATAAAGTCTAAGTTCGTGCCTCAAA
* ** * ** * * * **
322180 TGAGCCAAATGTGGATTAT-GTTATTGATATTCATTCATTTTGTGTTTAGGCGCTTTAAACACA-
318 CGAGCCAAACATGGATTATAG-TAATGATCGTCATT-ATTTTGGGATTAGGCACTAAAAACACAT
* * * ** ** * * *
322243 TTCGCCTTATTAGGATAAATGATATTGATGATTTTCTTTTGTGTGGGAATCTTTTCTTTGCCCTA
381 TTC-CCTCATAAGGATAAATGATATTAATGATTTTCTTCGGCATGGAAATCATTTCCTTGCCCTA
* * * * *
322308 TTTTTCTTAAAATCAGAGTCCATCCCCTAA
445 TTTTCCTTAAAATCAAAATCAATCACCTAA
* * * * *
322338 ATAAGATAAGCATTGATT-TTCGTAACAGACTCCATTCTTTTCAAGAATGGGAACCAAAATCACA
1 ATAAGACAAGCATCGATTCTT-GTAACAGTCTCCATTCTTTTTAAGATTGGGAACCAAAATCACA
*
322402 TTCCCTTCATTAGGATACATGACATTGATGCTTTAGGGTCGTAAGAAATGCTTTTCTC-TCCATC
65 TTCCCTTCATTAGGATACATGACATTGATGCTTTAGGGTCG-AAGAAATGCTTTTCTCTTCGA-C
* * * *
322466 ATTTTTGATAGAATCAAAGTTTGTCTCGTAAATAAGTCAAACATGAATAGTCATACTAAT-CCAC
128 GTTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCA-
* * * * * * * * * ** *
322530 ATTCAATTT-AGGATTA-GACATCATAAACAGAGTCTTCCCATAAGGATACACGATATTGATGCT
192 ACTC-CTTTCAGCATTACG-CACCATAAACATAGTCTTCTCAGAAGGATACATGACACCGATGAT
* * * * * * * ** *** * * ** *
322593 TTGGTTTTGAAACAAGGGATGTGTTCGACCATACCAGCACTAGTGCACCGGATTCCATCAGAACT
255 TTGGTCTTGAAACAAAGGCTCTCTTC--CC---CC--CAAT-TTTTA-TAAAGT-C-TAAGTTCG
* * * * **** * * * ** ** *** * *
322658 TCGCAATTAAGCGTGCTTGGGC--GAGAGTAGTACT-AGGAAGGGAAACCTCTTGGGAAGTCCTT
309 T-GC-CTCAAACGAGC-CAAACATG-GATTA-TAGTAATGATCGTCATTATTTTGGG-A-T--TA
*** *** * *** * * ** * * * * ** ***
322720 GTGTTGT-ACCCCTC-TTTTTTTTAAAAAAAAAAATCCAAATTAAAAGAAATAAGCTCAATTAAT
365 G-GCACTAAAAACACATTTCCCTCATAAGGATAAAT-GATATT-AATG--AT--TTTC--TTCGG
* ** * ***** ** ** * **
322783 C-T-GAATCCTACAAATCCAAATAAAAAATGGCGTGATTAAAA--AAAGTATC--TTA-AAAA
421 CATGGAA--AT-CATTTCC--TTGCCCTAT--TTTCCTTAAAATCAAA--ATCAATCACCTAA
* * * * * *
322839 AAAAGCTGTACAA-AATTTGGTGTCTATAAGACAAGCATCGATTCTTGTAATAGTCTCCATTCCT
1 ATAA---G-ACAAGCA-TCGAT-TCT-T--G-TAA-CA--G--TC-----------TCCATTCTT
* *
322903 TTCAAGATTAGGAACCAAAATCACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGGGTC
40 TTTAAGATTGGGAACCAAAATCACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGGGTC
* * * *
322968 GTAAGAAACGCTTTTCT-TTCCACCTTGTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
105 G-AAGAAATGCTTTTCTCTTCGACGTT-TTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAA
* * * * *
323032 CCATGAATAGTTATACTAATCCCAATTCCTTTCAGCATTAGGCACCATAAACATAGTCTTCTCAT
168 ACATGAATAGTCATACTAATCCCAACTCCTTTCAGCATTACGCACCATAAACATAGTCTTCTCAG
* * ** * * * *
323097 AAGGATACACGATATTGATGCTTTGGTCTTGAAACAAAGGCTCTCTTCCGCCTAATTTTTGTAAA
233 AAGGATACATGACACCGATGATTTGGTCTTGAAACAAAGGCTCTCTTCCCCCCAATTTTTATAAA
* * * * * * * * *
323162 GTCTAAGTTCCTGCCTTAAATGAGCCCAACACGGATTCTAGTAATGATCGTCGTTTTTTTGTGAT
298 GTCTAAGTTCGTGCCTCAAACGAGCCAAACATGGATTATAGTAATGATCGTCATTATTTTGGGAT
* ** * * ** * * *
323227 TTGTTAGTAAAAACACATTTCCCTCATTAGGATAAATGATGCTGATAATTTTCTTCAGCATGGAA
363 TAGGCACTAAAAACACATTTCCCTCATAAGGATAAATGATATTAATGATTTTCTTCGGCATGGAA
* * * *
323292 ATCATTTCTTTGCCCTATTGTCCTTAAAATCAAAATTAATCACTTAA
428 ATCATTTCCTTGCCCTATTTTCCTTAAAATCAAAATCAATCACCTAA
** * * *
323339 ATAAGACCGGCATCGATTCTTGCAACATTCT-CATTTTTTTTAAGATTGGGAACCAATAA-CACA
1 ATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTTAAGATTGGGAACCAA-AATCACA
* * * * * *
323402 TCCCCTTCATTAGGATATATGACATTGATACTTTGGGGTCGCAAGAAATGCTTTTGT-TTCTGCC
65 TTCCCTTCATTAGGATACATGACATTGATGCTTTAGGGTCG-AAGAAATGCTTTTCTCTTC-GAC
* * * * * * * *
323466 ATTTTTGACAGAATCAAAGTTTATCTCTTAAATAAGACAAACGTAAATTGTCTTACTAATCCC-A
128 GTTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCAA
* * * * * * * ** *
323530 -TTCTTTTATGGATTAGGCAACATAAATATAGTC-T-TCA-AAAGAGTACATGACACTAATGCTT
193 CTCCTTTCA-GCATTACGCACCATAAACATAGTCTTCTCAGAAGGA-TACATGACACCGATGATT
** * * * * * * * *
323591 TGGT-TTCGAAGGAAAGGCTTTTTTCCCCCTAATTTTTGTGAAGCCTAAGTTCATGCCTCAAATG
256 TGGTCTT-GAAACAAAGGCTCTCTTCCCCCCAATTTTTATAAAGTCTAAGTTCGTGCCTCAAACG
** * * * * ** ** *
323655 AGCCAAATGTGGATT-TTGTTATTGATCTTCTTTCATTTTGTAATTAGGCACTTTATACACA-TT
320 AGCCAAACATGGATTATAG-TAATGATCGTCATT-ATTTTGGGATTAGGCACTAAAAACACATTT
* ** * * ** ** * * **
323718 CTCTTTTTTAGGATAAATGATATTGATGATTTTCTTTTGTGTGGGAATCTTTTATTTGCCCTATT
383 C-CCTCATAAGGATAAATGATATTAATGATTTTCTTCGGCATGGAAATCATTTCCTTGCCCTATT
** * *
323783 TTTTTTAAAATCAAAGTTC-ATCCCCTAA
447 TTCCTTAAAATCAAA-ATCAATCACCTAA
* * * *
323811 ATAAGATAAGCATCGATTCTCGTAACAGTCTCCGTTCTTTTCAAGATTGGGAACCAAAATCACAT
1 ATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTTAAGATTGGGAACCAAAATCACAT
* * ** *
323876 TCCCTTCTTTAGGATACATGACATTGATGCTTTAAGGTCGTAAGAAACACTTTTCTC-TCCACCG
66 TCCCTTCATTAGGATACATGACATTGATGCTTTAGGGTCG-AAGAAATGCTTTTCTCTTCGA-CG
* * * * *
323940 TTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTTATACTAATCCCCAT
129 TTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCAAC
* * * * * * * * * * ** *
324005 TCTTTTTAGGATT-GGACATCATAAACAGAGTCTTCCCATAAGGATACACGATATTGATGCTTTG
194 TCCTTTCAGCATTACG-CACCATAAACATAGTCTTCTCAGAAGGATACATGACACCGATGATTTG
* * * *** * *** ** * ** *
324069 GTTTTGAAACAAGGGATGAGTTCGACCATACCAA-CACTAGTGCACCGGATCCCATCAGAACTTC
258 GTCTTGAAACAAAGGCTCTCTTC--CC--CCCAATTTTTA-T--A-AAG-T--C-TAAGTTCGT-
* * * * * * * * * * ** *
324133 GCAATTAAGCGTGCTTAGAC--GAGAGTAGTACT-AGGATGGGGA--ACTTCTTGGGAAGTCCTC
310 GC-CTCAAACGAGC-CAAACATG-GATTA-TAGTAATGATCGTCATTA-TT-TTGGG-A-T--TA
* * * * * *
324193 GTGTTCCACCTCTCTTTTTTTTAAAAA-A-A--TCCAAATTAAAAGAAATAAGCTCA-ATTAATC
365 G-G---CA-----C-------TAAAAACACATTTCC--CTCATAAG-GATAA-ATGATATTAA--
* * * ** ** **** * ** **
324253 TGA-ATCCTAC-AAATCCAAATCA-AAGATGGCCAGATTAAAAAAAGTAT-CTTAAAAAAAAAAG
408 TGATTTTCTTCGGCATGGAAATCATTTCCTTGCCCTATT--------T-TCCTTAAAATCAAAA-
** * **
324314 CTGGGCAAAATTTGGCTTCT
463 -T---C--AA--TCACCTAA
*
324334 ATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAATCACAT
