Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2548
Parameters: 2 7 7 80 10 50 1000
Length:  42255

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1452--1484
16
1.9
18
88
11
52
51
0
12
36
1.39
3605--3635
3
10.3
3
100
0
62
0
32
0
67
0.91
4714--4755
22
1.9
22
90
9
68
38
0
0
61
0.96
6347--6380
11
3.2
11
91
4
52
52
0
0
47
1.00
6731--6769
20
2.1
18
85
9
51
20
7
0
71
1.10
7075--7108
16
2.1
16
88
5
50
35
0
11
52
1.38
11443--11479
18
2.1
18
90
10
58
62
0
0
37
0.96
13185--13230
15
2.9
15
81
12
56
47
0
0
52
1.00
13190--13230
16
2.6
16
84
11
57
51
0
0
48
1.00
13224--13391
13
12.2
13
66
26
62
57
0
1
40
1.09
13201--13296
30
3.5
27
72
16
81
56
0
1
42
1.06
13275--13318
24
2.0
22
83
16
56
61
0
2
36
1.09
13210--13413
96
2.1
96
98
1
394
56
0
1
41
1.10
13712--13753
22
1.9
22
95
0
75
66
9
2
21
1.32
14619--14939
16
19.7
16
70
13
131
38
1
3
55
1.29
14620--14738
48
2.5
49
80
10
147
37
0
3
57
1.21
14752--14804
15
3.6
14
80
10
54
50
3
0
45
1.19
14809--14921
46
2.7
38
78
15
109
35
1
0
61
1.12
14846--14939
46
2.0
48
89
4
147
34
0
2
63
1.06
15913--15970
25
2.4
25
85
2
73
44
0
1
53
1.10
15918--16005
27
3.2
27
70
18
67
50
0
1
48
1.08
15995--16025
16
1.9
16
100
0
62
38
0
0
61
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17008--17055
16
3.1
16
81
3
53
58
14
2
25
1.48
17698--17785
30
2.8
29
72
19
70
59
1
0
39
1.05
17709--17795
45
1.9
45
81
9
106
59
1
0
39
1.05
17693--17798
40
2.6
38
74
12
95
61
0
0
37
1.03
18112--18142
2
15.5
2
100
0
62
48
0
0
51
1.00
18374--18412
19
2.1
19
95
0
69
53
10
20
15
1.70
20601--20646
23
2.0
22
83
4
56
41
2
8
47
1.46
23982--24022
19
2.1
20
86
13
59
31
12
0
56
1.36
24888--24931
22
2.0
23
86
4
63
45
0
29
25
1.54
25972--26010
20
1.9
21
94
5
71
33
17
12
35
1.88
26116--26170
26
2.1
26
83
6
67
58
21
0
20
1.40
30486--30516
3
10.3
3
92
0
53
29
32
0
38
1.57
30484--30522
9
4.3
9
90
0
51
25
30
0
43
1.55
32187--32233
20
2.3
20
96
0
85
34
19
8
38
1.82
32241--32279
20
1.9
21
94
5
71
20
17
20
41
1.91
33119--33190
36
2.0
36
97
0
135
40
25
20
13
1.90
37337--37389
22
2.4
22
93
0
88
56
0
5
37
1.23
37680--37797
34
3.3
32
69
24
94
50
0
0
49
1.06
37672--37835
73
2.2
74
89
8
244
48
0
0
50
1.05
38201--38245
23
2.0
22
83
12
56
42
0
2
55
1.12
39093--39155
21
3.2
20
77
18
69
47
0
0
52
1.00
39096--39143
25
2.0
25
87
4
71
45
0
0
54
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39122--39191
27
2.5
28
77
17
74
54
0
0
45
0.99
39475--39531
15
3.6
15
82
17
71
49
0
0
50
1.00
39489--39537
15
2.9
18
82
17
68
51
0
0
48
1.00
39475--39537
33
1.9
33
90
6
101
50
0
0
49
1.00
39811--39850
15
2.6
15
92
4
62
2
25
0
72
0.97
39803--39850
5
9.2
5
86
4
51
2
25
0
72
0.95

Tables:   1

The End!