1 ATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTTAAGATTGGGAACCAAAATCACAT
* * *
324399 TCCCTTCATTAGGATACATGACATTGATGCTTTAGGGTCGCAAGAAACGCTTTTCT-TTCCACCT
66 TCCCTTCATTAGGATACATGACATTGATGCTTTAGGGTCG-AAGAAATGCTTTTCTCTTCGACGT
* * * *
324463 TGTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAACCATGAATAGTCATACTAATCCCAAT
130 T-TTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCAAC
* * * * ** * *
324528 TCCTTTCAGCATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGTTGCTTTGG
194 TCCTTTCAGCATTACGCACCATAAACATAGTCTTCTCAGAAGGATACATGACACCGATGATTTGG
** * * *
324593 TCTTGAAACAAAGGCTCTCTTCCCCTTAATTTTTATAAAGTCTAAGTTCGTGCCTTAAATGAGTC
259 TCTTGAAACAAAGGCTCTCTTCCCCCCAATTTTTATAAAGTCTAAGTTCGTGCCTCAAACGAGCC
* ** * * * * * * *
324658 GAACACCGATTCTAGTAATGATCGTCGTTTTTTTGTGATTAGTCCCTAAAAACACATTTCCTTCA
324 AAACATGGATTATAGTAATGATCGTCATTATTTTGGGATTAGGCACTAAAAACACATTTCCCTCA
* * * * *
324723 TTAGGATAAATGATATTGA-GTATTTTCCTCGGAATGGAAATCATTTCTTTGCCCTATTTTCCTT
389 TAAGGATAAATGATATTAATG-ATTTTCTTCGGCATGGAAATCATTTCCTTGCCCTATTTTCCTT
* *
324787 AAAATCAAAATTAATCAGCTAA
453 AAAATCAAAATCAATCACCTAA
** * * *
324809 ATAAGACCGGCATTGATTATTGTAACAATCTCCATT-TTTTTAAGATTGGGAACCAATAA-CACA
1 ATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTTAAGATTGGGAACCAA-AATCACA
* * * * * * * *
324872 TTCCCTTCATTAGGATACATGACACTGATACTTTGGGGTTGCAAGAAATGCTTTTGTTTTCGCCA
65 TTCCCTTCATTAGGATACATGACATTGATGCTTTAGGGTCG-AAGAAATGCTTTTCTCTTCGACG
* * * * * *
324937 TTTTTGATAGAATCAAAGTTTATCTCTTAAGTAAGACAAACGTAAATAGTCTTACTAATCCC-A-
129 TTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCAAC
* * * * * * * * *
325000 TTCTTTTATGGATTAGGCATCATAAATATAGTC-T-TCAGAA-GAGTGCATGACACTGATGCTTT
194 TCCTTTCA-GCATTACGCACCATAAACATAGTCTTCTCAGAAGGA-TACATGACACCGATGATTT
** * ** *
325062 GGT-TTCGAAGGAAAGGCTTTCTTCCCCCCAAGTTTTT-GGAAGTCTAAGTTCGTGCCTCAAATG
257 GGTCTT-GAAACAAAGGCTCTCTTCCCCCCAA-TTTTTATAAAGTCTAAGTTCGTGCCTCAAACG
** * * * * **
325125 AGCCAAATGTGGATTAT-GTTATTAATCTTCATTCATTTTGTGATTAGGCACTTTAAACACA-TT
320 AGCCAAACATGGATTATAG-TAATGATCGTCATT-ATTTTGGGATTAGGCACTAAAAACACATTT
* * * ** ** * * * *
325188 CTCCTTATTAGGATAAATGATATTGATGATTTTCTTTTGTGTGGGAATCTTTTCTTTGCGCTATT
383 C-CCTCATAAGGATAAATGATATTAATGATTTTCTTCGGCATGGAAATCATTTCCTTGCCCTATT
* * *
325253 TTTCTTAAAATCAAAGTTC-ATCCCCTAA
447 TTCCTTAAAATCAAA-ATCAATCACCTAA
* * * * *
325281 ATAAGATAAGCATTGATTCTCGTAACAGTCTTCATTCTTTTTAAAATTGGGAACCAAAATCACAT
1 ATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTTAAGATTGGGAACCAAAATCACAT
* * ** *
325346 TCCCTTCATTAGGATACATGACATTGATGCTTTAAGGTCATAAGAAACACTTTTCTC-TCCACCG
66 TCCCTTCATTAGGATACATGACATTGATGCTTTAGGGTC-GAAGAAATGCTTTTCTCTTCGA-CG
* *
325410 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGATAAACATGAATAGTCATACTAATC
129 TTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATC
325470 TCCATTTTTT
Statistics
Matches: 3700, Mismatches: 994, Indels: 716
0.68 0.18 0.13
Matches are distributed among these distances:
447 4 0.00
448 68 0.02
449 9 0.00
450 19 0.01
451 127 0.03
452 7 0.00
453 1 0.00
455 3 0.00
457 3 0.00
459 2 0.00
460 3 0.00
462 2 0.00
463 1 0.00
464 3 0.00
465 1 0.00
468 2 0.00
469 10 0.00
470 25 0.01
471 381 0.10
472 396 0.11
473 596 0.16
474 453 0.12
475 111 0.03
476 96 0.03
477 22 0.01
478 5 0.00
479 6 0.00
480 16 0.00
481 5 0.00
482 4 0.00
483 6 0.00
484 16 0.00
485 3 0.00
486 12 0.00
487 27 0.01
488 36 0.01
489 55 0.01
490 35 0.01
491 32 0.01
492 28 0.01
493 5 0.00
494 4 0.00
495 7 0.00
496 15 0.00
497 19 0.01
498 3 0.00
499 17 0.00
500 13 0.00
501 20 0.01
502 19 0.01
503 10 0.00
504 17 0.00
505 10 0.00
506 18 0.00
507 18 0.00
508 17 0.00
509 25 0.01
510 38 0.01
511 7 0.00
512 12 0.00
513 23 0.01
514 13 0.00
515 10 0.00
516 3 0.00
517 12 0.00
518 3 0.00
519 7 0.00
520 5 0.00
521 8 0.00
522 10 0.00
523 449 0.12
524 5 0.00
525 6 0.00
526 217 0.06
527 4 0.00
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.34
Consensus pattern (474 bp):
ATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTTAAGATTGGGAACCAAAATCACAT
TCCCTTCATTAGGATACATGACATTGATGCTTTAGGGTCGAAGAAATGCTTTTCTCTTCGACGTT
TTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCAACTC
CTTTCAGCATTACGCACCATAAACATAGTCTTCTCAGAAGGATACATGACACCGATGATTTGGTC
TTGAAACAAAGGCTCTCTTCCCCCCAATTTTTATAAAGTCTAAGTTCGTGCCTCAAACGAGCCAA
ACATGGATTATAGTAATGATCGTCATTATTTTGGGATTAGGCACTAAAAACACATTTCCCTCATA
AGGATAAATGATATTAATGATTTTCTTCGGCATGGAAATCATTTCCTTGCCCTATTTTCCTTAAA
ATCAAAATCAATCACCTAA
Found at i:326203 original size:28 final size:28
Alignment explanation
Indices: 326098--326750 Score: 457
Period size: 28 Copynumber: 22.2 Consensus size: 28
326088 ACAGTGGTGA
326098 TTTGAAAAGGGTTGCCA-TCGACTTGCGTGGGC
1 TTTG-AAAGGG-TGCCACT-GACTT--GTGGGC
* * *
326130 TTTTAAAGGGTGCCATTGACTTATGGGC
1 TTTGAAAGGGTGCCACTGACTTGTGGGC
***
326158 TTTGAAAAGAAAGCCACTGACTTGTGGGC
1 TTTG-AAAGGGTGCCACTGACTTGTGGGC
*
326187 TTTGAAAGGGTGCCACTGACTTGTGAGC
1 TTTGAAAGGGTGCCACTGACTTGTGGGC
* *
326215 TTTGAAAGGGTACCACTGACTTATGGGC
1 TTTGAAAGGGTGCCACTGACTTGTGGGC
*
326243 TTTGAAAGGATGCCACTGACTTGT-GGC
1 TTTGAAAGGGTGCCACTGACTTGTGGGC
* * **
326270 TTTGAAAAGAGTTGCCACCGACTCATGGGC
1 TTTG-AAAG-GGTGCCACTGACTTGTGGGC
* * *
326300 TTTGAAAGGAGTTGCCACCGACTCGTAGGC
1 TTTGAAAGG-G-TGCCACTGACTTGTGGGC
* *
326330 TTTGAAAGGATGCCACTGACTAGTGGGC
1 TTTGAAAGGGTGCCACTGACTTGTGGGC
*
326358 TTTGAAAGGGTGTCACTGACTTGTGGGC
1 TTTGAAAGGGTGCCACTGACTTGTGGGC
*
326386 TTTGAAAGGGTGTCACTGACTTGTGGGC
1 TTTGAAAGGGTGCCACTGACTTGTGGGC
* * *
326414 TTTGAAAGGATGCCACTAACTTGTGGGT
1 TTTGAAAGGGTGCCACTGACTTGTGGGC
*
326442 TTTGAAAAGGTGCCAGC-GACTTGTGGGC
1 TTTGAAAGGGTGCCA-CTGACTTGTGGGC
* * * *
326470 TTTGAAAAGATGCCACCGACTTGTGGGT
1 TTTGAAAGGGTGCCACTGACTTGTGGGC
**
326498 TTTGAAATGGGTTGCCACCAACTTGTGTGGGC
1 TTTGAAA-GGG-TGCCACTGAC-T-TGTGGGC
* **
326530 TTTAAAATGGGTTGCCACCAACTTGTGTGGGC
1 TTTGAAA-GGG-TGCCACTGAC-T-TGTGGGC
* **
326562 TTTCAAATGGGTTGCCACCAACTTGTGTGGGC
1 TTTGAAA-GGG-TGCCACTGAC-T-TGTGGGC
* * *
326594 TTTCAAATGAGTTGCCACCGACTTGTGTGGGC
1 TTTGAAA-G-GGTGCCACTGAC-T-TGTGGGC
* * * *
326626 TTTCAATGAGTTGCCACCGACTTGTGTGGGC
1 TTTGAAAG-GGTGCCACTGAC-T-TGTGGGC
* * * **
326657 TTTCAATGAGTTGCCACCAACTTGTGTGGGC
1 TTTGAAAG-GGTGCCACTGAC-T-TGTGGGC
* * * *
326688 TTTGAAATGATGCCACTAACTTGTAGGC
1 TTTGAAAGGGTGCCACTGACTTGTGGGC
* * * *
326716 TTTAAAATGGGTTACCACCGACTTGTGGGA
1 TTTGAAA-GGG-TGCCACTGACTTGTGGGC
326746 TTTGA
1 TTTGA
326751 GAAGATGAAT
Statistics
Matches: 538, Mismatches: 67, Indels: 34
0.84 0.10 0.05
Matches are distributed among these distances:
27 8 0.01
28 236 0.44
29 43 0.08
30 78 0.14
31 67 0.12
32 105 0.20
33 1 0.00
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.30
Consensus pattern (28 bp):
TTTGAAAGGGTGCCACTGACTTGTGGGC
Found at i:326390 original size:171 final size:170
Alignment explanation
Indices: 326098--326504 Score: 534
Period size: 171 Copynumber: 2.4 Consensus size: 170
326088 ACAGTGGTGA
* * ** *
326098 TTTGAAAAGGGTTGCCATCGACTTGCGTGGGCTTTTAAAGG-GTGCCATTGACTTATGGGCTTTG
1 TTTGAAAA-GGTTGCCACCGAC-T-CGTGGGCTTTGAAAGGAGTGCCACCGACTTGTGGGCTTTG
*
326162 AAAAGAAAGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGAGCTTTGAAAGGGTA
63 -AAAGAAAGCCACTGACTAGTGGGCTTTGAAAGGGTGCCACTGACTTGTGAGCTTTGAAAGGGTA
*
326227 CCACTGACTTATGGGCTTTGAAAGGATGCCACTGACTTGT-GGC
127 CCACTGACTTATGGGCTTTGAAAGGATGCCACTAACTTGTGGGC
* * *
326270 TTTGAAAAGAGTTGCCACCGACTCATGGGCTTTGAAAGGAGTTGCCACCGACTCGTAGGCTTTGA
1 TTTGAAAAG-GTTGCCACCGACTCGTGGGCTTTGAAAGGAG-TGCCACCGACTTGTGGGCTTTGA
* * * * **
326335 AAGGATGCCACTGACTAGTGGGCTTTGAAAGGGTGTCACTGACTTGTGGGCTTTGAAAGGGTGTC
64 AAGAAAGCCACTGACTAGTGGGCTTTGAAAGGGTGCCACTGACTTGTGAGCTTTGAAAGGGTACC
* *
326400 ACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGT
129 ACTGACTTATGGGCTTTGAAAGGATGCCACTAACTTGTGGGC
* * * *
326442 TTTGAAAAGG-TGCCAGCGACTTGTGGGCTTTGAAAAGA-TGCCACCGACTTGTGGGTTTTGAAA
1 TTTGAAAAGGTTGCCACCGACTCGTGGGCTTTGAAAGGAGTGCCACCGACTTGTGGGCTTTGAAA
326505 TGGGTTGCCA
Statistics
Matches: 206, Mismatches: 25, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
168 22 0.11
170 38 0.18
171 99 0.48
172 47 0.23
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (170 bp):
TTTGAAAAGGTTGCCACCGACTCGTGGGCTTTGAAAGGAGTGCCACCGACTTGTGGGCTTTGAAA
GAAAGCCACTGACTAGTGGGCTTTGAAAGGGTGCCACTGACTTGTGAGCTTTGAAAGGGTACCAC
TGACTTATGGGCTTTGAAAGGATGCCACTAACTTGTGGGC
Found at i:326538 original size:32 final size:31
Alignment explanation
Indices: 326491--326742 Score: 305
Period size: 32 Copynumber: 8.1 Consensus size: 31
326481 GCCACCGACT
*
326491 TGTGGGTTTTGAAATGGGTTGCCACCAACTTG
1 TGTGGGCTTT-AAATGGGTTGCCACCAACTTG
326523 TGTGGGCTTTAAAATGGGTTGCCACCAACTTG
1 TGTGGGCTTT-AAATGGGTTGCCACCAACTTG
326555 TGTGGGCTTTCAAATGGGTTGCCACCAACTTG
1 TGTGGGCTTT-AAATGGGTTGCCACCAACTTG
* *
326587 TGTGGGCTTTCAAATGAGTTGCCACCGACTTG
1 TGTGGGCTTT-AAATGGGTTGCCACCAACTTG
* * *
326619 TGTGGGCTTTCAATGAGTTGCCACCGACTTG
1 TGTGGGCTTTAAATGGGTTGCCACCAACTTG
* *
326650 TGTGGGCTTTCAATGAGTTGCCACCAACTTG
1 TGTGGGCTTTAAATGGGTTGCCACCAACTTG
* *
326681 TGTGGGCTTTGAAAT--GATGCCACTAAC-T-
1 TGTGGGCTTT-AAATGGGTTGCCACCAACTTG
* * *
326709 TGTAGGCTTTAAAATGGGTTACCACCGACTTG
1 TGTGGGCTTT-AAATGGGTTGCCACCAACTTG
326741 TG
1 TG
326743 GGATTTGAGA
Statistics
Matches: 199, Mismatches: 16, Indels: 10
0.88 0.07 0.04
Matches are distributed among these distances:
28 13 0.07
29 1 0.01
30 18 0.09
31 61 0.31
32 106 0.53
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.32
Consensus pattern (31 bp):
TGTGGGCTTTAAATGGGTTGCCACCAACTTG
Found at i:328549 original size:51 final size:52
Alignment explanation
Indices: 328488--328604 Score: 146
Period size: 52 Copynumber: 2.3 Consensus size: 52
328478 AAATAACAAG
**
328488 GTTGGAGTATCCTTGA-TTATAGAAAATCGATATTTTAAAAATAAAATCGAA
1 GTTGGAGTATCCCCGATTTATAGAAAATCGATATTTTAAAAATAAAATCGAA
* * * * * **
328539 GTTGGAGTATCCCCGATTTGTGGAAAATTGGTATTTTAGAAATAAAATCGGG
1 GTTGGAGTATCCCCGATTTATAGAAAATCGATATTTTAAAAATAAAATCGAA
328591 GTTGGAGTATCCCC
1 GTTGGAGTATCCCC
328605 TCGGAAATAA
Statistics
Matches: 56, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
51 14 0.25
52 42 0.75
ACGTcount: A:0.34, C:0.11, G:0.22, T:0.32
Consensus pattern (52 bp):
GTTGGAGTATCCCCGATTTATAGAAAATCGATATTTTAAAAATAAAATCGAA
Found at i:328618 original size:28 final size:27
Alignment explanation
Indices: 328587--328661 Score: 89
Period size: 28 Copynumber: 2.7 Consensus size: 27
328577 GAAATAAAAT
328587 CGGGGTTGGAGTATCCCCTCG-GAAATAA
1 CGGGGTTGGAGTAT--CCTCGAGAAATAA
* *
328615 CGGGATTAGAGTATCCTCGATGAAATAA
1 CGGGGTTGGAGTATCCTCGA-GAAATAA
*
328643 CGGGGTTGGAGTACCCTCG
1 CGGGGTTGGAGTATCCTCG
328662 TTTATGAAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
26 5 0.12
28 35 0.88
ACGTcount: A:0.25, C:0.20, G:0.32, T:0.23
Consensus pattern (27 bp):
CGGGGTTGGAGTATCCTCGAGAAATAA
Found at i:328737 original size:28 final size:28
Alignment explanation
Indices: 328697--328767 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
328687 ATATAAAGCT
* ** *
328697 GGGGTCGGAGTATCCTCTCGGAAGTAAC
1 GGGGTTGGAGTATCCTCGAGGAAATAAC
* *
328725 GGGTTTGGAGTATCCTCGATGAAATAAC
1 GGGGTTGGAGTATCCTCGAGGAAATAAC
328753 GGGGTTGGAGTATCC
1 GGGGTTGGAGTATCC
328768 CCAATTATGA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.23, C:0.17, G:0.35, T:0.25
Consensus pattern (28 bp):
GGGGTTGGAGTATCCTCGAGGAAATAAC
Found at i:328869 original size:28 final size:28
Alignment explanation
Indices: 328805--328873 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
328795 GATATAAAGC
328805 CGGGGTTGGAGTATCCTCTCGAAAATAA
1 CGGGGTTGGAGTATCCTCTCGAAAATAA
* *
328833 CAGGATTGGAGTAT-C-CTCGATGAAATAA
1 CGGGGTTGGAGTATCCTCTCGA--AAATAA
328861 CGGGGTTGGAGTA
1 CGGGGTTGGAGTA
328874 CCCCCTATTG
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
26 5 0.14
27 1 0.03
28 29 0.83
ACGTcount: A:0.29, C:0.14, G:0.32, T:0.25
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCTCTCGAAAATAA
Found at i:328888 original size:109 final size:109
Alignment explanation
Indices: 328572--328891 Score: 462
Period size: 109 Copynumber: 2.9 Consensus size: 109
328562 AAAATTGGTA
* ** * *
328572 TTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCGGAAATAACGGGATTAGAGTATCCTCGATG
1 TTTTAGATATAAAGCCGGGGTTGGAGTATCCTCTCGGAAATAACGGGATTGGAGTATCCTCGATG
* * *
328637 AAATAACGGGGTTGGAGTACCCTCGT-TTATGAAAAAAATAATAT
66 AAATAACGGGGTTGGAGTACCC-CCTATTATGAAAAATACAATAT
* * * *
328681 TTTTAGATATAAAGCTGGGGTCGGAGTATCCTCTCGGAAGTAACGGGTTTGGAGTATCCTCGATG
1 TTTTAGATATAAAGCCGGGGTTGGAGTATCCTCTCGGAAATAACGGGATTGGAGTATCCTCGATG
* * *
328746 AAATAACGGGGTTGGAGTATCCCCAATTATGAAAAATACATTAT
66 AAATAACGGGGTTGGAGTACCCCCTATTATGAAAAATACAATAT
* *
328790 TTTTAGATATAAAGCCGGGGTTGGAGTATCCTCTCGAAAATAACAGGATTGGAGTATCCTCGATG
1 TTTTAGATATAAAGCCGGGGTTGGAGTATCCTCTCGGAAATAACGGGATTGGAGTATCCTCGATG
*
328855 AAATAACGGGGTTGGAGTACCCCCTATTGTGAAAAAT
66 AAATAACGGGGTTGGAGTACCCCCTATTATGAAAAAT
328892 TGGTGTTTTG
Statistics
Matches: 186, Mismatches: 24, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
108 1 0.01
109 185 0.99
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (109 bp):
TTTTAGATATAAAGCCGGGGTTGGAGTATCCTCTCGGAAATAACGGGATTGGAGTATCCTCGATG
AAATAACGGGGTTGGAGTACCCCCTATTATGAAAAATACAATAT
Found at i:329008 original size:51 final size:51
Alignment explanation
Indices: 328865--329032 Score: 151
Period size: 51 Copynumber: 3.3 Consensus size: 51
328855 AAATAACGGG
* * ** * *
328865 GTTGGAGTACCCCCTATTGTGAAAAATTGGTGTTTTGGCAATAAAATCGGA
1 GTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTGGAAATAAAATCGGA
* ** ** * * *
328916 GTTAGAGTATCCCCGATTGCGGTAAATCGATGCTTTAGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTGGAAATAAAATCGGA
* * **
328967 GTTGGAGTATCCCTGATTAAGAAAAATTGACGTTTTGGAAATGGAA-CGG-
1 GTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTGGAAATAAAATCGGA
329016 GATTGGAGTATCCCCGA
1 G-TTGGAGTATCCCCGA
329033 GATGAAAAAT
Statistics
Matches: 92, Mismatches: 24, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
49 1 0.01
50 17 0.18
51 74 0.80
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTGGAAATAAAATCGGA
Found at i:331359 original size:20 final size:19
Alignment explanation
Indices: 331334--331407 Score: 85
Period size: 20 Copynumber: 3.7 Consensus size: 19
331324 AAAATACCTG
* *
331334 AATGTATCAATACATTGTAA
1 AATGTATCGATACAATG-AA
*
331354 AATGTATCGATACAATGAGC
1 AATGTATCGATACAATGA-A
331374 AATGTATCGATACAATGCAA
1 AATGTATCGATACAATG-AA
*
331394 AATGTATAGATACA
1 AATGTATCGATACA
331408 TCTGGGTAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
19 1 0.02
20 45 0.96
21 1 0.02
ACGTcount: A:0.45, C:0.12, G:0.15, T:0.28
Consensus pattern (19 bp):
AATGTATCGATACAATGAA
Found at i:332082 original size:42 final size:43
Alignment explanation
Indices: 332004--332162 Score: 126
Period size: 43 Copynumber: 3.9 Consensus size: 43
331994 GACGACAAAG
* *
332004 GAAAAGAGAATGAAATAGGTCTTGCTCCTTGAGGACAAAGGAA
1 GAAAAGAGAAAGAAATAGGTCCTGCTCCTTGAGGACAAAGGAA
* *
332047 GAAAAGA-AAAGAAA-AGTGTCCTGCTTCTTGAGGACAAA-G-T
1 GAAAAGAGAAAGAAATAG-GTCCTGCTCCTTGAGGACAAAGGAA
* *
332087 GAAAA-AG--AG---TACGTCCTGCAT-TTTGAGGACAAAGGAA
1 GAAAAGAGAAAGAAATAGGTCCTGC-TCCTTGAGGACAAAGGAA
* * *
332124 -AAAAGGGAAACGAAATACGTCCTGCTCTTTGAGGACAAA
1 GAAAAGAGAAA-GAAATAGGTCCTGCTCCTTGAGGACAAA
332163 AGAAAGAGGA
Statistics
Matches: 94, Mismatches: 8, Indels: 28
0.72 0.06 0.22
Matches are distributed among these distances:
35 18 0.19
36 7 0.07
37 1 0.01
38 2 0.02
39 2 0.02
40 6 0.06
41 3 0.03
42 26 0.28
43 29 0.31
ACGTcount: A:0.42, C:0.14, G:0.26, T:0.19
Consensus pattern (43 bp):
GAAAAGAGAAAGAAATAGGTCCTGCTCCTTGAGGACAAAGGAA
Found at i:332417 original size:63 final size:62
Alignment explanation
Indices: 332177--332424 Score: 277
Period size: 61 Copynumber: 4.0 Consensus size: 62
332167 AGAGGAAAAT
* ** * *
332177 AAAGTGTGTCCTACTCTTTAAGGACAAAAAAAAATGCCACCAACTCGTGTGGGCTTTGAAA-AAG
1 AAAG-GTGTCCTGCTCTTTAAGGAC--TGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGAG
* ** *
332241 AAAGGTGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGCAAGGAG
1 AAAGGTGTCCTGCTCTTTAAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGAG
* * * * *
332303 AAA-ATATCCTGCTTTTTAAGGACTGGAAAATGCCACCAACTTGGGTGGGCTTTGAAAGGA-
1 AAAGGTGTCCTGCTCTTTAAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGAG
* * *
332363 AAAGGCGTCCTGCTCTTTAAGGACTTAGAAAAATGCCACCAACTTGTGCGGGCTTTAAAAGG
1 AAAGGTGTCCTGCTCTTTAAGGAC-T-GAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGG
332425 CATCCTGCTG
Statistics
Matches: 154, Mismatches: 26, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
60 3 0.02
61 92 0.60
62 6 0.04
63 49 0.32
64 4 0.03
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (62 bp):
AAAGGTGTCCTGCTCTTTAAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGAG
Found at i:332591 original size:152 final size:154
Alignment explanation
Indices: 332297--332596 Score: 354
Period size: 157 Copynumber: 1.9 Consensus size: 154
332287 TGGGCTTTGC
* *
332297 AAGGAGAAAATATCCTGCTTTTTAAGGACTGGAAAATGCCACCAACTTGGGTGGGCTTTGAAAGG
1 AAGGAGAAAATATCCTGCTCTTTAAGGACTGGAAAATGCCACCAACTTGGGTGGGCTTT---ACG
* * * * * *
332362 AAAAGGCGTCCTGCTCTTTAAGGACTTAGAAAAATGCCACCAACTTGTGCGGGCTTTAAAAGGCA
63 AAAAGGCATCCTGCTATTTAAGGACTAAAAAAAATGCCACCAACTTGTGCAGGCATTAAAAGGCA
332427 TCCTGCTGTTTGAGGACTAAAGAGCAA
128 TCCTGCTGTTTGAGGACTAAAGAGCAA
* * * * * * *
332454 AAGGAGAGAGTATCTTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGC-TT-CGAAA
1 AAGGAGAAAATATCCTGCTCTTTAAGGACTGGAAAATGCCACCAACTTGGGTGGGCTTTACGAAA
* * ** *
332517 A-GCATCCTGCTATTTGAGGACTAAAAAAAATTGCCACCGACTTGTTTAGGCATTGAAAGGCATC
66 AGGCATCCTGCTATTTAAGGACTAAAAAAAA-TGCCACCAACTTGTGCAGGCATTAAAAGGCATC
*
332581 CTGCTTTTTGAGGACT
130 CTGCTGTTTGAGGACT
332597 GAAGGGTGCC
Statistics
Matches: 121, Mismatches: 21, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
151 24 0.20
152 47 0.39
156 2 0.02
157 48 0.40
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.26
Consensus pattern (154 bp):
AAGGAGAAAATATCCTGCTCTTTAAGGACTGGAAAATGCCACCAACTTGGGTGGGCTTTACGAAA
AGGCATCCTGCTATTTAAGGACTAAAAAAAATGCCACCAACTTGTGCAGGCATTAAAAGGCATCC
TGCTGTTTGAGGACTAAAGAGCAA
Found at i:332646 original size:54 final size:54
Alignment explanation
Indices: 332489--332656 Score: 174
Period size: 58 Copynumber: 3.0 Consensus size: 54
332479 GGACTGGGAA
* **
332489 GTGCCACCAACTTGTGTGGGCTTCGAAAAGCATCCTGCTATTTGAGGACTAAAAAAAA
1 GTGCCACCAACTTGTGTGGGCTT-GAAAGGCATCCTGCTATTTGAGGACT---AAAGG
* * * * * *
332547 TTGCCACCGACTTGTTTAGGCATTGAAAGGCATCCTGCTTTTTGAGGACTGAAGG
1 GTGCCACCAACTTGTGTGGGC-TTGAAAGGCATCCTGCTATTTGAGGACTAAAGG
* * **
332602 GTGCCACCAACTTGTGTGGGCTTTAAAGGCGTCCTGCTCCTTGAGGACTAAAGG
1 GTGCCACCAACTTGTGTGGGCTTGAAAGGCATCCTGCTATTTGAGGACTAAAGG
332656 G
1 G
332657 CGAAAGGAGA
Statistics
Matches: 91, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
54 29 0.32
55 19 0.21
58 41 0.45
59 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (54 bp):
GTGCCACCAACTTGTGTGGGCTTGAAAGGCATCCTGCTATTTGAGGACTAAAGG
Found at i:332833 original size:55 final size:54
Alignment explanation
Indices: 332759--332867 Score: 146
Period size: 54 Copynumber: 2.0 Consensus size: 54
332749 CTAAGAAAAA
* * * * * *
332759 TGCCACCGACTTGTTTGGGCTTTGAAAGGCTTCCTGCTCTTTAAGGACTGAAGGG
1 TGCCACCAACTTGTGTGGGCTTT-AAAGACGTCCTGCTCCTTAAGGACTAAAGGG
*
332814 TGCCACCAACTTGTGTGGGCTTTAAAGACGTCCTGCTCCTTGAGGACTAAAGGG
1 TGCCACCAACTTGTGTGGGCTTTAAAGACGTCCTGCTCCTTAAGGACTAAAGGG
332868 CGAAAGGAGA
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
54 26 0.55
55 21 0.45
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.28
Consensus pattern (54 bp):
TGCCACCAACTTGTGTGGGCTTTAAAGACGTCCTGCTCCTTAAGGACTAAAGGG
Found at i:332848 original size:211 final size:211
Alignment explanation
Indices: 332247--333629 Score: 2032
Period size: 211 Copynumber: 6.6 Consensus size: 211
332237 AAAGAAAGGT
* ** **
332247 GTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGCAAGGAGAAAATATC
1 GTCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATC
* * * * *
332311 CTGCTTTTTAAGGACT--GGAAAATGCCACCAACTTGGGTGGGCTTTGAAAGGAAAAGGCGTCCT
65 CTGCTCTTTGAGGACTAAGAAAAATGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCATCCT
*** * * **
332374 GCTCTTTAAGGACTTAGAAAAATGCCACCAACTTGTGCGGGCTTTAAAAGGCATCCTGCTGTTTG
124 GCTCTTTAAGGAC-T-GAAGGGTGCCACCAACTTGTGTGGGCTTT-AAAGGCGTCCTGCTCCTTG
* * *
332439 AGGACTAAAGAGCAAAAGGAGAGAGT
186 AGGACTAAAGGGCGAAAGGAGAGAGC
* * * *
332465 ATCTTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGC-TT----CGA-AAAGCATCC
1 GTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCC
* * * * * * *
332524 TGCTATTTGAGGACTAAAAAAAATTGCCACCGACTTGTTTAGGCATTGAAAGGCATCCTGCTTTT
66 TGCTCTTTGAGGACTAAGAAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTT
*
332589 TGAGGACTGAAGGGTGCCACCAACTTGTGTGGGCTTTAAAGGCGTCCTGCTCCTTGAGGACTAAA
130 TAAGGACTGAAGGGTGCCACCAACTTGTGTGGGCTTTAAAGGCGTCCTGCTCCTTGAGGACTAAA
332654 GGGCGAAAGGAGAGAGC
195 GGGCGAAAGGAGAGAGC
* * * *
332671 GTCTTGCTCTTTGAGGACTAGGAAGTGCCACCAATTTGTGTGGGCTTTAAAAGGAGAAACCATCT
1 GTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCC
* * *
332736 TGCTCTTTGAGGACTAAGAAAAATGCCACCGACTTGTTTGGGCTTTGAAAGGCTTCCTGCTCTTT
66 TGCTCTTTGAGGACTAAGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTTT
*
332801 AAGGACTGAAGGGTGCCACCAACTTGTGTGGGCTTTAAAGACGTCCTGCTCCTTGAGGACTAAAG
131 AAGGACTGAAGGGTGCCACCAACTTGTGTGGGCTTTAAAGGCGTCCTGCTCCTTGAGGACTAAAG
332866 GGCGAAAGGAGAGAGC
196 GGCGAAAGGAGAGAGC
332882 GTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCC
1 GTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCC
* *
332947 TGCTCTTTGAGGACTAAAAAAAATGCCACCAACTTGTGTGGCCTTTGAAAGGCATCCTGCTCTTT
66 TGCTCTTTGAGGACTAAGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTTT
* * *
333012 GAGGACTGAAGGGTGCCACCAACTTGTGTGGGCTTTAAAGGTGTCCTGCTCTTTGAGGACTAAAG
131 AAGGACTGAAGGGTGCCACCAACTTGTGTGGGCTTTAAAGGCGTCCTGCTCCTTGAGGACTAAAG
333077 GGCGAAAGGAGAGAGC
196 GGCGAAAGGAGAGAGC
* * *
333093 GTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGAGTGGGCTTTAAAAGGAGAAACCATCT
1 GTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCC
* *
333158 TGCTCTTTGAGGACTAAGAAAAATGCCACCGACTTGTTTGGGCTTTGAAAGGCATCCTGCTCTTT
66 TGCTCTTTGAGGACTAAGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTTT
*
333223 AAGGACTGAAGGGTGCCACCAACTTGTGTGGGCTTTAAAGACGTCCTGCTCCTTGAGGACTAAAG
131 AAGGACTGAAGGGTGCCACCAACTTGTGTGGGCTTTAAAGGCGTCCTGCTCCTTGAGGACTAAAG
333288 GGCGAAAGGAGAGAGC
196 GGCGAAAGGAGAGAGC
*
333304 GTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCA
1 GTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCC
* * * *
333369 TGCTCTTTGAGGACTAAAAAAAATGCCACCAACTTGTATGGCCTTTGAAAGGCATCCTACTCTTT
66 TGCTCTTTGAGGACTAAGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTTT
* * *
333434 GAGGACTGAAGGGTGCCACCAACTTGTGTGGGCTTTAAAGGTGTCCTGCTCTTTGAGGACTAAAG
131 AAGGACTGAAGGGTGCCACCAACTTGTGTGGGCTTTAAAGGCGTCCTGCTCCTTGAGGACTAAAG
333499 GGCGAAAGGAGAGAGC
196 GGCGAAAGGAGAGAGC
* *
333515 GTTCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAATGGAGAAAGCATCC
1 GTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCC
*
333580 TGCTCTTTGAGGACT--GGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGG
66 TGCTCTTTGAGGACTAAGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGG
333630 AAAAGGCGTC
Statistics
Matches: 1070, Mismatches: 85, Indels: 29
0.90 0.07 0.02
Matches are distributed among these distances:
206 81 0.08
207 27 0.03
208 1 0.00
209 52 0.05
210 1 0.00
211 793 0.74
212 48 0.04
213 2 0.00
214 4 0.00
215 18 0.02
217 2 0.00
218 38 0.04
219 3 0.00
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.26
Consensus pattern (211 bp):
GTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCC
TGCTCTTTGAGGACTAAGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTTT
AAGGACTGAAGGGTGCCACCAACTTGTGTGGGCTTTAAAGGCGTCCTGCTCCTTGAGGACTAAAG
GGCGAAAGGAGAGAGC
Found at i:333016 original size:57 final size:57
Alignment explanation
Indices: 332937--333075 Score: 187
Period size: 55 Copynumber: 2.5 Consensus size: 57
332927 TTTAAAAGGA
332937 GAAA-GCATCCTGCTCTTTGAGGACTAAAAAAAATGCCACCAACTTGTGTGGCCTTT
1 GAAAGGCATCCTGCTCTTTGAGGACTAAAAAAAATGCCACCAACTTGTGTGGCCTTT
* *** *
332993 GAAAGGCATCCTGCTCTTTGAGGACT--GAAGGGTGCCACCAACTTGTGTGGGCTTT
1 GAAAGGCATCCTGCTCTTTGAGGACTAAAAAAAATGCCACCAACTTGTGTGGCCTTT
**
333048 -AAAGGTGTCCTGCTCTTTGAGGACTAAA
1 GAAAGGCATCCTGCTCTTTGAGGACTAAA
333076 GGGCGAAAGG
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
54 23 0.32
55 24 0.33
56 4 0.06
57 21 0.29
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (57 bp):
GAAAGGCATCCTGCTCTTTGAGGACTAAAAAAAATGCCACCAACTTGTGTGGCCTTT
Found at i:333070 original size:54 final size:55
Alignment explanation
Indices: 332937--333078 Score: 189
Period size: 54 Copynumber: 2.6 Consensus size: 55
332927 TTTAAAAGGA
***
332937 GAAA-GCATCCTGCTCTTTGAGGACTAAAAAAAATGCCACCAACTTGTGTGGCCTTT
1 GAAAGGCATCCTGCTCTTTGAGGACT--AAAGGGTGCCACCAACTTGTGTGGCCTTT
* *
332993 GAAAGGCATCCTGCTCTTTGAGGACTGAAGGGTGCCACCAACTTGTGTGGGCTTT
1 GAAAGGCATCCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTGTGGCCTTT
**
333048 -AAAGGTGTCCTGCTCTTTGAGGACTAAAGGG
1 GAAAGGCATCCTGCTCTTTGAGGACTAAAGGG
333079 CGAAAGGAGA
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
54 28 0.36
55 24 0.31
56 4 0.05
57 21 0.27
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (55 bp):
GAAAGGCATCCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTGTGGCCTTT
Found at i:333255 original size:55 final size:54
Alignment explanation
Indices: 333181--333289 Score: 146
Period size: 54 Copynumber: 2.0 Consensus size: 54
333171 CTAAGAAAAA
* * * * *
333181 TGCCACCGACTTGTTTGGGCTTTGAAAGGCATCCTGCTCTTTAAGGACTGAAGGG
1 TGCCACCAACTTGTGTGGGCTTT-AAAGACATCCTGCTCCTTAAGGACTAAAGGG
* *
333236 TGCCACCAACTTGTGTGGGCTTTAAAGACGTCCTGCTCCTTGAGGACTAAAGGG
1 TGCCACCAACTTGTGTGGGCTTTAAAGACATCCTGCTCCTTAAGGACTAAAGGG
333290 CGAAAGGAGA
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
54 26 0.55
55 21 0.45
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (54 bp):
TGCCACCAACTTGTGTGGGCTTTAAAGACATCCTGCTCCTTAAGGACTAAAGGG
Found at i:333490 original size:54 final size:55
Alignment explanation
Indices: 333392--333500 Score: 157
Period size: 54 Copynumber: 2.0 Consensus size: 55
333382 CTAAAAAAAA
*
333392 TGCCACCAACTTGTATGGCCTTTGAAAGGCATCCTACTCTTTGAGGACTGAAGGG
1 TGCCACCAACTTGTATGGCCTTTGAAAGGCATCCTACTCTTTGAGGACTAAAGGG
* * ** *
333447 TGCCACCAACTTGTGTGGGCTTT-AAAGGTGTCCTGCTCTTTGAGGACTAAAGGG
1 TGCCACCAACTTGTATGGCCTTTGAAAGGCATCCTACTCTTTGAGGACTAAAGGG
333501 CGAAAGGAGA
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
54 27 0.56
55 21 0.44
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (55 bp):
TGCCACCAACTTGTATGGCCTTTGAAAGGCATCCTACTCTTTGAGGACTAAAGGG
Found at i:333605 original size:61 final size:61
Alignment explanation
Indices: 333518--333661 Score: 204
Period size: 61 Copynumber: 2.4 Consensus size: 61
333508 AGAGAGCGTT
*
333518 CTGCTCTTTGAGGACTAGG-AAGTGCCACCAACTTGTGTGGGCTTT-AAATGGAGAAA-GCATC
1 CTGCTCTTTGAGGACT-GGAAAATGCCACCAACTTGTGTGGGCTTTGAAA-GGA-AAAGGCATC
*
333579 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCGTC
1 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCATC
* *
333640 CTGCTTTTTGAGGACTAGAAAA
1 CTGCTCTTTGAGGACTGGAAAA
333662 GTGAAAGGAG
Statistics
Matches: 76, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
60 5 0.07
61 68 0.89
62 3 0.04
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (61 bp):
CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCATC
Found at i:334653 original size:1 final size:1
Alignment explanation
Indices: 334649--334704 Score: 58
Period size: 1 Copynumber: 56.0 Consensus size: 1
334639 TTTTTTCCTC
* * * * * *
334649 TTTTTTTGTTTTTTTTTGTTTTTTTTGTTATTTTTTTTGTTTTTTTGTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
334705 AAAAGAATGT
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.02, C:0.00, G:0.09, T:0.89
Consensus pattern (1 bp):
T
Found at i:334660 original size:21 final size:18
Alignment explanation
Indices: 334649--334704 Score: 85
Period size: 19 Copynumber: 2.9 Consensus size: 18
334639 TTTTTTCCTC
334649 TTTTTTTGTTTTTTTTTGT
1 TTTTTTTGTTTTTTTTT-T
334668 TTTTTTTGTTATTTTTTTT
1 TTTTTTTGTT-TTTTTTTT
334687 GTTTTTTTGTTTTTTTTT
1 -TTTTTTTGTTTTTTTTT
334705 AAAAGAATGT
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
19 18 0.51
20 17 0.49
ACGTcount: A:0.02, C:0.00, G:0.09, T:0.89
Consensus pattern (18 bp):
TTTTTTTGTTTTTTTTTT
Found at i:334661 original size:9 final size:9
Alignment explanation
Indices: 334649--334703 Score: 74
Period size: 10 Copynumber: 5.8 Consensus size: 9
334639 TTTTTTCCTC
334649 TTTTTTTGTT
1 TTTTTTTG-T
334659 TTTTTTTGT
1 TTTTTTTGT
334668 TTTTTTTGT
1 TTTTTTTGT
*
334677 TATTTTTTTT
1 T-TTTTTTGT
334687 GTTTTTTTGT
1 -TTTTTTTGT
334697 TTTTTTT
1 TTTTTTT
334704 TAAAAGAATG
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
9 18 0.44
10 22 0.54
11 1 0.02
ACGTcount: A:0.02, C:0.00, G:0.09, T:0.89
Consensus pattern (9 bp):
TTTTTTTGT
Found at i:334662 original size:20 final size:18
Alignment explanation
Indices: 334637--334703 Score: 71
Period size: 19 Copynumber: 3.4 Consensus size: 18
334627 AGATTCTTCT
334637 TTTTTTTTCCTCTTTTTTTG
1 TTTTTTTT-CT-TTTTTTTG
*
334657 TTTTTTTTTGTTTTTTTTG
1 -TTTTTTTTCTTTTTTTTG
*
334676 TTATTTTTTTTGTTTTTTTG
1 TT-TTTTTTCT-TTTTTTTG
334696 TTTTTTTT
1 TTTTTTTT
334704 TAAAAGAATG
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
18 2 0.05
19 21 0.50
20 11 0.26
21 8 0.19
ACGTcount: A:0.01, C:0.04, G:0.07, T:0.87
Consensus pattern (18 bp):
TTTTTTTTCTTTTTTTTG
Found at i:334674 original size:31 final size:28
Alignment explanation
Indices: 334649--334704 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 28
334639 TTTTTTCCTC
*
334649 TTTTTTTGTTTTTTTTTGTTTTTTTTGTTA
1 TTTTTTT-TGTTTTTTTGTTTTTTTT-TTA
334679 TTTTTTTTGTTTTTTTGTTTTTTTTT
1 TTTTTTTTGTTTTTTTGTTTTTTTTT
334705 AAAAGAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 1 0.04
29 17 0.68
30 7 0.28
ACGTcount: A:0.02, C:0.00, G:0.09, T:0.89
Consensus pattern (28 bp):
TTTTTTTTGTTTTTTTGTTTTTTTTTTA
Found at i:347211 original size:51 final size:52
Alignment explanation
Indices: 347150--347266 Score: 148
Period size: 52 Copynumber: 2.3 Consensus size: 52
347140 AAATAACAAG
*
347150 GTTGGAGTATCCCTGA-TTATAGAAAATCGGTATTTT-GAAAATAAAATCAGA
1 GTTGGAGTATCCCCGATTTATAGAAAATCGGTATTTTAG-AAATAAAATCAGA
* * * * *
347201 GTTGGAGTATCCCCGATTTGTGGAAAATTGGTATTTTAGAAATAAAATCGGG
1 GTTGGAGTATCCCCGATTTATAGAAAATCGGTATTTTAGAAATAAAATCAGA
*
347253 GTTGAAGTATCCCC
1 GTTGGAGTATCCCC
347267 TCGGAAATAA
Statistics
Matches: 57, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
51 15 0.26
52 41 0.72
53 1 0.02
ACGTcount: A:0.33, C:0.12, G:0.23, T:0.32
Consensus pattern (52 bp):
GTTGGAGTATCCCCGATTTATAGAAAATCGGTATTTTAGAAATAAAATCAGA
Found at i:347280 original size:28 final size:28
Alignment explanation
Indices: 347249--347322 Score: 73
Period size: 28 Copynumber: 2.6 Consensus size: 28
347239 GAAATAAAAT
347249 CGGGGTTGAAGTATCCCCTCG-GAAATAA
1 CGGGGTTGAAGTATCCCCT-GAGAAATAA
*
347277 CGGGATT-AGAGTAT-CCCTGATGAAATAA
1 CGGGGTTGA-AGTATCCCCTGA-GAAATAA
* *
347305 CGGGGTTGGAGTACCCCC
1 CGGGGTTGAAGTATCCCC
347323 GATTATGAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
26 1 0.03
27 5 0.14
28 28 0.76
29 3 0.08
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.22
Consensus pattern (28 bp):
CGGGGTTGAAGTATCCCCTGAGAAATAA
Found at i:347363 original size:109 final size:109
Alignment explanation
Indices: 347234--347552 Score: 455
Period size: 109 Copynumber: 2.9 Consensus size: 109
347224 AAAATTGGTA
* ** * *
347234 TTTTAGAAATAAAATCGGGGTTGAAGTATCCCCTCGGAAATAACGGGATTAGAGTATCCCTGATG
1 TTTTAGATATAAAGCCGGGGTTGGAGTATCCCCTCGGAAATAACGGGATTGGAGTATCCCTGATG
*
347299 AAATAACGGGGTTGGAGTACCCCCGATTATGAAAAAAATAATAT
66 AAATAACGGGGTTGGAGTACCCCCGATTGTGAAAAAAATAATAT
*
347343 TTTTAGATATAAAGCCGGGGTTGGAGTATCCACTCGGAAATAACGGGGA-TGGAGTATTCCC-GA
1 TTTTAGATATAAAGCCGGGGTTGGAGTATCCCCTCGGAAATAAC-GGGATTGGAGTA-TCCCTGA
* * * * *
347406 TGAAATAATGGGGTTGGAGTATCCCCAATTGTGAAACATATAATAT
64 TGAAATAACGGGGTTGGAGTACCCCCGATTGTGAAAAAAATAATAT
*
347452 TTTTAGATATAAAGCCGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTAT-CCTCGAT
1 TTTTAGATATAAAGCCGGGGTTGGAGTATCCCCTCGGAAATAACGGGATTGGAGTATCCCT-GAT
**
347516 GAAATAACAAGGTTGGAGTACCCCCGATTGTGAAAAA
65 GAAATAACGGGGTTGGAGTACCCCCGATTGTGAAAAA
347553 TTGGTGTTTT
Statistics
Matches: 185, Mismatches: 20, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
107 2 0.01
108 4 0.02
109 171 0.92
110 8 0.04
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (109 bp):
TTTTAGATATAAAGCCGGGGTTGGAGTATCCCCTCGGAAATAACGGGATTGGAGTATCCCTGATG
AAATAACGGGGTTGGAGTACCCCCGATTGTGAAAAAAATAATAT
Found at i:347398 original size:28 final size:27
Alignment explanation
Indices: 347358--347431 Score: 87
Period size: 28 Copynumber: 2.7 Consensus size: 27
347348 GATATAAAGC
347358 CGGGGTTGGAGTATCCACTCG-GAAATAA
1 CGGGGTTGGAGTATCC-C-CGAGAAATAA
* *
347386 CGGGGATGGAGTATTCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGA-GAAATAA
*
347414 TGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
347432 AATTGTGAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
26 2 0.05
27 1 0.03
28 36 0.92
ACGTcount: A:0.26, C:0.18, G:0.34, T:0.23
Consensus pattern (27 bp):
CGGGGTTGGAGTATCCCCGAGAAATAA
Found at i:347507 original size:28 final size:29
Alignment explanation
Indices: 347467--347540 Score: 91
Period size: 28 Copynumber: 2.6 Consensus size: 29
347457 GATATAAAGC
347467 CGGGGTTGGAGTATCCCCTCG-GAAATAA
1 CGGGGTTGGAGTATCCCCTCGAGAAATAA
347495 CGGGGTTGGAGTAT--CCTCGATGAAATAA
1 CGGGGTTGGAGTATCCCCTCGA-GAAATAA
** *
347523 CAAGGTTGGAGTACCCCC
1 CGGGGTTGGAGTATCCCC
347541 GATTGTGAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
26 5 0.13
28 32 0.82
30 2 0.05
ACGTcount: A:0.26, C:0.22, G:0.31, T:0.22
Consensus pattern (29 bp):
CGGGGTTGGAGTATCCCCTCGAGAAATAA
Found at i:347691 original size:51 final size:51
Alignment explanation
Indices: 347527--347670 Score: 180
Period size: 51 Copynumber: 2.8 Consensus size: 51
347517 AAATAACAAG
* * * *
347527 GTTGGAGTACCCCCGATTGTGAAAAATTGGTGTTTTGGCAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGAGAAAAATTGATGTTTTGGAAATAAAATCGGA
* * * * * *
347578 GTTGAAGTATCCCCGATTGCGATAAATCGATGCTTTAGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGAGAAAAATTGATGTTTTGGAAATAAAATCGGA
* *
347629 GTTAGAGTATCCCCGATTAAGAAAAATTGATGTTTTGGAAAT
1 GTTGGAGTATCCCCGATTGAGAAAAATTGATGTTTTGGAAAT
347671 GGAACCGGGA
Statistics
Matches: 76, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
51 76 1.00
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.30
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTGAGAAAAATTGATGTTTTGGAAATAAAATCGGA
Found at i:353292 original size:32 final size:32
Alignment explanation
Indices: 353245--353309 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
353235 GCAGTAGCTT
353245 TGTAGCGATACATTGTATCGATACAACACTTA
1 TGTAGCGATACATTGTATCGATACAACACTTA
* *
353277 TGTATCGATATATTGTATCGATACAACACTTA
1 TGTAGCGATACATTGTATCGATACAACACTTA
353309 T
1 T
353310 TCATGTCAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35
Consensus pattern (32 bp):
TGTAGCGATACATTGTATCGATACAACACTTA
Found at i:353640 original size:11 final size:10
Alignment explanation
Indices: 353622--353697 Score: 57
Period size: 11 Copynumber: 7.1 Consensus size: 10
353612 GACCCCTTTC
353622 TGTTTTTTGTT
1 TGTTTTTT-TT
353633 AT-TTTTTTTCT
1 -TGTTTTTTT-T
353644 TGGTTTTTTGTT
1 T-GTTTTTT-TT
*
353656 T-TTTATTTT
1 TGTTTTTTTT
353665 TGTTTTATTTT
1 TGTTTT-TTTT
353676 TGTGTTTTTTT
1 TGT-TTTTTTT
*
353687 GGTTTTTTTT
1 TGTTTTTTTT
353697 T
1 T
353698 AGGTACGAAG
Statistics
Matches: 53, Mismatches: 4, Indels: 16
0.73 0.05 0.22
Matches are distributed among these distances:
9 3 0.06
10 17 0.32
11 20 0.38
12 12 0.23
13 1 0.02
ACGTcount: A:0.04, C:0.01, G:0.13, T:0.82
Consensus pattern (10 bp):
TGTTTTTTTT
Found at i:359978 original size:13 final size:13
Alignment explanation
Indices: 359960--359985 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
359950 TACAGCAAGT
359960 ATGTATCGATACA
1 ATGTATCGATACA
359973 ATGTATCGATACA
1 ATGTATCGATACA
359986 CAAAAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:362248 original size:21 final size:22
Alignment explanation
Indices: 362202--362246 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
362192 TTGCAAGTTG
362202 AAATAAAGAAGTTAGCTAATGA
1 AAATAAAGAAGTTAGCTAATGA
*
362224 AAATAATG-AGTTAGCTAA-GA
1 AAATAAAGAAGTTAGCTAATGA
362244 AAA
1 AAA
362247 ATGAAAACTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 5 0.23
21 10 0.45
22 7 0.32
ACGTcount: A:0.56, C:0.04, G:0.18, T:0.22
Consensus pattern (22 bp):
AAATAAAGAAGTTAGCTAATGA
Found at i:364069 original size:15 final size:15
Alignment explanation
Indices: 364049--364079 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
364039 TAAAAATGTC
*
364049 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
364064 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
364079 C
1 C
364080 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:368072 original size:38 final size:40
Alignment explanation
Indices: 368017--368096 Score: 103
Period size: 38 Copynumber: 2.0 Consensus size: 40
368007 GGGAGATAAA
*
368017 GGGGAGAATGCATAAA-TTGCTACAA-TTATTTT-ATTAAG
1 GGGGAGAATGCACAAATTTGCTA-AATTTATTTTGATTAAG
* *
368055 GGGGAGAATGTACAAATTTGTTAAATTTATTTTGATTAAG
1 GGGGAGAATGCACAAATTTGCTAAATTTATTTTGATTAAG
368095 GG
1 GG
368097 AGAAATAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
38 16 0.44
39 12 0.33
40 8 0.22
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36
Consensus pattern (40 bp):
GGGGAGAATGCACAAATTTGCTAAATTTATTTTGATTAAG
Found at i:368737 original size:13 final size:13
Alignment explanation
Indices: 368719--368744 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
368709 TACAGCAAGT
368719 ATGTATCGATACA
1 ATGTATCGATACA
368732 ATGTATCGATACA
1 ATGTATCGATACA
368745 CAAAAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:368829 original size:20 final size:20
Alignment explanation
Indices: 368801--368838 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
368791 CTATATTTTC
368801 AAATATGTATCGATACATCA
1 AAATATGTATCGATACATCA
*
368821 AAATTTGTATCGATACAT
1 AAATATGTATCGATACAT
368839 TTACACGGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (20 bp):
AAATATGTATCGATACATCA
Found at i:374689 original size:13 final size:13
Alignment explanation
Indices: 374671--374700 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
374661 TAGCTACATT
374671 TTGGGTCCGAGAA
1 TTGGGTCCGAGAA
*
374684 TTGGGTCTGAGAA
1 TTGGGTCCGAGAA
374697 TTGG
1 TTGG
374701 TTACCCGCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.20, C:0.10, G:0.40, T:0.30
Consensus pattern (13 bp):
TTGGGTCCGAGAA
Found at i:375565 original size:21 final size:21
Alignment explanation
Indices: 375532--375572 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
375522 CTAAGTAAAA
375532 ATACGTATTGTATCAATACAT
1 ATACGTATTGTATCAATACAT
*
375553 ATAC-TATTGGTATTAATACA
1 ATACGTATT-GTATCAATACA
375573 CAAGGTTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (21 bp):
ATACGTATTGTATCAATACAT
Found at i:375637 original size:20 final size:19
Alignment explanation
Indices: 375612--375682 Score: 70
Period size: 20 Copynumber: 3.6 Consensus size: 19
375602 ACCCTGAAAA
375612 GTATCGATACACATTTAAAT
1 GTATCGATACACA-TTAAAT
* **
375632 GTATCGATACAAATTGCAT
1 GTATCGATACACATTAAAT
**
375651 AGTATCGATACACACAAATAT
1 -GTATCGATACACATTAA-AT
375672 GTATCGATACA
1 GTATCGATACA
375683 GGTCATTGGC
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
19 4 0.10
20 35 0.85
21 2 0.05
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.30
Consensus pattern (19 bp):
GTATCGATACACATTAAAT
Found at i:375778 original size:10 final size:10
Alignment explanation
Indices: 375759--375789 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
375749 AATCTCATTT
375759 TCACTGTTCA
1 TCACTGTTCA
*
375769 TCACTATTCA
1 TCACTGTTCA
375779 TCACTGTTCA
1 TCACTGTTCA
375789 T
1 T
375790 GTATCGATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.23, C:0.29, G:0.06, T:0.42
Consensus pattern (10 bp):
TCACTGTTCA
Found at i:375985 original size:13 final size:13
Alignment explanation
Indices: 375967--375992 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
375957 ACATATTTGT
375967 GTGTATCGATACA
1 GTGTATCGATACA
375980 GTGTATCGATACA
1 GTGTATCGATACA
375993 TCATAAATAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (13 bp):
GTGTATCGATACA
Done.